AutoCloner

Multiple sequence alignment - TraesCS2B01G107300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G107300	chr2B	100.000	2645	0	0	1	2645	68234332	68231688	0.000000e+00	4885.0
1	TraesCS2B01G107300	chr7B	90.518	1835	164	4	820	2645	659637389	659635556	0.000000e+00	2416.0
2	TraesCS2B01G107300	chr1B	90.191	1835	170	7	819	2645	55962238	55960406	0.000000e+00	2383.0
3	TraesCS2B01G107300	chr1B	90.075	1330	130	2	1317	2645	55950671	55949343	0.000000e+00	1724.0
4	TraesCS2B01G107300	chr1B	87.023	786	94	5	1	779	55948502	55949286	0.000000e+00	880.0
5	TraesCS2B01G107300	chr1B	87.023	786	95	4	1	779	55959564	55960349	0.000000e+00	880.0
6	TraesCS2B01G107300	chr5B	90.263	1828	169	3	826	2645	599524948	599523122	0.000000e+00	2381.0
7	TraesCS2B01G107300	chr5B	76.677	1848	371	37	819	2645	161112835	161111027	0.000000e+00	970.0
8	TraesCS2B01G107300	chr5B	86.358	799	89	9	1	779	599522267	599523065	0.000000e+00	854.0
9	TraesCS2B01G107300	chr5B	75.152	660	142	20	7	652	377623277	377623928	9.260000e-75	291.0
10	TraesCS2B01G107300	chr1A	87.980	1822	206	6	831	2643	546776385	546774568	0.000000e+00	2139.0
11	TraesCS2B01G107300	chr1A	85.882	765	98	7	1	757	546773726	546774488	0.000000e+00	806.0
12	TraesCS2B01G107300	chr3D	89.103	1450	148	4	821	2262	444706917	444708364	0.000000e+00	1794.0
13	TraesCS2B01G107300	chr3D	88.062	779	81	9	1	771	444709544	444708770	0.000000e+00	913.0
14	TraesCS2B01G107300	chr5D	83.215	1829	270	22	842	2641	438586250	438584430	0.000000e+00	1642.0
15	TraesCS2B01G107300	chr5D	78.662	792	150	15	1	779	438583584	438584369	2.350000e-140	508.0
16	TraesCS2B01G107300	chr5D	81.443	97	18	0	238	334	41130205	41130109	2.180000e-11	80.5
17	TraesCS2B01G107300	chr5A	82.686	1750	276	24	904	2644	54340302	54338571	0.000000e+00	1528.0
18	TraesCS2B01G107300	chr5A	77.343	715	146	11	55	757	54337781	54338491	2.450000e-110	409.0
19	TraesCS2B01G107300	chr6A	80.500	1841	322	31	820	2644	556139099	556140918	0.000000e+00	1376.0
20	TraesCS2B01G107300	chr6A	80.044	907	148	25	818	1710	60999826	60998939	2.220000e-180	641.0
21	TraesCS2B01G107300	chrUn	80.165	1573	285	22	1081	2644	1208760	1210314	0.000000e+00	1151.0
22	TraesCS2B01G107300	chr6B	78.780	787	156	7	1	779	313299542	313298759	3.900000e-143	518.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G107300	chr2B	68231688	68234332	2644	True	4885	4885	100.000	1	2645	1	chr2B.!!$R1	2644
1	TraesCS2B01G107300	chr7B	659635556	659637389	1833	True	2416	2416	90.518	820	2645	1	chr7B.!!$R1	1825
2	TraesCS2B01G107300	chr1B	55960406	55962238	1832	True	2383	2383	90.191	819	2645	1	chr1B.!!$R2	1826
3	TraesCS2B01G107300	chr1B	55949343	55950671	1328	True	1724	1724	90.075	1317	2645	1	chr1B.!!$R1	1328
4	TraesCS2B01G107300	chr1B	55948502	55949286	784	False	880	880	87.023	1	779	1	chr1B.!!$F1	778
5	TraesCS2B01G107300	chr1B	55959564	55960349	785	False	880	880	87.023	1	779	1	chr1B.!!$F2	778
6	TraesCS2B01G107300	chr5B	599523122	599524948	1826	True	2381	2381	90.263	826	2645	1	chr5B.!!$R2	1819
7	TraesCS2B01G107300	chr5B	161111027	161112835	1808	True	970	970	76.677	819	2645	1	chr5B.!!$R1	1826
8	TraesCS2B01G107300	chr5B	599522267	599523065	798	False	854	854	86.358	1	779	1	chr5B.!!$F2	778
9	TraesCS2B01G107300	chr5B	377623277	377623928	651	False	291	291	75.152	7	652	1	chr5B.!!$F1	645
10	TraesCS2B01G107300	chr1A	546774568	546776385	1817	True	2139	2139	87.980	831	2643	1	chr1A.!!$R1	1812
11	TraesCS2B01G107300	chr1A	546773726	546774488	762	False	806	806	85.882	1	757	1	chr1A.!!$F1	756
12	TraesCS2B01G107300	chr3D	444706917	444708364	1447	False	1794	1794	89.103	821	2262	1	chr3D.!!$F1	1441
13	TraesCS2B01G107300	chr3D	444708770	444709544	774	True	913	913	88.062	1	771	1	chr3D.!!$R1	770
14	TraesCS2B01G107300	chr5D	438584430	438586250	1820	True	1642	1642	83.215	842	2641	1	chr5D.!!$R2	1799
15	TraesCS2B01G107300	chr5D	438583584	438584369	785	False	508	508	78.662	1	779	1	chr5D.!!$F1	778
16	TraesCS2B01G107300	chr5A	54338571	54340302	1731	True	1528	1528	82.686	904	2644	1	chr5A.!!$R1	1740
17	TraesCS2B01G107300	chr5A	54337781	54338491	710	False	409	409	77.343	55	757	1	chr5A.!!$F1	702
18	TraesCS2B01G107300	chr6A	556139099	556140918	1819	False	1376	1376	80.500	820	2644	1	chr6A.!!$F1	1824
19	TraesCS2B01G107300	chr6A	60998939	60999826	887	True	641	641	80.044	818	1710	1	chr6A.!!$R1	892
20	TraesCS2B01G107300	chrUn	1208760	1210314	1554	False	1151	1151	80.165	1081	2644	1	chrUn.!!$F1	1563
21	TraesCS2B01G107300	chr6B	313298759	313299542	783	True	518	518	78.780	1	779	1	chr6B.!!$R1	778

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
197	213	0.099968	CCTTGCTCATCATGCAACGG	59.900	55.0	0.0	0.0	44.24	4.44	F
372	391	0.251877	TCATGTGTAGGTCCGGGTCA	60.252	55.0	0.0	0.0	0.00	4.02	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1366	1420	0.737715	AGCTCAATCGTTGACGGCTC	60.738	55.000	3.48	0.0	36.75	4.70	R
1969	2026	1.068055	CCTTGCTGGATTGCACTTGAC	60.068	52.381	0.00	0.0	43.20	3.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
173	188	3.194005	TCTCTGTTTGGTCCTCAACAC	57.806	47.619	3.71	0.00	34.67	3.32
176	191	3.042682	TCTGTTTGGTCCTCAACACCTA	58.957	45.455	3.71	0.00	34.67	3.08
197	213	0.099968	CCTTGCTCATCATGCAACGG	59.900	55.000	0.00	0.00	44.24	4.44
235	251	2.270527	GTCTCCTGCTTGCCCTCC	59.729	66.667	0.00	0.00	0.00	4.30
330	346	2.800544	CTCACGGTGAAACAATTCGACT	59.199	45.455	12.54	0.00	39.98	4.18
369	388	1.191535	TCTTCATGTGTAGGTCCGGG	58.808	55.000	0.00	0.00	0.00	5.73
372	391	0.251877	TCATGTGTAGGTCCGGGTCA	60.252	55.000	0.00	0.00	0.00	4.02
377	396	0.409092	TGTAGGTCCGGGTCAACCTA	59.591	55.000	14.26	14.26	44.12	3.08
386	405	0.912486	GGGTCAACCTAGGACAGCAT	59.088	55.000	17.98	0.00	37.00	3.79
448	467	2.030007	CCGCACTGATCCAAATGTGTTT	60.030	45.455	0.00	0.00	33.44	2.83
635	655	1.531149	GCTGCTGTTCACGTAACATGT	59.469	47.619	9.85	0.00	46.81	3.21
658	678	2.025981	CAGGATTGGGATGTGGTCAGAA	60.026	50.000	0.00	0.00	0.00	3.02
705	728	4.557554	TGGTAATGCCATGAGCCG	57.442	55.556	0.00	0.00	43.61	5.52
708	731	1.103398	GGTAATGCCATGAGCCGCTT	61.103	55.000	0.00	0.00	42.71	4.68
757	780	0.541863	CCCGAGTAAATGTGCCTCCT	59.458	55.000	0.00	0.00	0.00	3.69
779	802	4.502016	TGCAACATGCTTTTTGAAAGTCA	58.498	34.783	3.78	2.31	45.31	3.41
780	803	4.934001	TGCAACATGCTTTTTGAAAGTCAA	59.066	33.333	3.78	0.00	45.31	3.18
781	804	5.410746	TGCAACATGCTTTTTGAAAGTCAAA	59.589	32.000	3.78	0.00	45.31	2.69
782	805	5.734035	GCAACATGCTTTTTGAAAGTCAAAC	59.266	36.000	2.96	0.00	41.97	2.93
783	806	6.620303	GCAACATGCTTTTTGAAAGTCAAACA	60.620	34.615	2.96	0.00	41.97	2.83
784	807	7.296660	CAACATGCTTTTTGAAAGTCAAACAA	58.703	30.769	2.96	1.97	45.03	2.83
785	808	7.064060	ACATGCTTTTTGAAAGTCAAACAAG	57.936	32.000	2.96	10.44	45.03	3.16
786	809	6.650390	ACATGCTTTTTGAAAGTCAAACAAGT	59.350	30.769	17.24	9.29	45.03	3.16
787	810	7.173047	ACATGCTTTTTGAAAGTCAAACAAGTT	59.827	29.630	17.24	0.00	45.03	2.66
788	811	8.655092	CATGCTTTTTGAAAGTCAAACAAGTTA	58.345	29.630	17.24	11.93	45.03	2.24
789	812	8.238481	TGCTTTTTGAAAGTCAAACAAGTTAG	57.762	30.769	17.24	7.19	45.03	2.34
790	813	7.330700	TGCTTTTTGAAAGTCAAACAAGTTAGG	59.669	33.333	17.24	3.44	45.03	2.69
791	814	7.544217	GCTTTTTGAAAGTCAAACAAGTTAGGA	59.456	33.333	17.24	0.00	45.03	2.94
792	815	9.586435	CTTTTTGAAAGTCAAACAAGTTAGGAT	57.414	29.630	2.96	0.00	45.03	3.24
793	816	9.936759	TTTTTGAAAGTCAAACAAGTTAGGATT	57.063	25.926	2.96	0.00	45.03	3.01
794	817	9.581099	TTTTGAAAGTCAAACAAGTTAGGATTC	57.419	29.630	2.96	0.00	45.03	2.52
795	818	7.873719	TGAAAGTCAAACAAGTTAGGATTCA	57.126	32.000	0.00	0.00	0.00	2.57
796	819	7.703328	TGAAAGTCAAACAAGTTAGGATTCAC	58.297	34.615	0.00	0.00	0.00	3.18
797	820	7.556275	TGAAAGTCAAACAAGTTAGGATTCACT	59.444	33.333	0.00	0.00	0.00	3.41
798	821	8.974060	AAAGTCAAACAAGTTAGGATTCACTA	57.026	30.769	0.00	0.00	0.00	2.74
799	822	8.608844	AAGTCAAACAAGTTAGGATTCACTAG	57.391	34.615	0.00	0.00	0.00	2.57
800	823	7.963532	AGTCAAACAAGTTAGGATTCACTAGA	58.036	34.615	0.00	0.00	0.00	2.43
801	824	7.873505	AGTCAAACAAGTTAGGATTCACTAGAC	59.126	37.037	0.00	0.00	0.00	2.59
802	825	7.873505	GTCAAACAAGTTAGGATTCACTAGACT	59.126	37.037	0.00	0.00	0.00	3.24
803	826	8.429641	TCAAACAAGTTAGGATTCACTAGACTT	58.570	33.333	0.00	0.00	31.07	3.01
804	827	8.713271	CAAACAAGTTAGGATTCACTAGACTTC	58.287	37.037	0.00	0.00	29.82	3.01
805	828	7.784470	ACAAGTTAGGATTCACTAGACTTCT	57.216	36.000	0.00	0.00	29.82	2.85
806	829	8.880991	ACAAGTTAGGATTCACTAGACTTCTA	57.119	34.615	0.00	0.00	29.82	2.10
807	830	9.310449	ACAAGTTAGGATTCACTAGACTTCTAA	57.690	33.333	0.00	0.00	29.82	2.10
808	831	9.575783	CAAGTTAGGATTCACTAGACTTCTAAC	57.424	37.037	0.00	6.98	29.82	2.34
809	832	8.880991	AGTTAGGATTCACTAGACTTCTAACA	57.119	34.615	13.26	0.00	0.00	2.41
810	833	8.962679	AGTTAGGATTCACTAGACTTCTAACAG	58.037	37.037	13.26	0.00	0.00	3.16
811	834	8.958506	GTTAGGATTCACTAGACTTCTAACAGA	58.041	37.037	0.00	0.00	0.00	3.41
812	835	9.702253	TTAGGATTCACTAGACTTCTAACAGAT	57.298	33.333	0.00	0.00	0.00	2.90
814	837	9.127277	AGGATTCACTAGACTTCTAACAGATAC	57.873	37.037	0.00	0.00	0.00	2.24
815	838	8.904834	GGATTCACTAGACTTCTAACAGATACA	58.095	37.037	0.00	0.00	0.00	2.29
946	987	1.430369	GGGGGCTATGCAGAGGGAAT	61.430	60.000	10.92	0.00	0.00	3.01
1246	1300	2.501723	GAGGTAAAGATCAGGCCACTCA	59.498	50.000	5.01	0.00	0.00	3.41
1356	1410	1.223487	GGTTCTGGCGCCCTATGAA	59.777	57.895	26.77	19.17	0.00	2.57
1467	1521	1.595311	AGGCCTTGTCATCCATGGTA	58.405	50.000	12.58	0.00	39.89	3.25
1527	1581	2.289819	CGAGGGTAACTTTGCAAGGGTA	60.290	50.000	13.65	7.97	0.00	3.69
1563	1617	7.736447	AGATGTGACTAAACCTCTGAAAAAG	57.264	36.000	0.00	0.00	0.00	2.27
1582	1636	1.228657	GGTTGTCTCGCTGGTGGTTC	61.229	60.000	0.00	0.00	0.00	3.62
1599	1653	4.153655	GTGGTTCAAAAGAAGGATACGGTC	59.846	45.833	0.00	0.00	46.39	4.79
1623	1677	4.318332	AGCGTGTCATCTTCAGAATCAAA	58.682	39.130	0.00	0.00	0.00	2.69
1644	1698	6.320926	TCAAATATGAAAGATTGCCGGATTGA	59.679	34.615	5.05	0.00	30.99	2.57
1693	1747	6.127338	CCATCTGTATAAAGAGTGTGGAGACA	60.127	42.308	5.40	0.00	38.70	3.41
1712	1766	2.154462	CAGCGTTCATCCTCCAAAGTT	58.846	47.619	0.00	0.00	0.00	2.66
1780	1835	2.047830	GGGACGGGGAGAAGATAACAT	58.952	52.381	0.00	0.00	0.00	2.71
1788	1843	4.349342	GGGGAGAAGATAACATCACCAGAT	59.651	45.833	0.00	0.00	33.87	2.90
1877	1932	1.383664	CCAGGATCAGGAGGAGGCA	60.384	63.158	0.00	0.00	0.00	4.75
1969	2026	0.311790	AAAGCTTCACATGCACCACG	59.688	50.000	0.00	0.00	0.00	4.94
2027	2087	2.231380	ACCGATTCCACCAAGCCCT	61.231	57.895	0.00	0.00	0.00	5.19
2033	2093	1.367346	TTCCACCAAGCCCTACATCA	58.633	50.000	0.00	0.00	0.00	3.07
2042	2102	2.716217	AGCCCTACATCAAAGCAAGAC	58.284	47.619	0.00	0.00	0.00	3.01
2090	2150	3.969287	TCTGCAGAGACAAATACAGCT	57.031	42.857	13.74	0.00	0.00	4.24
2117	2177	1.737793	GCAACATCTAACAAGACCCCG	59.262	52.381	0.00	0.00	0.00	5.73
2311	2378	5.880901	AGAGTAGAAAATTTGGCAGAAGGA	58.119	37.500	0.00	0.00	0.00	3.36
2474	2541	2.265367	TGCAGGTCAGGATTACCTTCA	58.735	47.619	0.00	0.00	45.26	3.02
2591	2658	5.930569	GGTGATTTCAACGAGGTACTAAACT	59.069	40.000	0.00	0.00	41.55	2.66
2635	2702	1.079503	GTCGAAGCCAACCACAGATC	58.920	55.000	0.00	0.00	0.00	2.75

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
173	188	1.134007	TGCATGATGAGCAAGGGTAGG	60.134	52.381	0.00	0.00	39.39	3.18
176	191	3.675995	TTGCATGATGAGCAAGGGT	57.324	47.368	0.00	0.00	46.13	4.34
197	213	1.792367	GGCGCAAAAACCAGATCAAAC	59.208	47.619	10.83	0.00	0.00	2.93
235	251	7.596995	TGACAAAAACACTTACTTTTTCCACTG	59.403	33.333	0.00	0.00	30.09	3.66
330	346	1.045407	AACAAGTGTCAGACCGCCTA	58.955	50.000	0.00	0.00	0.00	3.93
369	388	1.339055	TGCATGCTGTCCTAGGTTGAC	60.339	52.381	20.33	0.00	0.00	3.18
372	391	1.340405	CCTTGCATGCTGTCCTAGGTT	60.340	52.381	20.33	0.00	0.00	3.50
377	396	0.322277	CAGACCTTGCATGCTGTCCT	60.322	55.000	20.33	6.79	0.00	3.85
635	655	0.034186	GACCACATCCCAATCCTGCA	60.034	55.000	0.00	0.00	0.00	4.41
658	678	2.436646	CTCAAGAATGCGGCGGGT	60.437	61.111	9.78	0.00	0.00	5.28
705	728	4.615588	AGATGCCTAGTGAATCCTAAGC	57.384	45.455	0.00	0.00	0.00	3.09
708	731	5.903923	TGGATAGATGCCTAGTGAATCCTA	58.096	41.667	0.00	0.00	0.00	2.94
757	780	4.934001	TTGACTTTCAAAAAGCATGTTGCA	59.066	33.333	1.93	0.00	38.56	4.08
766	789	8.980143	TCCTAACTTGTTTGACTTTCAAAAAG	57.020	30.769	2.96	10.69	46.53	2.27
779	802	8.652290	AGAAGTCTAGTGAATCCTAACTTGTTT	58.348	33.333	0.00	0.00	0.00	2.83
780	803	8.196378	AGAAGTCTAGTGAATCCTAACTTGTT	57.804	34.615	0.00	0.00	0.00	2.83
781	804	7.784470	AGAAGTCTAGTGAATCCTAACTTGT	57.216	36.000	0.00	0.00	0.00	3.16
782	805	9.575783	GTTAGAAGTCTAGTGAATCCTAACTTG	57.424	37.037	0.00	0.00	0.00	3.16
783	806	9.310449	TGTTAGAAGTCTAGTGAATCCTAACTT	57.690	33.333	0.00	6.01	0.00	2.66
784	807	8.880991	TGTTAGAAGTCTAGTGAATCCTAACT	57.119	34.615	0.00	0.00	0.00	2.24
785	808	8.958506	TCTGTTAGAAGTCTAGTGAATCCTAAC	58.041	37.037	0.00	0.00	0.00	2.34
786	809	9.702253	ATCTGTTAGAAGTCTAGTGAATCCTAA	57.298	33.333	0.00	0.00	0.00	2.69
788	811	9.127277	GTATCTGTTAGAAGTCTAGTGAATCCT	57.873	37.037	0.00	0.00	0.00	3.24
789	812	8.904834	TGTATCTGTTAGAAGTCTAGTGAATCC	58.095	37.037	0.00	0.00	0.00	3.01
796	819	9.535878	GGGAATTTGTATCTGTTAGAAGTCTAG	57.464	37.037	0.00	0.00	0.00	2.43
797	820	8.483758	GGGGAATTTGTATCTGTTAGAAGTCTA	58.516	37.037	0.00	0.00	0.00	2.59
798	821	7.182930	AGGGGAATTTGTATCTGTTAGAAGTCT	59.817	37.037	0.00	0.00	0.00	3.24
799	822	7.339482	AGGGGAATTTGTATCTGTTAGAAGTC	58.661	38.462	0.00	0.00	0.00	3.01
800	823	7.037586	TGAGGGGAATTTGTATCTGTTAGAAGT	60.038	37.037	0.00	0.00	0.00	3.01
801	824	7.338710	TGAGGGGAATTTGTATCTGTTAGAAG	58.661	38.462	0.00	0.00	0.00	2.85
802	825	7.265599	TGAGGGGAATTTGTATCTGTTAGAA	57.734	36.000	0.00	0.00	0.00	2.10
803	826	6.884472	TGAGGGGAATTTGTATCTGTTAGA	57.116	37.500	0.00	0.00	0.00	2.10
804	827	7.112779	ACTTGAGGGGAATTTGTATCTGTTAG	58.887	38.462	0.00	0.00	0.00	2.34
805	828	7.027874	ACTTGAGGGGAATTTGTATCTGTTA	57.972	36.000	0.00	0.00	0.00	2.41
806	829	5.892348	ACTTGAGGGGAATTTGTATCTGTT	58.108	37.500	0.00	0.00	0.00	3.16
807	830	5.520748	ACTTGAGGGGAATTTGTATCTGT	57.479	39.130	0.00	0.00	0.00	3.41
808	831	6.543831	CCTAACTTGAGGGGAATTTGTATCTG	59.456	42.308	0.00	0.00	32.39	2.90
809	832	6.663734	CCTAACTTGAGGGGAATTTGTATCT	58.336	40.000	0.00	0.00	32.39	1.98
810	833	6.944234	CCTAACTTGAGGGGAATTTGTATC	57.056	41.667	0.00	0.00	32.39	2.24
946	987	1.541310	CGGTACTGTCCCAAGCTCCA	61.541	60.000	0.00	0.00	0.00	3.86
1246	1300	5.163259	TGGAGGGAATAGAGATTCTCCTT	57.837	43.478	10.09	4.62	42.79	3.36
1366	1420	0.737715	AGCTCAATCGTTGACGGCTC	60.738	55.000	3.48	0.00	36.75	4.70
1467	1521	3.535561	CTCGGCAAATATGAACTCACCT	58.464	45.455	0.00	0.00	0.00	4.00
1527	1581	7.251994	GTTTAGTCACATCTATTCTCACTCGT	58.748	38.462	0.00	0.00	0.00	4.18
1563	1617	1.227853	AACCACCAGCGAGACAACC	60.228	57.895	0.00	0.00	0.00	3.77
1582	1636	2.603560	GCTCGACCGTATCCTTCTTTTG	59.396	50.000	0.00	0.00	0.00	2.44
1599	1653	1.982612	TTCTGAAGATGACACGCTCG	58.017	50.000	0.00	0.00	0.00	5.03
1623	1677	5.771666	ACATCAATCCGGCAATCTTTCATAT	59.228	36.000	0.00	0.00	0.00	1.78
1644	1698	2.418368	AATATCCACACACCGCACAT	57.582	45.000	0.00	0.00	0.00	3.21
1693	1747	2.154462	CAACTTTGGAGGATGAACGCT	58.846	47.619	0.00	0.00	0.00	5.07
1780	1835	4.758251	CACGGCCGCATCTGGTGA	62.758	66.667	28.58	0.00	0.00	4.02
1877	1932	3.187700	GACGTCCTTGAGCGTATGATTT	58.812	45.455	3.51	0.00	41.70	2.17
1969	2026	1.068055	CCTTGCTGGATTGCACTTGAC	60.068	52.381	0.00	0.00	43.20	3.18
1982	2042	1.096386	GCATGAGAGGAGCCTTGCTG	61.096	60.000	0.00	0.00	39.88	4.41
2027	2087	4.627058	TCTTCGTGTCTTGCTTTGATGTA	58.373	39.130	0.00	0.00	0.00	2.29
2033	2093	3.938963	TGTTTCTCTTCGTGTCTTGCTTT	59.061	39.130	0.00	0.00	0.00	3.51
2042	2102	2.348591	GCTCGGTTTGTTTCTCTTCGTG	60.349	50.000	0.00	0.00	0.00	4.35
2090	2150	6.374333	GGGTCTTGTTAGATGTTGCATTCTTA	59.626	38.462	0.00	0.00	31.86	2.10
2447	2514	1.219773	ATCCTGACCTGCATGTCCAT	58.780	50.000	18.00	6.18	34.25	3.41
2474	2541	3.648545	GGTACTTGGGCTTCTCCATAGAT	59.351	47.826	0.00	0.00	36.58	1.98
2591	2658	4.368315	CCGATTCCATCATGTTCGTCTAA	58.632	43.478	0.00	0.00	0.00	2.10

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.