Multiple sequence alignment - TraesCS2B01G105800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G105800 chr2B 100.000 3856 0 0 1 3856 66558289 66562144 0.000000e+00 7121.0
1 TraesCS2B01G105800 chr2D 91.930 1995 120 12 962 2931 38093450 38095428 0.000000e+00 2754.0
2 TraesCS2B01G105800 chr2D 94.726 967 48 1 1 964 38092443 38093409 0.000000e+00 1500.0
3 TraesCS2B01G105800 chr2D 81.015 453 76 7 3409 3856 610170394 610170841 6.130000e-93 351.0
4 TraesCS2B01G105800 chr2D 83.448 290 21 14 3009 3274 38095609 38095895 1.070000e-60 244.0
5 TraesCS2B01G105800 chr2A 91.799 1890 142 9 1055 2942 43152114 43153992 0.000000e+00 2619.0
6 TraesCS2B01G105800 chr2A 90.496 1210 94 11 976 2183 44092432 44093622 0.000000e+00 1578.0
7 TraesCS2B01G105800 chr2A 93.548 961 56 2 1 961 43146070 43147024 0.000000e+00 1426.0
8 TraesCS2B01G105800 chr2A 92.754 897 60 3 72 964 44091004 44091899 0.000000e+00 1291.0
9 TraesCS2B01G105800 chr2A 88.824 170 12 4 2258 2427 44093620 44093782 6.530000e-48 202.0
10 TraesCS2B01G105800 chr2A 93.478 92 6 0 962 1053 43147068 43147159 1.870000e-28 137.0
11 TraesCS2B01G105800 chr2A 91.228 57 5 0 2521 2577 4978862 4978806 1.150000e-10 78.7
12 TraesCS2B01G105800 chr5D 77.251 1877 363 48 963 2813 327522904 327524742 0.000000e+00 1042.0
13 TraesCS2B01G105800 chr5A 76.864 1435 300 26 962 2378 429171662 429170242 0.000000e+00 782.0
14 TraesCS2B01G105800 chr5A 83.183 333 50 4 2490 2819 429170137 429169808 2.250000e-77 300.0
15 TraesCS2B01G105800 chr7B 89.640 444 27 6 3414 3856 500253333 500252908 7.280000e-152 547.0
16 TraesCS2B01G105800 chr3B 89.165 443 43 3 3414 3856 17796282 17795845 7.280000e-152 547.0
17 TraesCS2B01G105800 chr7D 87.004 454 45 10 3406 3856 37650365 37650807 2.070000e-137 499.0
18 TraesCS2B01G105800 chr7D 81.879 447 73 5 3414 3856 33211636 33212078 1.690000e-98 370.0
19 TraesCS2B01G105800 chr1A 84.340 447 58 8 3414 3856 445653794 445653356 9.900000e-116 427.0
20 TraesCS2B01G105800 chr1B 82.735 446 68 7 3414 3856 27159284 27158845 4.670000e-104 388.0
21 TraesCS2B01G105800 chr3D 81.982 444 74 4 3414 3856 91803952 91804390 4.700000e-99 372.0
22 TraesCS2B01G105800 chr3A 81.124 445 76 3 3416 3856 744607439 744606999 2.200000e-92 350.0
23 TraesCS2B01G105800 chr5B 80.967 331 55 6 2490 2816 380817041 380817367 4.940000e-64 255.0
24 TraesCS2B01G105800 chr4D 91.071 56 5 0 2515 2570 443521040 443521095 4.130000e-10 76.8
25 TraesCS2B01G105800 chr4B 91.071 56 5 0 2515 2570 552846186 552846241 4.130000e-10 76.8
26 TraesCS2B01G105800 chr4A 91.071 56 5 0 2515 2570 24216805 24216750 4.130000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G105800 chr2B 66558289 66562144 3855 False 7121.000000 7121 100.000000 1 3856 1 chr2B.!!$F1 3855
1 TraesCS2B01G105800 chr2D 38092443 38095895 3452 False 1499.333333 2754 90.034667 1 3274 3 chr2D.!!$F2 3273
2 TraesCS2B01G105800 chr2A 43152114 43153992 1878 False 2619.000000 2619 91.799000 1055 2942 1 chr2A.!!$F1 1887
3 TraesCS2B01G105800 chr2A 44091004 44093782 2778 False 1023.666667 1578 90.691333 72 2427 3 chr2A.!!$F3 2355
4 TraesCS2B01G105800 chr2A 43146070 43147159 1089 False 781.500000 1426 93.513000 1 1053 2 chr2A.!!$F2 1052
5 TraesCS2B01G105800 chr5D 327522904 327524742 1838 False 1042.000000 1042 77.251000 963 2813 1 chr5D.!!$F1 1850
6 TraesCS2B01G105800 chr5A 429169808 429171662 1854 True 541.000000 782 80.023500 962 2819 2 chr5A.!!$R1 1857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
877 880 0.033504 GAATTCCCGGCGAGATAGCA 59.966 55.0 9.30 0.0 39.27 3.49 F
1626 2153 0.473755 AGTTGTGCACACATCCTGGA 59.526 50.0 21.56 0.0 41.52 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2501 3067 0.097325 CAGTCAGCCTCGTCGAGTAC 59.903 60.0 20.37 12.23 0.00 2.73 R
3231 3934 0.040058 AGCAAATGCATGAGTGGGGA 59.960 50.0 0.00 0.00 45.16 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
202 203 2.853914 GACAACAGCTTCGTCGGC 59.146 61.111 0.00 0.00 0.00 5.54
241 242 4.268720 GAGCTCCTCGACCTGGAT 57.731 61.111 0.87 0.00 32.56 3.41
266 267 2.250190 CGGTGTCGAAAAACGGGC 59.750 61.111 0.00 0.00 42.82 6.13
322 323 3.182967 CAAGTCCTTGACGATGCTCTAC 58.817 50.000 0.61 0.00 42.93 2.59
441 442 2.199117 TCCCACGAGAAATCGGGAG 58.801 57.895 0.66 0.00 42.94 4.30
457 459 3.453070 GAGATGCCGGGAGCTGGTC 62.453 68.421 21.78 0.83 44.23 4.02
602 605 1.434696 CAAATGCCGGACATGGAGC 59.565 57.895 5.05 0.00 39.60 4.70
833 836 4.090057 GGCTCGCCGTGCTTGTTC 62.090 66.667 11.18 0.00 0.00 3.18
877 880 0.033504 GAATTCCCGGCGAGATAGCA 59.966 55.000 9.30 0.00 39.27 3.49
892 895 5.231779 CGAGATAGCAAAATGTCAGTCTCTG 59.768 44.000 0.00 0.00 31.17 3.35
925 928 1.261619 CTCAACGACAACCAGTTCAGC 59.738 52.381 0.00 0.00 0.00 4.26
928 931 1.300620 CGACAACCAGTTCAGCGGA 60.301 57.895 0.00 0.00 0.00 5.54
947 953 3.249559 CGGAAGCTTATTGCCTGAAGATC 59.750 47.826 0.00 0.00 44.23 2.75
966 1015 0.606401 CTGGGCACGAACACAGGATT 60.606 55.000 4.11 0.00 0.00 3.01
1016 1543 0.904649 ACCATGCTTGATCTGTCCGA 59.095 50.000 0.22 0.00 0.00 4.55
1032 1559 1.952133 CGACAACAACTTCGCCGGA 60.952 57.895 5.05 0.00 0.00 5.14
1083 1610 0.824109 TGATCGGGACTCTGCGATTT 59.176 50.000 0.00 0.00 0.00 2.17
1098 1625 0.794473 GATTTTCGTCGAACCGGCTT 59.206 50.000 7.29 0.00 0.00 4.35
1116 1643 1.066605 CTTACCGGACCGATACCACAG 59.933 57.143 17.49 0.00 0.00 3.66
1233 1760 2.483714 GCAATATCTTCTGCTCGGTGGA 60.484 50.000 0.00 0.00 35.62 4.02
1243 1770 1.901650 GCTCGGTGGAAACAAGCTCG 61.902 60.000 0.00 0.00 46.06 5.03
1287 1814 1.841302 CTGCAACACAGGGCCTCCTA 61.841 60.000 0.95 0.00 42.67 2.94
1360 1887 2.492088 GGCAACCTTCAGTACATTTCCC 59.508 50.000 0.00 0.00 0.00 3.97
1533 2060 6.921857 CAGTGAATGTTTCTTTCAATGAGCTT 59.078 34.615 15.45 0.00 46.57 3.74
1566 2093 0.539438 CTGCTGGCAACTGGGGTAAA 60.539 55.000 0.00 0.00 35.79 2.01
1626 2153 0.473755 AGTTGTGCACACATCCTGGA 59.526 50.000 21.56 0.00 41.52 3.86
1642 2169 0.961019 TGGAAATGCACCTTGCTCAC 59.039 50.000 0.00 0.00 45.31 3.51
1662 2192 2.036733 ACAAGATCGGTCTCGGAAAACA 59.963 45.455 0.00 0.00 36.95 2.83
1663 2193 2.656560 AGATCGGTCTCGGAAAACAG 57.343 50.000 0.00 0.00 36.95 3.16
1670 2200 2.224450 GGTCTCGGAAAACAGGAAGGAA 60.224 50.000 0.00 0.00 0.00 3.36
1689 2219 4.989168 AGGAAGAACACACAAGTTATCGTC 59.011 41.667 0.00 0.00 0.00 4.20
1727 2257 6.658816 TCAACATTCATAGTTATGGTTGCTGT 59.341 34.615 11.60 3.11 35.36 4.40
1761 2294 3.901222 TCCACTACATTGTGAAGAGGTCA 59.099 43.478 0.00 0.00 40.12 4.02
2104 2637 3.358076 GAGGGGACGCTGTTCGAGG 62.358 68.421 0.00 0.00 41.67 4.63
2223 2756 1.272592 TGTGTGCCCATGATTGTCCAT 60.273 47.619 0.00 0.00 0.00 3.41
2352 2885 2.280592 GTCGTCGTTGGCACCCTT 60.281 61.111 0.00 0.00 0.00 3.95
2444 3000 9.584839 GCATTTTATGTTTCTGTGAAATGTTTC 57.415 29.630 0.00 0.00 37.03 2.78
2468 3024 8.934023 TCTATGAAAAGTTCAGGGTTAACAAT 57.066 30.769 8.10 0.00 43.98 2.71
2481 3047 8.735315 TCAGGGTTAACAATAACATATGTTGTG 58.265 33.333 27.62 24.82 41.86 3.33
2519 3085 1.025647 GGTACTCGACGAGGCTGACT 61.026 60.000 27.39 9.05 33.35 3.41
2717 3286 2.895865 CCTGAGCATGAGCAGGCG 60.896 66.667 17.83 0.79 44.53 5.52
2735 3304 0.669318 CGAAGGCGCTGGACTTGTTA 60.669 55.000 7.64 0.00 43.21 2.41
2739 3308 1.279271 AGGCGCTGGACTTGTTAGATT 59.721 47.619 7.64 0.00 0.00 2.40
2798 3367 1.817209 GTCGATGAGGGAGGTGGTC 59.183 63.158 0.00 0.00 0.00 4.02
2847 3416 8.813951 AGAGTATCATCATTTCAGAGCATCATA 58.186 33.333 0.00 0.00 35.12 2.15
2849 3418 9.438228 AGTATCATCATTTCAGAGCATCATAAG 57.562 33.333 0.00 0.00 37.82 1.73
2879 3457 1.001378 AGTGAACCGTTGCAGCATTTC 60.001 47.619 0.00 2.92 0.00 2.17
2880 3458 1.028130 TGAACCGTTGCAGCATTTCA 58.972 45.000 9.05 9.05 0.00 2.69
2881 3459 1.612950 TGAACCGTTGCAGCATTTCAT 59.387 42.857 9.05 0.00 0.00 2.57
2882 3460 2.816672 TGAACCGTTGCAGCATTTCATA 59.183 40.909 9.05 0.00 0.00 2.15
2883 3461 3.119884 TGAACCGTTGCAGCATTTCATAG 60.120 43.478 9.05 0.00 0.00 2.23
2884 3462 2.710377 ACCGTTGCAGCATTTCATAGA 58.290 42.857 0.00 0.00 0.00 1.98
2885 3463 2.679837 ACCGTTGCAGCATTTCATAGAG 59.320 45.455 0.00 0.00 0.00 2.43
2886 3464 2.540361 CCGTTGCAGCATTTCATAGAGC 60.540 50.000 0.00 0.00 0.00 4.09
2887 3465 2.353889 CGTTGCAGCATTTCATAGAGCT 59.646 45.455 0.00 0.00 37.95 4.09
2899 3477 2.302733 TCATAGAGCTGCAAACCAGACA 59.697 45.455 1.02 0.00 44.64 3.41
2908 3486 3.156293 TGCAAACCAGACATAACTGCAT 58.844 40.909 0.00 0.00 36.67 3.96
2943 3521 1.260561 GTATGGAATTGCGCTGTACGG 59.739 52.381 9.73 0.00 43.93 4.02
2944 3522 1.714899 ATGGAATTGCGCTGTACGGC 61.715 55.000 17.12 17.12 43.93 5.68
2964 3542 2.966590 TGTGCGCCACATACGAGA 59.033 55.556 4.18 0.00 39.62 4.04
2965 3543 1.515487 TGTGCGCCACATACGAGAT 59.485 52.632 4.18 0.00 39.62 2.75
2966 3544 0.108377 TGTGCGCCACATACGAGATT 60.108 50.000 4.18 0.00 39.62 2.40
2968 3546 0.174617 TGCGCCACATACGAGATTCA 59.825 50.000 4.18 0.00 0.00 2.57
2972 3553 1.473257 GCCACATACGAGATTCAGGCA 60.473 52.381 0.00 0.00 40.50 4.75
2990 3571 1.857837 GCAATGTGGTTTTGTTCCGTG 59.142 47.619 0.00 0.00 0.00 4.94
2993 3574 1.178276 TGTGGTTTTGTTCCGTGCTT 58.822 45.000 0.00 0.00 0.00 3.91
3001 3582 1.295792 TGTTCCGTGCTTCTGTTCAC 58.704 50.000 0.00 0.00 0.00 3.18
3002 3583 0.586802 GTTCCGTGCTTCTGTTCACC 59.413 55.000 0.00 0.00 0.00 4.02
3003 3584 0.179234 TTCCGTGCTTCTGTTCACCA 59.821 50.000 0.00 0.00 0.00 4.17
3004 3585 0.531974 TCCGTGCTTCTGTTCACCAC 60.532 55.000 0.00 0.00 0.00 4.16
3005 3586 0.532862 CCGTGCTTCTGTTCACCACT 60.533 55.000 0.00 0.00 0.00 4.00
3011 3692 2.917933 CTTCTGTTCACCACTGACCAA 58.082 47.619 0.00 0.00 33.32 3.67
3054 3735 2.673368 GCAAGTTGGGACGAACATAGAG 59.327 50.000 4.75 0.00 0.00 2.43
3063 3744 3.428999 GGACGAACATAGAGCTGCTTGTA 60.429 47.826 2.53 0.00 0.00 2.41
3091 3786 0.826715 GAGTGCCTGACATCCTGCTA 59.173 55.000 0.00 0.00 0.00 3.49
3094 3789 1.757118 GTGCCTGACATCCTGCTAGTA 59.243 52.381 0.00 0.00 0.00 1.82
3099 3794 3.957497 CCTGACATCCTGCTAGTAACTCT 59.043 47.826 0.00 0.00 0.00 3.24
3120 3815 5.680619 TCTTTGAACTGCTTGTCTTTCCTA 58.319 37.500 0.00 0.00 0.00 2.94
3134 3829 5.172205 GTCTTTCCTAGTCATCCTGAACAC 58.828 45.833 0.00 0.00 0.00 3.32
3150 3845 5.639082 CCTGAACACAATTTAGAATTTGGGC 59.361 40.000 0.24 0.00 29.07 5.36
3155 3850 4.931002 CACAATTTAGAATTTGGGCCAGTG 59.069 41.667 6.23 2.83 0.00 3.66
3157 3852 2.230130 TTAGAATTTGGGCCAGTGGG 57.770 50.000 12.15 0.00 37.18 4.61
3158 3853 1.377690 TAGAATTTGGGCCAGTGGGA 58.622 50.000 12.15 0.00 35.59 4.37
3194 3889 9.507329 AACTGACATATACAACAGAAATCAACT 57.493 29.630 0.00 0.00 34.88 3.16
3195 3890 8.939929 ACTGACATATACAACAGAAATCAACTG 58.060 33.333 0.00 0.00 40.68 3.16
3197 3892 7.088589 ACATATACAACAGAAATCAACTGGC 57.911 36.000 0.00 0.00 39.38 4.85
3199 3894 1.608590 ACAACAGAAATCAACTGGCCG 59.391 47.619 0.00 0.00 39.38 6.13
3200 3895 1.879380 CAACAGAAATCAACTGGCCGA 59.121 47.619 0.00 0.00 39.38 5.54
3220 3923 5.143916 CGAAATTCTGATTCGGTCGATTT 57.856 39.130 5.69 2.17 44.36 2.17
3231 3934 0.462047 GGTCGATTTCCCTCGCACAT 60.462 55.000 0.00 0.00 38.52 3.21
3235 3938 0.819666 GATTTCCCTCGCACATCCCC 60.820 60.000 0.00 0.00 0.00 4.81
3242 3945 0.812811 CTCGCACATCCCCACTCATG 60.813 60.000 0.00 0.00 0.00 3.07
3274 3977 5.123027 TCACAAACAATTTGAAGCCCAAAAC 59.877 36.000 8.24 0.00 46.64 2.43
3275 3978 5.006386 ACAAACAATTTGAAGCCCAAAACA 58.994 33.333 8.24 0.00 46.64 2.83
3276 3979 5.106357 ACAAACAATTTGAAGCCCAAAACAC 60.106 36.000 8.24 0.00 46.64 3.32
3277 3980 4.486125 ACAATTTGAAGCCCAAAACACT 57.514 36.364 2.79 0.00 46.64 3.55
3278 3981 5.606348 ACAATTTGAAGCCCAAAACACTA 57.394 34.783 2.79 0.00 46.64 2.74
3279 3982 5.983540 ACAATTTGAAGCCCAAAACACTAA 58.016 33.333 2.79 0.00 46.64 2.24
3280 3983 6.591001 ACAATTTGAAGCCCAAAACACTAAT 58.409 32.000 2.79 0.00 46.64 1.73
3281 3984 7.053498 ACAATTTGAAGCCCAAAACACTAATT 58.947 30.769 2.79 0.00 46.64 1.40
3282 3985 7.012232 ACAATTTGAAGCCCAAAACACTAATTG 59.988 33.333 2.79 0.00 46.64 2.32
3283 3986 4.599047 TGAAGCCCAAAACACTAATTGG 57.401 40.909 0.00 0.00 44.61 3.16
3290 3993 5.059404 CCAAAACACTAATTGGGCTGTAG 57.941 43.478 0.00 0.00 41.93 2.74
3291 3994 4.485163 CAAAACACTAATTGGGCTGTAGC 58.515 43.478 0.00 0.00 41.14 3.58
3292 3995 3.433306 AACACTAATTGGGCTGTAGCA 57.567 42.857 6.18 0.00 44.36 3.49
3293 3996 3.652057 ACACTAATTGGGCTGTAGCAT 57.348 42.857 6.18 0.00 44.36 3.79
3294 3997 3.545703 ACACTAATTGGGCTGTAGCATC 58.454 45.455 6.18 0.00 44.36 3.91
3295 3998 3.054434 ACACTAATTGGGCTGTAGCATCA 60.054 43.478 6.18 0.96 44.36 3.07
3296 3999 3.947196 CACTAATTGGGCTGTAGCATCAA 59.053 43.478 6.18 9.70 44.36 2.57
3297 4000 4.036027 CACTAATTGGGCTGTAGCATCAAG 59.964 45.833 6.18 1.80 44.36 3.02
3298 4001 3.370840 AATTGGGCTGTAGCATCAAGA 57.629 42.857 6.18 0.00 44.36 3.02
3299 4002 2.877097 TTGGGCTGTAGCATCAAGAA 57.123 45.000 6.18 0.00 44.36 2.52
3300 4003 2.408271 TGGGCTGTAGCATCAAGAAG 57.592 50.000 6.18 0.00 44.36 2.85
3301 4004 1.065199 TGGGCTGTAGCATCAAGAAGG 60.065 52.381 6.18 0.00 44.36 3.46
3302 4005 1.020437 GGCTGTAGCATCAAGAAGGC 58.980 55.000 6.18 0.00 44.36 4.35
3303 4006 1.679944 GGCTGTAGCATCAAGAAGGCA 60.680 52.381 6.18 0.00 44.36 4.75
3304 4007 1.399791 GCTGTAGCATCAAGAAGGCAC 59.600 52.381 0.00 0.00 41.59 5.01
3305 4008 2.703416 CTGTAGCATCAAGAAGGCACA 58.297 47.619 0.00 0.00 0.00 4.57
3306 4009 3.276857 CTGTAGCATCAAGAAGGCACAT 58.723 45.455 0.00 0.00 0.00 3.21
3307 4010 3.011818 TGTAGCATCAAGAAGGCACATG 58.988 45.455 0.00 0.00 0.00 3.21
3308 4011 2.211250 AGCATCAAGAAGGCACATGT 57.789 45.000 0.00 0.00 0.00 3.21
3309 4012 2.522185 AGCATCAAGAAGGCACATGTT 58.478 42.857 0.00 0.00 0.00 2.71
3310 4013 2.895404 AGCATCAAGAAGGCACATGTTT 59.105 40.909 0.00 0.00 0.00 2.83
3311 4014 3.057033 AGCATCAAGAAGGCACATGTTTC 60.057 43.478 0.00 0.00 0.00 2.78
3312 4015 3.841643 CATCAAGAAGGCACATGTTTCC 58.158 45.455 0.00 0.00 0.00 3.13
3313 4016 2.238521 TCAAGAAGGCACATGTTTCCC 58.761 47.619 9.65 4.86 0.00 3.97
3314 4017 1.962807 CAAGAAGGCACATGTTTCCCA 59.037 47.619 9.65 0.00 0.00 4.37
3315 4018 2.364970 CAAGAAGGCACATGTTTCCCAA 59.635 45.455 9.65 0.00 0.00 4.12
3316 4019 2.676748 AGAAGGCACATGTTTCCCAAA 58.323 42.857 9.65 0.00 0.00 3.28
3317 4020 3.037549 AGAAGGCACATGTTTCCCAAAA 58.962 40.909 9.65 0.00 0.00 2.44
3318 4021 3.454082 AGAAGGCACATGTTTCCCAAAAA 59.546 39.130 9.65 0.00 0.00 1.94
3354 4057 7.775397 AAAATGCACTGGAATTGTAATATGC 57.225 32.000 0.00 0.00 0.00 3.14
3355 4058 6.468333 AATGCACTGGAATTGTAATATGCA 57.532 33.333 0.00 0.00 45.08 3.96
3356 4059 5.911378 TGCACTGGAATTGTAATATGCAA 57.089 34.783 0.00 0.00 38.78 4.08
3357 4060 6.278172 TGCACTGGAATTGTAATATGCAAA 57.722 33.333 0.00 0.00 38.78 3.68
3358 4061 6.331845 TGCACTGGAATTGTAATATGCAAAG 58.668 36.000 0.00 0.00 38.78 2.77
3359 4062 6.152492 TGCACTGGAATTGTAATATGCAAAGA 59.848 34.615 0.00 0.00 38.78 2.52
3360 4063 7.035004 GCACTGGAATTGTAATATGCAAAGAA 58.965 34.615 0.00 0.00 0.00 2.52
3361 4064 7.707893 GCACTGGAATTGTAATATGCAAAGAAT 59.292 33.333 0.00 0.00 0.00 2.40
3378 4081 9.389755 TGCAAAGAATAAGTACATAATAGTGCA 57.610 29.630 0.00 0.00 32.78 4.57
3434 4137 3.435590 GCACATATGCCCATGCGT 58.564 55.556 1.58 0.00 46.97 5.24
3435 4138 1.735360 GCACATATGCCCATGCGTT 59.265 52.632 1.58 0.00 46.97 4.84
3436 4139 0.595567 GCACATATGCCCATGCGTTG 60.596 55.000 1.58 0.00 46.97 4.10
3437 4140 0.595567 CACATATGCCCATGCGTTGC 60.596 55.000 1.58 0.00 41.78 4.17
3438 4141 1.036481 ACATATGCCCATGCGTTGCA 61.036 50.000 1.58 2.57 44.86 4.08
3439 4142 0.102663 CATATGCCCATGCGTTGCAA 59.897 50.000 0.00 0.00 43.62 4.08
3440 4143 0.102844 ATATGCCCATGCGTTGCAAC 59.897 50.000 19.89 19.89 43.62 4.17
3475 4178 3.988379 TTTTGCAACAACTAGCAGGAG 57.012 42.857 0.00 0.00 42.39 3.69
3476 4179 2.928801 TTGCAACAACTAGCAGGAGA 57.071 45.000 0.00 0.00 42.39 3.71
3477 4180 2.462456 TGCAACAACTAGCAGGAGAG 57.538 50.000 0.00 0.00 35.51 3.20
3478 4181 1.970640 TGCAACAACTAGCAGGAGAGA 59.029 47.619 0.00 0.00 35.51 3.10
3479 4182 2.568956 TGCAACAACTAGCAGGAGAGAT 59.431 45.455 0.00 0.00 35.51 2.75
3480 4183 3.769300 TGCAACAACTAGCAGGAGAGATA 59.231 43.478 0.00 0.00 35.51 1.98
3481 4184 4.222810 TGCAACAACTAGCAGGAGAGATAA 59.777 41.667 0.00 0.00 35.51 1.75
3482 4185 5.104776 TGCAACAACTAGCAGGAGAGATAAT 60.105 40.000 0.00 0.00 35.51 1.28
3483 4186 5.819901 GCAACAACTAGCAGGAGAGATAATT 59.180 40.000 0.00 0.00 0.00 1.40
3484 4187 6.238320 GCAACAACTAGCAGGAGAGATAATTG 60.238 42.308 0.00 0.00 0.00 2.32
3485 4188 6.798427 ACAACTAGCAGGAGAGATAATTGA 57.202 37.500 0.00 0.00 0.00 2.57
3486 4189 7.372260 ACAACTAGCAGGAGAGATAATTGAT 57.628 36.000 0.00 0.00 0.00 2.57
3487 4190 7.215789 ACAACTAGCAGGAGAGATAATTGATG 58.784 38.462 0.00 0.00 0.00 3.07
3488 4191 6.992664 ACTAGCAGGAGAGATAATTGATGT 57.007 37.500 0.00 0.00 0.00 3.06
3489 4192 6.757237 ACTAGCAGGAGAGATAATTGATGTG 58.243 40.000 0.00 0.00 0.00 3.21
3490 4193 5.627182 AGCAGGAGAGATAATTGATGTGT 57.373 39.130 0.00 0.00 0.00 3.72
3491 4194 5.999044 AGCAGGAGAGATAATTGATGTGTT 58.001 37.500 0.00 0.00 0.00 3.32
3492 4195 6.054295 AGCAGGAGAGATAATTGATGTGTTC 58.946 40.000 0.00 0.00 0.00 3.18
3493 4196 5.819379 GCAGGAGAGATAATTGATGTGTTCA 59.181 40.000 0.00 0.00 0.00 3.18
3494 4197 6.485984 GCAGGAGAGATAATTGATGTGTTCAT 59.514 38.462 0.00 0.00 33.34 2.57
3508 4211 7.572502 GATGTGTTCATCAAAAATTGTCTCC 57.427 36.000 3.72 0.00 46.78 3.71
3509 4212 6.462552 TGTGTTCATCAAAAATTGTCTCCA 57.537 33.333 0.00 0.00 0.00 3.86
3510 4213 6.272318 TGTGTTCATCAAAAATTGTCTCCAC 58.728 36.000 0.00 0.00 0.00 4.02
3511 4214 5.399301 GTGTTCATCAAAAATTGTCTCCACG 59.601 40.000 0.00 0.00 0.00 4.94
3512 4215 4.764679 TCATCAAAAATTGTCTCCACGG 57.235 40.909 0.00 0.00 0.00 4.94
3513 4216 3.057596 TCATCAAAAATTGTCTCCACGGC 60.058 43.478 0.00 0.00 0.00 5.68
3514 4217 1.265635 TCAAAAATTGTCTCCACGGCG 59.734 47.619 4.80 4.80 0.00 6.46
3515 4218 0.596082 AAAAATTGTCTCCACGGCGG 59.404 50.000 13.24 0.00 0.00 6.13
3516 4219 0.536460 AAAATTGTCTCCACGGCGGT 60.536 50.000 13.24 0.00 35.57 5.68
3517 4220 1.234615 AAATTGTCTCCACGGCGGTG 61.235 55.000 16.93 16.93 43.99 4.94
3527 4230 4.742201 CGGCGGTGGGTGACAGAG 62.742 72.222 0.00 0.00 0.00 3.35
3530 4233 3.680786 CGGTGGGTGACAGAGCGA 61.681 66.667 0.00 0.00 37.40 4.93
3531 4234 2.262915 GGTGGGTGACAGAGCGAG 59.737 66.667 0.00 0.00 0.00 5.03
3532 4235 2.262915 GTGGGTGACAGAGCGAGG 59.737 66.667 0.00 0.00 0.00 4.63
3533 4236 2.117423 TGGGTGACAGAGCGAGGA 59.883 61.111 0.00 0.00 0.00 3.71
3534 4237 1.979155 TGGGTGACAGAGCGAGGAG 60.979 63.158 0.00 0.00 0.00 3.69
3544 4247 4.443266 GCGAGGAGCTGCGGTCTT 62.443 66.667 0.00 0.00 44.04 3.01
3545 4248 2.202676 CGAGGAGCTGCGGTCTTC 60.203 66.667 0.00 8.89 33.78 2.87
3546 4249 2.705821 CGAGGAGCTGCGGTCTTCT 61.706 63.158 14.25 7.60 34.72 2.85
3547 4250 1.594310 GAGGAGCTGCGGTCTTCTT 59.406 57.895 0.00 0.00 34.20 2.52
3548 4251 0.818296 GAGGAGCTGCGGTCTTCTTA 59.182 55.000 0.00 0.00 34.20 2.10
3549 4252 0.533032 AGGAGCTGCGGTCTTCTTAC 59.467 55.000 0.00 0.00 0.00 2.34
3550 4253 0.802607 GGAGCTGCGGTCTTCTTACG 60.803 60.000 0.00 0.00 0.00 3.18
3551 4254 0.109226 GAGCTGCGGTCTTCTTACGT 60.109 55.000 0.00 0.00 0.00 3.57
3552 4255 0.388649 AGCTGCGGTCTTCTTACGTG 60.389 55.000 0.00 0.00 0.00 4.49
3553 4256 0.666577 GCTGCGGTCTTCTTACGTGT 60.667 55.000 0.00 0.00 0.00 4.49
3554 4257 1.337821 CTGCGGTCTTCTTACGTGTC 58.662 55.000 0.00 0.00 0.00 3.67
3555 4258 0.669619 TGCGGTCTTCTTACGTGTCA 59.330 50.000 0.00 0.00 0.00 3.58
3556 4259 1.271379 TGCGGTCTTCTTACGTGTCAT 59.729 47.619 0.00 0.00 0.00 3.06
3557 4260 1.654105 GCGGTCTTCTTACGTGTCATG 59.346 52.381 0.00 0.00 0.00 3.07
3558 4261 2.925306 GCGGTCTTCTTACGTGTCATGT 60.925 50.000 0.00 2.65 0.00 3.21
3559 4262 3.314553 CGGTCTTCTTACGTGTCATGTT 58.685 45.455 2.34 0.00 0.00 2.71
3560 4263 3.739300 CGGTCTTCTTACGTGTCATGTTT 59.261 43.478 2.34 0.00 0.00 2.83
3561 4264 4.376008 CGGTCTTCTTACGTGTCATGTTTG 60.376 45.833 2.34 0.00 0.00 2.93
3562 4265 4.084013 GGTCTTCTTACGTGTCATGTTTGG 60.084 45.833 2.34 0.00 0.00 3.28
3563 4266 3.496884 TCTTCTTACGTGTCATGTTTGGC 59.503 43.478 2.34 0.00 0.00 4.52
3564 4267 2.147958 TCTTACGTGTCATGTTTGGCC 58.852 47.619 2.34 0.00 0.00 5.36
3565 4268 1.199097 CTTACGTGTCATGTTTGGCCC 59.801 52.381 0.00 0.00 0.00 5.80
3566 4269 0.108774 TACGTGTCATGTTTGGCCCA 59.891 50.000 0.00 0.00 0.00 5.36
3567 4270 1.285641 CGTGTCATGTTTGGCCCAC 59.714 57.895 0.00 0.00 0.00 4.61
3568 4271 1.285641 GTGTCATGTTTGGCCCACG 59.714 57.895 0.00 0.00 0.00 4.94
3569 4272 1.149401 TGTCATGTTTGGCCCACGA 59.851 52.632 0.00 0.00 0.00 4.35
3570 4273 0.466372 TGTCATGTTTGGCCCACGAA 60.466 50.000 0.00 0.00 0.00 3.85
3571 4274 0.671251 GTCATGTTTGGCCCACGAAA 59.329 50.000 0.00 0.00 0.00 3.46
3572 4275 1.272212 GTCATGTTTGGCCCACGAAAT 59.728 47.619 0.00 0.00 0.00 2.17
3573 4276 1.967066 TCATGTTTGGCCCACGAAATT 59.033 42.857 0.00 0.00 0.00 1.82
3574 4277 2.366916 TCATGTTTGGCCCACGAAATTT 59.633 40.909 0.00 0.00 0.00 1.82
3575 4278 2.990066 TGTTTGGCCCACGAAATTTT 57.010 40.000 0.00 0.00 0.00 1.82
3576 4279 2.555199 TGTTTGGCCCACGAAATTTTG 58.445 42.857 0.00 3.73 0.00 2.44
3577 4280 2.168521 TGTTTGGCCCACGAAATTTTGA 59.831 40.909 12.54 0.00 0.00 2.69
3578 4281 3.181461 TGTTTGGCCCACGAAATTTTGAT 60.181 39.130 12.54 0.00 0.00 2.57
3579 4282 4.039245 TGTTTGGCCCACGAAATTTTGATA 59.961 37.500 12.54 0.00 0.00 2.15
3580 4283 4.448537 TTGGCCCACGAAATTTTGATAG 57.551 40.909 12.54 2.04 0.00 2.08
3581 4284 3.426615 TGGCCCACGAAATTTTGATAGT 58.573 40.909 12.54 0.00 0.00 2.12
3582 4285 3.192422 TGGCCCACGAAATTTTGATAGTG 59.808 43.478 12.54 8.17 0.00 2.74
3583 4286 3.442273 GGCCCACGAAATTTTGATAGTGA 59.558 43.478 12.54 0.00 0.00 3.41
3584 4287 4.097892 GGCCCACGAAATTTTGATAGTGAT 59.902 41.667 12.54 0.00 0.00 3.06
3585 4288 5.036737 GCCCACGAAATTTTGATAGTGATG 58.963 41.667 12.54 0.00 0.00 3.07
3586 4289 5.581605 CCCACGAAATTTTGATAGTGATGG 58.418 41.667 12.54 7.13 0.00 3.51
3587 4290 5.450412 CCCACGAAATTTTGATAGTGATGGG 60.450 44.000 12.54 12.00 36.22 4.00
3588 4291 5.450412 CCACGAAATTTTGATAGTGATGGGG 60.450 44.000 12.54 0.00 0.00 4.96
3589 4292 5.125417 CACGAAATTTTGATAGTGATGGGGT 59.875 40.000 12.54 0.00 0.00 4.95
3590 4293 5.714806 ACGAAATTTTGATAGTGATGGGGTT 59.285 36.000 12.54 0.00 0.00 4.11
3591 4294 6.035843 CGAAATTTTGATAGTGATGGGGTTG 58.964 40.000 0.00 0.00 0.00 3.77
3592 4295 5.937975 AATTTTGATAGTGATGGGGTTGG 57.062 39.130 0.00 0.00 0.00 3.77
3593 4296 4.396357 TTTTGATAGTGATGGGGTTGGT 57.604 40.909 0.00 0.00 0.00 3.67
3594 4297 3.644966 TTGATAGTGATGGGGTTGGTC 57.355 47.619 0.00 0.00 0.00 4.02
3595 4298 1.484653 TGATAGTGATGGGGTTGGTCG 59.515 52.381 0.00 0.00 0.00 4.79
3596 4299 0.837272 ATAGTGATGGGGTTGGTCGG 59.163 55.000 0.00 0.00 0.00 4.79
3597 4300 1.906105 TAGTGATGGGGTTGGTCGGC 61.906 60.000 0.00 0.00 0.00 5.54
3598 4301 4.402528 TGATGGGGTTGGTCGGCG 62.403 66.667 0.00 0.00 0.00 6.46
3599 4302 4.404098 GATGGGGTTGGTCGGCGT 62.404 66.667 6.85 0.00 0.00 5.68
3600 4303 4.715523 ATGGGGTTGGTCGGCGTG 62.716 66.667 6.85 0.00 0.00 5.34
3602 4305 4.404098 GGGGTTGGTCGGCGTGAT 62.404 66.667 6.85 0.00 0.00 3.06
3603 4306 3.124921 GGGTTGGTCGGCGTGATG 61.125 66.667 6.85 0.00 0.00 3.07
3604 4307 3.124921 GGTTGGTCGGCGTGATGG 61.125 66.667 6.85 0.00 0.00 3.51
3605 4308 3.799755 GTTGGTCGGCGTGATGGC 61.800 66.667 6.85 0.00 40.44 4.40
3614 4317 4.386951 CGTGATGGCGACCACCCA 62.387 66.667 0.50 0.72 35.80 4.51
3615 4318 2.033448 GTGATGGCGACCACCCAA 59.967 61.111 0.50 0.00 35.80 4.12
3616 4319 1.378514 GTGATGGCGACCACCCAAT 60.379 57.895 0.50 0.00 35.80 3.16
3617 4320 0.965363 GTGATGGCGACCACCCAATT 60.965 55.000 0.50 0.00 35.80 2.32
3618 4321 0.964860 TGATGGCGACCACCCAATTG 60.965 55.000 0.00 0.00 35.80 2.32
3619 4322 1.666209 GATGGCGACCACCCAATTGG 61.666 60.000 18.21 18.21 43.04 3.16
3648 4351 3.955650 TTTTCTCTAGGTTCACCTCCG 57.044 47.619 0.39 0.00 44.77 4.63
3649 4352 2.599408 TTCTCTAGGTTCACCTCCGT 57.401 50.000 0.39 0.00 44.77 4.69
3650 4353 2.125773 TCTCTAGGTTCACCTCCGTC 57.874 55.000 0.39 0.00 44.77 4.79
3651 4354 1.634459 TCTCTAGGTTCACCTCCGTCT 59.366 52.381 0.39 0.00 44.77 4.18
3652 4355 2.041350 TCTCTAGGTTCACCTCCGTCTT 59.959 50.000 0.39 0.00 44.77 3.01
3653 4356 2.164624 CTCTAGGTTCACCTCCGTCTTG 59.835 54.545 0.39 0.00 44.77 3.02
3654 4357 1.204941 CTAGGTTCACCTCCGTCTTGG 59.795 57.143 0.39 0.00 44.77 3.61
3655 4358 0.471211 AGGTTCACCTCCGTCTTGGA 60.471 55.000 0.00 0.00 44.77 3.53
3663 4366 2.523440 TCCGTCTTGGAGTTGTGGT 58.477 52.632 0.00 0.00 43.74 4.16
3664 4367 0.834612 TCCGTCTTGGAGTTGTGGTT 59.165 50.000 0.00 0.00 43.74 3.67
3665 4368 0.944386 CCGTCTTGGAGTTGTGGTTG 59.056 55.000 0.00 0.00 42.00 3.77
3666 4369 0.307760 CGTCTTGGAGTTGTGGTTGC 59.692 55.000 0.00 0.00 0.00 4.17
3667 4370 1.388547 GTCTTGGAGTTGTGGTTGCA 58.611 50.000 0.00 0.00 0.00 4.08
3668 4371 1.956477 GTCTTGGAGTTGTGGTTGCAT 59.044 47.619 0.00 0.00 0.00 3.96
3669 4372 2.030805 GTCTTGGAGTTGTGGTTGCATC 60.031 50.000 0.00 0.00 0.00 3.91
3670 4373 1.270550 CTTGGAGTTGTGGTTGCATCC 59.729 52.381 6.88 6.88 0.00 3.51
3671 4374 0.478072 TGGAGTTGTGGTTGCATCCT 59.522 50.000 14.81 0.00 0.00 3.24
3672 4375 1.168714 GGAGTTGTGGTTGCATCCTC 58.831 55.000 14.81 11.60 0.00 3.71
3673 4376 1.545428 GGAGTTGTGGTTGCATCCTCA 60.545 52.381 14.81 14.02 0.00 3.86
3674 4377 2.440409 GAGTTGTGGTTGCATCCTCAT 58.560 47.619 17.01 5.71 32.25 2.90
3675 4378 2.821969 GAGTTGTGGTTGCATCCTCATT 59.178 45.455 17.01 10.12 32.25 2.57
3676 4379 3.233507 AGTTGTGGTTGCATCCTCATTT 58.766 40.909 17.01 7.74 32.25 2.32
3677 4380 3.006110 AGTTGTGGTTGCATCCTCATTTG 59.994 43.478 17.01 0.00 32.25 2.32
3678 4381 1.894466 TGTGGTTGCATCCTCATTTGG 59.106 47.619 14.81 0.00 0.00 3.28
3679 4382 1.895131 GTGGTTGCATCCTCATTTGGT 59.105 47.619 14.81 0.00 0.00 3.67
3680 4383 2.299867 GTGGTTGCATCCTCATTTGGTT 59.700 45.455 14.81 0.00 0.00 3.67
3681 4384 2.299582 TGGTTGCATCCTCATTTGGTTG 59.700 45.455 14.81 0.00 0.00 3.77
3682 4385 2.299867 GGTTGCATCCTCATTTGGTTGT 59.700 45.455 6.56 0.00 0.00 3.32
3683 4386 3.244181 GGTTGCATCCTCATTTGGTTGTT 60.244 43.478 6.56 0.00 0.00 2.83
3684 4387 3.663995 TGCATCCTCATTTGGTTGTTG 57.336 42.857 0.00 0.00 0.00 3.33
3685 4388 2.288948 TGCATCCTCATTTGGTTGTTGC 60.289 45.455 0.00 0.00 0.00 4.17
3686 4389 2.598589 CATCCTCATTTGGTTGTTGCG 58.401 47.619 0.00 0.00 0.00 4.85
3687 4390 0.313672 TCCTCATTTGGTTGTTGCGC 59.686 50.000 0.00 0.00 0.00 6.09
3688 4391 1.003262 CCTCATTTGGTTGTTGCGCG 61.003 55.000 0.00 0.00 0.00 6.86
3689 4392 0.040514 CTCATTTGGTTGTTGCGCGA 60.041 50.000 12.10 0.00 0.00 5.87
3690 4393 0.595588 TCATTTGGTTGTTGCGCGAT 59.404 45.000 12.10 0.00 0.00 4.58
3691 4394 0.709467 CATTTGGTTGTTGCGCGATG 59.291 50.000 12.10 0.00 0.00 3.84
3692 4395 0.595588 ATTTGGTTGTTGCGCGATGA 59.404 45.000 12.10 0.00 0.00 2.92
3693 4396 0.317436 TTTGGTTGTTGCGCGATGAC 60.317 50.000 12.10 4.98 0.00 3.06
3694 4397 2.123988 TTGGTTGTTGCGCGATGACC 62.124 55.000 12.10 19.96 0.00 4.02
3695 4398 2.325082 GGTTGTTGCGCGATGACCT 61.325 57.895 12.10 0.00 0.00 3.85
3696 4399 1.574428 GTTGTTGCGCGATGACCTT 59.426 52.632 12.10 0.00 0.00 3.50
3697 4400 0.040425 GTTGTTGCGCGATGACCTTT 60.040 50.000 12.10 0.00 0.00 3.11
3698 4401 0.040514 TTGTTGCGCGATGACCTTTG 60.041 50.000 12.10 0.00 0.00 2.77
3699 4402 0.882484 TGTTGCGCGATGACCTTTGA 60.882 50.000 12.10 0.00 0.00 2.69
3700 4403 0.179215 GTTGCGCGATGACCTTTGAG 60.179 55.000 12.10 0.00 0.00 3.02
3701 4404 1.298157 TTGCGCGATGACCTTTGAGG 61.298 55.000 12.10 0.00 42.49 3.86
3702 4405 3.093278 CGCGATGACCTTTGAGGC 58.907 61.111 0.00 0.00 39.63 4.70
3703 4406 1.741401 CGCGATGACCTTTGAGGCA 60.741 57.895 0.00 0.00 39.63 4.75
3704 4407 1.091771 CGCGATGACCTTTGAGGCAT 61.092 55.000 0.00 0.00 39.63 4.40
3705 4408 0.379669 GCGATGACCTTTGAGGCATG 59.620 55.000 8.09 0.00 39.63 4.06
3706 4409 1.019673 CGATGACCTTTGAGGCATGG 58.980 55.000 0.00 4.65 39.63 3.66
3707 4410 1.679944 CGATGACCTTTGAGGCATGGT 60.680 52.381 0.00 0.00 39.63 3.55
3708 4411 2.450476 GATGACCTTTGAGGCATGGTT 58.550 47.619 0.00 0.00 39.63 3.67
3709 4412 1.619654 TGACCTTTGAGGCATGGTTG 58.380 50.000 0.00 0.00 39.63 3.77
3720 4423 1.726853 GCATGGTTGCTTCGACTACT 58.273 50.000 0.00 0.00 45.77 2.57
3721 4424 2.076863 GCATGGTTGCTTCGACTACTT 58.923 47.619 0.00 0.00 45.77 2.24
3722 4425 2.484264 GCATGGTTGCTTCGACTACTTT 59.516 45.455 0.00 0.00 45.77 2.66
3723 4426 3.424962 GCATGGTTGCTTCGACTACTTTC 60.425 47.826 0.00 0.00 45.77 2.62
3724 4427 3.746045 TGGTTGCTTCGACTACTTTCT 57.254 42.857 0.00 0.00 0.00 2.52
3725 4428 3.650139 TGGTTGCTTCGACTACTTTCTC 58.350 45.455 0.00 0.00 0.00 2.87
3726 4429 2.994578 GGTTGCTTCGACTACTTTCTCC 59.005 50.000 0.00 0.00 0.00 3.71
3727 4430 3.306156 GGTTGCTTCGACTACTTTCTCCT 60.306 47.826 0.00 0.00 0.00 3.69
3728 4431 4.082354 GGTTGCTTCGACTACTTTCTCCTA 60.082 45.833 0.00 0.00 0.00 2.94
3729 4432 4.698583 TGCTTCGACTACTTTCTCCTAC 57.301 45.455 0.00 0.00 0.00 3.18
3730 4433 3.442977 TGCTTCGACTACTTTCTCCTACC 59.557 47.826 0.00 0.00 0.00 3.18
3731 4434 3.695556 GCTTCGACTACTTTCTCCTACCT 59.304 47.826 0.00 0.00 0.00 3.08
3732 4435 4.880696 GCTTCGACTACTTTCTCCTACCTA 59.119 45.833 0.00 0.00 0.00 3.08
3733 4436 5.220835 GCTTCGACTACTTTCTCCTACCTAC 60.221 48.000 0.00 0.00 0.00 3.18
3734 4437 4.437239 TCGACTACTTTCTCCTACCTACG 58.563 47.826 0.00 0.00 0.00 3.51
3735 4438 4.160439 TCGACTACTTTCTCCTACCTACGA 59.840 45.833 0.00 0.00 0.00 3.43
3736 4439 4.269844 CGACTACTTTCTCCTACCTACGAC 59.730 50.000 0.00 0.00 0.00 4.34
3737 4440 4.187694 ACTACTTTCTCCTACCTACGACG 58.812 47.826 0.00 0.00 0.00 5.12
3738 4441 3.340814 ACTTTCTCCTACCTACGACGA 57.659 47.619 0.00 0.00 0.00 4.20
3739 4442 3.006247 ACTTTCTCCTACCTACGACGAC 58.994 50.000 0.00 0.00 0.00 4.34
3740 4443 2.029838 TTCTCCTACCTACGACGACC 57.970 55.000 0.00 0.00 0.00 4.79
3741 4444 1.198713 TCTCCTACCTACGACGACCT 58.801 55.000 0.00 0.00 0.00 3.85
3742 4445 2.388735 TCTCCTACCTACGACGACCTA 58.611 52.381 0.00 0.00 0.00 3.08
3743 4446 2.766263 TCTCCTACCTACGACGACCTAA 59.234 50.000 0.00 0.00 0.00 2.69
3744 4447 2.869192 CTCCTACCTACGACGACCTAAC 59.131 54.545 0.00 0.00 0.00 2.34
3745 4448 1.943340 CCTACCTACGACGACCTAACC 59.057 57.143 0.00 0.00 0.00 2.85
3746 4449 1.594862 CTACCTACGACGACCTAACCG 59.405 57.143 0.00 0.00 0.00 4.44
3747 4450 0.036388 ACCTACGACGACCTAACCGA 60.036 55.000 0.00 0.00 0.00 4.69
3748 4451 1.086696 CCTACGACGACCTAACCGAA 58.913 55.000 0.00 0.00 0.00 4.30
3749 4452 1.672881 CCTACGACGACCTAACCGAAT 59.327 52.381 0.00 0.00 0.00 3.34
3750 4453 2.540361 CCTACGACGACCTAACCGAATG 60.540 54.545 0.00 0.00 0.00 2.67
3751 4454 0.171903 ACGACGACCTAACCGAATGG 59.828 55.000 0.00 0.00 42.84 3.16
3752 4455 0.452987 CGACGACCTAACCGAATGGA 59.547 55.000 0.00 0.00 39.21 3.41
3753 4456 1.066605 CGACGACCTAACCGAATGGAT 59.933 52.381 0.00 0.00 39.21 3.41
3754 4457 2.480759 CGACGACCTAACCGAATGGATT 60.481 50.000 0.00 0.00 39.21 3.01
3755 4458 3.243168 CGACGACCTAACCGAATGGATTA 60.243 47.826 0.00 0.00 39.21 1.75
3756 4459 4.047142 GACGACCTAACCGAATGGATTAC 58.953 47.826 0.00 0.00 39.21 1.89
3757 4460 3.703052 ACGACCTAACCGAATGGATTACT 59.297 43.478 0.00 0.00 39.21 2.24
3758 4461 4.889409 ACGACCTAACCGAATGGATTACTA 59.111 41.667 0.00 0.00 39.21 1.82
3759 4462 5.360714 ACGACCTAACCGAATGGATTACTAA 59.639 40.000 0.00 0.00 39.21 2.24
3760 4463 6.041296 ACGACCTAACCGAATGGATTACTAAT 59.959 38.462 0.00 0.00 39.21 1.73
3761 4464 6.927381 CGACCTAACCGAATGGATTACTAATT 59.073 38.462 0.00 0.00 39.21 1.40
3762 4465 7.095774 CGACCTAACCGAATGGATTACTAATTG 60.096 40.741 0.00 0.00 39.21 2.32
3763 4466 7.571025 ACCTAACCGAATGGATTACTAATTGT 58.429 34.615 0.00 0.00 39.21 2.71
3764 4467 8.707449 ACCTAACCGAATGGATTACTAATTGTA 58.293 33.333 0.00 0.00 39.21 2.41
3765 4468 9.204570 CCTAACCGAATGGATTACTAATTGTAG 57.795 37.037 0.00 0.00 39.21 2.74
3766 4469 7.492352 AACCGAATGGATTACTAATTGTAGC 57.508 36.000 0.00 0.00 39.21 3.58
3767 4470 6.827727 ACCGAATGGATTACTAATTGTAGCT 58.172 36.000 0.00 0.00 39.21 3.32
3768 4471 7.280356 ACCGAATGGATTACTAATTGTAGCTT 58.720 34.615 0.00 0.00 39.21 3.74
3769 4472 8.426489 ACCGAATGGATTACTAATTGTAGCTTA 58.574 33.333 0.00 0.00 39.21 3.09
3770 4473 9.436957 CCGAATGGATTACTAATTGTAGCTTAT 57.563 33.333 0.00 0.00 37.49 1.73
3805 4508 8.818141 TTCATAAGCATACTCAGTACATAAGC 57.182 34.615 0.00 0.00 0.00 3.09
3806 4509 7.951591 TCATAAGCATACTCAGTACATAAGCA 58.048 34.615 0.00 0.00 0.00 3.91
3807 4510 8.084684 TCATAAGCATACTCAGTACATAAGCAG 58.915 37.037 0.00 0.00 0.00 4.24
3808 4511 5.207110 AGCATACTCAGTACATAAGCAGG 57.793 43.478 0.00 0.00 0.00 4.85
3809 4512 3.743396 GCATACTCAGTACATAAGCAGGC 59.257 47.826 0.00 0.00 0.00 4.85
3810 4513 4.740634 GCATACTCAGTACATAAGCAGGCA 60.741 45.833 0.00 0.00 0.00 4.75
3811 4514 5.545588 CATACTCAGTACATAAGCAGGCAT 58.454 41.667 0.00 0.00 0.00 4.40
3812 4515 3.801698 ACTCAGTACATAAGCAGGCATG 58.198 45.455 0.00 0.00 0.00 4.06
3813 4516 3.452264 ACTCAGTACATAAGCAGGCATGA 59.548 43.478 0.62 0.00 0.00 3.07
3814 4517 4.080919 ACTCAGTACATAAGCAGGCATGAA 60.081 41.667 0.62 0.00 0.00 2.57
3815 4518 5.039920 TCAGTACATAAGCAGGCATGAAT 57.960 39.130 0.62 0.00 0.00 2.57
3816 4519 6.173427 TCAGTACATAAGCAGGCATGAATA 57.827 37.500 0.62 0.00 0.00 1.75
3817 4520 6.772605 TCAGTACATAAGCAGGCATGAATAT 58.227 36.000 0.62 0.00 0.00 1.28
3818 4521 6.875726 TCAGTACATAAGCAGGCATGAATATC 59.124 38.462 0.62 0.00 0.00 1.63
3819 4522 6.877855 CAGTACATAAGCAGGCATGAATATCT 59.122 38.462 0.62 0.00 0.00 1.98
3820 4523 7.064371 CAGTACATAAGCAGGCATGAATATCTC 59.936 40.741 0.62 0.00 0.00 2.75
3821 4524 6.124316 ACATAAGCAGGCATGAATATCTCT 57.876 37.500 0.62 0.00 0.00 3.10
3822 4525 6.540995 ACATAAGCAGGCATGAATATCTCTT 58.459 36.000 0.62 0.00 0.00 2.85
3823 4526 6.654161 ACATAAGCAGGCATGAATATCTCTTC 59.346 38.462 0.62 0.00 0.00 2.87
3824 4527 4.701651 AGCAGGCATGAATATCTCTTCA 57.298 40.909 0.62 0.00 39.35 3.02
3825 4528 5.244189 AGCAGGCATGAATATCTCTTCAT 57.756 39.130 0.62 0.00 44.66 2.57
3826 4529 5.632118 AGCAGGCATGAATATCTCTTCATT 58.368 37.500 0.62 0.00 41.89 2.57
3827 4530 6.776744 AGCAGGCATGAATATCTCTTCATTA 58.223 36.000 0.62 0.00 41.89 1.90
3828 4531 7.403671 AGCAGGCATGAATATCTCTTCATTAT 58.596 34.615 0.62 0.00 41.89 1.28
3829 4532 7.337184 AGCAGGCATGAATATCTCTTCATTATG 59.663 37.037 0.62 0.00 41.89 1.90
3830 4533 7.336176 GCAGGCATGAATATCTCTTCATTATGA 59.664 37.037 0.62 0.00 41.89 2.15
3831 4534 8.884726 CAGGCATGAATATCTCTTCATTATGAG 58.115 37.037 0.00 0.00 41.89 2.90
3832 4535 8.047911 AGGCATGAATATCTCTTCATTATGAGG 58.952 37.037 0.00 0.00 41.89 3.86
3833 4536 7.282675 GGCATGAATATCTCTTCATTATGAGGG 59.717 40.741 4.52 0.00 41.89 4.30
3834 4537 7.828223 GCATGAATATCTCTTCATTATGAGGGT 59.172 37.037 4.52 0.00 41.89 4.34
3835 4538 9.736414 CATGAATATCTCTTCATTATGAGGGTT 57.264 33.333 4.52 0.00 41.89 4.11
3843 4546 9.218525 TCTCTTCATTATGAGGGTTTATTCTCT 57.781 33.333 4.52 0.00 0.00 3.10
3844 4547 9.844257 CTCTTCATTATGAGGGTTTATTCTCTT 57.156 33.333 4.52 0.00 0.00 2.85
3845 4548 9.838339 TCTTCATTATGAGGGTTTATTCTCTTC 57.162 33.333 4.52 0.00 0.00 2.87
3846 4549 9.618890 CTTCATTATGAGGGTTTATTCTCTTCA 57.381 33.333 0.00 0.00 0.00 3.02
3847 4550 9.973661 TTCATTATGAGGGTTTATTCTCTTCAA 57.026 29.630 0.00 0.00 0.00 2.69
3848 4551 9.396022 TCATTATGAGGGTTTATTCTCTTCAAC 57.604 33.333 0.00 0.00 0.00 3.18
3849 4552 9.401058 CATTATGAGGGTTTATTCTCTTCAACT 57.599 33.333 0.00 0.00 0.00 3.16
3853 4556 9.981460 ATGAGGGTTTATTCTCTTCAACTATTT 57.019 29.630 0.00 0.00 0.00 1.40
3854 4557 9.807921 TGAGGGTTTATTCTCTTCAACTATTTT 57.192 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.372554 GAGGTAGGTGAGCCGGCAC 62.373 68.421 31.54 24.60 40.50 5.01
230 231 2.045280 CCAGCCTATCCAGGTCGAG 58.955 63.158 0.00 0.00 44.68 4.04
241 242 2.102109 TTTTCGACACCGCCAGCCTA 62.102 55.000 0.00 0.00 35.37 3.93
244 245 1.370051 GTTTTTCGACACCGCCAGC 60.370 57.895 0.00 0.00 35.37 4.85
298 299 0.166814 GCATCGTCAAGGACTTGCAC 59.833 55.000 7.18 6.03 38.39 4.57
322 323 2.593436 AACCGGTTGCCGTTCAGG 60.593 61.111 21.56 0.00 46.80 3.86
349 350 2.812178 CCGACGAACCGCGGAATT 60.812 61.111 35.90 17.89 44.39 2.17
441 442 4.899239 CGACCAGCTCCCGGCATC 62.899 72.222 0.00 0.00 44.79 3.91
832 835 2.238646 ACTGAACTGGTTGTGTCCAAGA 59.761 45.455 0.00 0.00 37.01 3.02
833 836 2.355756 CACTGAACTGGTTGTGTCCAAG 59.644 50.000 0.00 0.00 37.01 3.61
877 880 3.244700 CCCTCCACAGAGACTGACATTTT 60.245 47.826 5.76 0.00 43.39 1.82
892 895 1.003233 GTTGAGCCTGACCCTCCAC 60.003 63.158 0.00 0.00 0.00 4.02
925 928 2.632377 TCTTCAGGCAATAAGCTTCCG 58.368 47.619 0.00 0.00 44.79 4.30
928 931 4.205587 CCAGATCTTCAGGCAATAAGCTT 58.794 43.478 3.48 3.48 44.79 3.74
947 953 0.606401 AATCCTGTGTTCGTGCCCAG 60.606 55.000 0.00 0.00 0.00 4.45
1016 1543 1.890510 GGTCCGGCGAAGTTGTTGT 60.891 57.895 9.30 0.00 0.00 3.32
1032 1559 3.122250 GAGCTCGTGCGGTATCGGT 62.122 63.158 0.00 0.00 45.42 4.69
1083 1610 1.080569 GGTAAGCCGGTTCGACGAA 60.081 57.895 6.10 6.10 35.47 3.85
1098 1625 0.752743 CCTGTGGTATCGGTCCGGTA 60.753 60.000 12.29 5.61 0.00 4.02
1116 1643 3.612717 GCCTCTTGCAGTTTTTAAGCTCC 60.613 47.826 0.00 0.00 40.77 4.70
1233 1760 1.098712 TTGTTCCGGCGAGCTTGTTT 61.099 50.000 9.30 0.00 0.00 2.83
1287 1814 2.900106 GCCACCAAGGTCCAGCTCT 61.900 63.158 0.00 0.00 40.61 4.09
1360 1887 5.239306 TGTTGTTGCTAAGGTTCAGATTCTG 59.761 40.000 7.38 7.38 0.00 3.02
1533 2060 4.039092 GCAGGGAGCTGGCCAGAA 62.039 66.667 37.21 0.00 41.15 3.02
1626 2153 3.057033 GATCTTGTGAGCAAGGTGCATTT 60.057 43.478 2.65 0.00 45.34 2.32
1642 2169 2.668457 CTGTTTTCCGAGACCGATCTTG 59.332 50.000 0.00 0.00 34.34 3.02
1662 2192 3.933861 ACTTGTGTGTTCTTCCTTCCT 57.066 42.857 0.00 0.00 0.00 3.36
1663 2193 5.107065 CGATAACTTGTGTGTTCTTCCTTCC 60.107 44.000 0.00 0.00 0.00 3.46
1670 2200 2.729882 GCGACGATAACTTGTGTGTTCT 59.270 45.455 0.00 0.00 0.00 3.01
1712 2242 5.123186 GCACACAATACAGCAACCATAACTA 59.877 40.000 0.00 0.00 0.00 2.24
1716 2246 3.684908 AGCACACAATACAGCAACCATA 58.315 40.909 0.00 0.00 0.00 2.74
1727 2257 6.538381 CACAATGTAGTGGATAGCACACAATA 59.462 38.462 0.00 0.00 41.21 1.90
2104 2637 2.459442 GCGTCCTCTCATGCAGCAC 61.459 63.158 0.00 0.00 0.00 4.40
2223 2756 1.825090 TGCTCGACTTAACGTCCCTA 58.175 50.000 0.00 0.00 39.56 3.53
2232 2765 7.520453 GCATCCATCAAAATATTGCTCGACTTA 60.520 37.037 0.00 0.00 36.45 2.24
2352 2885 1.578897 TACCTGGAGCAATGTAGCCA 58.421 50.000 0.00 0.00 34.23 4.75
2413 2951 8.939201 TTTCACAGAAACATAAAATGCTTCAA 57.061 26.923 5.98 0.00 37.72 2.69
2446 3002 8.919145 TGTTATTGTTAACCCTGAACTTTTCAT 58.081 29.630 2.48 0.00 37.00 2.57
2453 3009 9.567848 CAACATATGTTATTGTTAACCCTGAAC 57.432 33.333 20.39 3.39 37.49 3.18
2468 3024 6.903419 TGAACGCAAATCACAACATATGTTA 58.097 32.000 20.39 6.39 41.46 2.41
2469 3025 5.767269 TGAACGCAAATCACAACATATGTT 58.233 33.333 15.47 15.47 41.46 2.71
2470 3026 5.181056 TCTGAACGCAAATCACAACATATGT 59.819 36.000 1.41 1.41 45.34 2.29
2481 3047 1.135575 CCCTTGCTCTGAACGCAAATC 60.136 52.381 5.92 0.00 45.64 2.17
2487 3053 1.732732 CGAGTACCCTTGCTCTGAACG 60.733 57.143 0.00 0.00 32.49 3.95
2501 3067 0.097325 CAGTCAGCCTCGTCGAGTAC 59.903 60.000 20.37 12.23 0.00 2.73
2519 3085 1.197036 CTGTACACGTCGCTCTTCTCA 59.803 52.381 0.00 0.00 0.00 3.27
2717 3286 1.079503 CTAACAAGTCCAGCGCCTTC 58.920 55.000 2.29 0.00 0.00 3.46
2735 3304 1.741770 GCACGAGACGGCCAAATCT 60.742 57.895 2.24 1.41 0.00 2.40
2798 3367 4.872124 TCGTCAATCCTCATCAAGATGTTG 59.128 41.667 9.66 7.22 39.72 3.33
2847 3416 2.431057 ACGGTTCACTGTCTCACTTCTT 59.569 45.455 0.00 0.00 0.00 2.52
2849 3418 2.510768 ACGGTTCACTGTCTCACTTC 57.489 50.000 0.00 0.00 0.00 3.01
2879 3457 2.703416 TGTCTGGTTTGCAGCTCTATG 58.297 47.619 0.00 0.00 0.00 2.23
2880 3458 3.641434 ATGTCTGGTTTGCAGCTCTAT 57.359 42.857 0.00 0.00 0.00 1.98
2881 3459 4.020218 AGTTATGTCTGGTTTGCAGCTCTA 60.020 41.667 0.00 0.00 0.00 2.43
2882 3460 3.077359 GTTATGTCTGGTTTGCAGCTCT 58.923 45.455 0.00 0.00 0.00 4.09
2883 3461 3.077359 AGTTATGTCTGGTTTGCAGCTC 58.923 45.455 0.00 0.00 0.00 4.09
2884 3462 2.816087 CAGTTATGTCTGGTTTGCAGCT 59.184 45.455 0.00 0.00 0.00 4.24
2885 3463 2.669391 GCAGTTATGTCTGGTTTGCAGC 60.669 50.000 0.00 0.00 36.12 5.25
2886 3464 2.553602 TGCAGTTATGTCTGGTTTGCAG 59.446 45.455 0.00 0.00 35.41 4.41
2887 3465 2.580962 TGCAGTTATGTCTGGTTTGCA 58.419 42.857 0.00 0.00 37.70 4.08
2899 3477 4.165950 TCCATTGGGAGTACATGCAGTTAT 59.834 41.667 2.09 0.00 38.64 1.89
2925 3503 1.714899 GCCGTACAGCGCAATTCCAT 61.715 55.000 11.47 0.00 39.71 3.41
2948 3526 0.577269 GAATCTCGTATGTGGCGCAC 59.423 55.000 10.83 6.37 34.56 5.34
2951 3529 1.491670 CCTGAATCTCGTATGTGGCG 58.508 55.000 0.00 0.00 0.00 5.69
2955 3533 3.873361 CACATTGCCTGAATCTCGTATGT 59.127 43.478 0.00 0.00 0.00 2.29
2957 3535 3.118261 ACCACATTGCCTGAATCTCGTAT 60.118 43.478 0.00 0.00 0.00 3.06
2958 3536 2.236146 ACCACATTGCCTGAATCTCGTA 59.764 45.455 0.00 0.00 0.00 3.43
2959 3537 1.003580 ACCACATTGCCTGAATCTCGT 59.996 47.619 0.00 0.00 0.00 4.18
2960 3538 1.742761 ACCACATTGCCTGAATCTCG 58.257 50.000 0.00 0.00 0.00 4.04
2961 3539 4.240096 CAAAACCACATTGCCTGAATCTC 58.760 43.478 0.00 0.00 0.00 2.75
2962 3540 3.642848 ACAAAACCACATTGCCTGAATCT 59.357 39.130 0.00 0.00 0.00 2.40
2964 3542 4.379652 GAACAAAACCACATTGCCTGAAT 58.620 39.130 0.00 0.00 0.00 2.57
2965 3543 3.431486 GGAACAAAACCACATTGCCTGAA 60.431 43.478 0.00 0.00 0.00 3.02
2966 3544 2.102252 GGAACAAAACCACATTGCCTGA 59.898 45.455 0.00 0.00 0.00 3.86
2968 3546 1.068434 CGGAACAAAACCACATTGCCT 59.932 47.619 0.00 0.00 0.00 4.75
2972 3553 1.754226 AGCACGGAACAAAACCACATT 59.246 42.857 0.00 0.00 0.00 2.71
2990 3571 1.230324 GGTCAGTGGTGAACAGAAGC 58.770 55.000 0.00 0.00 40.52 3.86
3001 3582 0.604578 CAGGCCAAATTGGTCAGTGG 59.395 55.000 19.68 1.41 46.77 4.00
3002 3583 1.619654 TCAGGCCAAATTGGTCAGTG 58.380 50.000 19.68 9.39 46.77 3.66
3003 3584 2.173519 CATCAGGCCAAATTGGTCAGT 58.826 47.619 19.68 0.90 46.77 3.41
3004 3585 1.479323 CCATCAGGCCAAATTGGTCAG 59.521 52.381 19.68 11.27 46.77 3.51
3005 3586 1.203162 ACCATCAGGCCAAATTGGTCA 60.203 47.619 19.68 0.00 46.77 4.02
3011 3692 1.640670 ACCAGTACCATCAGGCCAAAT 59.359 47.619 5.01 0.00 39.06 2.32
3054 3735 3.820777 CTCCAAAGAGTTACAAGCAGC 57.179 47.619 0.00 0.00 35.21 5.25
3077 3758 3.957497 AGAGTTACTAGCAGGATGTCAGG 59.043 47.826 0.00 0.00 39.31 3.86
3078 3759 5.590530 AAGAGTTACTAGCAGGATGTCAG 57.409 43.478 0.00 0.00 39.31 3.51
3079 3760 5.480422 TCAAAGAGTTACTAGCAGGATGTCA 59.520 40.000 0.00 0.00 39.31 3.58
3091 3786 5.675538 AGACAAGCAGTTCAAAGAGTTACT 58.324 37.500 0.00 0.00 0.00 2.24
3094 3789 5.163612 GGAAAGACAAGCAGTTCAAAGAGTT 60.164 40.000 0.00 0.00 0.00 3.01
3099 3794 5.437060 ACTAGGAAAGACAAGCAGTTCAAA 58.563 37.500 0.00 0.00 0.00 2.69
3134 3829 4.506758 CCACTGGCCCAAATTCTAAATTG 58.493 43.478 0.00 0.00 0.00 2.32
3169 3864 8.939929 CAGTTGATTTCTGTTGTATATGTCAGT 58.060 33.333 0.00 0.00 0.00 3.41
3170 3865 8.393366 CCAGTTGATTTCTGTTGTATATGTCAG 58.607 37.037 0.00 0.00 0.00 3.51
3171 3866 7.148255 GCCAGTTGATTTCTGTTGTATATGTCA 60.148 37.037 0.00 0.00 0.00 3.58
3172 3867 7.189512 GCCAGTTGATTTCTGTTGTATATGTC 58.810 38.462 0.00 0.00 0.00 3.06
3173 3868 6.095440 GGCCAGTTGATTTCTGTTGTATATGT 59.905 38.462 0.00 0.00 0.00 2.29
3182 3877 2.270352 TTCGGCCAGTTGATTTCTGT 57.730 45.000 2.24 0.00 0.00 3.41
3183 3878 3.855689 ATTTCGGCCAGTTGATTTCTG 57.144 42.857 2.24 0.00 0.00 3.02
3184 3879 4.082125 AGAATTTCGGCCAGTTGATTTCT 58.918 39.130 2.24 1.35 0.00 2.52
3185 3880 4.082787 TCAGAATTTCGGCCAGTTGATTTC 60.083 41.667 2.24 0.00 0.00 2.17
3186 3881 3.826157 TCAGAATTTCGGCCAGTTGATTT 59.174 39.130 2.24 0.00 0.00 2.17
3188 3883 3.071874 TCAGAATTTCGGCCAGTTGAT 57.928 42.857 2.24 0.00 0.00 2.57
3189 3884 2.559698 TCAGAATTTCGGCCAGTTGA 57.440 45.000 2.24 0.00 0.00 3.18
3190 3885 3.728864 CGAATCAGAATTTCGGCCAGTTG 60.729 47.826 2.24 0.00 41.62 3.16
3191 3886 2.420022 CGAATCAGAATTTCGGCCAGTT 59.580 45.455 2.24 0.00 41.62 3.16
3199 3894 5.502606 GGAAATCGACCGAATCAGAATTTC 58.497 41.667 0.00 0.71 0.00 2.17
3200 3895 4.335594 GGGAAATCGACCGAATCAGAATTT 59.664 41.667 0.00 0.00 0.00 1.82
3214 3917 0.179084 GGATGTGCGAGGGAAATCGA 60.179 55.000 0.00 0.00 45.56 3.59
3218 3921 2.227757 TGGGGATGTGCGAGGGAAA 61.228 57.895 0.00 0.00 0.00 3.13
3220 3923 3.399181 GTGGGGATGTGCGAGGGA 61.399 66.667 0.00 0.00 0.00 4.20
3231 3934 0.040058 AGCAAATGCATGAGTGGGGA 59.960 50.000 0.00 0.00 45.16 4.81
3235 3938 3.291809 TTGTGAGCAAATGCATGAGTG 57.708 42.857 0.00 0.00 45.16 3.51
3242 3945 5.406767 TCAAATTGTTTGTGAGCAAATGC 57.593 34.783 0.00 0.00 45.11 3.56
3274 3977 3.544684 TGATGCTACAGCCCAATTAGTG 58.455 45.455 0.00 0.00 41.18 2.74
3275 3978 3.931907 TGATGCTACAGCCCAATTAGT 57.068 42.857 0.00 0.00 41.18 2.24
3276 3979 4.454678 TCTTGATGCTACAGCCCAATTAG 58.545 43.478 0.00 0.00 41.18 1.73
3277 3980 4.502105 TCTTGATGCTACAGCCCAATTA 57.498 40.909 0.00 0.00 41.18 1.40
3278 3981 3.370840 TCTTGATGCTACAGCCCAATT 57.629 42.857 0.00 0.00 41.18 2.32
3279 3982 3.285484 CTTCTTGATGCTACAGCCCAAT 58.715 45.455 0.00 0.00 41.18 3.16
3280 3983 2.618816 CCTTCTTGATGCTACAGCCCAA 60.619 50.000 0.00 2.85 41.18 4.12
3281 3984 1.065199 CCTTCTTGATGCTACAGCCCA 60.065 52.381 0.00 0.00 41.18 5.36
3282 3985 1.673168 CCTTCTTGATGCTACAGCCC 58.327 55.000 0.00 0.00 41.18 5.19
3283 3986 1.020437 GCCTTCTTGATGCTACAGCC 58.980 55.000 0.00 0.00 41.18 4.85
3284 3987 1.399791 GTGCCTTCTTGATGCTACAGC 59.600 52.381 0.00 0.00 42.50 4.40
3285 3988 2.703416 TGTGCCTTCTTGATGCTACAG 58.297 47.619 0.00 0.00 0.00 2.74
3286 3989 2.857186 TGTGCCTTCTTGATGCTACA 57.143 45.000 0.00 0.00 0.00 2.74
3287 3990 3.012518 ACATGTGCCTTCTTGATGCTAC 58.987 45.455 0.00 0.00 0.00 3.58
3288 3991 3.354948 ACATGTGCCTTCTTGATGCTA 57.645 42.857 0.00 0.00 0.00 3.49
3289 3992 2.211250 ACATGTGCCTTCTTGATGCT 57.789 45.000 0.00 0.00 0.00 3.79
3290 3993 3.248266 GAAACATGTGCCTTCTTGATGC 58.752 45.455 0.00 0.00 0.00 3.91
3291 3994 3.367703 GGGAAACATGTGCCTTCTTGATG 60.368 47.826 15.35 0.00 0.00 3.07
3292 3995 2.827921 GGGAAACATGTGCCTTCTTGAT 59.172 45.455 15.35 0.00 0.00 2.57
3293 3996 2.238521 GGGAAACATGTGCCTTCTTGA 58.761 47.619 15.35 0.00 0.00 3.02
3294 3997 1.962807 TGGGAAACATGTGCCTTCTTG 59.037 47.619 15.35 0.00 0.00 3.02
3295 3998 2.380064 TGGGAAACATGTGCCTTCTT 57.620 45.000 15.35 0.00 0.00 2.52
3296 3999 2.380064 TTGGGAAACATGTGCCTTCT 57.620 45.000 15.35 0.00 0.00 2.85
3297 4000 3.467374 TTTTGGGAAACATGTGCCTTC 57.533 42.857 15.35 8.66 0.00 3.46
3298 4001 3.922171 TTTTTGGGAAACATGTGCCTT 57.078 38.095 15.35 0.00 0.00 4.35
3328 4031 8.971321 GCATATTACAATTCCAGTGCATTTTAG 58.029 33.333 0.00 0.00 0.00 1.85
3329 4032 8.473219 TGCATATTACAATTCCAGTGCATTTTA 58.527 29.630 0.00 0.00 36.54 1.52
3330 4033 7.329499 TGCATATTACAATTCCAGTGCATTTT 58.671 30.769 0.00 0.00 36.54 1.82
3331 4034 6.876155 TGCATATTACAATTCCAGTGCATTT 58.124 32.000 0.00 0.00 36.54 2.32
3332 4035 6.468333 TGCATATTACAATTCCAGTGCATT 57.532 33.333 0.00 0.00 36.54 3.56
3333 4036 6.468333 TTGCATATTACAATTCCAGTGCAT 57.532 33.333 0.00 0.00 40.52 3.96
3334 4037 5.911378 TTGCATATTACAATTCCAGTGCA 57.089 34.783 0.00 0.00 39.31 4.57
3335 4038 6.563422 TCTTTGCATATTACAATTCCAGTGC 58.437 36.000 0.00 0.00 0.00 4.40
3352 4055 9.389755 TGCACTATTATGTACTTATTCTTTGCA 57.610 29.630 0.00 0.00 0.00 4.08
3418 4121 0.595567 GCAACGCATGGGCATATGTG 60.596 55.000 10.10 11.45 42.67 3.21
3419 4122 1.036481 TGCAACGCATGGGCATATGT 61.036 50.000 10.10 0.00 41.24 2.29
3420 4123 0.102663 TTGCAACGCATGGGCATATG 59.897 50.000 10.10 0.00 38.76 1.78
3421 4124 0.102844 GTTGCAACGCATGGGCATAT 59.897 50.000 14.90 0.00 38.76 1.78
3422 4125 1.510383 GTTGCAACGCATGGGCATA 59.490 52.632 14.90 0.00 38.76 3.14
3423 4126 2.262292 GTTGCAACGCATGGGCAT 59.738 55.556 14.90 0.00 38.76 4.40
3424 4127 4.340019 CGTTGCAACGCATGGGCA 62.340 61.111 35.89 0.00 46.06 5.36
3433 4136 3.481112 AAATTATCGTCCCGTTGCAAC 57.519 42.857 19.89 19.89 0.00 4.17
3434 4137 4.506886 AAAAATTATCGTCCCGTTGCAA 57.493 36.364 0.00 0.00 0.00 4.08
3454 4157 3.951037 TCTCCTGCTAGTTGTTGCAAAAA 59.049 39.130 0.00 0.00 38.81 1.94
3455 4158 3.550820 TCTCCTGCTAGTTGTTGCAAAA 58.449 40.909 0.00 0.00 38.81 2.44
3456 4159 3.141398 CTCTCCTGCTAGTTGTTGCAAA 58.859 45.455 0.00 0.00 38.81 3.68
3457 4160 2.368548 TCTCTCCTGCTAGTTGTTGCAA 59.631 45.455 0.00 0.00 38.81 4.08
3458 4161 1.970640 TCTCTCCTGCTAGTTGTTGCA 59.029 47.619 0.00 0.00 37.63 4.08
3459 4162 2.751166 TCTCTCCTGCTAGTTGTTGC 57.249 50.000 0.00 0.00 0.00 4.17
3460 4163 7.044181 TCAATTATCTCTCCTGCTAGTTGTTG 58.956 38.462 0.00 0.00 0.00 3.33
3461 4164 7.187824 TCAATTATCTCTCCTGCTAGTTGTT 57.812 36.000 0.00 0.00 0.00 2.83
3462 4165 6.798427 TCAATTATCTCTCCTGCTAGTTGT 57.202 37.500 0.00 0.00 0.00 3.32
3463 4166 7.171167 CACATCAATTATCTCTCCTGCTAGTTG 59.829 40.741 0.00 0.00 0.00 3.16
3464 4167 7.147585 ACACATCAATTATCTCTCCTGCTAGTT 60.148 37.037 0.00 0.00 0.00 2.24
3465 4168 6.326064 ACACATCAATTATCTCTCCTGCTAGT 59.674 38.462 0.00 0.00 0.00 2.57
3466 4169 6.757237 ACACATCAATTATCTCTCCTGCTAG 58.243 40.000 0.00 0.00 0.00 3.42
3467 4170 6.737720 ACACATCAATTATCTCTCCTGCTA 57.262 37.500 0.00 0.00 0.00 3.49
3468 4171 5.627182 ACACATCAATTATCTCTCCTGCT 57.373 39.130 0.00 0.00 0.00 4.24
3469 4172 5.819379 TGAACACATCAATTATCTCTCCTGC 59.181 40.000 0.00 0.00 34.30 4.85
3470 4173 7.713942 TGATGAACACATCAATTATCTCTCCTG 59.286 37.037 9.92 0.00 44.61 3.86
3471 4174 7.799081 TGATGAACACATCAATTATCTCTCCT 58.201 34.615 9.92 0.00 44.61 3.69
3483 4186 7.147312 GGAGACAATTTTTGATGAACACATCA 58.853 34.615 8.53 8.53 45.48 3.07
3484 4187 7.115378 GTGGAGACAATTTTTGATGAACACATC 59.885 37.037 0.00 0.00 46.06 3.06
3485 4188 6.925165 GTGGAGACAATTTTTGATGAACACAT 59.075 34.615 0.00 0.00 46.06 3.21
3486 4189 6.272318 GTGGAGACAATTTTTGATGAACACA 58.728 36.000 0.00 0.00 46.06 3.72
3487 4190 5.399301 CGTGGAGACAATTTTTGATGAACAC 59.601 40.000 0.00 0.00 46.06 3.32
3488 4191 5.507149 CCGTGGAGACAATTTTTGATGAACA 60.507 40.000 0.00 0.00 46.06 3.18
3489 4192 4.917415 CCGTGGAGACAATTTTTGATGAAC 59.083 41.667 0.00 0.00 46.06 3.18
3490 4193 4.558496 GCCGTGGAGACAATTTTTGATGAA 60.558 41.667 0.00 0.00 46.06 2.57
3491 4194 3.057596 GCCGTGGAGACAATTTTTGATGA 60.058 43.478 0.00 0.00 46.06 2.92
3492 4195 3.244976 GCCGTGGAGACAATTTTTGATG 58.755 45.455 0.00 0.00 46.06 3.07
3493 4196 2.095263 CGCCGTGGAGACAATTTTTGAT 60.095 45.455 0.00 0.00 46.06 2.57
3494 4197 1.265635 CGCCGTGGAGACAATTTTTGA 59.734 47.619 0.00 0.00 46.06 2.69
3495 4198 1.665735 CCGCCGTGGAGACAATTTTTG 60.666 52.381 0.00 0.00 46.06 2.44
3496 4199 0.596082 CCGCCGTGGAGACAATTTTT 59.404 50.000 0.00 0.00 46.06 1.94
3497 4200 0.536460 ACCGCCGTGGAGACAATTTT 60.536 50.000 4.58 0.00 46.06 1.82
3498 4201 1.072505 ACCGCCGTGGAGACAATTT 59.927 52.632 4.58 0.00 46.06 1.82
3499 4202 1.671054 CACCGCCGTGGAGACAATT 60.671 57.895 4.58 0.00 46.06 2.32
3500 4203 2.047274 CACCGCCGTGGAGACAAT 60.047 61.111 4.58 0.00 46.06 2.71
3510 4213 4.742201 CTCTGTCACCCACCGCCG 62.742 72.222 0.00 0.00 0.00 6.46
3513 4216 3.633094 CTCGCTCTGTCACCCACCG 62.633 68.421 0.00 0.00 0.00 4.94
3514 4217 2.262915 CTCGCTCTGTCACCCACC 59.737 66.667 0.00 0.00 0.00 4.61
3515 4218 2.219325 CTCCTCGCTCTGTCACCCAC 62.219 65.000 0.00 0.00 0.00 4.61
3516 4219 1.979155 CTCCTCGCTCTGTCACCCA 60.979 63.158 0.00 0.00 0.00 4.51
3517 4220 2.888863 CTCCTCGCTCTGTCACCC 59.111 66.667 0.00 0.00 0.00 4.61
3518 4221 2.183046 GCTCCTCGCTCTGTCACC 59.817 66.667 0.00 0.00 35.14 4.02
3527 4230 4.443266 AAGACCGCAGCTCCTCGC 62.443 66.667 0.00 0.00 39.57 5.03
3528 4231 2.202676 GAAGACCGCAGCTCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
3529 4232 0.818296 TAAGAAGACCGCAGCTCCTC 59.182 55.000 0.00 0.00 0.00 3.71
3530 4233 0.533032 GTAAGAAGACCGCAGCTCCT 59.467 55.000 0.00 0.00 0.00 3.69
3531 4234 0.802607 CGTAAGAAGACCGCAGCTCC 60.803 60.000 0.00 0.00 43.02 4.70
3532 4235 0.109226 ACGTAAGAAGACCGCAGCTC 60.109 55.000 0.00 0.00 43.62 4.09
3533 4236 0.388649 CACGTAAGAAGACCGCAGCT 60.389 55.000 0.00 0.00 43.62 4.24
3534 4237 0.666577 ACACGTAAGAAGACCGCAGC 60.667 55.000 0.00 0.00 43.62 5.25
3535 4238 1.335597 TGACACGTAAGAAGACCGCAG 60.336 52.381 0.00 0.00 43.62 5.18
3536 4239 0.669619 TGACACGTAAGAAGACCGCA 59.330 50.000 0.00 0.00 43.62 5.69
3537 4240 1.654105 CATGACACGTAAGAAGACCGC 59.346 52.381 0.00 0.00 43.62 5.68
3538 4241 2.942710 ACATGACACGTAAGAAGACCG 58.057 47.619 0.00 0.00 43.62 4.79
3539 4242 4.084013 CCAAACATGACACGTAAGAAGACC 60.084 45.833 0.00 0.00 43.62 3.85
3540 4243 4.610680 GCCAAACATGACACGTAAGAAGAC 60.611 45.833 0.00 0.00 43.62 3.01
3541 4244 3.496884 GCCAAACATGACACGTAAGAAGA 59.503 43.478 0.00 0.00 43.62 2.87
3542 4245 3.364964 GGCCAAACATGACACGTAAGAAG 60.365 47.826 0.00 0.00 43.62 2.85
3543 4246 2.550606 GGCCAAACATGACACGTAAGAA 59.449 45.455 0.00 0.00 43.62 2.52
3544 4247 2.147958 GGCCAAACATGACACGTAAGA 58.852 47.619 0.00 0.00 43.62 2.10
3546 4249 1.240256 GGGCCAAACATGACACGTAA 58.760 50.000 4.39 0.00 0.00 3.18
3547 4250 0.108774 TGGGCCAAACATGACACGTA 59.891 50.000 2.13 0.00 0.00 3.57
3548 4251 1.152860 TGGGCCAAACATGACACGT 60.153 52.632 2.13 0.00 0.00 4.49
3549 4252 1.285641 GTGGGCCAAACATGACACG 59.714 57.895 8.40 0.00 0.00 4.49
3550 4253 1.169661 TCGTGGGCCAAACATGACAC 61.170 55.000 8.40 0.00 0.00 3.67
3551 4254 0.466372 TTCGTGGGCCAAACATGACA 60.466 50.000 8.40 0.00 33.88 3.58
3552 4255 0.671251 TTTCGTGGGCCAAACATGAC 59.329 50.000 8.40 0.00 33.88 3.06
3553 4256 1.626686 ATTTCGTGGGCCAAACATGA 58.373 45.000 8.40 0.97 32.38 3.07
3554 4257 2.453983 AATTTCGTGGGCCAAACATG 57.546 45.000 8.40 0.00 0.00 3.21
3555 4258 3.137533 CAAAATTTCGTGGGCCAAACAT 58.862 40.909 8.40 0.00 0.00 2.71
3556 4259 2.168521 TCAAAATTTCGTGGGCCAAACA 59.831 40.909 8.40 0.00 0.00 2.83
3557 4260 2.827652 TCAAAATTTCGTGGGCCAAAC 58.172 42.857 8.40 0.40 0.00 2.93
3558 4261 3.760580 ATCAAAATTTCGTGGGCCAAA 57.239 38.095 8.40 0.00 0.00 3.28
3559 4262 3.829601 ACTATCAAAATTTCGTGGGCCAA 59.170 39.130 8.40 0.00 0.00 4.52
3560 4263 3.192422 CACTATCAAAATTTCGTGGGCCA 59.808 43.478 0.00 0.00 0.00 5.36
3561 4264 3.442273 TCACTATCAAAATTTCGTGGGCC 59.558 43.478 0.00 0.00 0.00 5.80
3562 4265 4.695217 TCACTATCAAAATTTCGTGGGC 57.305 40.909 0.00 0.00 0.00 5.36
3563 4266 5.450412 CCCATCACTATCAAAATTTCGTGGG 60.450 44.000 0.00 0.00 35.86 4.61
3564 4267 5.450412 CCCCATCACTATCAAAATTTCGTGG 60.450 44.000 0.00 0.00 0.00 4.94
3565 4268 5.125417 ACCCCATCACTATCAAAATTTCGTG 59.875 40.000 0.00 0.00 0.00 4.35
3566 4269 5.261216 ACCCCATCACTATCAAAATTTCGT 58.739 37.500 0.00 0.00 0.00 3.85
3567 4270 5.835113 ACCCCATCACTATCAAAATTTCG 57.165 39.130 0.00 0.00 0.00 3.46
3568 4271 6.070824 ACCAACCCCATCACTATCAAAATTTC 60.071 38.462 0.00 0.00 0.00 2.17
3569 4272 5.784906 ACCAACCCCATCACTATCAAAATTT 59.215 36.000 0.00 0.00 0.00 1.82
3570 4273 5.341169 ACCAACCCCATCACTATCAAAATT 58.659 37.500 0.00 0.00 0.00 1.82
3571 4274 4.946646 ACCAACCCCATCACTATCAAAAT 58.053 39.130 0.00 0.00 0.00 1.82
3572 4275 4.340617 GACCAACCCCATCACTATCAAAA 58.659 43.478 0.00 0.00 0.00 2.44
3573 4276 3.621214 CGACCAACCCCATCACTATCAAA 60.621 47.826 0.00 0.00 0.00 2.69
3574 4277 2.093181 CGACCAACCCCATCACTATCAA 60.093 50.000 0.00 0.00 0.00 2.57
3575 4278 1.484653 CGACCAACCCCATCACTATCA 59.515 52.381 0.00 0.00 0.00 2.15
3576 4279 1.202651 CCGACCAACCCCATCACTATC 60.203 57.143 0.00 0.00 0.00 2.08
3577 4280 0.837272 CCGACCAACCCCATCACTAT 59.163 55.000 0.00 0.00 0.00 2.12
3578 4281 1.906105 GCCGACCAACCCCATCACTA 61.906 60.000 0.00 0.00 0.00 2.74
3579 4282 3.077907 CCGACCAACCCCATCACT 58.922 61.111 0.00 0.00 0.00 3.41
3580 4283 2.750237 GCCGACCAACCCCATCAC 60.750 66.667 0.00 0.00 0.00 3.06
3581 4284 4.402528 CGCCGACCAACCCCATCA 62.403 66.667 0.00 0.00 0.00 3.07
3582 4285 4.404098 ACGCCGACCAACCCCATC 62.404 66.667 0.00 0.00 0.00 3.51
3583 4286 4.715523 CACGCCGACCAACCCCAT 62.716 66.667 0.00 0.00 0.00 4.00
3585 4288 4.404098 ATCACGCCGACCAACCCC 62.404 66.667 0.00 0.00 0.00 4.95
3586 4289 3.124921 CATCACGCCGACCAACCC 61.125 66.667 0.00 0.00 0.00 4.11
3587 4290 3.124921 CCATCACGCCGACCAACC 61.125 66.667 0.00 0.00 0.00 3.77
3588 4291 3.799755 GCCATCACGCCGACCAAC 61.800 66.667 0.00 0.00 0.00 3.77
3597 4300 3.892740 TTGGGTGGTCGCCATCACG 62.893 63.158 10.63 0.00 36.11 4.35
3598 4301 0.965363 AATTGGGTGGTCGCCATCAC 60.965 55.000 10.63 0.00 36.11 3.06
3599 4302 0.964860 CAATTGGGTGGTCGCCATCA 60.965 55.000 10.63 6.25 36.11 3.07
3600 4303 1.666209 CCAATTGGGTGGTCGCCATC 61.666 60.000 17.36 1.43 35.28 3.51
3601 4304 1.682005 CCAATTGGGTGGTCGCCAT 60.682 57.895 17.36 0.00 35.28 4.40
3602 4305 2.282816 CCAATTGGGTGGTCGCCA 60.283 61.111 17.36 0.00 33.63 5.69
3637 4340 2.055299 TCCAAGACGGAGGTGAACC 58.945 57.895 0.00 0.00 39.64 3.62
3645 4348 0.834612 AACCACAACTCCAAGACGGA 59.165 50.000 0.00 0.00 43.61 4.69
3646 4349 0.944386 CAACCACAACTCCAAGACGG 59.056 55.000 0.00 0.00 0.00 4.79
3647 4350 0.307760 GCAACCACAACTCCAAGACG 59.692 55.000 0.00 0.00 0.00 4.18
3648 4351 1.388547 TGCAACCACAACTCCAAGAC 58.611 50.000 0.00 0.00 0.00 3.01
3649 4352 2.229792 GATGCAACCACAACTCCAAGA 58.770 47.619 0.00 0.00 0.00 3.02
3650 4353 1.270550 GGATGCAACCACAACTCCAAG 59.729 52.381 8.36 0.00 0.00 3.61
3651 4354 1.133513 AGGATGCAACCACAACTCCAA 60.134 47.619 16.21 0.00 0.00 3.53
3652 4355 0.478072 AGGATGCAACCACAACTCCA 59.522 50.000 16.21 0.00 0.00 3.86
3653 4356 1.168714 GAGGATGCAACCACAACTCC 58.831 55.000 16.21 2.98 0.00 3.85
3654 4357 1.896220 TGAGGATGCAACCACAACTC 58.104 50.000 16.21 4.06 0.00 3.01
3655 4358 2.592102 ATGAGGATGCAACCACAACT 57.408 45.000 16.55 0.00 34.58 3.16
3656 4359 3.319755 CAAATGAGGATGCAACCACAAC 58.680 45.455 16.55 5.14 34.58 3.32
3657 4360 2.299582 CCAAATGAGGATGCAACCACAA 59.700 45.455 16.55 1.17 34.58 3.33
3658 4361 1.894466 CCAAATGAGGATGCAACCACA 59.106 47.619 15.10 15.10 35.29 4.17
3659 4362 1.895131 ACCAAATGAGGATGCAACCAC 59.105 47.619 16.21 9.75 0.00 4.16
3660 4363 2.299582 CAACCAAATGAGGATGCAACCA 59.700 45.455 16.21 0.00 0.00 3.67
3661 4364 2.299867 ACAACCAAATGAGGATGCAACC 59.700 45.455 4.51 4.51 35.05 3.77
3662 4365 3.665745 ACAACCAAATGAGGATGCAAC 57.334 42.857 0.00 0.00 35.05 4.17
3663 4366 3.803021 GCAACAACCAAATGAGGATGCAA 60.803 43.478 0.00 0.00 35.05 4.08
3664 4367 2.288948 GCAACAACCAAATGAGGATGCA 60.289 45.455 0.00 0.00 35.05 3.96
3665 4368 2.340337 GCAACAACCAAATGAGGATGC 58.660 47.619 0.00 0.00 35.05 3.91
3666 4369 2.598589 CGCAACAACCAAATGAGGATG 58.401 47.619 0.00 0.00 37.46 3.51
3667 4370 1.067635 GCGCAACAACCAAATGAGGAT 60.068 47.619 0.30 0.00 0.00 3.24
3668 4371 0.313672 GCGCAACAACCAAATGAGGA 59.686 50.000 0.30 0.00 0.00 3.71
3669 4372 1.003262 CGCGCAACAACCAAATGAGG 61.003 55.000 8.75 0.00 0.00 3.86
3670 4373 0.040514 TCGCGCAACAACCAAATGAG 60.041 50.000 8.75 0.00 0.00 2.90
3671 4374 0.595588 ATCGCGCAACAACCAAATGA 59.404 45.000 8.75 0.00 0.00 2.57
3672 4375 0.709467 CATCGCGCAACAACCAAATG 59.291 50.000 8.75 0.00 0.00 2.32
3673 4376 0.595588 TCATCGCGCAACAACCAAAT 59.404 45.000 8.75 0.00 0.00 2.32
3674 4377 0.317436 GTCATCGCGCAACAACCAAA 60.317 50.000 8.75 0.00 0.00 3.28
3675 4378 1.281353 GTCATCGCGCAACAACCAA 59.719 52.632 8.75 0.00 0.00 3.67
3676 4379 2.612567 GGTCATCGCGCAACAACCA 61.613 57.895 8.75 0.00 0.00 3.67
3677 4380 1.852067 AAGGTCATCGCGCAACAACC 61.852 55.000 8.75 9.62 0.00 3.77
3678 4381 0.040425 AAAGGTCATCGCGCAACAAC 60.040 50.000 8.75 0.00 0.00 3.32
3679 4382 0.040514 CAAAGGTCATCGCGCAACAA 60.041 50.000 8.75 0.00 0.00 2.83
3680 4383 0.882484 TCAAAGGTCATCGCGCAACA 60.882 50.000 8.75 0.00 0.00 3.33
3681 4384 0.179215 CTCAAAGGTCATCGCGCAAC 60.179 55.000 8.75 0.00 0.00 4.17
3682 4385 1.298157 CCTCAAAGGTCATCGCGCAA 61.298 55.000 8.75 0.00 0.00 4.85
3683 4386 1.741401 CCTCAAAGGTCATCGCGCA 60.741 57.895 8.75 0.00 0.00 6.09
3684 4387 3.093278 CCTCAAAGGTCATCGCGC 58.907 61.111 0.00 0.00 0.00 6.86
3685 4388 1.091771 ATGCCTCAAAGGTCATCGCG 61.092 55.000 0.00 0.00 37.80 5.87
3686 4389 0.379669 CATGCCTCAAAGGTCATCGC 59.620 55.000 0.00 0.00 37.80 4.58
3687 4390 1.019673 CCATGCCTCAAAGGTCATCG 58.980 55.000 0.00 0.00 37.80 3.84
3688 4391 2.134789 ACCATGCCTCAAAGGTCATC 57.865 50.000 0.00 0.00 37.80 2.92
3689 4392 2.173519 CAACCATGCCTCAAAGGTCAT 58.826 47.619 0.00 0.00 37.80 3.06
3690 4393 1.619654 CAACCATGCCTCAAAGGTCA 58.380 50.000 0.00 0.00 37.80 4.02
3702 4405 3.997021 AGAAAGTAGTCGAAGCAACCATG 59.003 43.478 0.00 0.00 0.00 3.66
3703 4406 4.246458 GAGAAAGTAGTCGAAGCAACCAT 58.754 43.478 0.00 0.00 0.00 3.55
3704 4407 3.554337 GGAGAAAGTAGTCGAAGCAACCA 60.554 47.826 0.00 0.00 0.00 3.67
3705 4408 2.994578 GGAGAAAGTAGTCGAAGCAACC 59.005 50.000 0.00 0.00 0.00 3.77
3706 4409 3.915536 AGGAGAAAGTAGTCGAAGCAAC 58.084 45.455 0.00 0.00 0.00 4.17
3707 4410 4.082354 GGTAGGAGAAAGTAGTCGAAGCAA 60.082 45.833 0.00 0.00 0.00 3.91
3708 4411 3.442977 GGTAGGAGAAAGTAGTCGAAGCA 59.557 47.826 0.00 0.00 0.00 3.91
3709 4412 3.695556 AGGTAGGAGAAAGTAGTCGAAGC 59.304 47.826 0.00 0.00 0.00 3.86
3710 4413 5.006552 CGTAGGTAGGAGAAAGTAGTCGAAG 59.993 48.000 0.00 0.00 0.00 3.79
3711 4414 4.872691 CGTAGGTAGGAGAAAGTAGTCGAA 59.127 45.833 0.00 0.00 0.00 3.71
3712 4415 4.160439 TCGTAGGTAGGAGAAAGTAGTCGA 59.840 45.833 0.00 0.00 0.00 4.20
3713 4416 4.269844 GTCGTAGGTAGGAGAAAGTAGTCG 59.730 50.000 0.00 0.00 0.00 4.18
3714 4417 4.269844 CGTCGTAGGTAGGAGAAAGTAGTC 59.730 50.000 0.00 0.00 0.00 2.59
3715 4418 4.081420 TCGTCGTAGGTAGGAGAAAGTAGT 60.081 45.833 0.00 0.00 0.00 2.73
3716 4419 4.269844 GTCGTCGTAGGTAGGAGAAAGTAG 59.730 50.000 0.00 0.00 0.00 2.57
3717 4420 4.184629 GTCGTCGTAGGTAGGAGAAAGTA 58.815 47.826 0.00 0.00 0.00 2.24
3718 4421 3.006247 GTCGTCGTAGGTAGGAGAAAGT 58.994 50.000 0.00 0.00 0.00 2.66
3719 4422 2.354199 GGTCGTCGTAGGTAGGAGAAAG 59.646 54.545 0.00 0.00 0.00 2.62
3720 4423 2.026822 AGGTCGTCGTAGGTAGGAGAAA 60.027 50.000 0.00 0.00 0.00 2.52
3721 4424 1.556911 AGGTCGTCGTAGGTAGGAGAA 59.443 52.381 0.00 0.00 0.00 2.87
3722 4425 1.198713 AGGTCGTCGTAGGTAGGAGA 58.801 55.000 0.00 0.00 0.00 3.71
3723 4426 2.869192 GTTAGGTCGTCGTAGGTAGGAG 59.131 54.545 0.00 0.00 0.00 3.69
3724 4427 2.420129 GGTTAGGTCGTCGTAGGTAGGA 60.420 54.545 0.00 0.00 0.00 2.94
3725 4428 1.943340 GGTTAGGTCGTCGTAGGTAGG 59.057 57.143 0.00 0.00 0.00 3.18
3726 4429 1.594862 CGGTTAGGTCGTCGTAGGTAG 59.405 57.143 0.00 0.00 0.00 3.18
3727 4430 1.206132 TCGGTTAGGTCGTCGTAGGTA 59.794 52.381 0.00 0.00 0.00 3.08
3728 4431 0.036388 TCGGTTAGGTCGTCGTAGGT 60.036 55.000 0.00 0.00 0.00 3.08
3729 4432 1.086696 TTCGGTTAGGTCGTCGTAGG 58.913 55.000 0.00 0.00 0.00 3.18
3730 4433 2.540361 CCATTCGGTTAGGTCGTCGTAG 60.540 54.545 0.00 0.00 0.00 3.51
3731 4434 1.401552 CCATTCGGTTAGGTCGTCGTA 59.598 52.381 0.00 0.00 0.00 3.43
3732 4435 0.171903 CCATTCGGTTAGGTCGTCGT 59.828 55.000 0.00 0.00 0.00 4.34
3733 4436 0.452987 TCCATTCGGTTAGGTCGTCG 59.547 55.000 0.00 0.00 0.00 5.12
3734 4437 2.884894 ATCCATTCGGTTAGGTCGTC 57.115 50.000 0.00 0.00 0.00 4.20
3735 4438 3.703052 AGTAATCCATTCGGTTAGGTCGT 59.297 43.478 0.00 0.00 0.00 4.34
3736 4439 4.317671 AGTAATCCATTCGGTTAGGTCG 57.682 45.455 0.00 0.00 0.00 4.79
3737 4440 7.713942 ACAATTAGTAATCCATTCGGTTAGGTC 59.286 37.037 0.00 0.00 0.00 3.85
3738 4441 7.571025 ACAATTAGTAATCCATTCGGTTAGGT 58.429 34.615 0.00 0.00 0.00 3.08
3739 4442 9.204570 CTACAATTAGTAATCCATTCGGTTAGG 57.795 37.037 0.00 0.00 30.92 2.69
3740 4443 8.709646 GCTACAATTAGTAATCCATTCGGTTAG 58.290 37.037 0.00 0.00 30.92 2.34
3741 4444 8.426489 AGCTACAATTAGTAATCCATTCGGTTA 58.574 33.333 0.00 0.00 30.92 2.85
3742 4445 7.280356 AGCTACAATTAGTAATCCATTCGGTT 58.720 34.615 0.00 0.00 30.92 4.44
3743 4446 6.827727 AGCTACAATTAGTAATCCATTCGGT 58.172 36.000 0.00 0.00 30.92 4.69
3744 4447 7.730364 AAGCTACAATTAGTAATCCATTCGG 57.270 36.000 0.00 0.00 30.92 4.30
3779 4482 9.261180 GCTTATGTACTGAGTATGCTTATGAAA 57.739 33.333 0.00 0.00 0.00 2.69
3780 4483 8.421002 TGCTTATGTACTGAGTATGCTTATGAA 58.579 33.333 0.00 0.00 0.00 2.57
3781 4484 7.951591 TGCTTATGTACTGAGTATGCTTATGA 58.048 34.615 0.00 0.00 0.00 2.15
3782 4485 7.330454 CCTGCTTATGTACTGAGTATGCTTATG 59.670 40.741 0.00 0.00 0.00 1.90
3783 4486 7.382110 CCTGCTTATGTACTGAGTATGCTTAT 58.618 38.462 0.00 0.00 0.00 1.73
3784 4487 6.738731 GCCTGCTTATGTACTGAGTATGCTTA 60.739 42.308 0.00 0.00 0.00 3.09
3785 4488 5.605534 CCTGCTTATGTACTGAGTATGCTT 58.394 41.667 0.00 0.00 0.00 3.91
3786 4489 4.502259 GCCTGCTTATGTACTGAGTATGCT 60.502 45.833 0.00 0.00 0.00 3.79
3787 4490 3.743396 GCCTGCTTATGTACTGAGTATGC 59.257 47.826 0.00 0.00 0.00 3.14
3788 4491 4.948847 TGCCTGCTTATGTACTGAGTATG 58.051 43.478 0.00 0.00 0.00 2.39
3789 4492 5.305386 TCATGCCTGCTTATGTACTGAGTAT 59.695 40.000 0.00 0.00 0.00 2.12
3790 4493 4.649218 TCATGCCTGCTTATGTACTGAGTA 59.351 41.667 0.00 0.00 0.00 2.59
3791 4494 3.452264 TCATGCCTGCTTATGTACTGAGT 59.548 43.478 0.00 0.00 0.00 3.41
3792 4495 4.063998 TCATGCCTGCTTATGTACTGAG 57.936 45.455 0.00 0.00 0.00 3.35
3793 4496 4.486125 TTCATGCCTGCTTATGTACTGA 57.514 40.909 0.00 0.00 0.00 3.41
3794 4497 6.877855 AGATATTCATGCCTGCTTATGTACTG 59.122 38.462 0.00 0.00 0.00 2.74
3795 4498 7.013823 AGATATTCATGCCTGCTTATGTACT 57.986 36.000 0.00 0.00 0.00 2.73
3796 4499 7.102346 AGAGATATTCATGCCTGCTTATGTAC 58.898 38.462 0.00 0.00 0.00 2.90
3797 4500 7.250032 AGAGATATTCATGCCTGCTTATGTA 57.750 36.000 0.00 0.00 0.00 2.29
3798 4501 6.124316 AGAGATATTCATGCCTGCTTATGT 57.876 37.500 0.00 0.00 0.00 2.29
3799 4502 6.653740 TGAAGAGATATTCATGCCTGCTTATG 59.346 38.462 0.00 0.00 34.31 1.90
3800 4503 6.776744 TGAAGAGATATTCATGCCTGCTTAT 58.223 36.000 0.00 0.00 34.31 1.73
3801 4504 6.178607 TGAAGAGATATTCATGCCTGCTTA 57.821 37.500 0.00 0.00 34.31 3.09
3802 4505 5.045012 TGAAGAGATATTCATGCCTGCTT 57.955 39.130 0.00 0.00 34.31 3.91
3803 4506 4.701651 TGAAGAGATATTCATGCCTGCT 57.298 40.909 0.00 0.00 34.31 4.24
3804 4507 5.961396 AATGAAGAGATATTCATGCCTGC 57.039 39.130 3.62 0.00 46.64 4.85
3805 4508 8.788325 TCATAATGAAGAGATATTCATGCCTG 57.212 34.615 3.62 3.11 46.64 4.85
3806 4509 8.047911 CCTCATAATGAAGAGATATTCATGCCT 58.952 37.037 3.62 0.00 46.64 4.75
3807 4510 7.282675 CCCTCATAATGAAGAGATATTCATGCC 59.717 40.741 3.62 0.00 46.64 4.40
3808 4511 7.828223 ACCCTCATAATGAAGAGATATTCATGC 59.172 37.037 3.62 0.00 46.64 4.06
3809 4512 9.736414 AACCCTCATAATGAAGAGATATTCATG 57.264 33.333 3.62 0.00 46.64 3.07
3817 4520 9.218525 AGAGAATAAACCCTCATAATGAAGAGA 57.781 33.333 0.00 0.00 33.74 3.10
3818 4521 9.844257 AAGAGAATAAACCCTCATAATGAAGAG 57.156 33.333 0.00 0.00 32.07 2.85
3819 4522 9.838339 GAAGAGAATAAACCCTCATAATGAAGA 57.162 33.333 0.00 0.00 32.07 2.87
3820 4523 9.618890 TGAAGAGAATAAACCCTCATAATGAAG 57.381 33.333 0.00 0.00 32.07 3.02
3821 4524 9.973661 TTGAAGAGAATAAACCCTCATAATGAA 57.026 29.630 0.00 0.00 32.07 2.57
3822 4525 9.396022 GTTGAAGAGAATAAACCCTCATAATGA 57.604 33.333 0.00 0.00 32.07 2.57
3823 4526 9.401058 AGTTGAAGAGAATAAACCCTCATAATG 57.599 33.333 0.00 0.00 32.07 1.90
3827 4530 9.981460 AAATAGTTGAAGAGAATAAACCCTCAT 57.019 29.630 0.00 0.00 32.07 2.90
3828 4531 9.807921 AAAATAGTTGAAGAGAATAAACCCTCA 57.192 29.630 0.00 0.00 32.07 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.