Multiple sequence alignment - TraesCS2B01G104900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G104900 chr2B 100.000 2786 0 0 1 2786 65237722 65234937 0.000000e+00 5145
1 TraesCS2B01G104900 chr2B 91.284 631 46 7 1 624 141994482 141995110 0.000000e+00 852
2 TraesCS2B01G104900 chr2D 93.483 1519 59 10 628 2140 37523269 37521785 0.000000e+00 2220
3 TraesCS2B01G104900 chr2D 85.875 1154 100 27 833 1957 37393454 37394573 0.000000e+00 1170
4 TraesCS2B01G104900 chr2D 94.366 639 16 7 2150 2786 37521675 37521055 0.000000e+00 963
5 TraesCS2B01G104900 chr2D 88.889 630 55 13 1 620 567682867 567683491 0.000000e+00 761
6 TraesCS2B01G104900 chr2D 89.070 613 62 5 1 610 454849553 454848943 0.000000e+00 756
7 TraesCS2B01G104900 chr2D 85.317 504 63 8 722 1221 37354059 37354555 6.880000e-141 510
8 TraesCS2B01G104900 chr1B 91.410 617 47 6 1 613 8554617 8554003 0.000000e+00 841
9 TraesCS2B01G104900 chr5B 90.717 614 50 7 2 610 562448432 562447821 0.000000e+00 811
10 TraesCS2B01G104900 chr5B 89.268 615 58 7 1 610 543302723 543303334 0.000000e+00 763
11 TraesCS2B01G104900 chr6D 90.492 610 49 7 2 606 433034539 433035144 0.000000e+00 797
12 TraesCS2B01G104900 chr7D 89.233 613 62 4 1 610 227564098 227563487 0.000000e+00 763
13 TraesCS2B01G104900 chr5D 89.233 613 61 5 1 610 469181596 469180986 0.000000e+00 761
14 TraesCS2B01G104900 chr3D 78.537 205 29 13 2200 2395 151602771 151602969 1.360000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G104900 chr2B 65234937 65237722 2785 True 5145.0 5145 100.0000 1 2786 1 chr2B.!!$R1 2785
1 TraesCS2B01G104900 chr2B 141994482 141995110 628 False 852.0 852 91.2840 1 624 1 chr2B.!!$F1 623
2 TraesCS2B01G104900 chr2D 37521055 37523269 2214 True 1591.5 2220 93.9245 628 2786 2 chr2D.!!$R2 2158
3 TraesCS2B01G104900 chr2D 37393454 37394573 1119 False 1170.0 1170 85.8750 833 1957 1 chr2D.!!$F2 1124
4 TraesCS2B01G104900 chr2D 567682867 567683491 624 False 761.0 761 88.8890 1 620 1 chr2D.!!$F3 619
5 TraesCS2B01G104900 chr2D 454848943 454849553 610 True 756.0 756 89.0700 1 610 1 chr2D.!!$R1 609
6 TraesCS2B01G104900 chr1B 8554003 8554617 614 True 841.0 841 91.4100 1 613 1 chr1B.!!$R1 612
7 TraesCS2B01G104900 chr5B 562447821 562448432 611 True 811.0 811 90.7170 2 610 1 chr5B.!!$R1 608
8 TraesCS2B01G104900 chr5B 543302723 543303334 611 False 763.0 763 89.2680 1 610 1 chr5B.!!$F1 609
9 TraesCS2B01G104900 chr6D 433034539 433035144 605 False 797.0 797 90.4920 2 606 1 chr6D.!!$F1 604
10 TraesCS2B01G104900 chr7D 227563487 227564098 611 True 763.0 763 89.2330 1 610 1 chr7D.!!$R1 609
11 TraesCS2B01G104900 chr5D 469180986 469181596 610 True 761.0 761 89.2330 1 610 1 chr5D.!!$R1 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
968 980 0.574454 GACATCGACGAGCTGAATGC 59.426 55.0 3.01 0.0 43.29 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2300 2455 0.036577 ACTAGCAGCACTGGCAAGAG 60.037 55.0 0.0 0.0 44.61 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.743183 GCGTGTAGGAAGATGGATGCTT 60.743 50.000 0.00 0.00 0.00 3.91
40 41 8.257306 GGAAGATGGATGCTTATTTTGGTTTTA 58.743 33.333 0.00 0.00 0.00 1.52
56 57 4.879545 TGGTTTTAGGAAGGCGAATACATC 59.120 41.667 0.00 0.00 0.00 3.06
266 269 2.637382 TCAACAGTGGGAGCAGTTATGA 59.363 45.455 0.00 0.00 0.00 2.15
430 436 2.785540 ATTTAGGTTTTACGGGCCGA 57.214 45.000 35.78 13.93 0.00 5.54
433 439 0.614415 TAGGTTTTACGGGCCGAGGA 60.614 55.000 35.78 14.72 0.00 3.71
434 440 1.003476 GGTTTTACGGGCCGAGGAA 60.003 57.895 35.78 20.00 0.00 3.36
478 484 0.683412 AAGCCGACCCGTAAAAGAGT 59.317 50.000 0.00 0.00 0.00 3.24
502 508 4.691860 ATTCGTGGAAGATGCTCTTTTG 57.308 40.909 0.86 0.00 36.73 2.44
516 522 2.070654 CTTTTGCGGGTCGGCTTTGT 62.071 55.000 2.43 0.00 0.00 2.83
530 536 0.984230 CTTTGTGGGGTCTGCCTCTA 59.016 55.000 0.00 0.00 35.83 2.43
611 618 2.279517 GCGTGATGCGGGGTCTAG 60.280 66.667 0.00 0.00 41.69 2.43
612 619 2.279517 CGTGATGCGGGGTCTAGC 60.280 66.667 0.00 0.00 36.85 3.42
624 635 2.170607 GGGGTCTAGCATGCTCTAACAA 59.829 50.000 26.57 4.13 0.00 2.83
625 636 3.181450 GGGGTCTAGCATGCTCTAACAAT 60.181 47.826 26.57 0.00 0.00 2.71
626 637 4.061596 GGGTCTAGCATGCTCTAACAATC 58.938 47.826 26.57 10.16 0.00 2.67
632 643 2.880890 GCATGCTCTAACAATCCCGATT 59.119 45.455 11.37 0.00 0.00 3.34
643 654 1.194781 ATCCCGATTCCGATCCCCAG 61.195 60.000 0.00 0.00 38.22 4.45
650 661 1.559065 TTCCGATCCCCAGTCCAACC 61.559 60.000 0.00 0.00 0.00 3.77
717 728 1.604023 CTCCCCGATCTAGTCCCCG 60.604 68.421 0.00 0.00 0.00 5.73
726 737 5.653769 CCCGATCTAGTCCCCGTATTATTTA 59.346 44.000 0.00 0.00 0.00 1.40
727 738 6.153340 CCCGATCTAGTCCCCGTATTATTTAA 59.847 42.308 0.00 0.00 0.00 1.52
728 739 7.256286 CCGATCTAGTCCCCGTATTATTTAAG 58.744 42.308 0.00 0.00 0.00 1.85
805 816 3.735820 CGCCACCGTAGCTCACTAATTAA 60.736 47.826 0.00 0.00 0.00 1.40
807 818 3.795101 CCACCGTAGCTCACTAATTAACG 59.205 47.826 0.00 0.00 0.00 3.18
808 819 3.242248 CACCGTAGCTCACTAATTAACGC 59.758 47.826 0.00 0.00 0.00 4.84
809 820 2.466571 CCGTAGCTCACTAATTAACGCG 59.533 50.000 3.53 3.53 0.00 6.01
810 821 3.357021 CGTAGCTCACTAATTAACGCGA 58.643 45.455 15.93 0.00 0.00 5.87
811 822 3.417969 CGTAGCTCACTAATTAACGCGAG 59.582 47.826 15.93 0.00 0.00 5.03
812 823 3.777465 AGCTCACTAATTAACGCGAGA 57.223 42.857 15.93 0.00 0.00 4.04
813 824 4.308899 AGCTCACTAATTAACGCGAGAT 57.691 40.909 15.93 0.13 0.00 2.75
814 825 4.683832 AGCTCACTAATTAACGCGAGATT 58.316 39.130 15.93 12.09 0.00 2.40
815 826 5.109903 AGCTCACTAATTAACGCGAGATTT 58.890 37.500 15.93 0.00 0.00 2.17
816 827 5.581085 AGCTCACTAATTAACGCGAGATTTT 59.419 36.000 15.93 0.00 0.00 1.82
817 828 6.755141 AGCTCACTAATTAACGCGAGATTTTA 59.245 34.615 15.93 0.00 0.00 1.52
818 829 7.043325 AGCTCACTAATTAACGCGAGATTTTAG 60.043 37.037 15.93 14.78 0.00 1.85
819 830 7.254017 GCTCACTAATTAACGCGAGATTTTAGT 60.254 37.037 15.93 15.40 31.61 2.24
820 831 9.229784 CTCACTAATTAACGCGAGATTTTAGTA 57.770 33.333 15.93 7.57 30.94 1.82
821 832 9.229784 TCACTAATTAACGCGAGATTTTAGTAG 57.770 33.333 15.93 6.13 30.94 2.57
966 978 0.867753 GCGACATCGACGAGCTGAAT 60.868 55.000 5.26 0.00 43.02 2.57
967 979 0.842613 CGACATCGACGAGCTGAATG 59.157 55.000 3.01 0.00 43.02 2.67
968 980 0.574454 GACATCGACGAGCTGAATGC 59.426 55.000 3.01 0.00 43.29 3.56
1075 1090 1.078848 GGTGGCAAGATCGAGCTGT 60.079 57.895 2.80 0.00 0.00 4.40
1152 1167 2.644992 CCCACCGCTTCAAACTGC 59.355 61.111 0.00 0.00 0.00 4.40
1208 1223 1.182667 TGGTACTGTCACATCGGAGG 58.817 55.000 0.00 0.00 0.00 4.30
1221 1236 2.202987 GGAGGCGATCAGTGGCAG 60.203 66.667 0.00 0.00 0.00 4.85
1224 1239 0.809241 GAGGCGATCAGTGGCAGAAG 60.809 60.000 0.00 0.00 0.00 2.85
1365 1380 1.546029 GGTGTTCTTGATTTCTGCCCC 59.454 52.381 0.00 0.00 0.00 5.80
1372 1387 3.338250 ATTTCTGCCCCGCTCCCA 61.338 61.111 0.00 0.00 0.00 4.37
1374 1389 2.916527 ATTTCTGCCCCGCTCCCATG 62.917 60.000 0.00 0.00 0.00 3.66
1503 1527 3.428862 CCCTGTTATGGGCGAAAACAATC 60.429 47.826 0.00 0.00 40.84 2.67
1517 1541 5.644644 GAAAACAATCTATGGTGCAAGAGG 58.355 41.667 0.00 0.00 0.00 3.69
1536 1560 6.581388 AGAGGTCATAGGATGGATTTTTCA 57.419 37.500 0.00 0.00 0.00 2.69
1537 1561 6.599445 AGAGGTCATAGGATGGATTTTTCAG 58.401 40.000 0.00 0.00 0.00 3.02
1587 1612 1.404391 GGTGATCGAGCGTTCCTCTTA 59.596 52.381 0.00 0.00 38.49 2.10
1614 1639 1.709578 TCAACTCTGGTGCTCTCTGT 58.290 50.000 0.00 0.00 0.00 3.41
1617 1642 0.972883 ACTCTGGTGCTCTCTGTTCC 59.027 55.000 0.00 0.00 0.00 3.62
1659 1684 2.158842 AGAGAACTGCATCTACATGGCC 60.159 50.000 0.00 0.00 0.00 5.36
1664 1689 3.246301 ACTGCATCTACATGGCCTATCT 58.754 45.455 3.32 0.00 0.00 1.98
2068 2119 7.936950 AAAACTCTACCGTAGTTACTGAAAC 57.063 36.000 5.46 0.00 36.17 2.78
2104 2159 7.066284 GTCTAATAATGCCTTCATGACTTGTGT 59.934 37.037 0.00 0.00 32.23 3.72
2105 2160 3.928727 AATGCCTTCATGACTTGTGTG 57.071 42.857 0.00 0.00 32.23 3.82
2229 2384 8.488651 AACCTGAGTAAATTTACGAGTAATGG 57.511 34.615 19.92 17.07 38.65 3.16
2247 2402 1.221414 GGATACAATCAGCGAGCCAC 58.779 55.000 0.00 0.00 0.00 5.01
2248 2403 1.473257 GGATACAATCAGCGAGCCACA 60.473 52.381 0.00 0.00 0.00 4.17
2249 2404 1.863454 GATACAATCAGCGAGCCACAG 59.137 52.381 0.00 0.00 0.00 3.66
2250 2405 0.740868 TACAATCAGCGAGCCACAGC 60.741 55.000 0.00 0.00 40.32 4.40
2274 2429 2.744202 ACGAACTTCATCAGGCACATTC 59.256 45.455 0.00 0.00 0.00 2.67
2278 2433 2.093500 ACTTCATCAGGCACATTCGCTA 60.093 45.455 0.00 0.00 0.00 4.26
2294 2449 1.473434 CGCTATCAGTTCCTGGTTCCC 60.473 57.143 0.00 0.00 31.51 3.97
2300 2455 1.341209 CAGTTCCTGGTTCCCTTTTGC 59.659 52.381 0.00 0.00 0.00 3.68
2325 2480 0.538584 CCAGTGCTGCTAGTCCATGA 59.461 55.000 0.00 0.00 0.00 3.07
2328 2483 0.177604 GTGCTGCTAGTCCATGAGCT 59.822 55.000 0.00 0.00 39.54 4.09
2379 2535 1.691195 TTGGACGGAGCTGAACACCA 61.691 55.000 0.00 0.00 0.00 4.17
2550 2706 1.415659 CTCTGGCTCGAGGAAATCCAT 59.584 52.381 15.58 0.00 38.89 3.41
2551 2707 1.414181 TCTGGCTCGAGGAAATCCATC 59.586 52.381 15.58 0.00 38.89 3.51
2552 2708 1.415659 CTGGCTCGAGGAAATCCATCT 59.584 52.381 15.58 0.00 38.89 2.90
2553 2709 1.414181 TGGCTCGAGGAAATCCATCTC 59.586 52.381 15.58 0.00 38.89 2.75
2635 2791 6.657541 AGTCTAGTCCTCTAGTGAAAACAGAG 59.342 42.308 0.00 0.00 42.88 3.35
2637 2793 3.057174 AGTCCTCTAGTGAAAACAGAGCG 60.057 47.826 0.00 0.00 35.50 5.03
2743 2900 6.094881 GTGATTACAGAGAGAGTAGCAGAAGT 59.905 42.308 0.00 0.00 0.00 3.01
2781 2938 0.471617 CCTTGGGCCGAGAATCTGAT 59.528 55.000 22.99 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.844097 ATTCGCCTTCCTAAAACCAAAATA 57.156 33.333 0.00 0.00 0.00 1.40
87 88 4.865913 TTGTACTAAGGAGTGCACGAGCA 61.866 47.826 12.01 2.49 46.49 4.26
89 90 3.570926 TTGTACTAAGGAGTGCACGAG 57.429 47.619 12.01 7.61 46.49 4.18
393 398 8.776376 ACCTAAATTTGCACCTCAATTTAATG 57.224 30.769 12.67 10.11 34.12 1.90
516 522 2.363795 CCGTAGAGGCAGACCCCA 60.364 66.667 0.00 0.00 36.11 4.96
610 617 1.486310 TCGGGATTGTTAGAGCATGCT 59.514 47.619 22.92 22.92 0.00 3.79
611 618 1.953559 TCGGGATTGTTAGAGCATGC 58.046 50.000 10.51 10.51 0.00 4.06
612 619 3.499918 GGAATCGGGATTGTTAGAGCATG 59.500 47.826 0.00 0.00 0.00 4.06
624 635 1.152118 TGGGGATCGGAATCGGGAT 60.152 57.895 0.00 0.00 36.95 3.85
625 636 1.837051 CTGGGGATCGGAATCGGGA 60.837 63.158 0.00 0.00 36.95 5.14
626 637 2.100879 GACTGGGGATCGGAATCGGG 62.101 65.000 0.00 0.00 36.95 5.14
632 643 1.993391 GGTTGGACTGGGGATCGGA 60.993 63.158 0.00 0.00 0.00 4.55
643 654 3.909651 TTGGGGCTGGGGTTGGAC 61.910 66.667 0.00 0.00 0.00 4.02
717 728 8.215132 CACGATCCGCTTCTTCTTAAATAATAC 58.785 37.037 0.00 0.00 0.00 1.89
726 737 0.741221 GCCACGATCCGCTTCTTCTT 60.741 55.000 0.00 0.00 0.00 2.52
727 738 1.153549 GCCACGATCCGCTTCTTCT 60.154 57.895 0.00 0.00 0.00 2.85
728 739 1.424493 CTGCCACGATCCGCTTCTTC 61.424 60.000 0.00 0.00 0.00 2.87
805 816 4.338682 ACAGATCCTACTAAAATCTCGCGT 59.661 41.667 5.77 0.00 0.00 6.01
807 818 8.512956 TGTATACAGATCCTACTAAAATCTCGC 58.487 37.037 0.08 0.00 0.00 5.03
808 819 9.828852 GTGTATACAGATCCTACTAAAATCTCG 57.171 37.037 5.62 0.00 0.00 4.04
864 875 3.753434 CGAGGCACGGCAGAGACT 61.753 66.667 0.00 0.00 38.46 3.24
925 936 1.565305 CGATTGGCTTCTTCTCCGAG 58.435 55.000 0.00 0.00 0.00 4.63
966 978 1.918467 CTGGGCAGATCTCCTTGGCA 61.918 60.000 8.25 0.00 0.00 4.92
967 979 1.153005 CTGGGCAGATCTCCTTGGC 60.153 63.158 0.00 0.00 0.00 4.52
968 980 1.153005 GCTGGGCAGATCTCCTTGG 60.153 63.158 0.00 0.00 0.00 3.61
1059 1074 1.153765 CGACAGCTCGATCTTGCCA 60.154 57.895 3.65 0.00 43.06 4.92
1060 1075 2.520904 GCGACAGCTCGATCTTGCC 61.521 63.158 0.00 0.00 43.06 4.52
1061 1076 2.520904 GGCGACAGCTCGATCTTGC 61.521 63.158 0.00 0.00 43.06 4.01
1102 1117 2.756829 CAGGCAGATGCAGTCTATGAG 58.243 52.381 7.19 0.00 44.36 2.90
1152 1167 1.797933 CTCGACCAGAAGCACGACG 60.798 63.158 0.00 0.00 0.00 5.12
1208 1223 1.742880 TGCTTCTGCCACTGATCGC 60.743 57.895 0.00 0.00 38.71 4.58
1221 1236 1.181001 CGATGTCGTAGTCGTGCTTC 58.819 55.000 0.00 0.00 38.33 3.86
1224 1239 0.179181 TTCCGATGTCGTAGTCGTGC 60.179 55.000 1.44 0.00 36.17 5.34
1365 1380 0.321564 TGGAACTGAACATGGGAGCG 60.322 55.000 0.00 0.00 0.00 5.03
1372 1387 5.122869 CGTTGATCTTGATGGAACTGAACAT 59.877 40.000 0.00 0.00 0.00 2.71
1374 1389 4.690748 TCGTTGATCTTGATGGAACTGAAC 59.309 41.667 0.00 0.00 0.00 3.18
1407 1422 4.042398 CCAGTTCAACACCGTAGATATCG 58.958 47.826 0.00 0.00 0.00 2.92
1503 1527 3.643320 TCCTATGACCTCTTGCACCATAG 59.357 47.826 0.00 0.00 37.49 2.23
1517 1541 5.824624 TGCTCTGAAAAATCCATCCTATGAC 59.175 40.000 0.00 0.00 0.00 3.06
1536 1560 3.582208 ACACTTTTCTCCATCTCTGCTCT 59.418 43.478 0.00 0.00 0.00 4.09
1537 1561 3.936564 ACACTTTTCTCCATCTCTGCTC 58.063 45.455 0.00 0.00 0.00 4.26
1587 1612 1.271597 GCACCAGAGTTGAACAGGGAT 60.272 52.381 0.00 0.00 0.00 3.85
1614 1639 2.204461 TCCAGACTTGCCGACGGAA 61.204 57.895 20.50 3.25 0.00 4.30
1617 1642 1.734477 CAGTCCAGACTTGCCGACG 60.734 63.158 0.00 0.00 40.20 5.12
1659 1684 3.539604 CAAGGTCTGCTCCCAAAGATAG 58.460 50.000 0.00 0.00 0.00 2.08
1830 1861 2.158623 AGGTTGCACAATCCAAGTCTGA 60.159 45.455 0.00 0.00 0.00 3.27
1899 1950 7.265673 TCACTAGGAAGAAATAGATGGAAACG 58.734 38.462 0.00 0.00 0.00 3.60
2147 2202 6.497954 TCAGGGTGATTTTTGGATCAATTCTT 59.502 34.615 0.00 0.00 37.75 2.52
2148 2203 6.018469 TCAGGGTGATTTTTGGATCAATTCT 58.982 36.000 0.00 0.00 37.75 2.40
2229 2384 1.863454 CTGTGGCTCGCTGATTGTATC 59.137 52.381 0.00 0.00 0.00 2.24
2244 2399 1.728971 GATGAAGTTCGTGAGCTGTGG 59.271 52.381 1.31 0.00 0.00 4.17
2247 2402 1.998315 CCTGATGAAGTTCGTGAGCTG 59.002 52.381 1.31 0.00 0.00 4.24
2248 2403 1.674221 GCCTGATGAAGTTCGTGAGCT 60.674 52.381 1.31 0.00 0.00 4.09
2249 2404 0.723981 GCCTGATGAAGTTCGTGAGC 59.276 55.000 1.31 0.00 0.00 4.26
2250 2405 1.728971 GTGCCTGATGAAGTTCGTGAG 59.271 52.381 1.31 3.22 0.00 3.51
2251 2406 1.069978 TGTGCCTGATGAAGTTCGTGA 59.930 47.619 1.31 0.00 0.00 4.35
2252 2407 1.511850 TGTGCCTGATGAAGTTCGTG 58.488 50.000 1.31 0.00 0.00 4.35
2253 2408 2.479566 ATGTGCCTGATGAAGTTCGT 57.520 45.000 0.00 0.00 0.00 3.85
2254 2409 2.222886 CGAATGTGCCTGATGAAGTTCG 60.223 50.000 0.00 0.00 0.00 3.95
2255 2410 2.476854 GCGAATGTGCCTGATGAAGTTC 60.477 50.000 0.00 0.00 0.00 3.01
2256 2411 1.470098 GCGAATGTGCCTGATGAAGTT 59.530 47.619 0.00 0.00 0.00 2.66
2257 2412 1.089920 GCGAATGTGCCTGATGAAGT 58.910 50.000 0.00 0.00 0.00 3.01
2258 2413 1.376543 AGCGAATGTGCCTGATGAAG 58.623 50.000 0.00 0.00 34.65 3.02
2259 2414 2.689553 TAGCGAATGTGCCTGATGAA 57.310 45.000 0.00 0.00 34.65 2.57
2294 2449 0.672342 AGCACTGGCAAGAGCAAAAG 59.328 50.000 13.35 0.00 41.95 2.27
2300 2455 0.036577 ACTAGCAGCACTGGCAAGAG 60.037 55.000 0.00 0.00 44.61 2.85
2355 2510 1.734465 GTTCAGCTCCGTCCAATCTTG 59.266 52.381 0.00 0.00 0.00 3.02
2379 2535 2.026449 AGGACATAAAAGCTCTGCTGCT 60.026 45.455 0.00 0.00 46.40 4.24
2542 2698 3.265791 AGCACAAGACGAGATGGATTTC 58.734 45.455 0.00 0.00 0.00 2.17
2550 2706 6.034591 GCTTAATAAGTAGCACAAGACGAGA 58.965 40.000 1.68 0.00 37.35 4.04
2551 2707 6.020281 CAGCTTAATAAGTAGCACAAGACGAG 60.020 42.308 1.68 0.00 39.85 4.18
2552 2708 5.805486 CAGCTTAATAAGTAGCACAAGACGA 59.195 40.000 1.68 0.00 39.85 4.20
2553 2709 5.805486 TCAGCTTAATAAGTAGCACAAGACG 59.195 40.000 1.68 0.00 39.85 4.18
2554 2710 7.596749 TTCAGCTTAATAAGTAGCACAAGAC 57.403 36.000 1.68 0.00 39.85 3.01
2649 2805 0.392863 TGGTCTGGATGCACCGATTG 60.393 55.000 0.00 0.00 42.61 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.