Multiple sequence alignment - TraesCS2B01G104800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G104800 chr2B 100.000 5018 0 0 1 5018 65226272 65231289 0.000000e+00 9267.0
1 TraesCS2B01G104800 chr2B 78.748 767 130 18 4252 4998 16187566 16188319 2.720000e-132 483.0
2 TraesCS2B01G104800 chr2D 86.908 2704 191 66 189 2816 37464730 37467346 0.000000e+00 2881.0
3 TraesCS2B01G104800 chr2D 92.164 536 28 5 3827 4356 37468766 37469293 0.000000e+00 745.0
4 TraesCS2B01G104800 chr2D 86.306 555 59 13 2834 3377 37467419 37467967 5.600000e-164 588.0
5 TraesCS2B01G104800 chr2D 88.964 444 34 8 4582 5011 37470520 37470962 7.390000e-148 534.0
6 TraesCS2B01G104800 chr2D 87.451 255 15 7 3431 3683 37468141 37468380 1.380000e-70 278.0
7 TraesCS2B01G104800 chr2D 87.970 133 10 3 3683 3809 37468414 37468546 8.700000e-33 152.0
8 TraesCS2B01G104800 chr2D 94.505 91 3 1 4252 4342 480757052 480756964 6.770000e-29 139.0
9 TraesCS2B01G104800 chr2D 80.749 187 27 3 1 186 37464514 37464692 2.440000e-28 137.0
10 TraesCS2B01G104800 chr2D 89.423 104 11 0 4252 4355 617509969 617510072 1.130000e-26 132.0
11 TraesCS2B01G104800 chr2D 87.255 102 6 3 4350 4451 480756929 480756835 5.310000e-20 110.0
12 TraesCS2B01G104800 chr2A 84.990 2898 280 65 1 2816 42318039 42320863 0.000000e+00 2798.0
13 TraesCS2B01G104800 chr2A 93.045 532 26 5 3827 4355 42322471 42322994 0.000000e+00 767.0
14 TraesCS2B01G104800 chr2A 92.766 235 17 0 2834 3068 42320934 42321168 1.730000e-89 340.0
15 TraesCS2B01G104800 chr2A 83.849 291 37 8 3092 3377 42321243 42321528 8.280000e-68 268.0
16 TraesCS2B01G104800 chr2A 82.154 325 19 17 3510 3809 42321941 42322251 5.020000e-60 243.0
17 TraesCS2B01G104800 chr7B 85.038 782 76 19 4252 5002 561275490 561276261 0.000000e+00 758.0
18 TraesCS2B01G104800 chr7B 81.046 612 91 9 4351 4947 615324646 615324045 9.840000e-127 464.0
19 TraesCS2B01G104800 chr7B 89.423 104 11 0 4252 4355 519799079 519799182 1.130000e-26 132.0
20 TraesCS2B01G104800 chr1D 84.537 789 73 17 4252 5002 228824940 228825717 0.000000e+00 736.0
21 TraesCS2B01G104800 chr1D 85.079 630 67 9 4350 4965 437274099 437274715 7.140000e-173 617.0
22 TraesCS2B01G104800 chr6D 83.730 799 84 14 4257 5018 63120950 63120161 0.000000e+00 713.0
23 TraesCS2B01G104800 chr6D 83.554 681 83 9 4353 5018 292971027 292971693 1.190000e-170 610.0
24 TraesCS2B01G104800 chr7D 82.814 803 92 16 4253 5018 513204659 513205452 0.000000e+00 676.0
25 TraesCS2B01G104800 chr7D 84.435 681 80 12 4352 5018 15502016 15501348 0.000000e+00 647.0
26 TraesCS2B01G104800 chr7D 87.273 55 6 1 560 613 489156092 489156038 1.510000e-05 62.1
27 TraesCS2B01G104800 chr1B 84.919 683 74 14 4353 5018 592854544 592855214 0.000000e+00 664.0
28 TraesCS2B01G104800 chr5D 84.480 683 83 10 4350 5018 29877507 29876834 0.000000e+00 652.0
29 TraesCS2B01G104800 chr5D 82.236 805 90 21 4252 5018 84314906 84314117 0.000000e+00 645.0
30 TraesCS2B01G104800 chr5D 83.582 67 8 3 549 613 554758105 554758040 5.430000e-05 60.2
31 TraesCS2B01G104800 chr5B 82.258 806 96 21 4249 5018 26452615 26453409 0.000000e+00 652.0
32 TraesCS2B01G104800 chr5B 81.073 317 43 10 1248 1554 263521735 263521426 2.340000e-58 237.0
33 TraesCS2B01G104800 chr4A 82.870 683 91 15 4351 5018 631493913 631493242 1.560000e-164 590.0
34 TraesCS2B01G104800 chr4A 92.708 96 6 1 4258 4352 742967651 742967556 2.440000e-28 137.0
35 TraesCS2B01G104800 chr1A 84.058 345 34 6 4350 4681 517086293 517085957 3.770000e-81 313.0
36 TraesCS2B01G104800 chr5A 81.699 306 36 13 1259 1554 313879972 313879677 2.340000e-58 237.0
37 TraesCS2B01G104800 chr3B 80.292 274 46 2 4351 4624 758545569 758545834 3.060000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G104800 chr2B 65226272 65231289 5017 False 9267.000000 9267 100.0000 1 5018 1 chr2B.!!$F2 5017
1 TraesCS2B01G104800 chr2B 16187566 16188319 753 False 483.000000 483 78.7480 4252 4998 1 chr2B.!!$F1 746
2 TraesCS2B01G104800 chr2D 37464514 37470962 6448 False 759.285714 2881 87.2160 1 5011 7 chr2D.!!$F2 5010
3 TraesCS2B01G104800 chr2A 42318039 42322994 4955 False 883.200000 2798 87.3608 1 4355 5 chr2A.!!$F1 4354
4 TraesCS2B01G104800 chr7B 561275490 561276261 771 False 758.000000 758 85.0380 4252 5002 1 chr7B.!!$F2 750
5 TraesCS2B01G104800 chr7B 615324045 615324646 601 True 464.000000 464 81.0460 4351 4947 1 chr7B.!!$R1 596
6 TraesCS2B01G104800 chr1D 228824940 228825717 777 False 736.000000 736 84.5370 4252 5002 1 chr1D.!!$F1 750
7 TraesCS2B01G104800 chr1D 437274099 437274715 616 False 617.000000 617 85.0790 4350 4965 1 chr1D.!!$F2 615
8 TraesCS2B01G104800 chr6D 63120161 63120950 789 True 713.000000 713 83.7300 4257 5018 1 chr6D.!!$R1 761
9 TraesCS2B01G104800 chr6D 292971027 292971693 666 False 610.000000 610 83.5540 4353 5018 1 chr6D.!!$F1 665
10 TraesCS2B01G104800 chr7D 513204659 513205452 793 False 676.000000 676 82.8140 4253 5018 1 chr7D.!!$F1 765
11 TraesCS2B01G104800 chr7D 15501348 15502016 668 True 647.000000 647 84.4350 4352 5018 1 chr7D.!!$R1 666
12 TraesCS2B01G104800 chr1B 592854544 592855214 670 False 664.000000 664 84.9190 4353 5018 1 chr1B.!!$F1 665
13 TraesCS2B01G104800 chr5D 29876834 29877507 673 True 652.000000 652 84.4800 4350 5018 1 chr5D.!!$R1 668
14 TraesCS2B01G104800 chr5D 84314117 84314906 789 True 645.000000 645 82.2360 4252 5018 1 chr5D.!!$R2 766
15 TraesCS2B01G104800 chr5B 26452615 26453409 794 False 652.000000 652 82.2580 4249 5018 1 chr5B.!!$F1 769
16 TraesCS2B01G104800 chr4A 631493242 631493913 671 True 590.000000 590 82.8700 4351 5018 1 chr4A.!!$R1 667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
638 696 0.378962 TATTGGCGCAATTGTACCGC 59.621 50.0 17.29 17.29 46.34 5.68 F
1878 2022 0.037303 AGGGTGTGGCAGATTCTGTG 59.963 55.0 14.90 0.00 33.43 3.66 F
2004 2148 0.179032 TGCTTCGTCCTGCAAAGGAA 60.179 50.0 0.00 0.55 40.06 3.36 F
3339 3599 0.692476 TGATGAACTCTGTGGTGGGG 59.308 55.0 0.00 0.00 0.00 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2127 0.169672 CCTTTGCAGGACGAAGCATG 59.830 55.0 0.00 0.0 44.19 4.06 R
2918 3124 0.605319 TCGTTCGCTTTTCCCTGCAT 60.605 50.0 0.00 0.0 0.00 3.96 R
3350 3610 0.762418 TCCTTTGGACACGTGGACAT 59.238 50.0 21.57 0.0 0.00 3.06 R
4376 5912 0.239347 GTTCGTGCTGCAGCTTCAAT 59.761 50.0 36.61 0.0 42.66 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 1.610522 CCAGCTTTGGGAAGACTTGTG 59.389 52.381 0.00 0.00 34.71 3.33
54 55 2.575532 CAGCTTTGGGAAGACTTGTGA 58.424 47.619 0.00 0.00 34.71 3.58
55 56 2.951642 CAGCTTTGGGAAGACTTGTGAA 59.048 45.455 0.00 0.00 34.71 3.18
57 58 3.571401 AGCTTTGGGAAGACTTGTGAATG 59.429 43.478 0.00 0.00 34.71 2.67
58 59 3.569701 GCTTTGGGAAGACTTGTGAATGA 59.430 43.478 0.00 0.00 34.71 2.57
59 60 4.037923 GCTTTGGGAAGACTTGTGAATGAA 59.962 41.667 0.00 0.00 34.71 2.57
60 61 5.514274 TTTGGGAAGACTTGTGAATGAAC 57.486 39.130 0.00 0.00 0.00 3.18
61 62 4.437682 TGGGAAGACTTGTGAATGAACT 57.562 40.909 0.00 0.00 0.00 3.01
62 63 4.792068 TGGGAAGACTTGTGAATGAACTT 58.208 39.130 0.00 0.00 0.00 2.66
63 64 5.200483 TGGGAAGACTTGTGAATGAACTTT 58.800 37.500 0.00 0.00 0.00 2.66
64 65 5.299279 TGGGAAGACTTGTGAATGAACTTTC 59.701 40.000 0.00 0.00 0.00 2.62
144 145 1.423541 TGCCCTTTGCTCCTTAGTGAA 59.576 47.619 0.00 0.00 42.00 3.18
156 158 5.163457 GCTCCTTAGTGAAGTCATCTAGCTT 60.163 44.000 0.00 0.00 0.00 3.74
162 164 2.159184 TGAAGTCATCTAGCTTCGCCAG 60.159 50.000 0.00 0.00 42.77 4.85
180 182 2.868583 CCAGCGATGATTCAAGAACGAT 59.131 45.455 0.06 0.00 0.00 3.73
186 188 5.050091 GCGATGATTCAAGAACGATGGTTAT 60.050 40.000 0.00 0.00 36.24 1.89
187 189 6.145534 GCGATGATTCAAGAACGATGGTTATA 59.854 38.462 0.00 0.00 36.24 0.98
188 190 7.620188 GCGATGATTCAAGAACGATGGTTATAG 60.620 40.741 0.00 0.00 36.24 1.31
189 191 6.844696 TGATTCAAGAACGATGGTTATAGC 57.155 37.500 0.00 0.00 36.24 2.97
196 233 5.360591 AGAACGATGGTTATAGCTCCTTTG 58.639 41.667 0.00 0.00 36.24 2.77
197 234 3.467803 ACGATGGTTATAGCTCCTTTGC 58.532 45.455 0.00 0.00 0.00 3.68
202 239 4.199310 TGGTTATAGCTCCTTTGCATGTC 58.801 43.478 0.00 0.00 34.99 3.06
215 252 3.469899 TGCATGTCGTGATTTTGCTAC 57.530 42.857 0.00 0.00 34.47 3.58
223 260 4.154195 GTCGTGATTTTGCTACCATCAAGT 59.846 41.667 0.00 0.00 30.93 3.16
224 261 4.391830 TCGTGATTTTGCTACCATCAAGTC 59.608 41.667 0.00 0.00 30.93 3.01
227 264 2.107950 TTTGCTACCATCAAGTCCGG 57.892 50.000 0.00 0.00 0.00 5.14
257 296 2.514458 AGGGAAGCCAATCAAATCGT 57.486 45.000 0.00 0.00 0.00 3.73
267 306 4.025229 GCCAATCAAATCGTGCGTATCTTA 60.025 41.667 0.00 0.00 0.00 2.10
277 316 4.560035 TCGTGCGTATCTTAGCTTGTAAAC 59.440 41.667 0.00 0.00 0.00 2.01
279 318 3.861113 TGCGTATCTTAGCTTGTAAACCG 59.139 43.478 0.00 0.00 0.00 4.44
280 319 3.861689 GCGTATCTTAGCTTGTAAACCGT 59.138 43.478 0.00 0.00 0.00 4.83
304 344 7.573096 CGTGGAATTTGTTGCTAGTAATCACTT 60.573 37.037 0.00 0.00 36.14 3.16
305 345 8.726988 GTGGAATTTGTTGCTAGTAATCACTTA 58.273 33.333 0.00 0.00 36.14 2.24
328 368 4.729595 CATGCAATGCACGCTGATATTAT 58.270 39.130 11.23 0.00 43.04 1.28
334 374 4.834357 TGCACGCTGATATTATGCATTT 57.166 36.364 3.54 0.00 41.18 2.32
340 380 9.003112 GCACGCTGATATTATGCATTTTATTAG 57.997 33.333 3.54 9.77 36.30 1.73
363 403 9.953565 TTAGTTGCACAATAATAGTACTTCCTT 57.046 29.630 0.00 0.00 0.00 3.36
369 415 7.490000 CACAATAATAGTACTTCCTTCGTCCT 58.510 38.462 0.00 0.00 0.00 3.85
376 422 6.416631 AGTACTTCCTTCGTCCTAAAAAGT 57.583 37.500 0.00 0.00 0.00 2.66
399 445 4.307443 TGTCTTGATGTATCTAGGCACG 57.693 45.455 6.53 0.00 38.86 5.34
407 453 6.040247 TGATGTATCTAGGCACGTTTTAGTG 58.960 40.000 0.00 0.00 44.47 2.74
408 454 4.751060 TGTATCTAGGCACGTTTTAGTGG 58.249 43.478 0.00 0.00 42.09 4.00
413 468 4.990426 TCTAGGCACGTTTTAGTGGTAAAC 59.010 41.667 0.00 0.00 42.09 2.01
414 469 3.543665 AGGCACGTTTTAGTGGTAAACA 58.456 40.909 0.00 0.00 42.09 2.83
443 498 9.645059 TTCATGTCTAGACAAATCTAAGACAAG 57.355 33.333 28.43 1.31 45.41 3.16
445 500 6.993079 TGTCTAGACAAATCTAAGACAAGCA 58.007 36.000 23.24 0.00 39.72 3.91
459 514 3.383185 AGACAAGCATTTTTGGGACGAAA 59.617 39.130 0.00 0.00 32.32 3.46
519 577 9.953565 TTAGAGGCATATTGGGTATGTTATTAC 57.046 33.333 0.00 0.00 41.86 1.89
524 582 9.509956 GGCATATTGGGTATGTTATTACTTACA 57.490 33.333 9.32 0.00 41.86 2.41
527 585 9.734984 ATATTGGGTATGTTATTACTTACAGGC 57.265 33.333 9.32 0.00 36.90 4.85
528 586 6.818281 TGGGTATGTTATTACTTACAGGCT 57.182 37.500 9.32 0.00 36.90 4.58
529 587 7.917730 TGGGTATGTTATTACTTACAGGCTA 57.082 36.000 9.32 0.00 36.90 3.93
530 588 8.321621 TGGGTATGTTATTACTTACAGGCTAA 57.678 34.615 9.32 0.00 36.90 3.09
531 589 8.770322 TGGGTATGTTATTACTTACAGGCTAAA 58.230 33.333 9.32 0.00 36.90 1.85
532 590 9.788889 GGGTATGTTATTACTTACAGGCTAAAT 57.211 33.333 9.32 0.00 36.90 1.40
536 594 7.981142 TGTTATTACTTACAGGCTAAATGTGC 58.019 34.615 0.00 0.00 32.02 4.57
537 595 7.608376 TGTTATTACTTACAGGCTAAATGTGCA 59.392 33.333 0.00 0.00 32.02 4.57
547 605 6.263168 ACAGGCTAAATGTGCACTAAATATCC 59.737 38.462 19.41 10.82 0.00 2.59
553 611 3.808728 TGTGCACTAAATATCCTGAGCC 58.191 45.455 19.41 0.00 0.00 4.70
558 616 4.263243 GCACTAAATATCCTGAGCCCTCAT 60.263 45.833 0.00 0.00 39.13 2.90
564 622 1.883678 TCCTGAGCCCTCATCATTCA 58.116 50.000 0.00 0.00 39.13 2.57
577 635 6.994496 CCCTCATCATTCAAGCAATCTAAGTA 59.006 38.462 0.00 0.00 0.00 2.24
579 637 7.714377 CCTCATCATTCAAGCAATCTAAGTAGT 59.286 37.037 0.00 0.00 0.00 2.73
599 657 8.797350 AGTAGTTCAATGACATGATTTGATGA 57.203 30.769 0.00 0.00 0.00 2.92
628 686 8.615878 AGATTAATTGTAATAGTATTGGCGCA 57.384 30.769 10.83 0.00 29.69 6.09
629 687 9.062524 AGATTAATTGTAATAGTATTGGCGCAA 57.937 29.630 10.83 0.00 29.69 4.85
630 688 9.840427 GATTAATTGTAATAGTATTGGCGCAAT 57.160 29.630 10.83 9.96 32.89 3.56
632 690 7.928908 AATTGTAATAGTATTGGCGCAATTG 57.071 32.000 10.83 0.00 35.54 2.32
635 693 6.950545 TGTAATAGTATTGGCGCAATTGTAC 58.049 36.000 10.83 4.67 35.54 2.90
637 695 1.668751 AGTATTGGCGCAATTGTACCG 59.331 47.619 10.83 3.43 35.54 4.02
638 696 0.378962 TATTGGCGCAATTGTACCGC 59.621 50.000 17.29 17.29 46.34 5.68
639 697 1.312371 ATTGGCGCAATTGTACCGCT 61.312 50.000 22.34 6.23 46.29 5.52
640 698 0.673956 TTGGCGCAATTGTACCGCTA 60.674 50.000 22.34 16.66 46.29 4.26
643 701 1.135632 GGCGCAATTGTACCGCTAAAA 60.136 47.619 22.34 0.00 46.29 1.52
703 778 3.206150 GTGGATAAAGTCGGCATGATGT 58.794 45.455 0.00 0.00 0.00 3.06
709 784 4.853924 AAAGTCGGCATGATGTTTTTCT 57.146 36.364 0.00 0.00 0.00 2.52
714 789 6.149633 AGTCGGCATGATGTTTTTCTAAAAC 58.850 36.000 0.00 7.83 0.00 2.43
995 1101 4.570663 CGCCCAGATCCGACCGAC 62.571 72.222 0.00 0.00 0.00 4.79
1095 1201 4.125695 AGCGACGACCGGGTAAGC 62.126 66.667 6.32 4.59 39.04 3.09
1096 1202 4.424566 GCGACGACCGGGTAAGCA 62.425 66.667 6.32 0.00 39.04 3.91
1097 1203 2.259204 CGACGACCGGGTAAGCAA 59.741 61.111 6.32 0.00 33.91 3.91
1098 1204 1.153706 CGACGACCGGGTAAGCAAT 60.154 57.895 6.32 0.00 33.91 3.56
1099 1205 0.101040 CGACGACCGGGTAAGCAATA 59.899 55.000 6.32 0.00 33.91 1.90
1100 1206 1.849097 GACGACCGGGTAAGCAATAG 58.151 55.000 6.32 0.00 0.00 1.73
1147 1259 4.015406 TCGCATCTGGGCCGTGTT 62.015 61.111 0.00 0.00 0.00 3.32
1149 1261 3.134127 GCATCTGGGCCGTGTTCC 61.134 66.667 0.00 0.00 0.00 3.62
1164 1276 2.038269 TTCCGGTGCCTGATTTCGC 61.038 57.895 0.00 0.00 0.00 4.70
1166 1278 3.118454 CGGTGCCTGATTTCGCGT 61.118 61.111 5.77 0.00 0.00 6.01
1169 1281 0.454452 GGTGCCTGATTTCGCGTTTC 60.454 55.000 5.77 2.18 0.00 2.78
1171 1283 0.516877 TGCCTGATTTCGCGTTTCTG 59.483 50.000 5.77 5.87 0.00 3.02
1172 1284 0.796312 GCCTGATTTCGCGTTTCTGA 59.204 50.000 5.77 0.00 0.00 3.27
1176 1288 3.848019 CCTGATTTCGCGTTTCTGATTTG 59.152 43.478 5.77 0.00 0.00 2.32
1180 1294 0.796312 TCGCGTTTCTGATTTGGCTC 59.204 50.000 5.77 0.00 0.00 4.70
1188 1302 3.071874 TCTGATTTGGCTCGATTGGTT 57.928 42.857 0.00 0.00 0.00 3.67
1189 1303 3.009723 TCTGATTTGGCTCGATTGGTTC 58.990 45.455 0.00 0.00 0.00 3.62
1190 1304 2.091541 TGATTTGGCTCGATTGGTTCC 58.908 47.619 0.00 0.00 0.00 3.62
1301 1415 4.719616 GCGTTCGAGCACAACCGC 62.720 66.667 0.00 0.00 37.05 5.68
1406 1520 1.941734 GAAGAGCGCCGATGTCGAG 60.942 63.158 2.29 0.00 43.02 4.04
1556 1685 4.299316 GATGATTGCGGCGCCGTC 62.299 66.667 45.02 36.08 42.09 4.79
1742 1883 1.266718 GTTGATGCCGTTGAGAAGCAA 59.733 47.619 0.00 0.00 40.46 3.91
1782 1923 7.959651 CCTCTCAAACGAGAATTTTGTTCATAG 59.040 37.037 0.00 0.00 39.06 2.23
1785 1926 6.855914 TCAAACGAGAATTTTGTTCATAGTGC 59.144 34.615 0.00 0.00 35.75 4.40
1790 1931 2.987413 TTTTGTTCATAGTGCGCAGG 57.013 45.000 12.22 0.19 0.00 4.85
1791 1932 1.890876 TTTGTTCATAGTGCGCAGGT 58.109 45.000 12.22 3.24 0.00 4.00
1797 1938 1.066215 TCATAGTGCGCAGGTCAATGT 60.066 47.619 12.22 0.00 0.00 2.71
1800 1941 2.113860 AGTGCGCAGGTCAATGTTAT 57.886 45.000 12.22 0.00 0.00 1.89
1801 1942 3.260475 AGTGCGCAGGTCAATGTTATA 57.740 42.857 12.22 0.00 0.00 0.98
1802 1943 2.936498 AGTGCGCAGGTCAATGTTATAC 59.064 45.455 12.22 0.00 0.00 1.47
1803 1944 2.675844 GTGCGCAGGTCAATGTTATACA 59.324 45.455 12.22 0.00 0.00 2.29
1804 1945 3.126171 GTGCGCAGGTCAATGTTATACAA 59.874 43.478 12.22 0.00 0.00 2.41
1806 1947 3.374058 GCGCAGGTCAATGTTATACAAGT 59.626 43.478 0.30 0.00 0.00 3.16
1807 1948 4.569162 GCGCAGGTCAATGTTATACAAGTA 59.431 41.667 0.30 0.00 0.00 2.24
1808 1949 5.276868 GCGCAGGTCAATGTTATACAAGTAG 60.277 44.000 0.30 0.00 0.00 2.57
1814 1958 8.693625 AGGTCAATGTTATACAAGTAGGAGTAC 58.306 37.037 0.00 0.00 0.00 2.73
1857 2001 2.413453 GCAGGAGAGTTCGATTGTCAAC 59.587 50.000 0.00 0.00 0.00 3.18
1866 2010 0.874390 CGATTGTCAACCAGGGTGTG 59.126 55.000 3.79 0.09 0.00 3.82
1878 2022 0.037303 AGGGTGTGGCAGATTCTGTG 59.963 55.000 14.90 0.00 33.43 3.66
1902 2046 2.322355 AGAAGAGGCATCCAATGTCG 57.678 50.000 0.00 0.00 40.53 4.35
1923 2067 1.066215 TCGCTATTTCAGAAGCCTGCA 60.066 47.619 0.00 0.00 40.20 4.41
1965 2109 2.158813 AGGAAAGAAAGTGCCGTCTTCA 60.159 45.455 0.00 0.00 32.90 3.02
1983 2127 1.678970 ATCAGCCAAAAGGCGGTCC 60.679 57.895 6.54 0.00 40.23 4.46
1985 2129 1.978617 CAGCCAAAAGGCGGTCCAT 60.979 57.895 0.19 0.00 40.23 3.41
1989 2133 1.535204 CCAAAAGGCGGTCCATGCTT 61.535 55.000 0.00 0.00 33.74 3.91
1995 2139 2.579201 CGGTCCATGCTTCGTCCT 59.421 61.111 0.00 0.00 0.00 3.85
2004 2148 0.179032 TGCTTCGTCCTGCAAAGGAA 60.179 50.000 0.00 0.55 40.06 3.36
2077 2221 2.930682 GTTGCTCAGAAAGGGTCGATAC 59.069 50.000 0.00 0.00 0.00 2.24
2172 2316 5.420725 TTGCTTCAAGGATTAGTCAGCTA 57.579 39.130 0.00 0.00 0.00 3.32
2189 2333 1.754226 GCTAGAGTCTGCAAGTAGGCT 59.246 52.381 1.86 0.00 34.80 4.58
2250 2394 4.679654 CGGACAAGCAAGGTTTGTAATTTC 59.320 41.667 0.00 0.00 38.78 2.17
2260 2404 6.610075 AGGTTTGTAATTTCCTGATGCATT 57.390 33.333 0.00 0.00 0.00 3.56
2270 2414 4.707030 TCCTGATGCATTGTGTGAATTC 57.293 40.909 0.00 0.00 0.00 2.17
2275 2419 3.706802 TGCATTGTGTGAATTCAACGT 57.293 38.095 10.35 2.05 0.00 3.99
2286 2430 6.577427 GTGTGAATTCAACGTTATGGAGTTTC 59.423 38.462 10.35 3.24 0.00 2.78
2287 2431 6.084277 GTGAATTCAACGTTATGGAGTTTCC 58.916 40.000 10.35 0.00 36.96 3.13
2298 2442 3.924114 TGGAGTTTCCAGTCTCACAAA 57.076 42.857 0.00 0.00 42.67 2.83
2299 2443 4.229304 TGGAGTTTCCAGTCTCACAAAA 57.771 40.909 0.00 0.00 42.67 2.44
2300 2444 3.945285 TGGAGTTTCCAGTCTCACAAAAC 59.055 43.478 0.00 0.00 42.67 2.43
2301 2445 3.945285 GGAGTTTCCAGTCTCACAAAACA 59.055 43.478 0.00 0.00 36.28 2.83
2302 2446 4.201920 GGAGTTTCCAGTCTCACAAAACAC 60.202 45.833 0.00 0.00 36.28 3.32
2342 2487 2.746279 TTTCAGGGGTTCTGCAAAGA 57.254 45.000 0.00 0.00 43.06 2.52
2343 2488 1.981256 TTCAGGGGTTCTGCAAAGAC 58.019 50.000 0.00 0.00 43.06 3.01
2353 2498 4.037923 GGTTCTGCAAAGACATTCCAGAAA 59.962 41.667 0.00 0.00 42.22 2.52
2364 2509 4.922206 ACATTCCAGAAACAGCTTCCATA 58.078 39.130 0.00 0.00 34.21 2.74
2373 2518 5.471456 AGAAACAGCTTCCATAACAACTCAG 59.529 40.000 0.00 0.00 34.21 3.35
2378 2523 2.857186 TCCATAACAACTCAGCAGCA 57.143 45.000 0.00 0.00 0.00 4.41
2400 2545 5.587844 GCATGAACAAAGGTATCACTCAGAT 59.412 40.000 0.00 0.00 40.86 2.90
2401 2546 6.457934 GCATGAACAAAGGTATCACTCAGATG 60.458 42.308 0.00 0.00 37.57 2.90
2413 2559 2.095364 CACTCAGATGCCAAAAGTCAGC 60.095 50.000 0.00 0.00 0.00 4.26
2414 2560 2.156917 CTCAGATGCCAAAAGTCAGCA 58.843 47.619 0.00 0.00 41.50 4.41
2417 2563 3.943381 TCAGATGCCAAAAGTCAGCATAG 59.057 43.478 0.00 0.00 46.81 2.23
2420 2566 1.814394 TGCCAAAAGTCAGCATAGCAG 59.186 47.619 0.00 0.00 0.00 4.24
2433 2579 6.649973 GTCAGCATAGCAGTTGATTGATATCT 59.350 38.462 3.98 0.00 31.40 1.98
2442 2588 7.549842 AGCAGTTGATTGATATCTGATCATAGC 59.450 37.037 17.39 18.51 30.59 2.97
2462 2608 9.127277 TCATAGCAAAACAGTTTAACCTTACTT 57.873 29.630 0.00 0.00 0.00 2.24
2471 2617 8.843885 ACAGTTTAACCTTACTTAGATGGAAC 57.156 34.615 0.00 0.00 0.00 3.62
2505 2651 9.947433 TCCAGAAATGAAAATTCAAAGCATATT 57.053 25.926 0.00 0.00 41.13 1.28
2526 2672 4.233123 TGCTTTTTGCTCTGATGTTCTG 57.767 40.909 0.00 0.00 43.37 3.02
2541 2689 8.316946 TCTGATGTTCTGATGTCTGTCTTATTT 58.683 33.333 0.00 0.00 0.00 1.40
2582 2730 6.885735 AATGCGATTAAACATAAAAGCCAC 57.114 33.333 0.00 0.00 0.00 5.01
2675 2823 2.031919 TTCAACTGCGCCACCGAT 59.968 55.556 4.18 0.00 36.29 4.18
2681 2829 4.471908 TGCGCCACCGATGCATCT 62.472 61.111 23.73 3.74 36.29 2.90
2688 2836 1.452110 CACCGATGCATCTGGAAACA 58.548 50.000 31.08 0.00 39.59 2.83
2696 2844 6.427853 CCGATGCATCTGGAAACAAATATAGA 59.572 38.462 24.47 0.00 42.06 1.98
2768 2916 9.655769 CATGTTATTTCGAGTTATCCTCATTTG 57.344 33.333 0.00 0.00 40.48 2.32
2807 2955 6.660521 TCAAGGAGCATCACAATAAGACAATT 59.339 34.615 0.00 0.00 36.25 2.32
2870 3073 8.536175 AGTATTTGTTTCCAAAAGAAGACCAAA 58.464 29.630 0.00 0.00 43.43 3.28
2871 3074 9.157104 GTATTTGTTTCCAAAAGAAGACCAAAA 57.843 29.630 0.00 0.00 43.43 2.44
2872 3075 7.428282 TTTGTTTCCAAAAGAAGACCAAAAC 57.572 32.000 0.00 0.00 37.62 2.43
2932 3138 3.508744 ATTGTTATGCAGGGAAAAGCG 57.491 42.857 0.00 0.00 0.00 4.68
2942 3148 2.076863 AGGGAAAAGCGAACGATGAAG 58.923 47.619 0.00 0.00 0.00 3.02
2946 3152 0.798776 AAAGCGAACGATGAAGCTGG 59.201 50.000 0.00 0.00 40.17 4.85
2965 3171 5.046878 AGCTGGATTGAAAGAAATGCATCAA 60.047 36.000 0.00 0.00 37.27 2.57
3052 3258 5.565509 TCAAGGCAGGTATAAATTGTGTCA 58.434 37.500 0.00 0.00 0.00 3.58
3074 3314 8.772705 TGTCAAATTCAAAAAGCATTAACCATC 58.227 29.630 0.00 0.00 0.00 3.51
3079 3319 5.465935 TCAAAAAGCATTAACCATCGGTTC 58.534 37.500 0.72 0.00 43.05 3.62
3080 3320 4.450082 AAAAGCATTAACCATCGGTTCC 57.550 40.909 0.72 0.00 43.05 3.62
3087 3327 1.024579 AACCATCGGTTCCGTGATGC 61.025 55.000 11.04 0.00 43.05 3.91
3096 3336 4.509970 TCGGTTCCGTGATGCTATTTTATG 59.490 41.667 11.04 0.00 0.00 1.90
3099 3339 6.293407 CGGTTCCGTGATGCTATTTTATGAAT 60.293 38.462 2.82 0.00 0.00 2.57
3173 3430 5.789643 AATGGTAGTTTGTGACAAGCAAT 57.210 34.783 14.44 0.00 0.00 3.56
3191 3448 3.305608 GCAATTGGTTAGCAGCTCAGTTT 60.306 43.478 7.72 0.00 0.00 2.66
3228 3485 5.053978 AGACATTCAGGTTGAGGAACTTT 57.946 39.130 0.00 0.00 41.55 2.66
3233 3490 3.541632 TCAGGTTGAGGAACTTTGTCAC 58.458 45.455 0.00 0.00 41.55 3.67
3236 3493 1.602377 GTTGAGGAACTTTGTCACGGG 59.398 52.381 0.00 0.00 41.55 5.28
3240 3497 1.652563 GAACTTTGTCACGGGTGGC 59.347 57.895 0.00 0.00 35.37 5.01
3248 3505 1.338674 TGTCACGGGTGGCTAAGAATG 60.339 52.381 4.92 0.00 35.92 2.67
3258 3515 4.706962 GGTGGCTAAGAATGTCTCCAAATT 59.293 41.667 0.00 0.00 0.00 1.82
3313 3573 7.499438 TGATTTGTTCTTTTTAACGTGTGTG 57.501 32.000 0.00 0.00 31.76 3.82
3315 3575 7.595502 TGATTTGTTCTTTTTAACGTGTGTGTT 59.404 29.630 0.00 0.00 35.86 3.32
3318 3578 7.131498 TGTTCTTTTTAACGTGTGTGTTAGT 57.869 32.000 0.00 0.00 35.85 2.24
3329 3589 5.006358 ACGTGTGTGTTAGTTTGATGAACTC 59.994 40.000 0.00 0.00 45.40 3.01
3336 3596 5.527214 TGTTAGTTTGATGAACTCTGTGGTG 59.473 40.000 0.00 0.00 45.40 4.17
3339 3599 0.692476 TGATGAACTCTGTGGTGGGG 59.308 55.000 0.00 0.00 0.00 4.96
3377 3637 2.698797 ACGTGTCCAAAGGAAAGAGAGA 59.301 45.455 0.00 0.00 31.38 3.10
3378 3638 3.134081 ACGTGTCCAAAGGAAAGAGAGAA 59.866 43.478 0.00 0.00 31.38 2.87
3381 3641 5.277538 CGTGTCCAAAGGAAAGAGAGAAAAG 60.278 44.000 0.00 0.00 31.38 2.27
3386 3646 8.851145 GTCCAAAGGAAAGAGAGAAAAGTATTT 58.149 33.333 0.00 0.00 33.97 1.40
3411 3858 7.681939 TCATGTCTTTTTGTAATGGTAGTCC 57.318 36.000 0.00 0.00 0.00 3.85
3420 3867 0.322187 AATGGTAGTCCGTGGCAACC 60.322 55.000 0.00 0.00 36.30 3.77
3454 3962 8.752766 TGTAGTTAAGTTTCGAGAATAGTTGG 57.247 34.615 0.00 0.00 0.00 3.77
3461 3969 6.396450 AGTTTCGAGAATAGTTGGTAGGAAC 58.604 40.000 0.00 0.00 0.00 3.62
3465 3973 4.441634 CGAGAATAGTTGGTAGGAACCCAG 60.442 50.000 0.00 0.00 46.16 4.45
3488 3996 4.394729 GTTGAGGAACTTTGTCATGGGTA 58.605 43.478 0.00 0.00 41.55 3.69
3489 3997 4.286297 TGAGGAACTTTGTCATGGGTAG 57.714 45.455 0.00 0.00 41.55 3.18
3501 4009 1.134098 CATGGGTAGTGGGTGGCTAAG 60.134 57.143 0.00 0.00 0.00 2.18
3506 4014 2.238898 GGTAGTGGGTGGCTAAGAATGT 59.761 50.000 0.00 0.00 0.00 2.71
3508 4016 1.985159 AGTGGGTGGCTAAGAATGTGA 59.015 47.619 0.00 0.00 0.00 3.58
3522 4075 8.195436 GCTAAGAATGTGACCATGTTACTACTA 58.805 37.037 0.00 0.00 0.00 1.82
3626 4179 5.047566 TGGTAACTATGGATGAACATGGG 57.952 43.478 0.00 0.00 34.08 4.00
3635 4188 2.381911 GATGAACATGGGCCATGAACT 58.618 47.619 44.42 29.86 43.81 3.01
3637 4190 2.722094 TGAACATGGGCCATGAACTAC 58.278 47.619 44.42 29.10 43.81 2.73
3696 4285 7.980662 TGAAATTGTGACAGTGTTTCAATTCAT 59.019 29.630 25.35 17.44 37.61 2.57
3697 4286 8.721019 AAATTGTGACAGTGTTTCAATTCATT 57.279 26.923 25.35 15.45 37.61 2.57
3703 4292 7.489113 GTGACAGTGTTTCAATTCATTGAGTTT 59.511 33.333 0.00 0.00 46.34 2.66
3706 4295 9.868277 ACAGTGTTTCAATTCATTGAGTTTAAA 57.132 25.926 2.57 0.00 46.34 1.52
3734 4324 7.402054 TCTAGCCTTAAACAAATGAGATCCAA 58.598 34.615 0.00 0.00 0.00 3.53
3735 4325 8.055181 TCTAGCCTTAAACAAATGAGATCCAAT 58.945 33.333 0.00 0.00 0.00 3.16
3736 4326 6.870769 AGCCTTAAACAAATGAGATCCAATG 58.129 36.000 0.00 0.00 0.00 2.82
3816 4411 2.380084 GGTTCAGCACCAGTAATCGA 57.620 50.000 0.00 0.00 46.42 3.59
3819 4414 3.326747 GTTCAGCACCAGTAATCGAAGT 58.673 45.455 0.00 0.00 0.00 3.01
3820 4415 3.678056 TCAGCACCAGTAATCGAAGTT 57.322 42.857 0.00 0.00 0.00 2.66
3821 4416 3.325870 TCAGCACCAGTAATCGAAGTTG 58.674 45.455 0.00 0.00 0.00 3.16
3823 4418 3.067106 AGCACCAGTAATCGAAGTTGTG 58.933 45.455 0.00 0.00 0.00 3.33
3825 4420 3.496884 GCACCAGTAATCGAAGTTGTGAA 59.503 43.478 0.00 0.00 0.00 3.18
3837 4634 4.452455 CGAAGTTGTGAATAGCCTGTTCTT 59.548 41.667 2.80 0.00 0.00 2.52
3839 4636 5.695851 AGTTGTGAATAGCCTGTTCTTTG 57.304 39.130 2.80 0.00 0.00 2.77
4022 4819 6.314120 TCCCACTTATAAGGCGGTAGTAATA 58.686 40.000 16.73 0.00 0.00 0.98
4023 4820 6.782000 TCCCACTTATAAGGCGGTAGTAATAA 59.218 38.462 16.73 0.00 0.00 1.40
4024 4821 7.455638 TCCCACTTATAAGGCGGTAGTAATAAT 59.544 37.037 16.73 0.00 0.00 1.28
4025 4822 8.752187 CCCACTTATAAGGCGGTAGTAATAATA 58.248 37.037 16.73 0.00 0.00 0.98
4050 4847 3.077556 AGGCCGGCCTGTCAGTAG 61.078 66.667 46.71 0.00 46.22 2.57
4061 4858 5.071370 GGCCTGTCAGTAGATAGTAGCTTA 58.929 45.833 0.00 0.00 31.64 3.09
4064 4861 7.393796 GGCCTGTCAGTAGATAGTAGCTTATTA 59.606 40.741 0.00 0.00 31.64 0.98
4164 4965 9.836179 ATCCTTCTAATGTATAGTCAGATTCCT 57.164 33.333 0.00 0.00 0.00 3.36
4250 5051 1.078709 CGTGGTGTCTACTGGCAATG 58.921 55.000 0.00 0.00 0.00 2.82
4255 5056 3.146066 GGTGTCTACTGGCAATGTTTCA 58.854 45.455 0.00 0.00 0.00 2.69
4342 5143 5.645929 TGTTGTAAAGACATTACGGATGCAT 59.354 36.000 0.00 0.00 45.72 3.96
4343 5144 5.733226 TGTAAAGACATTACGGATGCATG 57.267 39.130 2.46 0.00 45.72 4.06
4376 5912 4.824479 TCCTGCTACAGTGATCAATTCA 57.176 40.909 0.00 0.00 0.00 2.57
4418 5963 2.035576 ACCACCTAGACAACACTCGAAC 59.964 50.000 0.00 0.00 0.00 3.95
4419 5964 2.609737 CCACCTAGACAACACTCGAACC 60.610 54.545 0.00 0.00 0.00 3.62
4420 5965 2.296471 CACCTAGACAACACTCGAACCT 59.704 50.000 0.00 0.00 0.00 3.50
4421 5966 2.963782 ACCTAGACAACACTCGAACCTT 59.036 45.455 0.00 0.00 0.00 3.50
4422 5967 3.243771 ACCTAGACAACACTCGAACCTTG 60.244 47.826 0.00 0.00 0.00 3.61
4423 5968 3.005472 CCTAGACAACACTCGAACCTTGA 59.995 47.826 0.00 0.00 0.00 3.02
4424 5969 3.536956 AGACAACACTCGAACCTTGAA 57.463 42.857 3.34 0.00 0.00 2.69
4448 5993 1.804151 CCAATTCTCCAAAAGCGACGA 59.196 47.619 0.00 0.00 0.00 4.20
4484 6032 4.284123 GCAGAAGCACCGTCATCA 57.716 55.556 0.00 0.00 41.58 3.07
4485 6033 1.790387 GCAGAAGCACCGTCATCAC 59.210 57.895 0.00 0.00 41.58 3.06
4496 6044 0.314302 CGTCATCACCCCGATCCTAC 59.686 60.000 0.00 0.00 29.21 3.18
4572 6122 3.986054 TCACTGCCAGGGACAACT 58.014 55.556 0.00 0.00 0.00 3.16
4626 6448 7.500892 CCTGAAAGCTAAGACTCTATACTCTGA 59.499 40.741 0.00 0.00 0.00 3.27
4634 6456 6.241882 AGACTCTATACTCTGACTGTGCTA 57.758 41.667 0.00 0.00 0.00 3.49
4650 6485 1.227764 CTACTGATGCCGCTGCCAT 60.228 57.895 0.00 0.00 36.33 4.40
4742 6580 1.204704 CAGCCACCATGACGTTCTCTA 59.795 52.381 0.00 0.00 0.00 2.43
4757 6596 5.010719 ACGTTCTCTATCACTTCTTCACCAA 59.989 40.000 0.00 0.00 0.00 3.67
4787 6626 1.766494 ATACCGACGTGTCCCATACA 58.234 50.000 0.00 0.00 35.06 2.29
4803 6642 5.105106 TCCCATACAGTCAACATACAACGAT 60.105 40.000 0.00 0.00 0.00 3.73
4916 6760 4.598036 ACACCCAATGAAGATCTCCAAT 57.402 40.909 0.00 0.00 0.00 3.16
4925 6769 7.881751 CCAATGAAGATCTCCAATAGAGCATTA 59.118 37.037 0.00 0.00 43.38 1.90
4926 6770 9.451002 CAATGAAGATCTCCAATAGAGCATTAT 57.549 33.333 0.00 0.00 43.38 1.28
4960 6804 0.188587 ACTAGATCCATGAGGGCCGA 59.811 55.000 0.00 0.00 36.21 5.54
5000 6846 6.239289 CCATCTTAGAGCAAAAAGAACCCAAA 60.239 38.462 0.00 0.00 35.47 3.28
5011 6857 0.893727 GAACCCAAAGACCACGCCAT 60.894 55.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.748403 GGCGATCCCTGCTGACATA 59.252 57.895 0.00 0.00 0.00 2.29
93 94 7.394016 TGAATCACTGAGTGGCTAAAAGATTA 58.606 34.615 13.33 0.00 33.87 1.75
95 96 5.809001 TGAATCACTGAGTGGCTAAAAGAT 58.191 37.500 13.33 0.00 33.87 2.40
106 107 3.256631 GGGCAAAACATGAATCACTGAGT 59.743 43.478 0.00 0.00 0.00 3.41
162 164 2.609459 ACCATCGTTCTTGAATCATCGC 59.391 45.455 0.00 0.00 0.00 4.58
169 171 5.128827 AGGAGCTATAACCATCGTTCTTGAA 59.871 40.000 0.00 0.00 33.17 2.69
171 173 4.950050 AGGAGCTATAACCATCGTTCTTG 58.050 43.478 0.00 0.00 33.17 3.02
180 182 4.199310 GACATGCAAAGGAGCTATAACCA 58.801 43.478 0.00 0.00 34.99 3.67
186 188 1.275010 TCACGACATGCAAAGGAGCTA 59.725 47.619 0.00 0.00 34.99 3.32
187 189 0.035317 TCACGACATGCAAAGGAGCT 59.965 50.000 0.00 0.00 34.99 4.09
188 190 1.089920 ATCACGACATGCAAAGGAGC 58.910 50.000 0.00 0.00 0.00 4.70
189 191 3.837213 AAATCACGACATGCAAAGGAG 57.163 42.857 0.00 0.00 0.00 3.69
196 233 2.161410 TGGTAGCAAAATCACGACATGC 59.839 45.455 0.00 0.00 37.28 4.06
197 234 4.094739 TGATGGTAGCAAAATCACGACATG 59.905 41.667 0.00 0.00 0.00 3.21
202 239 4.437390 GGACTTGATGGTAGCAAAATCACG 60.437 45.833 0.00 0.00 30.26 4.35
215 252 0.321671 ACAGTGTCCGGACTTGATGG 59.678 55.000 32.41 20.59 0.00 3.51
227 264 0.537653 GGCTTCCCTAGGACAGTGTC 59.462 60.000 15.24 15.24 0.00 3.67
257 296 3.861113 CGGTTTACAAGCTAAGATACGCA 59.139 43.478 0.00 0.00 0.00 5.24
267 306 3.634910 ACAAATTCCACGGTTTACAAGCT 59.365 39.130 0.00 0.00 0.00 3.74
277 316 5.123186 TGATTACTAGCAACAAATTCCACGG 59.877 40.000 0.00 0.00 0.00 4.94
279 318 7.145932 AGTGATTACTAGCAACAAATTCCAC 57.854 36.000 0.00 0.00 34.74 4.02
280 319 7.759489 AAGTGATTACTAGCAACAAATTCCA 57.241 32.000 0.00 0.00 35.69 3.53
304 344 1.381522 ATCAGCGTGCATTGCATGTA 58.618 45.000 26.93 15.89 46.10 2.29
305 345 1.381522 TATCAGCGTGCATTGCATGT 58.618 45.000 26.93 14.19 46.10 3.21
340 380 7.064253 ACGAAGGAAGTACTATTATTGTGCAAC 59.936 37.037 0.00 0.00 37.35 4.17
343 383 6.200475 GGACGAAGGAAGTACTATTATTGTGC 59.800 42.308 0.00 0.00 0.00 4.57
358 398 6.117488 AGACAAACTTTTTAGGACGAAGGAA 58.883 36.000 0.00 0.00 0.00 3.36
359 399 5.677567 AGACAAACTTTTTAGGACGAAGGA 58.322 37.500 0.00 0.00 0.00 3.36
361 401 7.011828 TCAAGACAAACTTTTTAGGACGAAG 57.988 36.000 0.00 0.00 36.61 3.79
362 402 6.988622 TCAAGACAAACTTTTTAGGACGAA 57.011 33.333 0.00 0.00 36.61 3.85
363 403 6.540914 ACATCAAGACAAACTTTTTAGGACGA 59.459 34.615 0.00 0.00 36.61 4.20
376 422 5.109210 CGTGCCTAGATACATCAAGACAAA 58.891 41.667 0.00 0.00 0.00 2.83
395 441 4.275838 TGTGTTTACCACTAAAACGTGC 57.724 40.909 0.00 0.00 44.81 5.34
399 445 8.349983 AGACATGAATGTGTTTACCACTAAAAC 58.650 33.333 0.00 0.00 44.81 2.43
407 453 7.667043 TTGTCTAGACATGAATGTGTTTACC 57.333 36.000 25.68 0.00 41.95 2.85
408 454 9.760660 GATTTGTCTAGACATGAATGTGTTTAC 57.239 33.333 25.68 6.74 41.95 2.01
413 468 9.591792 TCTTAGATTTGTCTAGACATGAATGTG 57.408 33.333 25.68 14.02 41.95 3.21
414 469 9.593134 GTCTTAGATTTGTCTAGACATGAATGT 57.407 33.333 25.68 21.44 45.16 2.71
422 477 8.485976 AATGCTTGTCTTAGATTTGTCTAGAC 57.514 34.615 16.32 16.32 0.00 2.59
443 498 9.233232 CTAATATTACTTTCGTCCCAAAAATGC 57.767 33.333 0.00 0.00 0.00 3.56
445 500 8.410912 GGCTAATATTACTTTCGTCCCAAAAAT 58.589 33.333 0.00 0.00 0.00 1.82
504 562 7.202972 AGCCTGTAAGTAATAACATACCCAA 57.797 36.000 0.00 0.00 30.44 4.12
506 564 9.788889 ATTTAGCCTGTAAGTAATAACATACCC 57.211 33.333 0.00 0.00 30.44 3.69
519 577 6.494893 TTTAGTGCACATTTAGCCTGTAAG 57.505 37.500 21.04 0.00 0.00 2.34
524 582 6.488006 CAGGATATTTAGTGCACATTTAGCCT 59.512 38.462 21.04 17.73 0.00 4.58
525 583 6.486657 TCAGGATATTTAGTGCACATTTAGCC 59.513 38.462 21.04 15.87 0.00 3.93
527 585 7.308229 GGCTCAGGATATTTAGTGCACATTTAG 60.308 40.741 21.04 2.09 0.00 1.85
528 586 6.486657 GGCTCAGGATATTTAGTGCACATTTA 59.513 38.462 21.04 5.48 0.00 1.40
529 587 5.300286 GGCTCAGGATATTTAGTGCACATTT 59.700 40.000 21.04 0.05 0.00 2.32
530 588 4.823989 GGCTCAGGATATTTAGTGCACATT 59.176 41.667 21.04 0.92 0.00 2.71
531 589 4.392940 GGCTCAGGATATTTAGTGCACAT 58.607 43.478 21.04 6.50 0.00 3.21
532 590 3.433598 GGGCTCAGGATATTTAGTGCACA 60.434 47.826 21.04 1.84 0.00 4.57
533 591 3.142174 GGGCTCAGGATATTTAGTGCAC 58.858 50.000 9.40 9.40 0.00 4.57
534 592 3.048600 AGGGCTCAGGATATTTAGTGCA 58.951 45.455 0.00 0.00 0.00 4.57
535 593 3.071602 TGAGGGCTCAGGATATTTAGTGC 59.928 47.826 0.00 0.00 34.14 4.40
536 594 4.963318 TGAGGGCTCAGGATATTTAGTG 57.037 45.455 0.00 0.00 34.14 2.74
537 595 5.158141 TGATGAGGGCTCAGGATATTTAGT 58.842 41.667 0.00 0.00 43.61 2.24
547 605 1.948145 GCTTGAATGATGAGGGCTCAG 59.052 52.381 0.00 0.00 43.61 3.35
553 611 6.939132 ACTTAGATTGCTTGAATGATGAGG 57.061 37.500 0.00 0.00 0.00 3.86
558 616 8.846943 TTGAACTACTTAGATTGCTTGAATGA 57.153 30.769 0.00 0.00 0.00 2.57
564 622 8.671921 CATGTCATTGAACTACTTAGATTGCTT 58.328 33.333 0.00 0.00 0.00 3.91
577 635 7.025365 CGTTCATCAAATCATGTCATTGAACT 58.975 34.615 16.52 4.22 39.49 3.01
579 637 7.119553 TCTCGTTCATCAAATCATGTCATTGAA 59.880 33.333 12.23 5.16 36.72 2.69
618 676 1.858399 GCGGTACAATTGCGCCAATAC 60.858 52.381 15.38 5.60 32.43 1.89
619 677 0.378962 GCGGTACAATTGCGCCAATA 59.621 50.000 15.38 0.00 32.43 1.90
620 678 1.138671 GCGGTACAATTGCGCCAAT 59.861 52.632 15.38 1.64 35.39 3.16
622 680 0.673956 TTAGCGGTACAATTGCGCCA 60.674 50.000 20.52 8.69 0.00 5.69
623 681 0.448593 TTTAGCGGTACAATTGCGCC 59.551 50.000 20.52 14.72 0.00 6.53
624 682 2.250348 TTTTAGCGGTACAATTGCGC 57.750 45.000 17.70 17.70 0.00 6.09
643 701 9.846248 GAAGACACATTATTGAGCAAATACTTT 57.154 29.630 0.00 0.00 30.21 2.66
648 706 8.844244 GGATAGAAGACACATTATTGAGCAAAT 58.156 33.333 0.00 0.00 0.00 2.32
651 709 6.888105 TGGATAGAAGACACATTATTGAGCA 58.112 36.000 0.00 0.00 0.00 4.26
652 710 7.792374 TTGGATAGAAGACACATTATTGAGC 57.208 36.000 0.00 0.00 0.00 4.26
679 754 3.884895 TCATGCCGACTTTATCCACATT 58.115 40.909 0.00 0.00 0.00 2.71
680 755 3.558931 TCATGCCGACTTTATCCACAT 57.441 42.857 0.00 0.00 0.00 3.21
681 756 3.205338 CATCATGCCGACTTTATCCACA 58.795 45.455 0.00 0.00 0.00 4.17
721 797 8.778059 TGTGGTTCTTTAGTAGGAATGGATTAT 58.222 33.333 0.00 0.00 0.00 1.28
723 799 7.027874 TGTGGTTCTTTAGTAGGAATGGATT 57.972 36.000 0.00 0.00 0.00 3.01
728 804 7.775561 GGATCAATGTGGTTCTTTAGTAGGAAT 59.224 37.037 0.00 0.00 0.00 3.01
929 1035 1.157513 TGGGGCTGACAGGAGTGTA 59.842 57.895 4.26 0.00 36.88 2.90
1095 1201 0.029834 GGAATGCGCTGGTGCTATTG 59.970 55.000 9.73 0.00 36.97 1.90
1096 1202 0.107017 AGGAATGCGCTGGTGCTATT 60.107 50.000 9.73 0.00 36.97 1.73
1097 1203 0.107017 AAGGAATGCGCTGGTGCTAT 60.107 50.000 9.73 0.00 36.97 2.97
1098 1204 0.322456 AAAGGAATGCGCTGGTGCTA 60.322 50.000 9.73 0.00 36.97 3.49
1099 1205 1.589716 GAAAGGAATGCGCTGGTGCT 61.590 55.000 9.73 0.76 36.97 4.40
1100 1206 1.153958 GAAAGGAATGCGCTGGTGC 60.154 57.895 9.73 0.00 0.00 5.01
1145 1257 1.794222 CGAAATCAGGCACCGGAAC 59.206 57.895 9.46 0.00 0.00 3.62
1147 1259 2.435938 GCGAAATCAGGCACCGGA 60.436 61.111 9.46 0.00 0.00 5.14
1149 1261 2.182614 AAACGCGAAATCAGGCACCG 62.183 55.000 15.93 0.00 0.00 4.94
1154 1266 3.747099 AATCAGAAACGCGAAATCAGG 57.253 42.857 15.93 4.66 0.00 3.86
1164 1276 3.419915 CAATCGAGCCAAATCAGAAACG 58.580 45.455 0.00 0.00 0.00 3.60
1166 1278 3.420893 ACCAATCGAGCCAAATCAGAAA 58.579 40.909 0.00 0.00 0.00 2.52
1169 1281 2.098117 GGAACCAATCGAGCCAAATCAG 59.902 50.000 0.00 0.00 0.00 2.90
1171 1283 2.851805 GGAACCAATCGAGCCAAATC 57.148 50.000 0.00 0.00 0.00 2.17
1579 1708 4.087892 GCTCCTGAGGCGCTTCCA 62.088 66.667 17.65 6.89 37.29 3.53
1623 1752 1.233019 CTATCCAAGCGGCAAGATGG 58.767 55.000 1.45 5.29 0.00 3.51
1711 1852 2.707849 GCATCAACAGCAGCCAGGG 61.708 63.158 0.00 0.00 0.00 4.45
1742 1883 2.100879 GAGAGGTCACCTGCAACGGT 62.101 60.000 0.00 0.00 37.93 4.83
1782 1923 2.675844 TGTATAACATTGACCTGCGCAC 59.324 45.455 5.66 0.00 0.00 5.34
1785 1926 5.234329 CCTACTTGTATAACATTGACCTGCG 59.766 44.000 0.00 0.00 0.00 5.18
1801 1942 9.436957 CACATGATTTTAAGTACTCCTACTTGT 57.563 33.333 0.00 0.00 42.26 3.16
1802 1943 9.653287 TCACATGATTTTAAGTACTCCTACTTG 57.347 33.333 0.00 0.00 42.26 3.16
1817 1961 8.533657 TCTCCTGCAAATAATTCACATGATTTT 58.466 29.630 0.00 0.00 0.00 1.82
1821 1965 6.182627 ACTCTCCTGCAAATAATTCACATGA 58.817 36.000 0.00 0.00 0.00 3.07
1857 2001 0.679002 CAGAATCTGCCACACCCTGG 60.679 60.000 0.00 0.00 44.08 4.45
1866 2010 3.055530 TCTTCTTCTCCACAGAATCTGCC 60.056 47.826 10.62 0.00 38.02 4.85
1878 2022 3.212685 CATTGGATGCCTCTTCTTCTCC 58.787 50.000 0.00 0.00 0.00 3.71
1902 2046 1.328986 GCAGGCTTCTGAAATAGCGAC 59.671 52.381 0.00 0.00 40.86 5.19
1983 2127 0.169672 CCTTTGCAGGACGAAGCATG 59.830 55.000 0.00 0.00 44.19 4.06
1985 2129 1.449782 TCCTTTGCAGGACGAAGCA 59.550 52.632 0.00 0.00 45.20 3.91
1995 2139 1.408702 GGTGAGCTGTTTTCCTTTGCA 59.591 47.619 0.00 0.00 0.00 4.08
2004 2148 1.615392 GCAGGAAATGGTGAGCTGTTT 59.385 47.619 0.00 0.00 0.00 2.83
2077 2221 2.632996 TCCTGAAGTTCAGTGTACCCAG 59.367 50.000 27.07 12.28 42.80 4.45
2147 2291 4.036144 GCTGACTAATCCTTGAAGCAATCC 59.964 45.833 0.00 0.00 0.00 3.01
2148 2292 4.880696 AGCTGACTAATCCTTGAAGCAATC 59.119 41.667 0.00 0.00 0.00 2.67
2172 2316 0.901124 CCAGCCTACTTGCAGACTCT 59.099 55.000 0.00 0.00 0.00 3.24
2189 2333 7.127186 TCACCTTAGGATGAATATCTTTCACCA 59.873 37.037 4.77 0.00 33.68 4.17
2250 2394 4.443913 TGAATTCACACAATGCATCAGG 57.556 40.909 3.38 0.00 0.00 3.86
2260 2404 5.060506 ACTCCATAACGTTGAATTCACACA 58.939 37.500 11.99 0.00 0.00 3.72
2286 2430 6.795399 ACTTATTTGTGTTTTGTGAGACTGG 58.205 36.000 0.00 0.00 0.00 4.00
2287 2431 7.220683 CCAACTTATTTGTGTTTTGTGAGACTG 59.779 37.037 0.00 0.00 32.71 3.51
2288 2432 7.093945 ACCAACTTATTTGTGTTTTGTGAGACT 60.094 33.333 0.00 0.00 32.71 3.24
2289 2433 7.033185 ACCAACTTATTTGTGTTTTGTGAGAC 58.967 34.615 0.00 0.00 32.71 3.36
2290 2434 7.164230 ACCAACTTATTTGTGTTTTGTGAGA 57.836 32.000 0.00 0.00 32.71 3.27
2291 2435 7.826260 AACCAACTTATTTGTGTTTTGTGAG 57.174 32.000 0.00 0.00 32.71 3.51
2294 2438 6.652900 AGCAAACCAACTTATTTGTGTTTTGT 59.347 30.769 0.00 0.00 36.89 2.83
2295 2439 7.064490 AGAGCAAACCAACTTATTTGTGTTTTG 59.936 33.333 0.00 0.00 36.89 2.44
2297 2441 6.639563 AGAGCAAACCAACTTATTTGTGTTT 58.360 32.000 0.00 0.00 38.27 2.83
2298 2442 6.220726 AGAGCAAACCAACTTATTTGTGTT 57.779 33.333 0.00 0.00 37.96 3.32
2299 2443 5.852282 AGAGCAAACCAACTTATTTGTGT 57.148 34.783 0.00 0.00 37.96 3.72
2300 2444 8.816640 AAATAGAGCAAACCAACTTATTTGTG 57.183 30.769 0.00 0.00 37.96 3.33
2301 2445 8.637986 TGAAATAGAGCAAACCAACTTATTTGT 58.362 29.630 0.00 0.00 37.96 2.83
2302 2446 9.132521 CTGAAATAGAGCAAACCAACTTATTTG 57.867 33.333 0.00 0.00 38.57 2.32
2342 2487 3.228188 TGGAAGCTGTTTCTGGAATGT 57.772 42.857 4.26 0.00 36.03 2.71
2343 2488 5.183713 TGTTATGGAAGCTGTTTCTGGAATG 59.816 40.000 4.26 0.00 36.03 2.67
2353 2498 3.077359 GCTGAGTTGTTATGGAAGCTGT 58.923 45.455 0.00 0.00 0.00 4.40
2364 2509 2.300433 TGTTCATGCTGCTGAGTTGTT 58.700 42.857 0.00 0.00 0.00 2.83
2373 2518 3.441572 AGTGATACCTTTGTTCATGCTGC 59.558 43.478 0.00 0.00 0.00 5.25
2378 2523 5.587844 GCATCTGAGTGATACCTTTGTTCAT 59.412 40.000 0.00 0.00 33.36 2.57
2400 2545 1.814394 CTGCTATGCTGACTTTTGGCA 59.186 47.619 0.00 0.00 40.32 4.92
2401 2546 1.815003 ACTGCTATGCTGACTTTTGGC 59.185 47.619 3.58 0.00 0.00 4.52
2413 2559 8.773404 TGATCAGATATCAATCAACTGCTATG 57.227 34.615 14.90 0.00 34.28 2.23
2417 2563 7.333672 TGCTATGATCAGATATCAATCAACTGC 59.666 37.037 18.97 19.95 33.44 4.40
2433 2579 7.759489 AGGTTAAACTGTTTTGCTATGATCA 57.241 32.000 11.48 0.00 0.00 2.92
2442 2588 9.893305 CCATCTAAGTAAGGTTAAACTGTTTTG 57.107 33.333 11.48 0.00 0.00 2.44
2449 2595 9.498176 TTCAGTTCCATCTAAGTAAGGTTAAAC 57.502 33.333 0.00 0.00 0.00 2.01
2541 2689 7.857734 TCGCATTTACCATATTTCAGAAAGA 57.142 32.000 1.28 0.00 0.00 2.52
2582 2730 1.277273 TGCAAGAGGACAGTCAGATGG 59.723 52.381 2.17 0.00 0.00 3.51
2652 2800 0.179124 GTGGCGCAGTTGAACCAAAA 60.179 50.000 10.83 0.00 33.03 2.44
2665 2813 3.945434 CAGATGCATCGGTGGCGC 61.945 66.667 20.67 0.00 0.00 6.53
2768 2916 9.643693 TGATGCTCCTTGAAAGAAATTTAATTC 57.356 29.630 7.98 7.98 0.00 2.17
2907 3113 4.454728 TTTCCCTGCATAACAATTGCTC 57.545 40.909 5.05 0.00 40.77 4.26
2913 3119 2.509569 TCGCTTTTCCCTGCATAACAA 58.490 42.857 0.00 0.00 0.00 2.83
2918 3124 0.605319 TCGTTCGCTTTTCCCTGCAT 60.605 50.000 0.00 0.00 0.00 3.96
2932 3138 4.393062 TCTTTCAATCCAGCTTCATCGTTC 59.607 41.667 0.00 0.00 0.00 3.95
2942 3148 4.751060 TGATGCATTTCTTTCAATCCAGC 58.249 39.130 0.00 0.00 0.00 4.85
2946 3152 5.346822 ACGCTTTGATGCATTTCTTTCAATC 59.653 36.000 0.00 0.00 0.00 2.67
2965 3171 1.098712 TGGCCTTGAAACGAACGCTT 61.099 50.000 3.32 0.00 0.00 4.68
3052 3258 6.934083 ACCGATGGTTAATGCTTTTTGAATTT 59.066 30.769 0.00 0.00 27.29 1.82
3074 3314 4.509970 TCATAAAATAGCATCACGGAACCG 59.490 41.667 11.83 11.83 46.03 4.44
3079 3319 7.701924 ACAACAATTCATAAAATAGCATCACGG 59.298 33.333 0.00 0.00 0.00 4.94
3080 3320 8.619146 ACAACAATTCATAAAATAGCATCACG 57.381 30.769 0.00 0.00 0.00 4.35
3155 3412 4.932146 ACCAATTGCTTGTCACAAACTAC 58.068 39.130 0.00 0.00 0.00 2.73
3173 3430 2.158682 TCCAAACTGAGCTGCTAACCAA 60.159 45.455 0.15 0.00 0.00 3.67
3208 3465 4.536765 ACAAAGTTCCTCAACCTGAATGT 58.463 39.130 0.00 0.00 32.22 2.71
3209 3466 4.580167 TGACAAAGTTCCTCAACCTGAATG 59.420 41.667 0.00 0.00 32.22 2.67
3228 3485 0.981183 ATTCTTAGCCACCCGTGACA 59.019 50.000 0.00 0.00 0.00 3.58
3233 3490 1.473434 GGAGACATTCTTAGCCACCCG 60.473 57.143 0.00 0.00 0.00 5.28
3236 3493 5.415701 TGAATTTGGAGACATTCTTAGCCAC 59.584 40.000 0.00 0.00 42.32 5.01
3240 3497 8.340618 TCCTTTGAATTTGGAGACATTCTTAG 57.659 34.615 0.00 0.00 42.32 2.18
3248 3505 9.541143 TGTTATTTTTCCTTTGAATTTGGAGAC 57.459 29.630 0.00 0.00 0.00 3.36
3285 3544 9.965748 CACACGTTAAAAAGAACAAATCAAATT 57.034 25.926 0.00 0.00 0.00 1.82
3296 3555 8.288208 TCAAACTAACACACACGTTAAAAAGAA 58.712 29.630 0.00 0.00 31.19 2.52
3298 3557 8.520258 CATCAAACTAACACACACGTTAAAAAG 58.480 33.333 0.00 0.00 31.19 2.27
3302 3561 6.905544 TCATCAAACTAACACACACGTTAA 57.094 33.333 0.00 0.00 31.19 2.01
3303 3562 6.535865 AGTTCATCAAACTAACACACACGTTA 59.464 34.615 0.00 0.00 46.55 3.18
3306 3566 5.403897 AGTTCATCAAACTAACACACACG 57.596 39.130 0.00 0.00 46.55 4.49
3318 3578 2.488891 CCCCACCACAGAGTTCATCAAA 60.489 50.000 0.00 0.00 0.00 2.69
3339 3599 4.510571 ACACGTGGACATATTCTTAACCC 58.489 43.478 21.57 0.00 0.00 4.11
3342 3602 5.408880 TGGACACGTGGACATATTCTTAA 57.591 39.130 21.57 0.00 0.00 1.85
3350 3610 0.762418 TCCTTTGGACACGTGGACAT 59.238 50.000 21.57 0.00 0.00 3.06
3386 3646 7.094975 CGGACTACCATTACAAAAAGACATGAA 60.095 37.037 0.00 0.00 35.59 2.57
3387 3647 6.370442 CGGACTACCATTACAAAAAGACATGA 59.630 38.462 0.00 0.00 35.59 3.07
3389 3649 6.148811 CACGGACTACCATTACAAAAAGACAT 59.851 38.462 0.00 0.00 35.59 3.06
3393 3653 4.379082 GCCACGGACTACCATTACAAAAAG 60.379 45.833 0.00 0.00 35.59 2.27
3420 3867 7.007313 TCGAAACTTAACTACAAACCAGTTG 57.993 36.000 0.00 0.00 43.43 3.16
3429 3876 8.362639 ACCAACTATTCTCGAAACTTAACTACA 58.637 33.333 0.00 0.00 0.00 2.74
3442 3950 3.449737 TGGGTTCCTACCAACTATTCTCG 59.550 47.826 0.00 0.00 46.96 4.04
3454 3962 1.652947 TCCTCAACCTGGGTTCCTAC 58.347 55.000 1.55 0.00 36.00 3.18
3461 3969 2.230660 GACAAAGTTCCTCAACCTGGG 58.769 52.381 0.00 0.00 32.22 4.45
3465 3973 2.558359 CCCATGACAAAGTTCCTCAACC 59.442 50.000 0.00 0.00 32.22 3.77
3488 3996 1.985159 TCACATTCTTAGCCACCCACT 59.015 47.619 0.00 0.00 0.00 4.00
3489 3997 2.084546 GTCACATTCTTAGCCACCCAC 58.915 52.381 0.00 0.00 0.00 4.61
3501 4009 6.477033 CAGCTAGTAGTAACATGGTCACATTC 59.523 42.308 0.00 0.00 34.35 2.67
3506 4014 5.262009 AGTCAGCTAGTAGTAACATGGTCA 58.738 41.667 0.00 0.00 0.00 4.02
3508 4016 5.299782 GCTAGTCAGCTAGTAGTAACATGGT 59.700 44.000 0.00 0.00 44.93 3.55
3531 4084 3.350219 TGGATCAAAAGGGAGTAGTGC 57.650 47.619 0.00 0.00 0.00 4.40
3535 4088 7.773690 GCTAAAAGTATGGATCAAAAGGGAGTA 59.226 37.037 0.00 0.00 0.00 2.59
3586 4139 2.162681 CCAGCAAGAACCAGGGTAAAG 58.837 52.381 0.00 0.00 0.00 1.85
3626 4179 2.614057 GCATACCAGTGTAGTTCATGGC 59.386 50.000 0.00 0.00 36.21 4.40
3635 4188 4.568072 ATGTTTCAGGCATACCAGTGTA 57.432 40.909 0.00 0.00 39.06 2.90
3637 4190 4.460382 AGAAATGTTTCAGGCATACCAGTG 59.540 41.667 8.09 0.00 39.61 3.66
3696 4285 9.787435 TGTTTAAGGCTAGAGATTTAAACTCAA 57.213 29.630 20.07 8.22 42.32 3.02
3697 4286 9.787435 TTGTTTAAGGCTAGAGATTTAAACTCA 57.213 29.630 20.07 11.71 42.32 3.41
3706 4295 7.936301 GGATCTCATTTGTTTAAGGCTAGAGAT 59.064 37.037 0.00 0.00 41.49 2.75
3712 4301 6.127253 CCATTGGATCTCATTTGTTTAAGGCT 60.127 38.462 0.00 0.00 0.00 4.58
3714 4303 7.408756 TCCATTGGATCTCATTTGTTTAAGG 57.591 36.000 0.00 0.00 0.00 2.69
3758 4353 9.668497 GGTAGTTTCAACTTCCATAAACTAGAT 57.332 33.333 9.79 0.00 43.56 1.98
3809 4404 5.581085 ACAGGCTATTCACAACTTCGATTAC 59.419 40.000 0.00 0.00 0.00 1.89
3810 4405 5.730550 ACAGGCTATTCACAACTTCGATTA 58.269 37.500 0.00 0.00 0.00 1.75
3811 4406 4.579869 ACAGGCTATTCACAACTTCGATT 58.420 39.130 0.00 0.00 0.00 3.34
3812 4407 4.207891 ACAGGCTATTCACAACTTCGAT 57.792 40.909 0.00 0.00 0.00 3.59
3814 4409 3.997021 AGAACAGGCTATTCACAACTTCG 59.003 43.478 8.43 0.00 0.00 3.79
3815 4410 5.948992 AAGAACAGGCTATTCACAACTTC 57.051 39.130 8.43 0.00 0.00 3.01
3816 4411 5.827797 TCAAAGAACAGGCTATTCACAACTT 59.172 36.000 8.43 0.00 0.00 2.66
3819 4414 6.003326 TGATCAAAGAACAGGCTATTCACAA 58.997 36.000 8.43 0.00 0.00 3.33
3820 4415 5.559770 TGATCAAAGAACAGGCTATTCACA 58.440 37.500 8.43 0.00 0.00 3.58
3821 4416 6.500684 TTGATCAAAGAACAGGCTATTCAC 57.499 37.500 8.43 0.00 0.00 3.18
4022 4819 0.537371 GGCCGGCCTACAAGCATATT 60.537 55.000 38.76 0.00 0.00 1.28
4023 4820 1.073199 GGCCGGCCTACAAGCATAT 59.927 57.895 38.76 0.00 0.00 1.78
4024 4821 2.070039 AGGCCGGCCTACAAGCATA 61.070 57.895 46.67 0.00 46.14 3.14
4025 4822 3.411517 AGGCCGGCCTACAAGCAT 61.412 61.111 46.67 21.15 46.14 3.79
4026 4823 4.408821 CAGGCCGGCCTACAAGCA 62.409 66.667 46.42 0.00 46.28 3.91
4342 5143 2.795231 AGCAGGATCTTTTAGCTGCA 57.205 45.000 17.88 0.00 39.93 4.41
4343 5144 3.535561 TGTAGCAGGATCTTTTAGCTGC 58.464 45.455 10.37 10.37 38.23 5.25
4376 5912 0.239347 GTTCGTGCTGCAGCTTCAAT 59.761 50.000 36.61 0.00 42.66 2.57
4380 5916 2.203195 TGGTTCGTGCTGCAGCTT 60.203 55.556 36.61 0.00 42.66 3.74
4418 5963 5.789643 TTTGGAGAATTGGAACTTCAAGG 57.210 39.130 0.00 0.00 33.87 3.61
4419 5964 5.693555 GCTTTTGGAGAATTGGAACTTCAAG 59.306 40.000 0.00 0.00 33.87 3.02
4420 5965 5.600696 GCTTTTGGAGAATTGGAACTTCAA 58.399 37.500 0.00 0.00 30.87 2.69
4421 5966 4.261572 CGCTTTTGGAGAATTGGAACTTCA 60.262 41.667 0.00 0.00 0.00 3.02
4422 5967 4.023193 TCGCTTTTGGAGAATTGGAACTTC 60.023 41.667 0.00 0.00 0.00 3.01
4423 5968 3.888930 TCGCTTTTGGAGAATTGGAACTT 59.111 39.130 0.00 0.00 0.00 2.66
4424 5969 3.253432 GTCGCTTTTGGAGAATTGGAACT 59.747 43.478 0.00 0.00 0.00 3.01
4448 5993 5.976458 TCTGCATTGTTTCCTTTTTGAAGT 58.024 33.333 0.00 0.00 0.00 3.01
4484 6032 4.415224 ACCTAATATGTAGGATCGGGGT 57.585 45.455 14.32 0.00 38.09 4.95
4485 6033 5.757099 AAACCTAATATGTAGGATCGGGG 57.243 43.478 14.32 0.00 38.09 5.73
4496 6044 6.001449 TCTCCAGGGTGAAAACCTAATATG 57.999 41.667 0.00 0.00 36.32 1.78
4626 6448 1.448540 GCGGCATCAGTAGCACAGT 60.449 57.895 0.00 0.00 0.00 3.55
4634 6456 2.827190 CATGGCAGCGGCATCAGT 60.827 61.111 11.88 0.00 45.69 3.41
4650 6485 1.295792 GCTTGGTGTTTCGTGACTCA 58.704 50.000 0.00 0.00 0.00 3.41
4742 6580 4.697352 CGATTTCCTTGGTGAAGAAGTGAT 59.303 41.667 0.00 0.00 0.00 3.06
4757 6596 3.184541 CACGTCGGTATTTCGATTTCCT 58.815 45.455 0.00 0.00 41.40 3.36
4787 6626 4.377022 GCGAAACATCGTTGTATGTTGACT 60.377 41.667 0.00 0.00 46.72 3.41
4803 6642 1.593209 GAGGGTGTGACGCGAAACA 60.593 57.895 15.93 14.22 36.04 2.83
4861 6704 3.262915 AGATTTCTGGATCGGATGGGATC 59.737 47.826 0.00 0.00 41.67 3.36
4916 6760 5.592104 TTGACGAGTTCCATAATGCTCTA 57.408 39.130 0.00 0.00 0.00 2.43
4925 6769 5.221342 GGATCTAGTCATTGACGAGTTCCAT 60.221 44.000 31.49 18.50 45.17 3.41
4926 6770 4.098044 GGATCTAGTCATTGACGAGTTCCA 59.902 45.833 31.49 15.68 45.17 3.53
4960 6804 0.889186 GATGGTGTTCTGCCGGTTGT 60.889 55.000 1.90 0.00 0.00 3.32
5000 6846 4.082523 CGGTGGATGGCGTGGTCT 62.083 66.667 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.