Multiple sequence alignment - TraesCS2B01G104600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G104600 chr2B 100.000 2531 0 0 1 2531 65090261 65087731 0.000000e+00 4674
1 TraesCS2B01G104600 chr2B 88.053 226 24 2 79 304 65044987 65044765 5.370000e-67 265
2 TraesCS2B01G104600 chr7B 99.036 1971 18 1 561 2531 697603943 697601974 0.000000e+00 3533
3 TraesCS2B01G104600 chr4B 98.985 1970 18 2 563 2531 437234399 437236367 0.000000e+00 3526
4 TraesCS2B01G104600 chr4B 92.857 140 10 0 305 444 11930370 11930231 1.190000e-48 204
5 TraesCS2B01G104600 chr4B 95.312 128 6 0 304 431 76816062 76815935 1.190000e-48 204
6 TraesCS2B01G104600 chr6A 98.934 1970 20 1 562 2531 593775860 593773892 0.000000e+00 3520
7 TraesCS2B01G104600 chr7A 98.883 1969 20 2 563 2531 40032044 40034010 0.000000e+00 3513
8 TraesCS2B01G104600 chr7A 98.782 1970 20 2 562 2531 686635018 686636983 0.000000e+00 3502
9 TraesCS2B01G104600 chr4A 98.833 1971 20 2 563 2531 620586045 620588014 0.000000e+00 3509
10 TraesCS2B01G104600 chr4A 98.783 1972 23 1 560 2531 724630111 724632081 0.000000e+00 3507
11 TraesCS2B01G104600 chr4A 96.063 127 4 1 305 431 722875334 722875459 3.300000e-49 206
12 TraesCS2B01G104600 chr3A 98.883 1969 16 4 563 2531 658743970 658742008 0.000000e+00 3509
13 TraesCS2B01G104600 chr5B 98.781 1969 22 2 563 2531 705811763 705813729 0.000000e+00 3502
14 TraesCS2B01G104600 chr2A 92.373 236 15 3 63 298 42190288 42190056 1.450000e-87 333
15 TraesCS2B01G104600 chr2A 85.973 221 31 0 79 299 42199285 42199065 1.170000e-58 237
16 TraesCS2B01G104600 chr2D 86.722 241 24 5 79 319 37274099 37273867 6.940000e-66 261
17 TraesCS2B01G104600 chr5D 95.620 137 5 1 295 431 439810681 439810816 4.240000e-53 219
18 TraesCS2B01G104600 chrUn 95.385 130 6 0 302 431 17541144 17541273 9.180000e-50 207
19 TraesCS2B01G104600 chrUn 92.701 137 9 1 295 431 350156898 350157033 1.990000e-46 196
20 TraesCS2B01G104600 chr4D 94.697 132 7 0 301 432 614657 614526 3.300000e-49 206
21 TraesCS2B01G104600 chr6B 95.349 129 5 1 304 431 632877612 632877740 1.190000e-48 204
22 TraesCS2B01G104600 chr6D 93.382 136 8 1 297 431 126108253 126108388 1.540000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G104600 chr2B 65087731 65090261 2530 True 4674 4674 100.000 1 2531 1 chr2B.!!$R2 2530
1 TraesCS2B01G104600 chr7B 697601974 697603943 1969 True 3533 3533 99.036 561 2531 1 chr7B.!!$R1 1970
2 TraesCS2B01G104600 chr4B 437234399 437236367 1968 False 3526 3526 98.985 563 2531 1 chr4B.!!$F1 1968
3 TraesCS2B01G104600 chr6A 593773892 593775860 1968 True 3520 3520 98.934 562 2531 1 chr6A.!!$R1 1969
4 TraesCS2B01G104600 chr7A 40032044 40034010 1966 False 3513 3513 98.883 563 2531 1 chr7A.!!$F1 1968
5 TraesCS2B01G104600 chr7A 686635018 686636983 1965 False 3502 3502 98.782 562 2531 1 chr7A.!!$F2 1969
6 TraesCS2B01G104600 chr4A 620586045 620588014 1969 False 3509 3509 98.833 563 2531 1 chr4A.!!$F1 1968
7 TraesCS2B01G104600 chr4A 724630111 724632081 1970 False 3507 3507 98.783 560 2531 1 chr4A.!!$F3 1971
8 TraesCS2B01G104600 chr3A 658742008 658743970 1962 True 3509 3509 98.883 563 2531 1 chr3A.!!$R1 1968
9 TraesCS2B01G104600 chr5B 705811763 705813729 1966 False 3502 3502 98.781 563 2531 1 chr5B.!!$F1 1968

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 322 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.0 0.0 0.0 0.0 3.28 F
432 433 0.410663 TTTGGGACGGAGGGAGTAGA 59.589 55.0 0.0 0.0 0.0 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1465 1466 2.491693 CACAACCATAAAATGCTCCCGT 59.508 45.455 0.00 0.0 0.0 5.28 R
2393 2402 2.260434 CCGAAGAAGAACCCGCGA 59.740 61.111 8.23 0.0 0.0 5.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.980233 GCCCTATCATGGCGTGCC 60.980 66.667 3.30 3.30 39.48 5.01
19 20 2.666190 CCCTATCATGGCGTGCCG 60.666 66.667 6.37 0.00 39.42 5.69
20 21 2.666190 CCTATCATGGCGTGCCGG 60.666 66.667 6.37 0.00 39.42 6.13
21 22 2.421314 CTATCATGGCGTGCCGGA 59.579 61.111 5.05 6.95 39.42 5.14
22 23 1.956170 CTATCATGGCGTGCCGGAC 60.956 63.158 5.05 0.00 39.42 4.79
23 24 2.642996 CTATCATGGCGTGCCGGACA 62.643 60.000 5.05 0.00 39.42 4.02
24 25 2.642996 TATCATGGCGTGCCGGACAG 62.643 60.000 5.05 0.00 39.42 3.51
30 31 4.988598 CGTGCCGGACAGCAACCT 62.989 66.667 5.05 0.00 46.19 3.50
31 32 2.594592 GTGCCGGACAGCAACCTT 60.595 61.111 5.05 0.00 46.19 3.50
32 33 2.281484 TGCCGGACAGCAACCTTC 60.281 61.111 5.05 0.00 40.56 3.46
33 34 2.032681 GCCGGACAGCAACCTTCT 59.967 61.111 5.05 0.00 0.00 2.85
34 35 1.600916 GCCGGACAGCAACCTTCTT 60.601 57.895 5.05 0.00 0.00 2.52
35 36 1.578206 GCCGGACAGCAACCTTCTTC 61.578 60.000 5.05 0.00 0.00 2.87
36 37 0.250295 CCGGACAGCAACCTTCTTCA 60.250 55.000 0.00 0.00 0.00 3.02
37 38 1.593196 CGGACAGCAACCTTCTTCAA 58.407 50.000 0.00 0.00 0.00 2.69
38 39 2.154462 CGGACAGCAACCTTCTTCAAT 58.846 47.619 0.00 0.00 0.00 2.57
39 40 2.554032 CGGACAGCAACCTTCTTCAATT 59.446 45.455 0.00 0.00 0.00 2.32
40 41 3.004734 CGGACAGCAACCTTCTTCAATTT 59.995 43.478 0.00 0.00 0.00 1.82
41 42 4.215399 CGGACAGCAACCTTCTTCAATTTA 59.785 41.667 0.00 0.00 0.00 1.40
42 43 5.617751 CGGACAGCAACCTTCTTCAATTTAG 60.618 44.000 0.00 0.00 0.00 1.85
43 44 5.473504 GGACAGCAACCTTCTTCAATTTAGA 59.526 40.000 0.00 0.00 0.00 2.10
44 45 6.016276 GGACAGCAACCTTCTTCAATTTAGAA 60.016 38.462 0.00 1.09 0.00 2.10
45 46 6.974965 ACAGCAACCTTCTTCAATTTAGAAG 58.025 36.000 15.56 15.56 45.23 2.85
54 55 7.448748 TTCTTCAATTTAGAAGGTGTTAGGC 57.551 36.000 5.87 0.00 44.01 3.93
55 56 6.539173 TCTTCAATTTAGAAGGTGTTAGGCA 58.461 36.000 5.87 0.00 44.01 4.75
56 57 7.175104 TCTTCAATTTAGAAGGTGTTAGGCAT 58.825 34.615 5.87 0.00 44.01 4.40
57 58 6.757897 TCAATTTAGAAGGTGTTAGGCATG 57.242 37.500 0.00 0.00 0.00 4.06
58 59 6.480763 TCAATTTAGAAGGTGTTAGGCATGA 58.519 36.000 0.00 0.00 0.00 3.07
59 60 6.599244 TCAATTTAGAAGGTGTTAGGCATGAG 59.401 38.462 0.00 0.00 0.00 2.90
60 61 4.487714 TTAGAAGGTGTTAGGCATGAGG 57.512 45.455 0.00 0.00 0.00 3.86
61 62 1.065126 AGAAGGTGTTAGGCATGAGGC 60.065 52.381 0.00 0.00 43.74 4.70
72 73 2.189594 GCATGAGGCTGCCATATACA 57.810 50.000 22.65 12.44 40.25 2.29
73 74 1.808945 GCATGAGGCTGCCATATACAC 59.191 52.381 22.65 0.00 40.25 2.90
74 75 2.811504 GCATGAGGCTGCCATATACACA 60.812 50.000 22.65 9.04 40.25 3.72
75 76 3.682696 CATGAGGCTGCCATATACACAT 58.317 45.455 22.65 10.80 0.00 3.21
76 77 3.130280 TGAGGCTGCCATATACACATG 57.870 47.619 22.65 0.00 0.00 3.21
77 78 2.705127 TGAGGCTGCCATATACACATGA 59.295 45.455 22.65 0.00 0.00 3.07
78 79 3.328637 TGAGGCTGCCATATACACATGAT 59.671 43.478 22.65 0.00 0.00 2.45
79 80 3.682696 AGGCTGCCATATACACATGATG 58.317 45.455 22.65 0.00 0.00 3.07
80 81 3.328637 AGGCTGCCATATACACATGATGA 59.671 43.478 22.65 0.00 0.00 2.92
81 82 4.018688 AGGCTGCCATATACACATGATGAT 60.019 41.667 22.65 0.00 0.00 2.45
82 83 5.190330 AGGCTGCCATATACACATGATGATA 59.810 40.000 22.65 0.00 0.00 2.15
83 84 5.882000 GGCTGCCATATACACATGATGATAA 59.118 40.000 15.17 0.00 0.00 1.75
84 85 6.183360 GGCTGCCATATACACATGATGATAAC 60.183 42.308 15.17 0.00 0.00 1.89
85 86 6.596888 GCTGCCATATACACATGATGATAACT 59.403 38.462 0.00 0.00 0.00 2.24
86 87 7.765819 GCTGCCATATACACATGATGATAACTA 59.234 37.037 0.00 0.00 0.00 2.24
87 88 9.828039 CTGCCATATACACATGATGATAACTAT 57.172 33.333 0.00 0.00 0.00 2.12
88 89 9.603921 TGCCATATACACATGATGATAACTATG 57.396 33.333 0.00 0.51 0.00 2.23
89 90 9.605275 GCCATATACACATGATGATAACTATGT 57.395 33.333 0.00 0.00 34.31 2.29
98 99 9.935241 ACATGATGATAACTATGTCTAATGACC 57.065 33.333 0.00 0.00 42.28 4.02
99 100 9.080915 CATGATGATAACTATGTCTAATGACCG 57.919 37.037 0.00 0.00 42.28 4.79
100 101 8.178313 TGATGATAACTATGTCTAATGACCGT 57.822 34.615 0.00 0.00 42.28 4.83
101 102 9.292195 TGATGATAACTATGTCTAATGACCGTA 57.708 33.333 0.00 0.00 42.28 4.02
113 114 9.524106 TGTCTAATGACCGTATATTGTTACAAG 57.476 33.333 3.63 0.00 42.28 3.16
114 115 8.975439 GTCTAATGACCGTATATTGTTACAAGG 58.025 37.037 3.63 1.44 37.24 3.61
115 116 8.916062 TCTAATGACCGTATATTGTTACAAGGA 58.084 33.333 3.63 0.00 0.00 3.36
116 117 9.193133 CTAATGACCGTATATTGTTACAAGGAG 57.807 37.037 3.63 0.00 0.00 3.69
117 118 5.909477 TGACCGTATATTGTTACAAGGAGG 58.091 41.667 3.63 5.34 0.00 4.30
118 119 5.657745 TGACCGTATATTGTTACAAGGAGGA 59.342 40.000 3.63 0.00 0.00 3.71
119 120 6.325545 TGACCGTATATTGTTACAAGGAGGAT 59.674 38.462 3.63 0.00 0.00 3.24
120 121 6.756221 ACCGTATATTGTTACAAGGAGGATC 58.244 40.000 3.63 0.00 0.00 3.36
121 122 6.553852 ACCGTATATTGTTACAAGGAGGATCT 59.446 38.462 3.63 0.00 33.73 2.75
122 123 7.070821 ACCGTATATTGTTACAAGGAGGATCTT 59.929 37.037 3.63 0.00 33.73 2.40
123 124 8.582437 CCGTATATTGTTACAAGGAGGATCTTA 58.418 37.037 3.63 0.00 33.73 2.10
124 125 9.408069 CGTATATTGTTACAAGGAGGATCTTAC 57.592 37.037 3.63 0.00 33.73 2.34
128 129 8.738645 ATTGTTACAAGGAGGATCTTACAATC 57.261 34.615 3.63 0.00 32.46 2.67
129 130 7.496346 TGTTACAAGGAGGATCTTACAATCT 57.504 36.000 0.00 0.00 33.73 2.40
130 131 7.556844 TGTTACAAGGAGGATCTTACAATCTC 58.443 38.462 0.00 0.00 33.73 2.75
131 132 5.269505 ACAAGGAGGATCTTACAATCTCG 57.730 43.478 0.00 0.00 33.73 4.04
132 133 4.712337 ACAAGGAGGATCTTACAATCTCGT 59.288 41.667 0.00 0.00 33.73 4.18
133 134 4.927978 AGGAGGATCTTACAATCTCGTG 57.072 45.455 0.00 0.00 33.73 4.35
134 135 4.282496 AGGAGGATCTTACAATCTCGTGT 58.718 43.478 0.00 0.00 33.73 4.49
135 136 4.098654 AGGAGGATCTTACAATCTCGTGTG 59.901 45.833 0.00 0.00 33.73 3.82
136 137 3.786635 AGGATCTTACAATCTCGTGTGC 58.213 45.455 0.00 0.00 32.75 4.57
137 138 3.449018 AGGATCTTACAATCTCGTGTGCT 59.551 43.478 0.00 0.00 32.75 4.40
138 139 4.645136 AGGATCTTACAATCTCGTGTGCTA 59.355 41.667 0.00 0.00 32.75 3.49
139 140 5.303078 AGGATCTTACAATCTCGTGTGCTAT 59.697 40.000 0.00 0.00 32.75 2.97
140 141 5.403766 GGATCTTACAATCTCGTGTGCTATG 59.596 44.000 0.00 0.00 32.75 2.23
141 142 5.576447 TCTTACAATCTCGTGTGCTATGA 57.424 39.130 0.00 0.00 32.75 2.15
142 143 6.149129 TCTTACAATCTCGTGTGCTATGAT 57.851 37.500 0.00 0.00 32.75 2.45
143 144 7.272037 TCTTACAATCTCGTGTGCTATGATA 57.728 36.000 0.00 0.00 32.75 2.15
144 145 7.363431 TCTTACAATCTCGTGTGCTATGATAG 58.637 38.462 0.00 0.00 32.75 2.08
158 159 6.419980 GCTATGATAGCCAAAGCATAGAAG 57.580 41.667 13.37 0.00 45.95 2.85
159 160 5.353678 GCTATGATAGCCAAAGCATAGAAGG 59.646 44.000 13.37 0.00 45.95 3.46
160 161 4.778213 TGATAGCCAAAGCATAGAAGGT 57.222 40.909 0.00 0.00 43.56 3.50
161 162 4.454678 TGATAGCCAAAGCATAGAAGGTG 58.545 43.478 0.00 0.00 43.56 4.00
162 163 2.887151 AGCCAAAGCATAGAAGGTGT 57.113 45.000 0.00 0.00 43.56 4.16
163 164 3.160679 AGCCAAAGCATAGAAGGTGTT 57.839 42.857 0.00 0.00 43.56 3.32
164 165 4.301072 AGCCAAAGCATAGAAGGTGTTA 57.699 40.909 0.00 0.00 43.56 2.41
165 166 4.265073 AGCCAAAGCATAGAAGGTGTTAG 58.735 43.478 0.00 0.00 43.56 2.34
166 167 3.378427 GCCAAAGCATAGAAGGTGTTAGG 59.622 47.826 0.00 0.00 39.53 2.69
167 168 3.378427 CCAAAGCATAGAAGGTGTTAGGC 59.622 47.826 0.00 0.00 0.00 3.93
168 169 4.009675 CAAAGCATAGAAGGTGTTAGGCA 58.990 43.478 0.00 0.00 0.00 4.75
169 170 4.510167 AAGCATAGAAGGTGTTAGGCAT 57.490 40.909 0.00 0.00 0.00 4.40
170 171 3.813443 AGCATAGAAGGTGTTAGGCATG 58.187 45.455 0.00 0.00 0.00 4.06
171 172 3.455910 AGCATAGAAGGTGTTAGGCATGA 59.544 43.478 0.00 0.00 0.00 3.07
172 173 3.812053 GCATAGAAGGTGTTAGGCATGAG 59.188 47.826 0.00 0.00 0.00 2.90
173 174 4.384056 CATAGAAGGTGTTAGGCATGAGG 58.616 47.826 0.00 0.00 0.00 3.86
174 175 1.065126 AGAAGGTGTTAGGCATGAGGC 60.065 52.381 0.00 0.00 43.74 4.70
186 187 2.265589 CATGAGGCTACCATGCATGA 57.734 50.000 28.31 8.14 38.82 3.07
187 188 1.878088 CATGAGGCTACCATGCATGAC 59.122 52.381 28.31 13.44 38.82 3.06
188 189 1.206878 TGAGGCTACCATGCATGACT 58.793 50.000 28.31 16.14 34.04 3.41
189 190 1.561076 TGAGGCTACCATGCATGACTT 59.439 47.619 28.31 13.69 34.04 3.01
190 191 1.945394 GAGGCTACCATGCATGACTTG 59.055 52.381 28.31 13.38 34.04 3.16
191 192 1.561076 AGGCTACCATGCATGACTTGA 59.439 47.619 28.31 6.98 34.04 3.02
192 193 1.672881 GGCTACCATGCATGACTTGAC 59.327 52.381 28.31 12.89 34.04 3.18
193 194 2.358957 GCTACCATGCATGACTTGACA 58.641 47.619 28.31 4.31 0.00 3.58
194 195 2.947652 GCTACCATGCATGACTTGACAT 59.052 45.455 28.31 5.29 0.00 3.06
195 196 4.129380 GCTACCATGCATGACTTGACATA 58.871 43.478 28.31 6.10 0.00 2.29
196 197 4.758674 GCTACCATGCATGACTTGACATAT 59.241 41.667 28.31 2.86 0.00 1.78
197 198 5.106791 GCTACCATGCATGACTTGACATATC 60.107 44.000 28.31 0.88 0.00 1.63
198 199 4.784177 ACCATGCATGACTTGACATATCA 58.216 39.130 28.31 0.00 0.00 2.15
199 200 5.382616 ACCATGCATGACTTGACATATCAT 58.617 37.500 28.31 0.00 33.85 2.45
200 201 5.472478 ACCATGCATGACTTGACATATCATC 59.528 40.000 28.31 0.00 33.85 2.92
201 202 5.472137 CCATGCATGACTTGACATATCATCA 59.528 40.000 28.31 3.10 33.85 3.07
202 203 6.151144 CCATGCATGACTTGACATATCATCAT 59.849 38.462 28.31 4.73 35.73 2.45
203 204 6.796705 TGCATGACTTGACATATCATCATC 57.203 37.500 0.00 0.00 33.94 2.92
204 205 5.704053 TGCATGACTTGACATATCATCATCC 59.296 40.000 0.00 0.00 33.94 3.51
205 206 5.163884 GCATGACTTGACATATCATCATCCG 60.164 44.000 0.00 0.00 33.94 4.18
206 207 4.886579 TGACTTGACATATCATCATCCGG 58.113 43.478 0.00 0.00 33.85 5.14
207 208 4.588528 TGACTTGACATATCATCATCCGGA 59.411 41.667 6.61 6.61 33.85 5.14
208 209 5.070313 TGACTTGACATATCATCATCCGGAA 59.930 40.000 9.01 0.00 33.85 4.30
209 210 6.119240 ACTTGACATATCATCATCCGGAAT 57.881 37.500 9.01 0.00 33.85 3.01
210 211 6.169094 ACTTGACATATCATCATCCGGAATC 58.831 40.000 9.01 0.00 33.85 2.52
211 212 5.743636 TGACATATCATCATCCGGAATCA 57.256 39.130 9.01 0.00 0.00 2.57
212 213 6.112927 TGACATATCATCATCCGGAATCAA 57.887 37.500 9.01 0.00 0.00 2.57
213 214 6.168389 TGACATATCATCATCCGGAATCAAG 58.832 40.000 9.01 0.00 0.00 3.02
214 215 4.940046 ACATATCATCATCCGGAATCAAGC 59.060 41.667 9.01 0.00 0.00 4.01
215 216 3.497103 ATCATCATCCGGAATCAAGCA 57.503 42.857 9.01 0.00 0.00 3.91
216 217 2.564771 TCATCATCCGGAATCAAGCAC 58.435 47.619 9.01 0.00 0.00 4.40
217 218 2.093021 TCATCATCCGGAATCAAGCACA 60.093 45.455 9.01 0.00 0.00 4.57
218 219 1.737838 TCATCCGGAATCAAGCACAC 58.262 50.000 9.01 0.00 0.00 3.82
219 220 1.003003 TCATCCGGAATCAAGCACACA 59.997 47.619 9.01 0.00 0.00 3.72
220 221 2.019249 CATCCGGAATCAAGCACACAT 58.981 47.619 9.01 0.00 0.00 3.21
221 222 1.452110 TCCGGAATCAAGCACACATG 58.548 50.000 0.00 0.00 0.00 3.21
222 223 1.167851 CCGGAATCAAGCACACATGT 58.832 50.000 0.00 0.00 0.00 3.21
237 238 4.787551 ACACATGTGAAGTACCCAAAAGA 58.212 39.130 31.94 0.00 0.00 2.52
238 239 5.197451 ACACATGTGAAGTACCCAAAAGAA 58.803 37.500 31.94 0.00 0.00 2.52
239 240 5.654650 ACACATGTGAAGTACCCAAAAGAAA 59.345 36.000 31.94 0.00 0.00 2.52
240 241 6.183360 ACACATGTGAAGTACCCAAAAGAAAG 60.183 38.462 31.94 0.00 0.00 2.62
241 242 5.891551 ACATGTGAAGTACCCAAAAGAAAGT 59.108 36.000 0.00 0.00 0.00 2.66
242 243 5.828299 TGTGAAGTACCCAAAAGAAAGTG 57.172 39.130 0.00 0.00 0.00 3.16
243 244 5.258051 TGTGAAGTACCCAAAAGAAAGTGT 58.742 37.500 0.00 0.00 0.00 3.55
244 245 6.416415 TGTGAAGTACCCAAAAGAAAGTGTA 58.584 36.000 0.00 0.00 0.00 2.90
245 246 7.057894 TGTGAAGTACCCAAAAGAAAGTGTAT 58.942 34.615 0.00 0.00 0.00 2.29
246 247 8.212312 TGTGAAGTACCCAAAAGAAAGTGTATA 58.788 33.333 0.00 0.00 0.00 1.47
247 248 8.501580 GTGAAGTACCCAAAAGAAAGTGTATAC 58.498 37.037 0.00 0.00 0.00 1.47
248 249 8.434392 TGAAGTACCCAAAAGAAAGTGTATACT 58.566 33.333 4.17 0.00 39.32 2.12
249 250 8.617290 AAGTACCCAAAAGAAAGTGTATACTG 57.383 34.615 4.17 0.00 37.19 2.74
250 251 5.959618 ACCCAAAAGAAAGTGTATACTGC 57.040 39.130 4.17 0.00 37.19 4.40
251 252 5.631119 ACCCAAAAGAAAGTGTATACTGCT 58.369 37.500 4.17 0.00 37.19 4.24
252 253 6.775708 ACCCAAAAGAAAGTGTATACTGCTA 58.224 36.000 4.17 0.00 37.19 3.49
253 254 6.653740 ACCCAAAAGAAAGTGTATACTGCTAC 59.346 38.462 4.17 0.00 37.19 3.58
254 255 6.183360 CCCAAAAGAAAGTGTATACTGCTACG 60.183 42.308 4.17 0.00 37.19 3.51
255 256 6.588756 CCAAAAGAAAGTGTATACTGCTACGA 59.411 38.462 4.17 0.00 37.19 3.43
256 257 7.277981 CCAAAAGAAAGTGTATACTGCTACGAT 59.722 37.037 4.17 0.00 37.19 3.73
257 258 8.656849 CAAAAGAAAGTGTATACTGCTACGATT 58.343 33.333 4.17 0.00 37.19 3.34
258 259 8.773404 AAAGAAAGTGTATACTGCTACGATTT 57.227 30.769 4.17 1.31 37.19 2.17
259 260 9.865321 AAAGAAAGTGTATACTGCTACGATTTA 57.135 29.630 4.17 0.00 37.19 1.40
260 261 9.865321 AAGAAAGTGTATACTGCTACGATTTAA 57.135 29.630 4.17 0.00 37.19 1.52
263 264 8.813643 AAGTGTATACTGCTACGATTTAATCC 57.186 34.615 4.17 0.00 37.19 3.01
264 265 7.376615 AGTGTATACTGCTACGATTTAATCCC 58.623 38.462 4.17 0.00 35.34 3.85
265 266 7.232941 AGTGTATACTGCTACGATTTAATCCCT 59.767 37.037 4.17 0.00 35.34 4.20
266 267 7.871463 GTGTATACTGCTACGATTTAATCCCTT 59.129 37.037 4.17 0.00 0.00 3.95
267 268 9.081204 TGTATACTGCTACGATTTAATCCCTTA 57.919 33.333 4.17 0.00 0.00 2.69
268 269 9.351570 GTATACTGCTACGATTTAATCCCTTAC 57.648 37.037 0.00 0.00 0.00 2.34
269 270 5.287226 ACTGCTACGATTTAATCCCTTACG 58.713 41.667 0.00 0.00 0.00 3.18
270 271 5.163478 ACTGCTACGATTTAATCCCTTACGT 60.163 40.000 0.00 0.00 36.52 3.57
271 272 5.663456 TGCTACGATTTAATCCCTTACGTT 58.337 37.500 0.00 0.00 34.52 3.99
272 273 5.750067 TGCTACGATTTAATCCCTTACGTTC 59.250 40.000 0.00 0.00 34.52 3.95
273 274 5.176406 GCTACGATTTAATCCCTTACGTTCC 59.824 44.000 0.00 0.00 34.52 3.62
274 275 5.088680 ACGATTTAATCCCTTACGTTCCA 57.911 39.130 0.00 0.00 0.00 3.53
275 276 5.490159 ACGATTTAATCCCTTACGTTCCAA 58.510 37.500 0.00 0.00 0.00 3.53
276 277 5.583457 ACGATTTAATCCCTTACGTTCCAAG 59.417 40.000 0.00 0.00 0.00 3.61
277 278 5.503520 CGATTTAATCCCTTACGTTCCAAGC 60.504 44.000 0.00 0.00 0.00 4.01
278 279 4.563140 TTAATCCCTTACGTTCCAAGCT 57.437 40.909 0.00 0.00 0.00 3.74
279 280 3.434940 AATCCCTTACGTTCCAAGCTT 57.565 42.857 0.00 0.00 0.00 3.74
280 281 2.178912 TCCCTTACGTTCCAAGCTTG 57.821 50.000 19.93 19.93 0.00 4.01
290 291 2.662309 CCAAGCTTGGTGCCAATCT 58.338 52.632 33.46 2.80 43.43 2.40
291 292 1.838112 CCAAGCTTGGTGCCAATCTA 58.162 50.000 33.46 0.00 43.43 1.98
292 293 1.747355 CCAAGCTTGGTGCCAATCTAG 59.253 52.381 33.46 6.91 43.43 2.43
293 294 2.440409 CAAGCTTGGTGCCAATCTAGT 58.560 47.619 19.14 0.00 44.23 2.57
294 295 2.821969 CAAGCTTGGTGCCAATCTAGTT 59.178 45.455 19.14 0.00 44.23 2.24
295 296 4.009675 CAAGCTTGGTGCCAATCTAGTTA 58.990 43.478 19.14 0.00 44.23 2.24
296 297 3.610911 AGCTTGGTGCCAATCTAGTTAC 58.389 45.455 5.61 0.00 44.23 2.50
297 298 3.264450 AGCTTGGTGCCAATCTAGTTACT 59.736 43.478 5.61 0.00 44.23 2.24
298 299 4.010349 GCTTGGTGCCAATCTAGTTACTT 58.990 43.478 3.91 0.00 35.20 2.24
299 300 5.045869 AGCTTGGTGCCAATCTAGTTACTTA 60.046 40.000 5.61 0.00 44.23 2.24
300 301 5.823045 GCTTGGTGCCAATCTAGTTACTTAT 59.177 40.000 3.91 0.00 35.20 1.73
301 302 6.318900 GCTTGGTGCCAATCTAGTTACTTATT 59.681 38.462 3.91 0.00 35.20 1.40
302 303 7.497909 GCTTGGTGCCAATCTAGTTACTTATTA 59.502 37.037 3.91 0.00 35.20 0.98
303 304 8.958119 TTGGTGCCAATCTAGTTACTTATTAG 57.042 34.615 0.00 0.00 0.00 1.73
304 305 8.086143 TGGTGCCAATCTAGTTACTTATTAGT 57.914 34.615 0.00 0.00 38.44 2.24
305 306 9.204337 TGGTGCCAATCTAGTTACTTATTAGTA 57.796 33.333 0.00 0.00 35.78 1.82
306 307 9.473640 GGTGCCAATCTAGTTACTTATTAGTAC 57.526 37.037 0.00 0.00 36.61 2.73
309 310 9.911138 GCCAATCTAGTTACTTATTAGTACTCC 57.089 37.037 0.00 0.00 36.61 3.85
314 315 8.153550 TCTAGTTACTTATTAGTACTCCCTCCG 58.846 40.741 0.00 0.00 36.61 4.63
315 316 6.667661 AGTTACTTATTAGTACTCCCTCCGT 58.332 40.000 0.00 0.00 36.61 4.69
316 317 6.770303 AGTTACTTATTAGTACTCCCTCCGTC 59.230 42.308 0.00 0.00 36.61 4.79
317 318 4.468713 ACTTATTAGTACTCCCTCCGTCC 58.531 47.826 0.00 0.00 31.21 4.79
318 319 2.378378 ATTAGTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
319 320 1.002069 TTAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
320 321 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
321 322 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
322 323 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
323 324 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
324 325 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
325 326 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
326 327 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
327 328 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
328 329 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
329 330 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
330 331 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
331 332 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
332 333 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
333 334 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
334 335 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
335 336 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
336 337 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
337 338 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
338 339 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
339 340 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
340 341 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
341 342 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
342 343 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
374 375 9.190317 TGAATGTATCTAGTCACATCTTAGTGT 57.810 33.333 10.89 0.00 40.37 3.55
376 377 9.809096 AATGTATCTAGTCACATCTTAGTGTTG 57.191 33.333 10.89 0.00 40.37 3.33
377 378 7.772166 TGTATCTAGTCACATCTTAGTGTTGG 58.228 38.462 0.00 0.00 40.37 3.77
378 379 7.614192 TGTATCTAGTCACATCTTAGTGTTGGA 59.386 37.037 0.00 0.00 40.37 3.53
379 380 7.667575 ATCTAGTCACATCTTAGTGTTGGAT 57.332 36.000 0.00 0.00 40.37 3.41
380 381 8.768501 ATCTAGTCACATCTTAGTGTTGGATA 57.231 34.615 0.00 0.00 40.37 2.59
381 382 7.997482 TCTAGTCACATCTTAGTGTTGGATAC 58.003 38.462 0.00 0.00 40.37 2.24
382 383 6.605471 AGTCACATCTTAGTGTTGGATACA 57.395 37.500 0.00 0.00 42.11 2.29
383 384 7.187824 AGTCACATCTTAGTGTTGGATACAT 57.812 36.000 0.00 0.00 42.02 2.29
384 385 7.624549 AGTCACATCTTAGTGTTGGATACATT 58.375 34.615 0.00 0.00 42.02 2.71
385 386 7.766278 AGTCACATCTTAGTGTTGGATACATTC 59.234 37.037 0.00 0.00 42.02 2.67
386 387 6.756542 TCACATCTTAGTGTTGGATACATTCG 59.243 38.462 0.00 0.00 42.02 3.34
387 388 7.578763 TCACATCTTAGTGTTGGATACATTCGT 60.579 37.037 0.00 0.00 42.02 3.85
421 422 8.587952 AAATTTAAGACAAGAATTTTGGGACG 57.412 30.769 0.00 0.00 31.00 4.79
422 423 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
423 424 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
424 425 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
425 426 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
426 427 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
427 428 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
428 429 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
429 430 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
430 431 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
431 432 1.272807 TTTTGGGACGGAGGGAGTAG 58.727 55.000 0.00 0.00 0.00 2.57
432 433 0.410663 TTTGGGACGGAGGGAGTAGA 59.589 55.000 0.00 0.00 0.00 2.59
433 434 0.410663 TTGGGACGGAGGGAGTAGAA 59.589 55.000 0.00 0.00 0.00 2.10
434 435 0.410663 TGGGACGGAGGGAGTAGAAA 59.589 55.000 0.00 0.00 0.00 2.52
435 436 1.203212 TGGGACGGAGGGAGTAGAAAA 60.203 52.381 0.00 0.00 0.00 2.29
436 437 1.206610 GGGACGGAGGGAGTAGAAAAC 59.793 57.143 0.00 0.00 0.00 2.43
437 438 1.897802 GGACGGAGGGAGTAGAAAACA 59.102 52.381 0.00 0.00 0.00 2.83
438 439 2.301009 GGACGGAGGGAGTAGAAAACAA 59.699 50.000 0.00 0.00 0.00 2.83
439 440 3.055312 GGACGGAGGGAGTAGAAAACAAT 60.055 47.826 0.00 0.00 0.00 2.71
440 441 3.933332 GACGGAGGGAGTAGAAAACAATG 59.067 47.826 0.00 0.00 0.00 2.82
441 442 2.678336 CGGAGGGAGTAGAAAACAATGC 59.322 50.000 0.00 0.00 0.00 3.56
442 443 3.686016 GGAGGGAGTAGAAAACAATGCA 58.314 45.455 0.00 0.00 0.00 3.96
443 444 3.440522 GGAGGGAGTAGAAAACAATGCAC 59.559 47.826 0.00 0.00 0.00 4.57
444 445 4.072131 GAGGGAGTAGAAAACAATGCACA 58.928 43.478 0.00 0.00 0.00 4.57
445 446 4.074970 AGGGAGTAGAAAACAATGCACAG 58.925 43.478 0.00 0.00 0.00 3.66
446 447 3.821033 GGGAGTAGAAAACAATGCACAGT 59.179 43.478 0.00 0.00 0.00 3.55
447 448 4.278419 GGGAGTAGAAAACAATGCACAGTT 59.722 41.667 0.00 0.00 0.00 3.16
448 449 5.215160 GGAGTAGAAAACAATGCACAGTTG 58.785 41.667 6.39 1.86 0.00 3.16
459 460 3.548201 CACAGTTGCATTTGCGTGA 57.452 47.368 0.00 0.00 45.83 4.35
460 461 1.122849 CACAGTTGCATTTGCGTGAC 58.877 50.000 0.00 2.10 45.83 3.67
461 462 0.737804 ACAGTTGCATTTGCGTGACA 59.262 45.000 0.00 0.00 45.83 3.58
462 463 1.133982 ACAGTTGCATTTGCGTGACAA 59.866 42.857 0.00 0.00 45.83 3.18
476 477 7.401484 TTGCGTGACAAAGAAATAATTTTCC 57.599 32.000 0.00 0.00 36.61 3.13
477 478 6.507900 TGCGTGACAAAGAAATAATTTTCCA 58.492 32.000 0.00 0.00 41.86 3.53
478 479 6.980978 TGCGTGACAAAGAAATAATTTTCCAA 59.019 30.769 0.00 0.00 41.86 3.53
479 480 7.168972 TGCGTGACAAAGAAATAATTTTCCAAG 59.831 33.333 0.00 0.00 41.86 3.61
480 481 7.169140 GCGTGACAAAGAAATAATTTTCCAAGT 59.831 33.333 0.00 0.00 41.86 3.16
481 482 8.479280 CGTGACAAAGAAATAATTTTCCAAGTG 58.521 33.333 0.00 0.00 41.86 3.16
482 483 8.275632 GTGACAAAGAAATAATTTTCCAAGTGC 58.724 33.333 0.00 0.00 41.86 4.40
483 484 8.203485 TGACAAAGAAATAATTTTCCAAGTGCT 58.797 29.630 0.00 0.00 41.86 4.40
484 485 9.691362 GACAAAGAAATAATTTTCCAAGTGCTA 57.309 29.630 0.00 0.00 41.86 3.49
488 489 9.657419 AAGAAATAATTTTCCAAGTGCTAATGG 57.343 29.630 0.00 0.00 41.86 3.16
489 490 8.815912 AGAAATAATTTTCCAAGTGCTAATGGT 58.184 29.630 2.85 0.00 41.86 3.55
490 491 8.776376 AAATAATTTTCCAAGTGCTAATGGTG 57.224 30.769 2.85 0.00 37.94 4.17
491 492 3.658757 TTTTCCAAGTGCTAATGGTGC 57.341 42.857 2.85 0.00 37.94 5.01
492 493 2.284754 TTCCAAGTGCTAATGGTGCA 57.715 45.000 0.00 0.00 37.94 4.57
493 494 2.512692 TCCAAGTGCTAATGGTGCAT 57.487 45.000 0.00 0.00 42.69 3.96
494 495 2.368439 TCCAAGTGCTAATGGTGCATC 58.632 47.619 0.00 0.00 42.69 3.91
495 496 2.093890 CCAAGTGCTAATGGTGCATCA 58.906 47.619 0.00 0.00 42.69 3.07
496 497 2.159338 CCAAGTGCTAATGGTGCATCAC 60.159 50.000 0.00 0.00 42.69 3.06
497 498 2.751259 CAAGTGCTAATGGTGCATCACT 59.249 45.455 0.00 0.00 42.69 3.41
498 499 3.077484 AGTGCTAATGGTGCATCACTT 57.923 42.857 0.00 0.54 42.69 3.16
499 500 3.424703 AGTGCTAATGGTGCATCACTTT 58.575 40.909 0.00 0.00 42.69 2.66
500 501 3.192001 AGTGCTAATGGTGCATCACTTTG 59.808 43.478 0.00 0.69 42.69 2.77
501 502 3.057315 GTGCTAATGGTGCATCACTTTGT 60.057 43.478 0.00 0.00 42.69 2.83
502 503 3.057386 TGCTAATGGTGCATCACTTTGTG 60.057 43.478 0.00 0.00 35.31 3.33
503 504 3.057315 GCTAATGGTGCATCACTTTGTGT 60.057 43.478 0.00 0.00 34.79 3.72
504 505 4.559300 GCTAATGGTGCATCACTTTGTGTT 60.559 41.667 0.00 0.00 34.79 3.32
505 506 2.867287 TGGTGCATCACTTTGTGTTG 57.133 45.000 0.00 4.86 36.62 3.33
506 507 2.098614 TGGTGCATCACTTTGTGTTGT 58.901 42.857 0.00 0.00 36.14 3.32
507 508 3.282885 TGGTGCATCACTTTGTGTTGTA 58.717 40.909 0.00 3.84 36.14 2.41
508 509 3.888323 TGGTGCATCACTTTGTGTTGTAT 59.112 39.130 0.00 0.00 36.14 2.29
509 510 5.066593 TGGTGCATCACTTTGTGTTGTATA 58.933 37.500 0.00 0.00 36.14 1.47
510 511 5.709631 TGGTGCATCACTTTGTGTTGTATAT 59.290 36.000 0.00 0.00 36.14 0.86
511 512 6.208402 TGGTGCATCACTTTGTGTTGTATATT 59.792 34.615 0.00 0.00 36.14 1.28
512 513 7.090173 GGTGCATCACTTTGTGTTGTATATTT 58.910 34.615 0.00 0.00 36.14 1.40
513 514 7.062138 GGTGCATCACTTTGTGTTGTATATTTG 59.938 37.037 0.00 0.00 36.14 2.32
514 515 7.594758 GTGCATCACTTTGTGTTGTATATTTGT 59.405 33.333 0.00 0.00 36.14 2.83
515 516 8.140628 TGCATCACTTTGTGTTGTATATTTGTT 58.859 29.630 9.54 0.00 36.14 2.83
516 517 8.977505 GCATCACTTTGTGTTGTATATTTGTTT 58.022 29.630 9.54 0.00 36.14 2.83
544 545 8.934507 TTTTCATTTGTTTCGGTAAAAGATGT 57.065 26.923 0.00 0.00 0.00 3.06
545 546 8.934507 TTTCATTTGTTTCGGTAAAAGATGTT 57.065 26.923 0.00 0.00 0.00 2.71
546 547 8.568732 TTCATTTGTTTCGGTAAAAGATGTTC 57.431 30.769 0.00 0.00 0.00 3.18
547 548 7.936584 TCATTTGTTTCGGTAAAAGATGTTCT 58.063 30.769 0.00 0.00 0.00 3.01
548 549 7.860373 TCATTTGTTTCGGTAAAAGATGTTCTG 59.140 33.333 0.00 0.00 0.00 3.02
549 550 5.682943 TGTTTCGGTAAAAGATGTTCTGG 57.317 39.130 0.00 0.00 0.00 3.86
550 551 5.127491 TGTTTCGGTAAAAGATGTTCTGGT 58.873 37.500 0.00 0.00 0.00 4.00
551 552 6.289834 TGTTTCGGTAAAAGATGTTCTGGTA 58.710 36.000 0.00 0.00 0.00 3.25
552 553 6.938030 TGTTTCGGTAAAAGATGTTCTGGTAT 59.062 34.615 0.00 0.00 0.00 2.73
553 554 7.446013 TGTTTCGGTAAAAGATGTTCTGGTATT 59.554 33.333 0.00 0.00 0.00 1.89
554 555 7.989416 TTCGGTAAAAGATGTTCTGGTATTT 57.011 32.000 0.00 0.00 0.00 1.40
555 556 9.504708 TTTCGGTAAAAGATGTTCTGGTATTTA 57.495 29.630 0.00 0.00 0.00 1.40
556 557 9.675464 TTCGGTAAAAGATGTTCTGGTATTTAT 57.325 29.630 0.00 0.00 0.00 1.40
557 558 9.675464 TCGGTAAAAGATGTTCTGGTATTTATT 57.325 29.630 0.00 0.00 0.00 1.40
631 632 2.400399 GACGTTGTTCGAGTGAATGGA 58.600 47.619 0.00 0.00 42.86 3.41
704 705 7.169140 GCTCTGTTTAACCGTGAAATGAAAAAT 59.831 33.333 0.00 0.00 0.00 1.82
1124 1125 6.876257 AGATCTGTGTTCTTGACCAATTCTAC 59.124 38.462 0.00 0.00 0.00 2.59
1415 1416 5.914635 TGAAGTGTGAATTGAAGAAAATCGC 59.085 36.000 0.00 0.00 0.00 4.58
1570 1571 7.948357 TCAGTTAGTTAGTCAGCTAGTTTCAA 58.052 34.615 0.00 0.00 0.00 2.69
2419 2428 2.612604 GTTCTTCTTCGGGCTCTTCTC 58.387 52.381 0.00 0.00 0.00 2.87
2425 2434 0.684805 TTCGGGCTCTTCTCCTCCTC 60.685 60.000 0.00 0.00 0.00 3.71
2526 2535 1.579084 GCATAACGCCGTTGTTGGGA 61.579 55.000 13.65 0.00 33.32 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.594592 AAGGTTGCTGTCCGGCAC 60.595 61.111 0.00 0.00 42.27 5.01
15 16 2.281484 GAAGGTTGCTGTCCGGCA 60.281 61.111 0.00 0.00 40.74 5.69
16 17 1.578206 GAAGAAGGTTGCTGTCCGGC 61.578 60.000 0.00 0.00 0.00 6.13
17 18 0.250295 TGAAGAAGGTTGCTGTCCGG 60.250 55.000 0.00 0.00 0.00 5.14
18 19 1.593196 TTGAAGAAGGTTGCTGTCCG 58.407 50.000 0.00 0.00 0.00 4.79
19 20 4.590850 AAATTGAAGAAGGTTGCTGTCC 57.409 40.909 0.00 0.00 0.00 4.02
20 21 6.560253 TCTAAATTGAAGAAGGTTGCTGTC 57.440 37.500 0.00 0.00 0.00 3.51
21 22 6.959639 TTCTAAATTGAAGAAGGTTGCTGT 57.040 33.333 0.49 0.00 0.00 4.40
29 30 7.174946 TGCCTAACACCTTCTAAATTGAAGAAG 59.825 37.037 17.90 17.90 46.29 2.85
30 31 7.001674 TGCCTAACACCTTCTAAATTGAAGAA 58.998 34.615 7.02 5.49 44.40 2.52
31 32 6.539173 TGCCTAACACCTTCTAAATTGAAGA 58.461 36.000 7.02 0.00 44.40 2.87
32 33 6.817765 TGCCTAACACCTTCTAAATTGAAG 57.182 37.500 0.00 0.00 42.10 3.02
33 34 6.945435 TCATGCCTAACACCTTCTAAATTGAA 59.055 34.615 0.00 0.00 0.00 2.69
34 35 6.480763 TCATGCCTAACACCTTCTAAATTGA 58.519 36.000 0.00 0.00 0.00 2.57
35 36 6.183360 CCTCATGCCTAACACCTTCTAAATTG 60.183 42.308 0.00 0.00 0.00 2.32
36 37 5.888161 CCTCATGCCTAACACCTTCTAAATT 59.112 40.000 0.00 0.00 0.00 1.82
37 38 5.440610 CCTCATGCCTAACACCTTCTAAAT 58.559 41.667 0.00 0.00 0.00 1.40
38 39 4.843728 CCTCATGCCTAACACCTTCTAAA 58.156 43.478 0.00 0.00 0.00 1.85
39 40 3.370527 GCCTCATGCCTAACACCTTCTAA 60.371 47.826 0.00 0.00 0.00 2.10
40 41 2.170607 GCCTCATGCCTAACACCTTCTA 59.829 50.000 0.00 0.00 0.00 2.10
41 42 1.065126 GCCTCATGCCTAACACCTTCT 60.065 52.381 0.00 0.00 0.00 2.85
42 43 1.065126 AGCCTCATGCCTAACACCTTC 60.065 52.381 0.00 0.00 42.71 3.46
43 44 0.995024 AGCCTCATGCCTAACACCTT 59.005 50.000 0.00 0.00 42.71 3.50
44 45 0.254178 CAGCCTCATGCCTAACACCT 59.746 55.000 0.00 0.00 42.71 4.00
45 46 1.379642 GCAGCCTCATGCCTAACACC 61.380 60.000 0.00 0.00 42.71 4.16
46 47 2.101700 GCAGCCTCATGCCTAACAC 58.898 57.895 0.00 0.00 42.71 3.32
47 48 4.643795 GCAGCCTCATGCCTAACA 57.356 55.556 0.00 0.00 42.71 2.41
53 54 1.808945 GTGTATATGGCAGCCTCATGC 59.191 52.381 14.15 9.73 45.74 4.06
54 55 3.130280 TGTGTATATGGCAGCCTCATG 57.870 47.619 14.15 0.00 0.00 3.07
55 56 3.328637 TCATGTGTATATGGCAGCCTCAT 59.671 43.478 14.15 8.26 0.00 2.90
56 57 2.705127 TCATGTGTATATGGCAGCCTCA 59.295 45.455 14.15 0.00 0.00 3.86
57 58 3.407424 TCATGTGTATATGGCAGCCTC 57.593 47.619 14.15 0.00 0.00 4.70
58 59 3.328637 TCATCATGTGTATATGGCAGCCT 59.671 43.478 14.15 0.35 0.00 4.58
59 60 3.678289 TCATCATGTGTATATGGCAGCC 58.322 45.455 3.66 3.66 0.00 4.85
60 61 6.596888 AGTTATCATCATGTGTATATGGCAGC 59.403 38.462 0.00 0.00 0.00 5.25
61 62 9.828039 ATAGTTATCATCATGTGTATATGGCAG 57.172 33.333 0.00 0.00 0.00 4.85
62 63 9.603921 CATAGTTATCATCATGTGTATATGGCA 57.396 33.333 0.00 0.00 0.00 4.92
63 64 9.605275 ACATAGTTATCATCATGTGTATATGGC 57.395 33.333 0.00 0.00 30.64 4.40
72 73 9.935241 GGTCATTAGACATAGTTATCATCATGT 57.065 33.333 0.00 0.00 46.80 3.21
73 74 9.080915 CGGTCATTAGACATAGTTATCATCATG 57.919 37.037 0.00 0.00 46.80 3.07
74 75 8.807118 ACGGTCATTAGACATAGTTATCATCAT 58.193 33.333 0.00 0.00 46.80 2.45
75 76 8.178313 ACGGTCATTAGACATAGTTATCATCA 57.822 34.615 0.00 0.00 46.80 3.07
87 88 9.524106 CTTGTAACAATATACGGTCATTAGACA 57.476 33.333 0.00 0.00 46.80 3.41
88 89 8.975439 CCTTGTAACAATATACGGTCATTAGAC 58.025 37.037 0.00 0.00 44.21 2.59
89 90 8.916062 TCCTTGTAACAATATACGGTCATTAGA 58.084 33.333 0.00 0.00 0.00 2.10
90 91 9.193133 CTCCTTGTAACAATATACGGTCATTAG 57.807 37.037 0.00 0.00 0.00 1.73
91 92 8.145767 CCTCCTTGTAACAATATACGGTCATTA 58.854 37.037 0.00 0.00 0.00 1.90
92 93 6.990349 CCTCCTTGTAACAATATACGGTCATT 59.010 38.462 0.00 0.00 0.00 2.57
93 94 6.325545 TCCTCCTTGTAACAATATACGGTCAT 59.674 38.462 0.00 0.00 0.00 3.06
94 95 5.657745 TCCTCCTTGTAACAATATACGGTCA 59.342 40.000 0.00 0.00 0.00 4.02
95 96 6.152932 TCCTCCTTGTAACAATATACGGTC 57.847 41.667 0.00 0.00 0.00 4.79
96 97 6.553852 AGATCCTCCTTGTAACAATATACGGT 59.446 38.462 0.00 0.00 0.00 4.83
97 98 6.994221 AGATCCTCCTTGTAACAATATACGG 58.006 40.000 0.00 0.00 0.00 4.02
98 99 9.408069 GTAAGATCCTCCTTGTAACAATATACG 57.592 37.037 0.00 0.00 0.00 3.06
102 103 9.832445 GATTGTAAGATCCTCCTTGTAACAATA 57.168 33.333 0.00 0.00 35.07 1.90
103 104 8.552296 AGATTGTAAGATCCTCCTTGTAACAAT 58.448 33.333 0.00 0.00 36.41 2.71
104 105 7.918076 AGATTGTAAGATCCTCCTTGTAACAA 58.082 34.615 0.00 0.00 31.05 2.83
105 106 7.496346 AGATTGTAAGATCCTCCTTGTAACA 57.504 36.000 0.00 0.00 0.00 2.41
106 107 6.697892 CGAGATTGTAAGATCCTCCTTGTAAC 59.302 42.308 0.00 0.00 0.00 2.50
107 108 6.380274 ACGAGATTGTAAGATCCTCCTTGTAA 59.620 38.462 0.00 0.00 0.00 2.41
108 109 5.892119 ACGAGATTGTAAGATCCTCCTTGTA 59.108 40.000 0.00 0.00 0.00 2.41
109 110 4.712337 ACGAGATTGTAAGATCCTCCTTGT 59.288 41.667 0.00 0.00 0.00 3.16
110 111 5.046529 CACGAGATTGTAAGATCCTCCTTG 58.953 45.833 0.00 0.00 0.00 3.61
111 112 4.712337 ACACGAGATTGTAAGATCCTCCTT 59.288 41.667 0.00 0.00 0.00 3.36
112 113 4.098654 CACACGAGATTGTAAGATCCTCCT 59.901 45.833 0.00 0.00 0.00 3.69
113 114 4.363999 CACACGAGATTGTAAGATCCTCC 58.636 47.826 0.00 0.00 0.00 4.30
114 115 3.799420 GCACACGAGATTGTAAGATCCTC 59.201 47.826 0.00 0.00 0.00 3.71
115 116 3.449018 AGCACACGAGATTGTAAGATCCT 59.551 43.478 0.00 0.00 0.00 3.24
116 117 3.786635 AGCACACGAGATTGTAAGATCC 58.213 45.455 0.00 0.00 0.00 3.36
117 118 6.209361 TCATAGCACACGAGATTGTAAGATC 58.791 40.000 0.00 0.00 0.00 2.75
118 119 6.149129 TCATAGCACACGAGATTGTAAGAT 57.851 37.500 0.00 0.00 0.00 2.40
119 120 5.576447 TCATAGCACACGAGATTGTAAGA 57.424 39.130 0.00 0.00 0.00 2.10
120 121 7.559835 CTATCATAGCACACGAGATTGTAAG 57.440 40.000 0.00 0.00 0.00 2.34
136 137 6.370994 CACCTTCTATGCTTTGGCTATCATAG 59.629 42.308 10.28 10.28 39.58 2.23
137 138 6.183361 ACACCTTCTATGCTTTGGCTATCATA 60.183 38.462 0.00 0.00 39.59 2.15
138 139 5.068636 CACCTTCTATGCTTTGGCTATCAT 58.931 41.667 0.00 0.00 39.59 2.45
139 140 4.080356 ACACCTTCTATGCTTTGGCTATCA 60.080 41.667 0.00 0.00 39.59 2.15
140 141 4.455606 ACACCTTCTATGCTTTGGCTATC 58.544 43.478 0.00 0.00 39.59 2.08
141 142 4.510167 ACACCTTCTATGCTTTGGCTAT 57.490 40.909 0.00 0.00 39.59 2.97
142 143 4.301072 AACACCTTCTATGCTTTGGCTA 57.699 40.909 0.00 0.00 39.59 3.93
143 144 2.887151 ACACCTTCTATGCTTTGGCT 57.113 45.000 0.00 0.00 39.59 4.75
144 145 3.378427 CCTAACACCTTCTATGCTTTGGC 59.622 47.826 0.00 0.00 39.26 4.52
145 146 3.378427 GCCTAACACCTTCTATGCTTTGG 59.622 47.826 0.00 0.00 0.00 3.28
146 147 4.009675 TGCCTAACACCTTCTATGCTTTG 58.990 43.478 0.00 0.00 0.00 2.77
147 148 4.301072 TGCCTAACACCTTCTATGCTTT 57.699 40.909 0.00 0.00 0.00 3.51
148 149 4.080356 TCATGCCTAACACCTTCTATGCTT 60.080 41.667 0.00 0.00 0.00 3.91
149 150 3.455910 TCATGCCTAACACCTTCTATGCT 59.544 43.478 0.00 0.00 0.00 3.79
150 151 3.808728 TCATGCCTAACACCTTCTATGC 58.191 45.455 0.00 0.00 0.00 3.14
151 152 4.384056 CCTCATGCCTAACACCTTCTATG 58.616 47.826 0.00 0.00 0.00 2.23
152 153 3.181450 GCCTCATGCCTAACACCTTCTAT 60.181 47.826 0.00 0.00 0.00 1.98
153 154 2.170607 GCCTCATGCCTAACACCTTCTA 59.829 50.000 0.00 0.00 0.00 2.10
154 155 1.065126 GCCTCATGCCTAACACCTTCT 60.065 52.381 0.00 0.00 0.00 2.85
155 156 1.065126 AGCCTCATGCCTAACACCTTC 60.065 52.381 0.00 0.00 42.71 3.46
156 157 0.995024 AGCCTCATGCCTAACACCTT 59.005 50.000 0.00 0.00 42.71 3.50
157 158 1.486726 GTAGCCTCATGCCTAACACCT 59.513 52.381 0.00 0.00 42.71 4.00
158 159 1.475213 GGTAGCCTCATGCCTAACACC 60.475 57.143 0.00 0.00 42.71 4.16
159 160 1.209504 TGGTAGCCTCATGCCTAACAC 59.790 52.381 2.68 0.00 42.71 3.32
160 161 1.578897 TGGTAGCCTCATGCCTAACA 58.421 50.000 2.68 2.68 42.71 2.41
161 162 2.498167 CATGGTAGCCTCATGCCTAAC 58.502 52.381 0.00 0.00 42.71 2.34
162 163 2.936919 CATGGTAGCCTCATGCCTAA 57.063 50.000 0.00 0.00 42.71 2.69
167 168 1.878088 GTCATGCATGGTAGCCTCATG 59.122 52.381 25.97 10.16 43.39 3.07
168 169 1.773052 AGTCATGCATGGTAGCCTCAT 59.227 47.619 25.97 0.01 0.00 2.90
169 170 1.206878 AGTCATGCATGGTAGCCTCA 58.793 50.000 25.97 1.33 0.00 3.86
170 171 1.945394 CAAGTCATGCATGGTAGCCTC 59.055 52.381 25.97 8.47 0.00 4.70
171 172 1.561076 TCAAGTCATGCATGGTAGCCT 59.439 47.619 25.97 11.45 0.00 4.58
172 173 1.672881 GTCAAGTCATGCATGGTAGCC 59.327 52.381 25.97 9.48 0.00 3.93
173 174 2.358957 TGTCAAGTCATGCATGGTAGC 58.641 47.619 25.97 13.70 0.00 3.58
174 175 5.993441 TGATATGTCAAGTCATGCATGGTAG 59.007 40.000 25.97 13.66 31.31 3.18
175 176 5.927819 TGATATGTCAAGTCATGCATGGTA 58.072 37.500 25.97 5.34 31.31 3.25
176 177 4.784177 TGATATGTCAAGTCATGCATGGT 58.216 39.130 25.97 11.51 31.31 3.55
177 178 5.472137 TGATGATATGTCAAGTCATGCATGG 59.528 40.000 25.97 10.42 38.01 3.66
178 179 6.554334 TGATGATATGTCAAGTCATGCATG 57.446 37.500 21.07 21.07 38.01 4.06
179 180 6.374613 GGATGATGATATGTCAAGTCATGCAT 59.625 38.462 17.07 0.00 39.76 3.96
180 181 5.704053 GGATGATGATATGTCAAGTCATGCA 59.296 40.000 17.07 0.00 39.76 3.96
181 182 5.163884 CGGATGATGATATGTCAAGTCATGC 60.164 44.000 11.85 12.95 38.13 4.06
182 183 5.350640 CCGGATGATGATATGTCAAGTCATG 59.649 44.000 11.85 1.58 35.34 3.07
183 184 5.246883 TCCGGATGATGATATGTCAAGTCAT 59.753 40.000 0.00 7.94 36.99 3.06
184 185 4.588528 TCCGGATGATGATATGTCAAGTCA 59.411 41.667 0.00 0.00 38.01 3.41
185 186 5.139435 TCCGGATGATGATATGTCAAGTC 57.861 43.478 0.00 0.00 38.01 3.01
186 187 5.551305 TTCCGGATGATGATATGTCAAGT 57.449 39.130 4.15 0.00 38.01 3.16
187 188 6.168389 TGATTCCGGATGATGATATGTCAAG 58.832 40.000 4.15 0.00 38.01 3.02
188 189 6.112927 TGATTCCGGATGATGATATGTCAA 57.887 37.500 4.15 0.00 38.01 3.18
189 190 5.743636 TGATTCCGGATGATGATATGTCA 57.256 39.130 4.15 0.00 39.04 3.58
190 191 5.064452 GCTTGATTCCGGATGATGATATGTC 59.936 44.000 4.15 0.00 0.00 3.06
191 192 4.940046 GCTTGATTCCGGATGATGATATGT 59.060 41.667 4.15 0.00 0.00 2.29
192 193 4.939439 TGCTTGATTCCGGATGATGATATG 59.061 41.667 4.15 0.00 0.00 1.78
193 194 4.940046 GTGCTTGATTCCGGATGATGATAT 59.060 41.667 4.15 0.00 0.00 1.63
194 195 4.202346 TGTGCTTGATTCCGGATGATGATA 60.202 41.667 4.15 0.00 0.00 2.15
195 196 3.144506 GTGCTTGATTCCGGATGATGAT 58.855 45.455 4.15 0.00 0.00 2.45
196 197 2.093021 TGTGCTTGATTCCGGATGATGA 60.093 45.455 4.15 0.00 0.00 2.92
197 198 2.032550 GTGTGCTTGATTCCGGATGATG 59.967 50.000 4.15 0.00 0.00 3.07
198 199 2.292267 GTGTGCTTGATTCCGGATGAT 58.708 47.619 4.15 0.00 0.00 2.45
199 200 1.003003 TGTGTGCTTGATTCCGGATGA 59.997 47.619 4.15 0.00 0.00 2.92
200 201 1.452110 TGTGTGCTTGATTCCGGATG 58.548 50.000 4.15 0.00 0.00 3.51
201 202 2.019249 CATGTGTGCTTGATTCCGGAT 58.981 47.619 4.15 0.00 0.00 4.18
202 203 1.271325 ACATGTGTGCTTGATTCCGGA 60.271 47.619 0.00 0.00 0.00 5.14
203 204 1.135603 CACATGTGTGCTTGATTCCGG 60.136 52.381 18.03 0.00 39.39 5.14
204 205 1.805943 TCACATGTGTGCTTGATTCCG 59.194 47.619 24.63 0.00 45.25 4.30
205 206 3.254166 ACTTCACATGTGTGCTTGATTCC 59.746 43.478 24.63 0.00 45.25 3.01
206 207 4.494350 ACTTCACATGTGTGCTTGATTC 57.506 40.909 24.63 0.00 45.25 2.52
207 208 4.216257 GGTACTTCACATGTGTGCTTGATT 59.784 41.667 24.63 5.44 45.25 2.57
208 209 3.753272 GGTACTTCACATGTGTGCTTGAT 59.247 43.478 24.63 7.96 45.25 2.57
209 210 3.138304 GGTACTTCACATGTGTGCTTGA 58.862 45.455 24.63 1.92 45.25 3.02
210 211 2.226437 GGGTACTTCACATGTGTGCTTG 59.774 50.000 24.63 13.40 45.25 4.01
211 212 2.158682 TGGGTACTTCACATGTGTGCTT 60.159 45.455 24.63 10.74 45.25 3.91
212 213 1.419762 TGGGTACTTCACATGTGTGCT 59.580 47.619 24.63 10.74 45.25 4.40
213 214 1.890876 TGGGTACTTCACATGTGTGC 58.109 50.000 24.63 9.84 45.25 4.57
214 215 4.578516 TCTTTTGGGTACTTCACATGTGTG 59.421 41.667 24.63 19.70 46.91 3.82
215 216 4.787551 TCTTTTGGGTACTTCACATGTGT 58.212 39.130 24.63 9.13 0.00 3.72
216 217 5.766150 TTCTTTTGGGTACTTCACATGTG 57.234 39.130 20.18 20.18 0.00 3.21
217 218 5.891551 ACTTTCTTTTGGGTACTTCACATGT 59.108 36.000 0.00 0.00 0.00 3.21
218 219 6.183360 ACACTTTCTTTTGGGTACTTCACATG 60.183 38.462 0.00 0.00 0.00 3.21
219 220 5.891551 ACACTTTCTTTTGGGTACTTCACAT 59.108 36.000 0.00 0.00 0.00 3.21
220 221 5.258051 ACACTTTCTTTTGGGTACTTCACA 58.742 37.500 0.00 0.00 0.00 3.58
221 222 5.830000 ACACTTTCTTTTGGGTACTTCAC 57.170 39.130 0.00 0.00 0.00 3.18
222 223 8.434392 AGTATACACTTTCTTTTGGGTACTTCA 58.566 33.333 5.50 0.00 0.00 3.02
223 224 8.718734 CAGTATACACTTTCTTTTGGGTACTTC 58.281 37.037 5.50 0.00 30.46 3.01
224 225 7.174426 GCAGTATACACTTTCTTTTGGGTACTT 59.826 37.037 5.50 0.00 30.46 2.24
225 226 6.653740 GCAGTATACACTTTCTTTTGGGTACT 59.346 38.462 5.50 0.00 30.46 2.73
226 227 6.653740 AGCAGTATACACTTTCTTTTGGGTAC 59.346 38.462 5.50 0.00 30.46 3.34
227 228 6.775708 AGCAGTATACACTTTCTTTTGGGTA 58.224 36.000 5.50 0.00 30.46 3.69
228 229 5.631119 AGCAGTATACACTTTCTTTTGGGT 58.369 37.500 5.50 0.00 30.46 4.51
229 230 6.183360 CGTAGCAGTATACACTTTCTTTTGGG 60.183 42.308 5.50 0.00 30.46 4.12
230 231 6.588756 TCGTAGCAGTATACACTTTCTTTTGG 59.411 38.462 5.50 0.00 30.46 3.28
231 232 7.576750 TCGTAGCAGTATACACTTTCTTTTG 57.423 36.000 5.50 0.00 30.46 2.44
232 233 8.773404 AATCGTAGCAGTATACACTTTCTTTT 57.227 30.769 5.50 0.00 30.46 2.27
233 234 8.773404 AAATCGTAGCAGTATACACTTTCTTT 57.227 30.769 5.50 0.00 30.46 2.52
234 235 9.865321 TTAAATCGTAGCAGTATACACTTTCTT 57.135 29.630 5.50 0.00 30.46 2.52
237 238 9.257651 GGATTAAATCGTAGCAGTATACACTTT 57.742 33.333 5.50 0.00 30.46 2.66
238 239 7.871463 GGGATTAAATCGTAGCAGTATACACTT 59.129 37.037 5.50 0.00 30.46 3.16
239 240 7.232941 AGGGATTAAATCGTAGCAGTATACACT 59.767 37.037 5.50 4.72 34.42 3.55
240 241 7.376615 AGGGATTAAATCGTAGCAGTATACAC 58.623 38.462 5.50 0.00 0.00 2.90
241 242 7.534723 AGGGATTAAATCGTAGCAGTATACA 57.465 36.000 5.50 0.00 0.00 2.29
242 243 9.351570 GTAAGGGATTAAATCGTAGCAGTATAC 57.648 37.037 0.00 0.00 0.00 1.47
243 244 8.239314 CGTAAGGGATTAAATCGTAGCAGTATA 58.761 37.037 0.00 0.00 0.00 1.47
244 245 7.088905 CGTAAGGGATTAAATCGTAGCAGTAT 58.911 38.462 0.00 0.00 0.00 2.12
245 246 6.039717 ACGTAAGGGATTAAATCGTAGCAGTA 59.960 38.462 0.00 0.00 46.39 2.74
246 247 5.163478 ACGTAAGGGATTAAATCGTAGCAGT 60.163 40.000 0.00 0.00 46.39 4.40
247 248 5.287226 ACGTAAGGGATTAAATCGTAGCAG 58.713 41.667 0.00 0.00 46.39 4.24
248 249 5.266733 ACGTAAGGGATTAAATCGTAGCA 57.733 39.130 0.00 0.00 46.39 3.49
249 250 5.176406 GGAACGTAAGGGATTAAATCGTAGC 59.824 44.000 0.00 0.00 46.39 3.58
250 251 6.275335 TGGAACGTAAGGGATTAAATCGTAG 58.725 40.000 0.00 0.00 46.39 3.51
251 252 6.219417 TGGAACGTAAGGGATTAAATCGTA 57.781 37.500 0.00 0.00 46.39 3.43
252 253 5.088680 TGGAACGTAAGGGATTAAATCGT 57.911 39.130 0.00 0.00 46.39 3.73
253 254 5.503520 GCTTGGAACGTAAGGGATTAAATCG 60.504 44.000 0.00 0.00 46.39 3.34
254 255 5.589050 AGCTTGGAACGTAAGGGATTAAATC 59.411 40.000 0.00 0.00 46.39 2.17
255 256 5.506708 AGCTTGGAACGTAAGGGATTAAAT 58.493 37.500 0.00 0.00 46.39 1.40
256 257 4.913784 AGCTTGGAACGTAAGGGATTAAA 58.086 39.130 0.00 0.00 46.39 1.52
257 258 4.563140 AGCTTGGAACGTAAGGGATTAA 57.437 40.909 0.00 0.00 46.39 1.40
258 259 4.258543 CAAGCTTGGAACGTAAGGGATTA 58.741 43.478 19.14 0.00 46.39 1.75
259 260 3.081804 CAAGCTTGGAACGTAAGGGATT 58.918 45.455 19.14 0.00 46.39 3.01
260 261 2.711542 CAAGCTTGGAACGTAAGGGAT 58.288 47.619 19.14 0.00 46.39 3.85
261 262 2.178912 CAAGCTTGGAACGTAAGGGA 57.821 50.000 19.14 0.00 46.39 4.20
276 277 3.610911 AGTAACTAGATTGGCACCAAGC 58.389 45.455 9.64 9.64 42.02 4.01
277 278 7.865706 AATAAGTAACTAGATTGGCACCAAG 57.134 36.000 8.30 0.00 39.47 3.61
278 279 8.545472 ACTAATAAGTAACTAGATTGGCACCAA 58.455 33.333 4.24 4.24 35.70 3.67
279 280 8.086143 ACTAATAAGTAACTAGATTGGCACCA 57.914 34.615 0.00 0.00 32.84 4.17
280 281 9.473640 GTACTAATAAGTAACTAGATTGGCACC 57.526 37.037 0.00 0.00 39.90 5.01
283 284 9.911138 GGAGTACTAATAAGTAACTAGATTGGC 57.089 37.037 0.00 0.00 39.90 4.52
288 289 8.153550 CGGAGGGAGTACTAATAAGTAACTAGA 58.846 40.741 0.00 0.00 39.90 2.43
289 290 7.936301 ACGGAGGGAGTACTAATAAGTAACTAG 59.064 40.741 0.00 0.00 39.90 2.57
290 291 7.806180 ACGGAGGGAGTACTAATAAGTAACTA 58.194 38.462 0.00 0.00 39.90 2.24
291 292 6.667661 ACGGAGGGAGTACTAATAAGTAACT 58.332 40.000 0.00 0.00 39.90 2.24
292 293 6.016693 GGACGGAGGGAGTACTAATAAGTAAC 60.017 46.154 0.00 0.00 39.90 2.50
293 294 6.064717 GGACGGAGGGAGTACTAATAAGTAA 58.935 44.000 0.00 0.00 39.90 2.24
294 295 5.456763 GGGACGGAGGGAGTACTAATAAGTA 60.457 48.000 0.00 0.00 37.15 2.24
295 296 4.468713 GGACGGAGGGAGTACTAATAAGT 58.531 47.826 0.00 0.00 39.91 2.24
296 297 3.825585 GGGACGGAGGGAGTACTAATAAG 59.174 52.174 0.00 0.00 0.00 1.73
297 298 3.205056 TGGGACGGAGGGAGTACTAATAA 59.795 47.826 0.00 0.00 0.00 1.40
298 299 2.785269 TGGGACGGAGGGAGTACTAATA 59.215 50.000 0.00 0.00 0.00 0.98
299 300 1.572415 TGGGACGGAGGGAGTACTAAT 59.428 52.381 0.00 0.00 0.00 1.73
300 301 1.002069 TGGGACGGAGGGAGTACTAA 58.998 55.000 0.00 0.00 0.00 2.24
301 302 1.002069 TTGGGACGGAGGGAGTACTA 58.998 55.000 0.00 0.00 0.00 1.82
302 303 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
303 304 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
304 305 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
305 306 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
306 307 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
307 308 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
308 309 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
309 310 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
310 311 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
311 312 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
312 313 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
313 314 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
314 315 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
315 316 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
316 317 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
348 349 9.190317 ACACTAAGATGTGACTAGATACATTCA 57.810 33.333 14.60 0.00 40.12 2.57
350 351 9.809096 CAACACTAAGATGTGACTAGATACATT 57.191 33.333 14.60 6.63 40.12 2.71
351 352 8.417106 CCAACACTAAGATGTGACTAGATACAT 58.583 37.037 13.73 13.73 40.12 2.29
352 353 7.614192 TCCAACACTAAGATGTGACTAGATACA 59.386 37.037 0.00 1.16 40.12 2.29
353 354 7.997482 TCCAACACTAAGATGTGACTAGATAC 58.003 38.462 0.00 0.00 40.12 2.24
354 355 8.768501 ATCCAACACTAAGATGTGACTAGATA 57.231 34.615 0.00 0.00 40.12 1.98
355 356 7.667575 ATCCAACACTAAGATGTGACTAGAT 57.332 36.000 0.00 0.00 40.12 1.98
356 357 7.614192 TGTATCCAACACTAAGATGTGACTAGA 59.386 37.037 0.00 0.00 40.12 2.43
357 358 7.772166 TGTATCCAACACTAAGATGTGACTAG 58.228 38.462 1.47 0.00 40.12 2.57
358 359 7.712204 TGTATCCAACACTAAGATGTGACTA 57.288 36.000 1.47 0.00 40.12 2.59
359 360 6.605471 TGTATCCAACACTAAGATGTGACT 57.395 37.500 1.47 0.00 40.12 3.41
360 361 7.254117 CGAATGTATCCAACACTAAGATGTGAC 60.254 40.741 1.47 0.00 42.09 3.67
361 362 6.756542 CGAATGTATCCAACACTAAGATGTGA 59.243 38.462 1.47 0.00 42.09 3.58
362 363 6.535150 ACGAATGTATCCAACACTAAGATGTG 59.465 38.462 0.00 0.00 42.09 3.21
363 364 6.640518 ACGAATGTATCCAACACTAAGATGT 58.359 36.000 0.00 0.00 42.09 3.06
364 365 8.818141 ATACGAATGTATCCAACACTAAGATG 57.182 34.615 0.00 0.00 42.09 2.90
395 396 9.685828 CGTCCCAAAATTCTTGTCTTAAATTTA 57.314 29.630 0.00 0.00 32.84 1.40
396 397 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
397 398 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
398 399 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
399 400 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
400 401 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
401 402 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
402 403 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
403 404 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
404 405 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
405 406 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
406 407 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
407 408 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
408 409 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
409 410 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
410 411 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
411 412 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
412 413 1.203212 TCTACTCCCTCCGTCCCAAAA 60.203 52.381 0.00 0.00 0.00 2.44
413 414 0.410663 TCTACTCCCTCCGTCCCAAA 59.589 55.000 0.00 0.00 0.00 3.28
414 415 0.410663 TTCTACTCCCTCCGTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12
415 416 0.410663 TTTCTACTCCCTCCGTCCCA 59.589 55.000 0.00 0.00 0.00 4.37
416 417 1.206610 GTTTTCTACTCCCTCCGTCCC 59.793 57.143 0.00 0.00 0.00 4.46
417 418 1.897802 TGTTTTCTACTCCCTCCGTCC 59.102 52.381 0.00 0.00 0.00 4.79
418 419 3.672767 TTGTTTTCTACTCCCTCCGTC 57.327 47.619 0.00 0.00 0.00 4.79
419 420 3.868754 GCATTGTTTTCTACTCCCTCCGT 60.869 47.826 0.00 0.00 0.00 4.69
420 421 2.678336 GCATTGTTTTCTACTCCCTCCG 59.322 50.000 0.00 0.00 0.00 4.63
421 422 3.440522 GTGCATTGTTTTCTACTCCCTCC 59.559 47.826 0.00 0.00 0.00 4.30
422 423 4.072131 TGTGCATTGTTTTCTACTCCCTC 58.928 43.478 0.00 0.00 0.00 4.30
423 424 4.074970 CTGTGCATTGTTTTCTACTCCCT 58.925 43.478 0.00 0.00 0.00 4.20
424 425 3.821033 ACTGTGCATTGTTTTCTACTCCC 59.179 43.478 0.00 0.00 0.00 4.30
425 426 5.215160 CAACTGTGCATTGTTTTCTACTCC 58.785 41.667 4.82 0.00 0.00 3.85
441 442 1.122849 GTCACGCAAATGCAACTGTG 58.877 50.000 6.18 9.68 42.21 3.66
442 443 0.737804 TGTCACGCAAATGCAACTGT 59.262 45.000 6.18 0.00 42.21 3.55
443 444 1.837648 TTGTCACGCAAATGCAACTG 58.162 45.000 6.18 0.00 42.21 3.16
444 445 2.098934 TCTTTGTCACGCAAATGCAACT 59.901 40.909 6.18 0.00 45.00 3.16
445 446 2.458951 TCTTTGTCACGCAAATGCAAC 58.541 42.857 6.18 1.41 45.00 4.17
446 447 2.859526 TCTTTGTCACGCAAATGCAA 57.140 40.000 6.18 0.00 45.00 4.08
447 448 2.859526 TTCTTTGTCACGCAAATGCA 57.140 40.000 6.18 0.00 45.00 3.96
448 449 5.820926 TTATTTCTTTGTCACGCAAATGC 57.179 34.783 0.00 0.00 45.00 3.56
449 450 9.305110 GAAAATTATTTCTTTGTCACGCAAATG 57.695 29.630 0.00 0.00 45.00 2.32
450 451 8.495148 GGAAAATTATTTCTTTGTCACGCAAAT 58.505 29.630 0.00 0.00 45.00 2.32
451 452 7.492669 TGGAAAATTATTTCTTTGTCACGCAAA 59.507 29.630 0.00 0.00 43.65 3.68
452 453 6.980978 TGGAAAATTATTTCTTTGTCACGCAA 59.019 30.769 0.00 0.00 43.65 4.85
453 454 6.507900 TGGAAAATTATTTCTTTGTCACGCA 58.492 32.000 0.00 0.00 43.65 5.24
454 455 7.169140 ACTTGGAAAATTATTTCTTTGTCACGC 59.831 33.333 0.00 0.00 43.65 5.34
455 456 8.479280 CACTTGGAAAATTATTTCTTTGTCACG 58.521 33.333 0.00 0.00 43.65 4.35
456 457 8.275632 GCACTTGGAAAATTATTTCTTTGTCAC 58.724 33.333 0.00 0.00 43.65 3.67
457 458 8.203485 AGCACTTGGAAAATTATTTCTTTGTCA 58.797 29.630 0.00 0.00 43.65 3.58
458 459 8.593492 AGCACTTGGAAAATTATTTCTTTGTC 57.407 30.769 0.00 0.00 43.65 3.18
462 463 9.657419 CCATTAGCACTTGGAAAATTATTTCTT 57.343 29.630 0.00 0.00 43.65 2.52
463 464 8.815912 ACCATTAGCACTTGGAAAATTATTTCT 58.184 29.630 5.90 0.00 43.65 2.52
464 465 8.872845 CACCATTAGCACTTGGAAAATTATTTC 58.127 33.333 5.90 0.00 43.46 2.17
465 466 7.334171 GCACCATTAGCACTTGGAAAATTATTT 59.666 33.333 5.90 0.00 36.79 1.40
466 467 6.818142 GCACCATTAGCACTTGGAAAATTATT 59.182 34.615 5.90 0.00 36.79 1.40
467 468 6.070881 TGCACCATTAGCACTTGGAAAATTAT 60.071 34.615 5.90 0.00 37.02 1.28
468 469 5.244851 TGCACCATTAGCACTTGGAAAATTA 59.755 36.000 5.90 0.00 37.02 1.40
469 470 4.040217 TGCACCATTAGCACTTGGAAAATT 59.960 37.500 5.90 0.00 37.02 1.82
470 471 3.577848 TGCACCATTAGCACTTGGAAAAT 59.422 39.130 5.90 0.00 37.02 1.82
471 472 2.961741 TGCACCATTAGCACTTGGAAAA 59.038 40.909 5.90 0.00 37.02 2.29
472 473 2.591923 TGCACCATTAGCACTTGGAAA 58.408 42.857 5.90 0.00 37.02 3.13
473 474 2.284754 TGCACCATTAGCACTTGGAA 57.715 45.000 5.90 0.00 37.02 3.53
474 475 2.290832 TGATGCACCATTAGCACTTGGA 60.291 45.455 5.90 0.00 45.95 3.53
475 476 2.093890 TGATGCACCATTAGCACTTGG 58.906 47.619 0.00 0.00 45.95 3.61
476 477 2.751259 AGTGATGCACCATTAGCACTTG 59.249 45.455 0.00 0.00 45.95 3.16
477 478 3.077484 AGTGATGCACCATTAGCACTT 57.923 42.857 0.00 0.00 45.95 3.16
478 479 2.795231 AGTGATGCACCATTAGCACT 57.205 45.000 0.00 0.00 45.95 4.40
479 480 3.057315 ACAAAGTGATGCACCATTAGCAC 60.057 43.478 0.00 0.00 45.95 4.40
480 481 5.527443 ACACAAAGTGATGCACCATTAGCA 61.527 41.667 3.88 0.00 40.65 3.49
481 482 3.057315 ACACAAAGTGATGCACCATTAGC 60.057 43.478 3.88 0.00 36.96 3.09
482 483 4.771590 ACACAAAGTGATGCACCATTAG 57.228 40.909 3.88 0.00 36.96 1.73
483 484 4.340666 ACAACACAAAGTGATGCACCATTA 59.659 37.500 3.88 0.00 39.41 1.90
484 485 3.132646 ACAACACAAAGTGATGCACCATT 59.867 39.130 3.88 0.00 39.41 3.16
485 486 2.694628 ACAACACAAAGTGATGCACCAT 59.305 40.909 3.88 0.00 39.41 3.55
486 487 2.098614 ACAACACAAAGTGATGCACCA 58.901 42.857 3.88 0.00 39.41 4.17
487 488 2.869233 ACAACACAAAGTGATGCACC 57.131 45.000 3.88 0.00 39.41 5.01
488 489 7.594758 ACAAATATACAACACAAAGTGATGCAC 59.405 33.333 3.88 0.00 39.41 4.57
489 490 7.656412 ACAAATATACAACACAAAGTGATGCA 58.344 30.769 3.88 0.00 39.41 3.96
490 491 8.519492 AACAAATATACAACACAAAGTGATGC 57.481 30.769 3.88 0.00 39.41 3.91
518 519 9.372369 ACATCTTTTACCGAAACAAATGAAAAA 57.628 25.926 0.00 0.00 0.00 1.94
519 520 8.934507 ACATCTTTTACCGAAACAAATGAAAA 57.065 26.923 0.00 0.00 0.00 2.29
520 521 8.934507 AACATCTTTTACCGAAACAAATGAAA 57.065 26.923 0.00 0.00 0.00 2.69
521 522 8.410141 AGAACATCTTTTACCGAAACAAATGAA 58.590 29.630 0.00 0.00 0.00 2.57
522 523 7.860373 CAGAACATCTTTTACCGAAACAAATGA 59.140 33.333 0.00 0.00 0.00 2.57
523 524 7.114811 CCAGAACATCTTTTACCGAAACAAATG 59.885 37.037 0.00 0.00 0.00 2.32
524 525 7.145323 CCAGAACATCTTTTACCGAAACAAAT 58.855 34.615 0.00 0.00 0.00 2.32
525 526 6.095720 ACCAGAACATCTTTTACCGAAACAAA 59.904 34.615 0.00 0.00 0.00 2.83
526 527 5.591067 ACCAGAACATCTTTTACCGAAACAA 59.409 36.000 0.00 0.00 0.00 2.83
527 528 5.127491 ACCAGAACATCTTTTACCGAAACA 58.873 37.500 0.00 0.00 0.00 2.83
528 529 5.684550 ACCAGAACATCTTTTACCGAAAC 57.315 39.130 0.00 0.00 0.00 2.78
529 530 7.989416 AATACCAGAACATCTTTTACCGAAA 57.011 32.000 0.00 0.00 0.00 3.46
530 531 7.989416 AAATACCAGAACATCTTTTACCGAA 57.011 32.000 0.00 0.00 0.00 4.30
531 532 9.675464 AATAAATACCAGAACATCTTTTACCGA 57.325 29.630 0.00 0.00 0.00 4.69
557 558 2.178580 CAGGAGCTATTGGCCCAAAAA 58.821 47.619 0.00 0.00 43.05 1.94
558 559 1.077005 ACAGGAGCTATTGGCCCAAAA 59.923 47.619 0.00 0.00 43.05 2.44
559 560 0.704076 ACAGGAGCTATTGGCCCAAA 59.296 50.000 0.00 0.00 43.05 3.28
704 705 2.756760 ACTCAAATCGCTAACCCTCGTA 59.243 45.455 0.00 0.00 0.00 3.43
1124 1125 4.694339 AGAAATCGGGAGAAATTAGACCG 58.306 43.478 0.00 0.00 45.37 4.79
1415 1416 4.495349 CGATCAGATGCTTTAGTTGCTTGG 60.495 45.833 0.00 0.00 0.00 3.61
1465 1466 2.491693 CACAACCATAAAATGCTCCCGT 59.508 45.455 0.00 0.00 0.00 5.28
1997 2005 4.634004 TGGAACCGTAGACATGCATAAAAG 59.366 41.667 0.00 0.00 0.00 2.27
2393 2402 2.260434 CCGAAGAAGAACCCGCGA 59.740 61.111 8.23 0.00 0.00 5.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.