Multiple sequence alignment - TraesCS2B01G104400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G104400 chr2B 100.000 5323 0 0 1 5323 65044473 65049795 0.000000e+00 9830.0
1 TraesCS2B01G104400 chr2B 77.518 1539 281 54 2978 4484 20146455 20147960 0.000000e+00 865.0
2 TraesCS2B01G104400 chr2B 88.053 226 24 2 293 515 65089958 65090183 1.140000e-66 265.0
3 TraesCS2B01G104400 chr2B 84.644 267 29 5 278 532 65027511 65027777 6.840000e-64 255.0
4 TraesCS2B01G104400 chr2D 90.316 1993 118 29 923 2880 37277774 37279726 0.000000e+00 2542.0
5 TraesCS2B01G104400 chr2D 92.189 909 52 12 2916 3808 37281482 37282387 0.000000e+00 1267.0
6 TraesCS2B01G104400 chr2D 90.586 871 71 9 3801 4664 37296933 37297799 0.000000e+00 1144.0
7 TraesCS2B01G104400 chr2D 96.368 413 14 1 294 706 37273879 37274290 0.000000e+00 678.0
8 TraesCS2B01G104400 chr2D 91.246 297 12 2 1 297 37273339 37273621 5.000000e-105 392.0
9 TraesCS2B01G104400 chr2D 93.776 241 5 4 699 929 37277254 37277494 2.360000e-93 353.0
10 TraesCS2B01G104400 chr2D 81.818 385 54 11 4753 5130 450874687 450874312 5.180000e-80 309.0
11 TraesCS2B01G104400 chr2D 84.733 262 28 4 278 532 37265462 37265718 8.850000e-63 252.0
12 TraesCS2B01G104400 chr2D 89.655 58 5 1 2875 2931 37279899 37279956 7.390000e-09 73.1
13 TraesCS2B01G104400 chr5D 77.827 1565 294 44 2972 4509 438589654 438588116 0.000000e+00 918.0
14 TraesCS2B01G104400 chr5D 78.152 1515 276 47 2978 4462 438438824 438437335 0.000000e+00 913.0
15 TraesCS2B01G104400 chr5D 77.511 1543 274 50 2973 4484 438559080 438557580 0.000000e+00 859.0
16 TraesCS2B01G104400 chr5D 76.215 1585 286 62 2979 4524 438569467 438567935 0.000000e+00 754.0
17 TraesCS2B01G104400 chr5D 79.811 1060 182 23 3040 4079 438443326 438442279 0.000000e+00 743.0
18 TraesCS2B01G104400 chr5D 76.037 1519 306 44 2973 4465 438521571 438520085 0.000000e+00 736.0
19 TraesCS2B01G104400 chr5D 75.827 1361 284 30 997 2342 438441279 438439949 0.000000e+00 649.0
20 TraesCS2B01G104400 chr5D 78.905 1005 172 31 3065 4049 438574886 438573902 0.000000e+00 645.0
21 TraesCS2B01G104400 chr5D 76.010 817 148 33 1040 1841 438435780 438434997 3.890000e-101 379.0
22 TraesCS2B01G104400 chr5D 77.679 448 82 7 1056 1503 438571437 438571008 1.900000e-64 257.0
23 TraesCS2B01G104400 chr2A 77.989 1522 273 50 2978 4465 14711963 14710470 0.000000e+00 898.0
24 TraesCS2B01G104400 chr2A 78.462 1430 250 43 3072 4465 14703628 14702221 0.000000e+00 881.0
25 TraesCS2B01G104400 chr2A 77.411 1514 290 44 2983 4465 14721224 14719732 0.000000e+00 854.0
26 TraesCS2B01G104400 chr2A 73.196 1358 299 48 1034 2367 52766415 52765099 1.060000e-116 431.0
27 TraesCS2B01G104400 chr2A 89.098 266 26 1 270 532 42190027 42190292 1.430000e-85 327.0
28 TraesCS2B01G104400 chr2A 81.500 400 55 16 4744 5131 749965706 749966098 1.440000e-80 311.0
29 TraesCS2B01G104400 chr2A 93.000 200 13 1 5125 5323 42172598 42172797 1.880000e-74 291.0
30 TraesCS2B01G104400 chr2A 85.496 262 31 3 278 532 42166325 42166586 3.160000e-67 267.0
31 TraesCS2B01G104400 chr5B 77.572 1565 297 46 2972 4509 533494244 533492707 0.000000e+00 896.0
32 TraesCS2B01G104400 chr5B 77.632 1520 285 47 2978 4462 533035454 533033955 0.000000e+00 872.0
33 TraesCS2B01G104400 chr5B 77.108 1542 276 52 2973 4480 533389669 533388171 0.000000e+00 821.0
34 TraesCS2B01G104400 chr5B 76.590 1525 285 45 2979 4476 533451377 533449898 0.000000e+00 773.0
35 TraesCS2B01G104400 chr5B 76.590 1384 284 27 997 2369 533038229 533036875 0.000000e+00 725.0
36 TraesCS2B01G104400 chr5B 75.960 1510 281 53 2981 4463 533018819 533017365 0.000000e+00 702.0
37 TraesCS2B01G104400 chr5B 73.565 1324 309 23 1056 2369 533481241 533479949 8.070000e-128 468.0
38 TraesCS2B01G104400 chr5B 73.068 1229 291 30 1131 2341 532548155 532549361 2.990000e-107 399.0
39 TraesCS2B01G104400 chr5A 77.328 1557 302 46 2981 4509 554201315 554199782 0.000000e+00 872.0
40 TraesCS2B01G104400 chr5A 77.031 1563 286 46 2979 4508 554236174 554234652 0.000000e+00 830.0
41 TraesCS2B01G104400 chr5A 76.974 1507 284 47 2986 4465 554083186 554081716 0.000000e+00 802.0
42 TraesCS2B01G104400 chr5A 76.346 1374 268 37 997 2351 553499041 553497706 0.000000e+00 684.0
43 TraesCS2B01G104400 chr5A 78.165 1090 196 36 2978 4049 554189812 554188747 0.000000e+00 656.0
44 TraesCS2B01G104400 chr5A 73.041 1187 286 23 1132 2302 554062959 554061791 6.460000e-104 388.0
45 TraesCS2B01G104400 chr5A 73.494 249 54 9 1423 1667 554146120 554145880 3.420000e-12 84.2
46 TraesCS2B01G104400 chrUn 78.855 1258 193 54 3065 4288 405107598 405106380 0.000000e+00 782.0
47 TraesCS2B01G104400 chrUn 83.161 386 51 12 4744 5124 171718713 171719089 1.840000e-89 340.0
48 TraesCS2B01G104400 chr7B 83.947 380 42 14 4755 5127 169310084 169310451 3.950000e-91 346.0
49 TraesCS2B01G104400 chr7D 82.828 396 47 15 4744 5130 64510730 64510347 8.540000e-88 335.0
50 TraesCS2B01G104400 chr4B 84.527 349 37 12 4744 5082 667397459 667397800 3.970000e-86 329.0
51 TraesCS2B01G104400 chr1D 82.564 390 47 14 4744 5127 254656137 254656511 1.850000e-84 324.0
52 TraesCS2B01G104400 chr7A 81.841 391 54 13 4744 5127 163778443 163778823 4.000000e-81 313.0
53 TraesCS2B01G104400 chr4A 81.250 400 60 11 4739 5131 266031727 266032118 5.180000e-80 309.0
54 TraesCS2B01G104400 chr3B 80.899 267 43 8 4148 4410 9568816 9568554 2.510000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G104400 chr2B 65044473 65049795 5322 False 9830.000000 9830 100.000000 1 5323 1 chr2B.!!$F3 5322
1 TraesCS2B01G104400 chr2B 20146455 20147960 1505 False 865.000000 865 77.518000 2978 4484 1 chr2B.!!$F1 1506
2 TraesCS2B01G104400 chr2D 37296933 37297799 866 False 1144.000000 1144 90.586000 3801 4664 1 chr2D.!!$F2 863
3 TraesCS2B01G104400 chr2D 37273339 37282387 9048 False 884.183333 2542 92.258333 1 3808 6 chr2D.!!$F3 3807
4 TraesCS2B01G104400 chr5D 438588116 438589654 1538 True 918.000000 918 77.827000 2972 4509 1 chr5D.!!$R3 1537
5 TraesCS2B01G104400 chr5D 438557580 438559080 1500 True 859.000000 859 77.511000 2973 4484 1 chr5D.!!$R2 1511
6 TraesCS2B01G104400 chr5D 438520085 438521571 1486 True 736.000000 736 76.037000 2973 4465 1 chr5D.!!$R1 1492
7 TraesCS2B01G104400 chr5D 438434997 438443326 8329 True 671.000000 913 77.450000 997 4462 4 chr5D.!!$R4 3465
8 TraesCS2B01G104400 chr5D 438567935 438574886 6951 True 552.000000 754 77.599667 1056 4524 3 chr5D.!!$R5 3468
9 TraesCS2B01G104400 chr2A 14710470 14711963 1493 True 898.000000 898 77.989000 2978 4465 1 chr2A.!!$R2 1487
10 TraesCS2B01G104400 chr2A 14702221 14703628 1407 True 881.000000 881 78.462000 3072 4465 1 chr2A.!!$R1 1393
11 TraesCS2B01G104400 chr2A 14719732 14721224 1492 True 854.000000 854 77.411000 2983 4465 1 chr2A.!!$R3 1482
12 TraesCS2B01G104400 chr2A 52765099 52766415 1316 True 431.000000 431 73.196000 1034 2367 1 chr2A.!!$R4 1333
13 TraesCS2B01G104400 chr5B 533492707 533494244 1537 True 896.000000 896 77.572000 2972 4509 1 chr5B.!!$R5 1537
14 TraesCS2B01G104400 chr5B 533388171 533389669 1498 True 821.000000 821 77.108000 2973 4480 1 chr5B.!!$R2 1507
15 TraesCS2B01G104400 chr5B 533033955 533038229 4274 True 798.500000 872 77.111000 997 4462 2 chr5B.!!$R6 3465
16 TraesCS2B01G104400 chr5B 533449898 533451377 1479 True 773.000000 773 76.590000 2979 4476 1 chr5B.!!$R3 1497
17 TraesCS2B01G104400 chr5B 533017365 533018819 1454 True 702.000000 702 75.960000 2981 4463 1 chr5B.!!$R1 1482
18 TraesCS2B01G104400 chr5B 533479949 533481241 1292 True 468.000000 468 73.565000 1056 2369 1 chr5B.!!$R4 1313
19 TraesCS2B01G104400 chr5B 532548155 532549361 1206 False 399.000000 399 73.068000 1131 2341 1 chr5B.!!$F1 1210
20 TraesCS2B01G104400 chr5A 554199782 554201315 1533 True 872.000000 872 77.328000 2981 4509 1 chr5A.!!$R6 1528
21 TraesCS2B01G104400 chr5A 554234652 554236174 1522 True 830.000000 830 77.031000 2979 4508 1 chr5A.!!$R7 1529
22 TraesCS2B01G104400 chr5A 554081716 554083186 1470 True 802.000000 802 76.974000 2986 4465 1 chr5A.!!$R3 1479
23 TraesCS2B01G104400 chr5A 553497706 553499041 1335 True 684.000000 684 76.346000 997 2351 1 chr5A.!!$R1 1354
24 TraesCS2B01G104400 chr5A 554188747 554189812 1065 True 656.000000 656 78.165000 2978 4049 1 chr5A.!!$R5 1071
25 TraesCS2B01G104400 chr5A 554061791 554062959 1168 True 388.000000 388 73.041000 1132 2302 1 chr5A.!!$R2 1170
26 TraesCS2B01G104400 chrUn 405106380 405107598 1218 True 782.000000 782 78.855000 3065 4288 1 chrUn.!!$R1 1223

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
887 4121 0.452784 GGTCGTTCGTCAAAGCATGC 60.453 55.0 10.51 10.51 0.00 4.06 F
1123 4656 0.178921 ACTCTCTCCTGGCTCCACAA 60.179 55.0 0.00 0.00 0.00 3.33 F
1126 4659 0.179089 CTCTCCTGGCTCCACAATCG 60.179 60.0 0.00 0.00 0.00 3.34 F
1434 4979 0.647410 CGGCAGTGCTTCTGAATACG 59.353 55.0 16.11 2.47 46.27 3.06 F
3087 9419 0.409484 AGAAAACCCTCCCCATGGTG 59.591 55.0 11.73 0.00 34.34 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1719 5267 0.176219 CCGTGCTAATGTTCCCCGTA 59.824 55.000 0.00 0.00 0.00 4.02 R
2381 5966 1.006878 AGGGAGTAGTAGAAAGCGGGT 59.993 52.381 0.00 0.00 0.00 5.28 R
2472 6057 1.468736 GCGAAACTAGTACTCCCACCG 60.469 57.143 0.00 0.43 0.00 4.94 R
3144 9477 1.268184 CCGTCCGATCATGCATGTTTG 60.268 52.381 25.43 20.00 0.00 2.93 R
4947 11913 0.030235 AGTTTCGGTTTTGCTTCCGC 59.970 50.000 0.00 0.00 45.44 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 4.208686 GTAGCTCGGGCCGGACTG 62.209 72.222 27.98 11.02 39.73 3.51
87 88 0.887836 TGGACGCGGCGATACTATCT 60.888 55.000 30.94 2.93 0.00 1.98
135 136 7.948357 AGTACCACTAATAATGACAAGCGATA 58.052 34.615 0.00 0.00 0.00 2.92
316 578 7.173032 TCTACTGAGTAACTAGATTGTCACCA 58.827 38.462 0.00 0.00 0.00 4.17
441 703 2.310052 AGCCTCATGCCTAAAACCTTCT 59.690 45.455 0.00 0.00 42.71 2.85
532 794 1.559219 TCAGGTGTACATGACATGGGG 59.441 52.381 19.39 0.00 41.14 4.96
679 941 5.627780 GCTATAAATTTCCGGGCAAATTACG 59.372 40.000 12.74 5.16 35.35 3.18
706 3939 7.578955 GCCTCGCTAGAATAGGTTAATATTCCA 60.579 40.741 0.00 0.00 41.24 3.53
717 3950 7.362802 AGGTTAATATTCCAGTCACTAGTCC 57.637 40.000 0.00 0.00 0.00 3.85
850 4083 7.857734 ATCATATGGTTACGTGATCAAACAA 57.142 32.000 10.18 0.44 0.00 2.83
861 4095 2.225091 TGATCAAACAAGTGGGGATGCT 60.225 45.455 0.00 0.00 0.00 3.79
887 4121 0.452784 GGTCGTTCGTCAAAGCATGC 60.453 55.000 10.51 10.51 0.00 4.06
892 4126 2.151736 CGTTCGTCAAAGCATGCTTTTG 59.848 45.455 36.90 29.79 42.93 2.44
923 4165 5.615925 CCAAGGCTTGGTAATAGAGTACT 57.384 43.478 33.43 0.00 45.93 2.73
924 4166 5.602628 CCAAGGCTTGGTAATAGAGTACTC 58.397 45.833 33.43 15.41 45.93 2.59
927 4169 3.965347 GGCTTGGTAATAGAGTACTCCCA 59.035 47.826 19.38 15.41 0.00 4.37
928 4170 4.039366 GGCTTGGTAATAGAGTACTCCCAG 59.961 50.000 19.38 12.60 0.00 4.45
929 4171 4.650131 GCTTGGTAATAGAGTACTCCCAGT 59.350 45.833 19.38 9.49 0.00 4.00
957 4486 1.448540 CAGTTGGCTGCCTAGTCCG 60.449 63.158 21.03 0.54 35.77 4.79
1121 4654 1.612395 CCACTCTCTCCTGGCTCCAC 61.612 65.000 0.00 0.00 0.00 4.02
1122 4655 0.902048 CACTCTCTCCTGGCTCCACA 60.902 60.000 0.00 0.00 0.00 4.17
1123 4656 0.178921 ACTCTCTCCTGGCTCCACAA 60.179 55.000 0.00 0.00 0.00 3.33
1124 4657 1.202330 CTCTCTCCTGGCTCCACAAT 58.798 55.000 0.00 0.00 0.00 2.71
1125 4658 1.138661 CTCTCTCCTGGCTCCACAATC 59.861 57.143 0.00 0.00 0.00 2.67
1126 4659 0.179089 CTCTCCTGGCTCCACAATCG 60.179 60.000 0.00 0.00 0.00 3.34
1127 4660 0.904865 TCTCCTGGCTCCACAATCGT 60.905 55.000 0.00 0.00 0.00 3.73
1183 4716 4.840005 GCTTCTTCGCCCCCTCCG 62.840 72.222 0.00 0.00 0.00 4.63
1431 4976 1.016130 CGACGGCAGTGCTTCTGAAT 61.016 55.000 16.11 0.00 46.27 2.57
1434 4979 0.647410 CGGCAGTGCTTCTGAATACG 59.353 55.000 16.11 2.47 46.27 3.06
1710 5258 0.967380 CGGGGTACTCGGTTAGTGGT 60.967 60.000 0.00 0.00 39.39 4.16
1932 5514 1.948834 CATGAATGCAACCGCTATGGA 59.051 47.619 0.00 0.00 42.00 3.41
1979 5561 1.303074 AGACGGACTCGCCTGTGTA 60.303 57.895 0.00 0.00 40.63 2.90
2046 5628 2.048603 GGCTGGCGGCAATTTCTCT 61.049 57.895 21.68 0.00 44.01 3.10
2165 5747 5.447279 GCGGCAAGGATATAAATACATTCGG 60.447 44.000 0.00 0.00 0.00 4.30
2343 5925 2.673368 CACACTTTATCTCCGTCTTGCC 59.327 50.000 0.00 0.00 0.00 4.52
2402 5987 2.243221 ACCCGCTTTCTACTACTCCCTA 59.757 50.000 0.00 0.00 0.00 3.53
2404 5989 4.105377 ACCCGCTTTCTACTACTCCCTATA 59.895 45.833 0.00 0.00 0.00 1.31
2405 5990 5.222296 ACCCGCTTTCTACTACTCCCTATAT 60.222 44.000 0.00 0.00 0.00 0.86
2406 5991 5.715753 CCCGCTTTCTACTACTCCCTATATT 59.284 44.000 0.00 0.00 0.00 1.28
2409 5994 7.255871 CCGCTTTCTACTACTCCCTATATTGTT 60.256 40.741 0.00 0.00 0.00 2.83
2431 6016 9.944663 TTGTTCAATATAAGTGTCACAGTTTTC 57.055 29.630 2.42 0.00 0.00 2.29
2436 6021 9.599322 CAATATAAGTGTCACAGTTTTCAACTC 57.401 33.333 2.42 0.00 40.46 3.01
2438 6023 5.957842 AAGTGTCACAGTTTTCAACTCAA 57.042 34.783 5.62 0.00 40.46 3.02
2439 6024 5.957842 AGTGTCACAGTTTTCAACTCAAA 57.042 34.783 5.62 0.00 40.46 2.69
2440 6025 6.325919 AGTGTCACAGTTTTCAACTCAAAA 57.674 33.333 5.62 0.00 40.46 2.44
2441 6026 6.149633 AGTGTCACAGTTTTCAACTCAAAAC 58.850 36.000 5.62 1.35 43.73 2.43
2450 6035 6.887368 GTTTTCAACTCAAAACTGCAAAACT 58.113 32.000 0.00 0.00 41.28 2.66
2451 6036 6.464895 TTTCAACTCAAAACTGCAAAACTG 57.535 33.333 0.00 0.00 0.00 3.16
2452 6037 3.925913 TCAACTCAAAACTGCAAAACTGC 59.074 39.130 0.00 0.00 0.00 4.40
2453 6038 3.874392 ACTCAAAACTGCAAAACTGCT 57.126 38.095 0.00 0.00 35.49 4.24
2454 6039 4.981806 ACTCAAAACTGCAAAACTGCTA 57.018 36.364 0.00 0.00 35.49 3.49
2455 6040 4.672409 ACTCAAAACTGCAAAACTGCTAC 58.328 39.130 0.00 0.00 35.49 3.58
2456 6041 4.157656 ACTCAAAACTGCAAAACTGCTACA 59.842 37.500 0.00 0.00 35.49 2.74
2457 6042 4.420168 TCAAAACTGCAAAACTGCTACAC 58.580 39.130 0.00 0.00 35.49 2.90
2458 6043 4.157656 TCAAAACTGCAAAACTGCTACACT 59.842 37.500 0.00 0.00 35.49 3.55
2459 6044 4.718940 AAACTGCAAAACTGCTACACTT 57.281 36.364 0.00 0.00 35.49 3.16
2460 6045 5.828299 AAACTGCAAAACTGCTACACTTA 57.172 34.783 0.00 0.00 35.49 2.24
2461 6046 6.391227 AAACTGCAAAACTGCTACACTTAT 57.609 33.333 0.00 0.00 35.49 1.73
2462 6047 6.391227 AACTGCAAAACTGCTACACTTATT 57.609 33.333 0.00 0.00 35.49 1.40
2463 6048 6.391227 ACTGCAAAACTGCTACACTTATTT 57.609 33.333 0.00 0.00 35.49 1.40
2464 6049 6.805713 ACTGCAAAACTGCTACACTTATTTT 58.194 32.000 0.00 0.00 35.49 1.82
2465 6050 7.936584 ACTGCAAAACTGCTACACTTATTTTA 58.063 30.769 0.00 0.00 35.49 1.52
2490 6075 3.067883 GGATCGGTGGGAGTACTAGTTTC 59.932 52.174 0.00 0.00 0.00 2.78
2492 6077 1.468736 CGGTGGGAGTACTAGTTTCGC 60.469 57.143 0.00 8.78 0.00 4.70
2553 6149 7.479980 TCTTCATGTTTCTACTGTTGGTTTTG 58.520 34.615 0.00 0.00 0.00 2.44
2555 6152 6.559810 TCATGTTTCTACTGTTGGTTTTGTG 58.440 36.000 0.00 0.00 0.00 3.33
2676 6450 5.180680 AGTTTTAGGCGGTATTTGTGTTCTC 59.819 40.000 0.00 0.00 0.00 2.87
2677 6451 2.109425 AGGCGGTATTTGTGTTCTCC 57.891 50.000 0.00 0.00 0.00 3.71
2693 6467 6.039616 GTGTTCTCCTACTCATAAGCTTCTG 58.960 44.000 0.00 3.28 0.00 3.02
2697 6471 3.639094 TCCTACTCATAAGCTTCTGCCTC 59.361 47.826 0.00 0.00 40.80 4.70
2736 6510 8.964420 ACAAAGGTATGTTTATTTCAATGTCG 57.036 30.769 0.00 0.00 0.00 4.35
2782 6556 8.874744 ACCATCTTATGAGAATATCCATTTGG 57.125 34.615 0.00 0.00 35.07 3.28
2785 6559 6.851318 TCTTATGAGAATATCCATTTGGCCA 58.149 36.000 0.00 0.00 34.44 5.36
2873 7332 9.696917 AGATTACAGCAAACAGAAAAATTTAGG 57.303 29.630 0.00 0.00 0.00 2.69
2880 7339 6.292114 GCAAACAGAAAAATTTAGGTGGTTCG 60.292 38.462 0.00 0.00 0.00 3.95
2881 7340 6.459670 AACAGAAAAATTTAGGTGGTTCGT 57.540 33.333 0.00 0.00 0.00 3.85
2918 7555 1.134946 GCACATATGCCTTGTGGGTTC 59.865 52.381 1.58 0.00 46.97 3.62
2950 9282 5.651576 TGCTTGTATTATGCTTGTTGGATGA 59.348 36.000 0.00 0.00 0.00 2.92
2990 9322 2.227626 TGGTGACAATAACATTGTGCGG 59.772 45.455 9.16 0.00 37.44 5.69
3085 9417 1.619704 GGAAGAAAACCCTCCCCATGG 60.620 57.143 4.14 4.14 0.00 3.66
3087 9419 0.409484 AGAAAACCCTCCCCATGGTG 59.591 55.000 11.73 0.00 34.34 4.17
3144 9477 3.364366 CCTCGCAACACACAATTTCTCTC 60.364 47.826 0.00 0.00 0.00 3.20
3514 9887 5.724328 TGGTGTGTATTCTTGCAACAAAAA 58.276 33.333 0.00 0.00 0.00 1.94
3600 9998 7.108847 AGAAAATTGTTGTTGGATTGGACAAA 58.891 30.769 0.00 0.00 37.49 2.83
3748 10146 2.710096 TAGCAGACTTTGGTATGGCC 57.290 50.000 0.00 0.00 38.70 5.36
3790 10188 2.035321 ACAAAGTGCAAATACCCAACGG 59.965 45.455 0.00 0.00 0.00 4.44
3824 10237 5.191722 ACATAGTGAGTATCCATTGGGTGTT 59.808 40.000 2.09 0.00 34.93 3.32
4219 10684 5.719563 TGCCGGACTCATCTATTATGGATAA 59.280 40.000 5.05 0.00 0.00 1.75
4220 10685 6.043411 GCCGGACTCATCTATTATGGATAAC 58.957 44.000 5.05 0.00 0.00 1.89
4221 10686 6.127310 GCCGGACTCATCTATTATGGATAACT 60.127 42.308 5.05 0.00 0.00 2.24
4316 10785 7.771183 ACCACATATGTCATTTATTGTGTTCC 58.229 34.615 5.07 0.00 0.00 3.62
4419 10897 7.542130 GCAAAACAGAAATGATATTCCGACTTT 59.458 33.333 0.00 0.00 0.00 2.66
4514 10993 8.658609 CAAAATGCTCTCAAAAGAAAACTTTGA 58.341 29.630 0.00 0.00 39.79 2.69
4526 11005 8.560576 AAAGAAAACTTTGAATGTATCACACG 57.439 30.769 0.00 0.00 37.92 4.49
4531 11010 6.985188 ACTTTGAATGTATCACACGCTATT 57.015 33.333 0.00 0.00 37.92 1.73
4533 11012 7.464358 ACTTTGAATGTATCACACGCTATTTC 58.536 34.615 0.00 0.00 37.92 2.17
4540 11019 5.650266 TGTATCACACGCTATTTCCCATTTT 59.350 36.000 0.00 0.00 0.00 1.82
4541 11020 4.695217 TCACACGCTATTTCCCATTTTC 57.305 40.909 0.00 0.00 0.00 2.29
4545 11027 5.868801 CACACGCTATTTCCCATTTTCAAAT 59.131 36.000 0.00 0.00 0.00 2.32
4548 11030 8.257306 ACACGCTATTTCCCATTTTCAAATAAT 58.743 29.630 0.00 0.00 0.00 1.28
4562 11044 5.539582 TCAAATAATTGCACACTACCGAC 57.460 39.130 0.00 0.00 36.45 4.79
4564 11046 5.470437 TCAAATAATTGCACACTACCGACAA 59.530 36.000 0.00 0.00 36.45 3.18
4577 11059 0.518636 CCGACAAATGTGTGGCTCAG 59.481 55.000 0.00 0.00 38.41 3.35
4580 11062 2.413112 CGACAAATGTGTGGCTCAGTAG 59.587 50.000 0.00 0.00 38.41 2.57
4585 11067 4.833478 AATGTGTGGCTCAGTAGAATCT 57.167 40.909 0.00 0.00 0.00 2.40
4618 11102 6.815142 TCATGTGTTGTCTAGAAGTCATCATG 59.185 38.462 0.00 6.40 0.00 3.07
4664 11150 1.367346 TGTAGGGATGCAAGTGGGAA 58.633 50.000 0.00 0.00 0.00 3.97
4665 11151 1.707989 TGTAGGGATGCAAGTGGGAAA 59.292 47.619 0.00 0.00 0.00 3.13
4667 11153 0.613012 AGGGATGCAAGTGGGAAAGC 60.613 55.000 0.00 0.00 0.00 3.51
4669 11155 0.968405 GGATGCAAGTGGGAAAGCAA 59.032 50.000 0.00 0.00 40.76 3.91
4671 11157 2.224257 GGATGCAAGTGGGAAAGCAAAA 60.224 45.455 0.00 0.00 40.76 2.44
4672 11158 2.307934 TGCAAGTGGGAAAGCAAAAC 57.692 45.000 0.00 0.00 33.48 2.43
4673 11159 1.134551 TGCAAGTGGGAAAGCAAAACC 60.135 47.619 0.00 0.00 33.48 3.27
4675 11161 1.136110 CAAGTGGGAAAGCAAAACCGT 59.864 47.619 0.00 0.00 0.00 4.83
4676 11162 0.744281 AGTGGGAAAGCAAAACCGTG 59.256 50.000 0.00 0.00 0.00 4.94
4677 11163 0.874175 GTGGGAAAGCAAAACCGTGC 60.874 55.000 0.00 0.00 45.28 5.34
4678 11164 1.300620 GGGAAAGCAAAACCGTGCC 60.301 57.895 0.00 0.00 46.14 5.01
4679 11165 1.739667 GGAAAGCAAAACCGTGCCT 59.260 52.632 0.00 0.00 46.14 4.75
4681 11167 0.668535 GAAAGCAAAACCGTGCCTCT 59.331 50.000 0.00 0.00 46.14 3.69
4682 11168 0.668535 AAAGCAAAACCGTGCCTCTC 59.331 50.000 0.00 0.00 46.14 3.20
4683 11169 0.179018 AAGCAAAACCGTGCCTCTCT 60.179 50.000 0.00 0.00 46.14 3.10
4684 11170 0.603975 AGCAAAACCGTGCCTCTCTC 60.604 55.000 0.00 0.00 46.14 3.20
4686 11172 1.151668 CAAAACCGTGCCTCTCTCTG 58.848 55.000 0.00 0.00 0.00 3.35
4687 11173 1.048601 AAAACCGTGCCTCTCTCTGA 58.951 50.000 0.00 0.00 0.00 3.27
4688 11174 1.048601 AAACCGTGCCTCTCTCTGAA 58.951 50.000 0.00 0.00 0.00 3.02
4690 11176 1.254284 ACCGTGCCTCTCTCTGAAGG 61.254 60.000 0.00 0.00 0.00 3.46
4691 11177 0.967887 CCGTGCCTCTCTCTGAAGGA 60.968 60.000 0.00 0.00 0.00 3.36
4692 11178 0.891373 CGTGCCTCTCTCTGAAGGAA 59.109 55.000 0.00 0.00 0.00 3.36
4693 11179 1.273606 CGTGCCTCTCTCTGAAGGAAA 59.726 52.381 0.00 0.00 0.00 3.13
4694 11180 2.289072 CGTGCCTCTCTCTGAAGGAAAA 60.289 50.000 0.00 0.00 0.00 2.29
4695 11181 3.744660 GTGCCTCTCTCTGAAGGAAAAA 58.255 45.455 0.00 0.00 0.00 1.94
4735 11221 0.517316 CCTTTTCCGAGAAAGGCACG 59.483 55.000 14.02 0.00 46.48 5.34
4736 11222 2.804911 CCTTTTCCGAGAAAGGCACGG 61.805 57.143 14.02 0.00 46.48 4.94
4741 11227 1.210931 CGAGAAAGGCACGGTCGTA 59.789 57.895 0.00 0.00 0.00 3.43
4742 11228 1.069378 CGAGAAAGGCACGGTCGTAC 61.069 60.000 0.00 0.00 0.00 3.67
4745 11231 0.735287 GAAAGGCACGGTCGTACCTC 60.735 60.000 14.73 1.70 40.77 3.85
4747 11233 1.593296 AAGGCACGGTCGTACCTCTC 61.593 60.000 14.73 0.00 40.77 3.20
4748 11234 2.099831 GCACGGTCGTACCTCTCG 59.900 66.667 0.00 0.00 35.66 4.04
4750 11236 1.134075 CACGGTCGTACCTCTCGTG 59.866 63.158 9.93 9.93 43.58 4.35
4751 11237 2.037136 ACGGTCGTACCTCTCGTGG 61.037 63.158 0.00 0.00 35.66 4.94
4752 11238 1.742880 CGGTCGTACCTCTCGTGGA 60.743 63.158 3.15 0.00 35.66 4.02
4753 11239 1.300971 CGGTCGTACCTCTCGTGGAA 61.301 60.000 3.15 0.00 35.66 3.53
4838 11804 3.181367 GCACAACCATGCCTCTCG 58.819 61.111 0.00 0.00 39.86 4.04
4839 11805 3.044059 GCACAACCATGCCTCTCGC 62.044 63.158 0.00 0.00 39.86 5.03
4840 11806 2.434884 ACAACCATGCCTCTCGCG 60.435 61.111 0.00 0.00 42.08 5.87
4841 11807 3.197790 CAACCATGCCTCTCGCGG 61.198 66.667 6.13 0.00 42.08 6.46
4842 11808 3.390521 AACCATGCCTCTCGCGGA 61.391 61.111 6.13 1.01 42.08 5.54
4843 11809 2.954684 AACCATGCCTCTCGCGGAA 61.955 57.895 6.13 0.00 42.08 4.30
4844 11810 2.587194 CCATGCCTCTCGCGGAAG 60.587 66.667 6.13 3.71 42.08 3.46
4856 11822 4.914291 CGGAAGCAAAACCGTGAC 57.086 55.556 0.00 0.00 43.53 3.67
4857 11823 2.317230 CGGAAGCAAAACCGTGACT 58.683 52.632 0.00 0.00 43.53 3.41
4858 11824 0.234884 CGGAAGCAAAACCGTGACTC 59.765 55.000 0.00 0.00 43.53 3.36
4859 11825 1.594331 GGAAGCAAAACCGTGACTCT 58.406 50.000 0.00 0.00 0.00 3.24
4860 11826 1.531578 GGAAGCAAAACCGTGACTCTC 59.468 52.381 0.00 0.00 0.00 3.20
4861 11827 1.192534 GAAGCAAAACCGTGACTCTCG 59.807 52.381 0.00 0.00 0.00 4.04
4862 11828 1.204312 GCAAAACCGTGACTCTCGC 59.796 57.895 0.00 0.00 0.00 5.03
4868 11834 2.202492 CGTGACTCTCGCGGAAGG 60.202 66.667 6.13 0.00 45.61 3.46
4869 11835 2.687805 CGTGACTCTCGCGGAAGGA 61.688 63.158 6.13 0.00 45.61 3.36
4870 11836 1.585006 GTGACTCTCGCGGAAGGAA 59.415 57.895 6.13 0.00 0.00 3.36
4871 11837 0.038526 GTGACTCTCGCGGAAGGAAA 60.039 55.000 6.13 0.00 0.00 3.13
4872 11838 0.677288 TGACTCTCGCGGAAGGAAAA 59.323 50.000 6.13 0.00 0.00 2.29
4873 11839 1.069513 TGACTCTCGCGGAAGGAAAAA 59.930 47.619 6.13 0.00 0.00 1.94
4913 11879 2.861006 GTTTTCGAGAGGCACGGC 59.139 61.111 0.00 0.00 0.00 5.68
4924 11890 3.017323 GCACGGCCATGATTCTCG 58.983 61.111 1.12 0.00 0.00 4.04
4925 11891 3.017323 CACGGCCATGATTCTCGC 58.983 61.111 2.24 0.00 0.00 5.03
4926 11892 2.586079 ACGGCCATGATTCTCGCG 60.586 61.111 2.24 0.00 0.00 5.87
4927 11893 2.279451 CGGCCATGATTCTCGCGA 60.279 61.111 9.26 9.26 0.00 5.87
4928 11894 1.882625 CGGCCATGATTCTCGCGAA 60.883 57.895 11.33 0.00 0.00 4.70
4929 11895 1.428370 CGGCCATGATTCTCGCGAAA 61.428 55.000 11.33 8.23 31.91 3.46
4930 11896 0.305922 GGCCATGATTCTCGCGAAAG 59.694 55.000 11.33 0.00 31.91 2.62
4942 11908 3.916439 CGAAAGCAAAACGGTGCC 58.084 55.556 4.59 0.00 46.14 5.01
4943 11909 1.358759 CGAAAGCAAAACGGTGCCT 59.641 52.632 4.59 0.00 46.14 4.75
4944 11910 0.660300 CGAAAGCAAAACGGTGCCTC 60.660 55.000 4.59 2.21 46.14 4.70
4945 11911 0.668535 GAAAGCAAAACGGTGCCTCT 59.331 50.000 4.59 0.00 46.14 3.69
4946 11912 0.668535 AAAGCAAAACGGTGCCTCTC 59.331 50.000 4.59 0.00 46.14 3.20
4947 11913 1.507141 AAGCAAAACGGTGCCTCTCG 61.507 55.000 4.59 0.00 46.14 4.04
4948 11914 2.556287 CAAAACGGTGCCTCTCGC 59.444 61.111 0.00 0.00 38.31 5.03
4949 11915 3.041940 AAAACGGTGCCTCTCGCG 61.042 61.111 0.00 0.00 42.08 5.87
4969 11935 3.269486 GGAAGCAAAACCGAAACTCTC 57.731 47.619 0.00 0.00 0.00 3.20
4971 11937 0.586802 AGCAAAACCGAAACTCTCGC 59.413 50.000 0.00 0.00 46.71 5.03
4972 11938 0.721483 GCAAAACCGAAACTCTCGCG 60.721 55.000 0.00 0.00 46.71 5.87
4977 11943 0.313043 ACCGAAACTCTCGCGAAAGA 59.687 50.000 17.91 7.21 46.71 2.52
5056 12022 9.726438 TTTTTGTTCAAAAATTAAGGAAGACCA 57.274 25.926 16.24 0.00 33.23 4.02
5059 12025 7.488322 TGTTCAAAAATTAAGGAAGACCAGTG 58.512 34.615 0.00 0.00 38.94 3.66
5062 12028 6.836527 TCAAAAATTAAGGAAGACCAGTGGAA 59.163 34.615 18.40 0.00 38.94 3.53
5063 12029 7.343316 TCAAAAATTAAGGAAGACCAGTGGAAA 59.657 33.333 18.40 0.00 38.94 3.13
5064 12030 7.669089 AAAATTAAGGAAGACCAGTGGAAAA 57.331 32.000 18.40 0.00 38.94 2.29
5065 12031 6.650427 AATTAAGGAAGACCAGTGGAAAAC 57.350 37.500 18.40 4.46 38.94 2.43
5066 12032 2.658807 AGGAAGACCAGTGGAAAACC 57.341 50.000 18.40 13.39 38.94 3.27
5067 12033 1.202770 AGGAAGACCAGTGGAAAACCG 60.203 52.381 18.40 0.00 38.94 4.44
5069 12035 2.567985 GAAGACCAGTGGAAAACCGAA 58.432 47.619 18.40 0.00 0.00 4.30
5070 12036 1.963172 AGACCAGTGGAAAACCGAAC 58.037 50.000 18.40 0.00 0.00 3.95
5072 12038 0.107557 ACCAGTGGAAAACCGAACGT 60.108 50.000 18.40 0.00 0.00 3.99
5076 12042 3.065095 CCAGTGGAAAACCGAACGTAAAA 59.935 43.478 1.68 0.00 0.00 1.52
5077 12043 4.438472 CCAGTGGAAAACCGAACGTAAAAA 60.438 41.667 1.68 0.00 0.00 1.94
5112 12078 6.927933 ATCATTTTAAAAGAAGGAAACGCG 57.072 33.333 3.53 3.53 0.00 6.01
5114 12080 5.683743 TCATTTTAAAAGAAGGAAACGCGTG 59.316 36.000 14.98 0.00 0.00 5.34
5115 12081 2.673976 TAAAAGAAGGAAACGCGTGC 57.326 45.000 14.98 8.39 0.00 5.34
5116 12082 0.316689 AAAAGAAGGAAACGCGTGCG 60.317 50.000 14.98 13.39 46.03 5.34
5117 12083 1.155424 AAAGAAGGAAACGCGTGCGA 61.155 50.000 22.32 0.00 42.83 5.10
5118 12084 1.155424 AAGAAGGAAACGCGTGCGAA 61.155 50.000 22.32 0.00 42.83 4.70
5119 12085 1.155424 AGAAGGAAACGCGTGCGAAA 61.155 50.000 22.32 0.00 42.83 3.46
5122 12088 1.155424 AGGAAACGCGTGCGAAAGAA 61.155 50.000 22.32 0.00 42.83 2.52
5123 12089 0.316360 GGAAACGCGTGCGAAAGAAA 60.316 50.000 22.32 0.00 42.83 2.52
5124 12090 1.458746 GAAACGCGTGCGAAAGAAAA 58.541 45.000 22.32 0.00 42.83 2.29
5152 12118 9.825972 ACAATTGTTTCATTAGATTACTCGTTG 57.174 29.630 4.92 0.00 0.00 4.10
5153 12119 8.788813 CAATTGTTTCATTAGATTACTCGTTGC 58.211 33.333 0.00 0.00 0.00 4.17
5155 12121 7.609760 TGTTTCATTAGATTACTCGTTGCAT 57.390 32.000 0.00 0.00 0.00 3.96
5156 12122 8.039603 TGTTTCATTAGATTACTCGTTGCATT 57.960 30.769 0.00 0.00 0.00 3.56
5158 12124 8.788813 GTTTCATTAGATTACTCGTTGCATTTG 58.211 33.333 0.00 0.00 0.00 2.32
5161 12127 8.892723 TCATTAGATTACTCGTTGCATTTGAAT 58.107 29.630 0.00 0.00 0.00 2.57
5162 12128 9.507280 CATTAGATTACTCGTTGCATTTGAATT 57.493 29.630 0.00 0.00 0.00 2.17
5165 12131 8.895932 AGATTACTCGTTGCATTTGAATTAAC 57.104 30.769 0.00 0.00 0.00 2.01
5166 12132 8.511321 AGATTACTCGTTGCATTTGAATTAACA 58.489 29.630 0.00 0.00 0.00 2.41
5167 12133 9.289303 GATTACTCGTTGCATTTGAATTAACAT 57.711 29.630 0.00 0.00 0.00 2.71
5168 12134 9.638239 ATTACTCGTTGCATTTGAATTAACATT 57.362 25.926 0.00 0.00 0.00 2.71
5169 12135 7.945033 ACTCGTTGCATTTGAATTAACATTT 57.055 28.000 0.00 0.00 0.00 2.32
5172 12138 8.136057 TCGTTGCATTTGAATTAACATTTTGT 57.864 26.923 0.00 0.00 0.00 2.83
5174 12140 9.855361 CGTTGCATTTGAATTAACATTTTGTAA 57.145 25.926 0.00 0.00 0.00 2.41
5219 12341 8.633561 TGATGTCAAACTAGACTAGTATGATGG 58.366 37.037 15.51 0.00 38.26 3.51
5220 12342 8.768501 ATGTCAAACTAGACTAGTATGATGGA 57.231 34.615 15.51 0.58 38.26 3.41
5221 12343 8.768501 TGTCAAACTAGACTAGTATGATGGAT 57.231 34.615 15.51 0.00 38.26 3.41
5286 12408 6.455913 GGCAACAATGATGATTATGTGTTTGC 60.456 38.462 0.00 0.00 0.00 3.68
5287 12409 6.091034 GCAACAATGATGATTATGTGTTTGCA 59.909 34.615 0.00 0.00 0.00 4.08
5288 12410 7.449827 CAACAATGATGATTATGTGTTTGCAC 58.550 34.615 0.00 0.00 45.44 4.57
5299 12421 3.408288 GTGTTTGCACACGACCTTAAA 57.592 42.857 0.00 0.00 44.01 1.52
5300 12422 3.760537 GTGTTTGCACACGACCTTAAAA 58.239 40.909 0.00 0.00 44.01 1.52
5301 12423 3.544682 GTGTTTGCACACGACCTTAAAAC 59.455 43.478 0.00 0.00 44.01 2.43
5302 12424 3.190744 TGTTTGCACACGACCTTAAAACA 59.809 39.130 0.00 0.00 34.62 2.83
5304 12426 2.357075 TGCACACGACCTTAAAACACA 58.643 42.857 0.00 0.00 0.00 3.72
5305 12427 2.747989 TGCACACGACCTTAAAACACAA 59.252 40.909 0.00 0.00 0.00 3.33
5306 12428 3.378742 TGCACACGACCTTAAAACACAAT 59.621 39.130 0.00 0.00 0.00 2.71
5309 12431 5.972382 GCACACGACCTTAAAACACAATAAA 59.028 36.000 0.00 0.00 0.00 1.40
5310 12432 6.141685 GCACACGACCTTAAAACACAATAAAG 59.858 38.462 0.00 0.00 0.00 1.85
5311 12433 6.141685 CACACGACCTTAAAACACAATAAAGC 59.858 38.462 0.00 0.00 0.00 3.51
5312 12434 5.338559 CACGACCTTAAAACACAATAAAGCG 59.661 40.000 0.00 0.00 0.00 4.68
5313 12435 4.319901 CGACCTTAAAACACAATAAAGCGC 59.680 41.667 0.00 0.00 0.00 5.92
5314 12436 4.552355 ACCTTAAAACACAATAAAGCGCC 58.448 39.130 2.29 0.00 0.00 6.53
5315 12437 4.038162 ACCTTAAAACACAATAAAGCGCCA 59.962 37.500 2.29 0.00 0.00 5.69
5316 12438 5.167845 CCTTAAAACACAATAAAGCGCCAT 58.832 37.500 2.29 0.00 0.00 4.40
5317 12439 5.288472 CCTTAAAACACAATAAAGCGCCATC 59.712 40.000 2.29 0.00 0.00 3.51
5318 12440 2.939460 AACACAATAAAGCGCCATCC 57.061 45.000 2.29 0.00 0.00 3.51
5319 12441 1.832883 ACACAATAAAGCGCCATCCA 58.167 45.000 2.29 0.00 0.00 3.41
5320 12442 1.745087 ACACAATAAAGCGCCATCCAG 59.255 47.619 2.29 0.00 0.00 3.86
5321 12443 2.016318 CACAATAAAGCGCCATCCAGA 58.984 47.619 2.29 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 0.179194 GAGATAGTATCGCCGCGTCC 60.179 60.000 13.39 1.91 0.00 4.79
70 71 0.179194 GGAGATAGTATCGCCGCGTC 60.179 60.000 16.04 1.44 39.44 5.19
71 72 1.874562 GGAGATAGTATCGCCGCGT 59.125 57.895 16.04 2.88 39.44 6.01
72 73 4.767633 GGAGATAGTATCGCCGCG 57.232 61.111 16.04 6.39 39.44 6.46
76 77 3.118956 CCTTCCATGGGAGATAGTATCGC 60.119 52.174 22.84 5.38 31.21 4.58
77 78 4.158764 GTCCTTCCATGGGAGATAGTATCG 59.841 50.000 22.84 1.76 33.04 2.92
78 79 5.337788 AGTCCTTCCATGGGAGATAGTATC 58.662 45.833 22.84 1.55 33.04 2.24
79 80 5.337788 GAGTCCTTCCATGGGAGATAGTAT 58.662 45.833 22.84 0.72 33.04 2.12
87 88 1.689233 CCCGAGTCCTTCCATGGGA 60.689 63.158 13.02 0.69 39.03 4.37
150 151 7.841956 TGTTTCCAAAGAAAATGTTCTACCAA 58.158 30.769 0.00 0.00 43.59 3.67
152 153 8.710835 TTTGTTTCCAAAGAAAATGTTCTACC 57.289 30.769 0.00 0.00 43.59 3.18
276 277 6.672147 ACTCAGTAGAAAACAATGTGCAATC 58.328 36.000 0.00 0.00 0.00 2.67
316 578 7.521585 CGATTTAACAACTTACTTTCCAAGCCT 60.522 37.037 0.00 0.00 0.00 4.58
331 593 8.073355 AGTGCATATAGCTACGATTTAACAAC 57.927 34.615 0.00 0.00 45.94 3.32
332 594 8.657074 AAGTGCATATAGCTACGATTTAACAA 57.343 30.769 0.00 0.00 45.94 2.83
333 595 8.657074 AAAGTGCATATAGCTACGATTTAACA 57.343 30.769 0.00 0.00 45.94 2.41
334 596 8.979574 AGAAAGTGCATATAGCTACGATTTAAC 58.020 33.333 0.00 0.00 45.94 2.01
341 603 6.422223 CCAAAAGAAAGTGCATATAGCTACG 58.578 40.000 0.00 0.00 45.94 3.51
352 614 6.139048 TGTTAAGTACCCAAAAGAAAGTGC 57.861 37.500 0.00 0.00 0.00 4.40
441 703 9.511272 AATCTCATGTATGATAGCAAAAGCATA 57.489 29.630 0.00 0.00 36.02 3.14
532 794 4.506255 CCCATCCCTCCCGTTGCC 62.506 72.222 0.00 0.00 0.00 4.52
604 866 2.035832 ACCGGTGCTGGATTTTTCAAAG 59.964 45.455 6.12 0.00 0.00 2.77
665 927 2.438795 GGCCGTAATTTGCCCGGA 60.439 61.111 0.73 0.00 44.41 5.14
679 941 4.538746 ATTAACCTATTCTAGCGAGGCC 57.461 45.455 0.00 0.00 33.28 5.19
717 3950 6.744993 CGAGTATGAATCGGAATGACTAGATG 59.255 42.308 0.00 0.00 36.54 2.90
850 4083 2.671070 CGTTCCAGCATCCCCACT 59.329 61.111 0.00 0.00 0.00 4.00
887 4121 3.416156 AGCCTTGGTCTAGAAGCAAAAG 58.584 45.455 0.00 0.00 44.32 2.27
892 4126 1.743996 CCAAGCCTTGGTCTAGAAGC 58.256 55.000 15.63 0.00 45.93 3.86
919 4161 1.405661 GGTGCTGCTAACTGGGAGTAC 60.406 57.143 0.00 0.00 38.89 2.73
920 4162 0.902531 GGTGCTGCTAACTGGGAGTA 59.097 55.000 0.00 0.00 0.00 2.59
921 4163 1.127567 TGGTGCTGCTAACTGGGAGT 61.128 55.000 0.00 0.00 0.00 3.85
922 4164 0.392193 CTGGTGCTGCTAACTGGGAG 60.392 60.000 0.00 0.00 0.00 4.30
923 4165 1.127567 ACTGGTGCTGCTAACTGGGA 61.128 55.000 0.00 0.00 0.00 4.37
924 4166 0.250901 AACTGGTGCTGCTAACTGGG 60.251 55.000 0.00 0.00 0.00 4.45
927 4169 0.890996 GCCAACTGGTGCTGCTAACT 60.891 55.000 0.00 0.00 37.57 2.24
928 4170 0.890996 AGCCAACTGGTGCTGCTAAC 60.891 55.000 0.00 0.00 36.23 2.34
929 4171 1.455849 AGCCAACTGGTGCTGCTAA 59.544 52.632 0.00 0.00 36.23 3.09
948 4477 5.915812 GTAGTACTAACTACGGACTAGGC 57.084 47.826 3.61 0.00 46.39 3.93
970 4499 3.069443 TCAGGCCAAACCAAAAAGCTTAG 59.931 43.478 5.01 0.00 43.14 2.18
971 4500 3.034635 TCAGGCCAAACCAAAAAGCTTA 58.965 40.909 5.01 0.00 43.14 3.09
972 4501 1.836802 TCAGGCCAAACCAAAAAGCTT 59.163 42.857 5.01 0.00 43.14 3.74
973 4502 1.494960 TCAGGCCAAACCAAAAAGCT 58.505 45.000 5.01 0.00 43.14 3.74
974 4503 2.416747 GATCAGGCCAAACCAAAAAGC 58.583 47.619 5.01 0.00 43.14 3.51
975 4504 2.295909 TCGATCAGGCCAAACCAAAAAG 59.704 45.455 5.01 0.00 43.14 2.27
1101 4634 1.305718 GGAGCCAGGAGAGAGTGGT 60.306 63.158 0.00 0.00 36.10 4.16
1121 4654 2.854777 GAGACGATTGTGGAGACGATTG 59.145 50.000 0.00 0.00 34.47 2.67
1122 4655 2.159226 GGAGACGATTGTGGAGACGATT 60.159 50.000 0.00 0.00 0.00 3.34
1123 4656 1.405821 GGAGACGATTGTGGAGACGAT 59.594 52.381 0.00 0.00 0.00 3.73
1124 4657 0.809385 GGAGACGATTGTGGAGACGA 59.191 55.000 0.00 0.00 0.00 4.20
1125 4658 3.330766 GGAGACGATTGTGGAGACG 57.669 57.895 0.00 0.00 0.00 4.18
1183 4716 2.266055 CTTGGCCGGAGTGGAGTC 59.734 66.667 5.05 0.00 42.00 3.36
1482 5027 0.107800 TGTCGGTTTGGTGGTCGAAA 60.108 50.000 0.00 0.00 33.33 3.46
1629 5177 4.811557 CAGAGGAATAATTGGAGGAACGTC 59.188 45.833 0.00 0.00 0.00 4.34
1719 5267 0.176219 CCGTGCTAATGTTCCCCGTA 59.824 55.000 0.00 0.00 0.00 4.02
1913 5495 2.346766 TCCATAGCGGTTGCATTCAT 57.653 45.000 0.00 0.00 46.23 2.57
1932 5514 1.153706 GCCGTACGTGCCACAGTAT 60.154 57.895 15.21 0.00 0.00 2.12
2148 5730 6.649141 TGCACTCACCGAATGTATTTATATCC 59.351 38.462 0.00 0.00 0.00 2.59
2165 5747 4.664677 ACTCCGCCGTGCACTCAC 62.665 66.667 16.19 2.83 39.78 3.51
2343 5925 4.189188 GCTGCAGCATCAAGGCCG 62.189 66.667 33.36 0.00 41.59 6.13
2381 5966 1.006878 AGGGAGTAGTAGAAAGCGGGT 59.993 52.381 0.00 0.00 0.00 5.28
2405 5990 9.944663 GAAAACTGTGACACTTATATTGAACAA 57.055 29.630 7.20 0.00 0.00 2.83
2406 5991 9.114952 TGAAAACTGTGACACTTATATTGAACA 57.885 29.630 7.20 0.00 0.00 3.18
2444 6029 9.906660 TCCAATAAAATAAGTGTAGCAGTTTTG 57.093 29.630 0.00 0.00 0.00 2.44
2447 6032 8.612619 CGATCCAATAAAATAAGTGTAGCAGTT 58.387 33.333 0.00 0.00 0.00 3.16
2448 6033 7.226720 CCGATCCAATAAAATAAGTGTAGCAGT 59.773 37.037 0.00 0.00 0.00 4.40
2449 6034 7.226720 ACCGATCCAATAAAATAAGTGTAGCAG 59.773 37.037 0.00 0.00 0.00 4.24
2450 6035 7.011950 CACCGATCCAATAAAATAAGTGTAGCA 59.988 37.037 0.00 0.00 0.00 3.49
2451 6036 7.352739 CACCGATCCAATAAAATAAGTGTAGC 58.647 38.462 0.00 0.00 0.00 3.58
2452 6037 7.041372 CCCACCGATCCAATAAAATAAGTGTAG 60.041 40.741 0.00 0.00 0.00 2.74
2453 6038 6.768861 CCCACCGATCCAATAAAATAAGTGTA 59.231 38.462 0.00 0.00 0.00 2.90
2454 6039 5.592688 CCCACCGATCCAATAAAATAAGTGT 59.407 40.000 0.00 0.00 0.00 3.55
2455 6040 5.825679 TCCCACCGATCCAATAAAATAAGTG 59.174 40.000 0.00 0.00 0.00 3.16
2456 6041 6.008696 TCCCACCGATCCAATAAAATAAGT 57.991 37.500 0.00 0.00 0.00 2.24
2457 6042 6.062095 ACTCCCACCGATCCAATAAAATAAG 58.938 40.000 0.00 0.00 0.00 1.73
2458 6043 6.008696 ACTCCCACCGATCCAATAAAATAA 57.991 37.500 0.00 0.00 0.00 1.40
2459 6044 5.640158 ACTCCCACCGATCCAATAAAATA 57.360 39.130 0.00 0.00 0.00 1.40
2460 6045 4.519906 ACTCCCACCGATCCAATAAAAT 57.480 40.909 0.00 0.00 0.00 1.82
2461 6046 4.472108 AGTACTCCCACCGATCCAATAAAA 59.528 41.667 0.00 0.00 0.00 1.52
2462 6047 4.035112 AGTACTCCCACCGATCCAATAAA 58.965 43.478 0.00 0.00 0.00 1.40
2463 6048 3.649843 AGTACTCCCACCGATCCAATAA 58.350 45.455 0.00 0.00 0.00 1.40
2464 6049 3.323774 AGTACTCCCACCGATCCAATA 57.676 47.619 0.00 0.00 0.00 1.90
2465 6050 2.176247 AGTACTCCCACCGATCCAAT 57.824 50.000 0.00 0.00 0.00 3.16
2472 6057 1.468736 GCGAAACTAGTACTCCCACCG 60.469 57.143 0.00 0.43 0.00 4.94
2525 6121 5.236478 ACCAACAGTAGAAACATGAAGAACG 59.764 40.000 0.00 0.00 0.00 3.95
2662 6436 7.224949 GCTTATGAGTAGGAGAACACAAATACC 59.775 40.741 0.00 0.00 0.00 2.73
2676 6450 3.551863 CGAGGCAGAAGCTTATGAGTAGG 60.552 52.174 24.73 5.37 41.70 3.18
2677 6451 3.637432 CGAGGCAGAAGCTTATGAGTAG 58.363 50.000 24.73 8.68 41.70 2.57
2693 6467 4.364415 TTGTATTTTAACCATGCGAGGC 57.636 40.909 0.00 0.00 0.00 4.70
2697 6471 7.254852 ACATACCTTTGTATTTTAACCATGCG 58.745 34.615 0.00 0.00 35.46 4.73
2773 6547 3.028850 CAGTTCAGATGGCCAAATGGAT 58.971 45.455 10.96 0.00 37.39 3.41
2862 7319 7.940178 AAATGACGAACCACCTAAATTTTTC 57.060 32.000 0.00 0.00 0.00 2.29
2866 7325 5.227152 GCAAAATGACGAACCACCTAAATT 58.773 37.500 0.00 0.00 0.00 1.82
2873 7332 2.327568 CATGGCAAAATGACGAACCAC 58.672 47.619 0.00 0.00 0.00 4.16
2880 7339 3.838795 CCACCCATGGCAAAATGAC 57.161 52.632 6.09 0.00 39.82 3.06
2918 7555 5.779529 AGCATAATACAAGCATGGGAAAG 57.220 39.130 0.00 0.00 0.00 2.62
2971 9303 3.058570 TGTCCGCACAATGTTATTGTCAC 60.059 43.478 4.32 0.46 0.00 3.67
2990 9322 7.272037 TCTCCATCTTTTGTTTTTACCTGTC 57.728 36.000 0.00 0.00 0.00 3.51
3144 9477 1.268184 CCGTCCGATCATGCATGTTTG 60.268 52.381 25.43 20.00 0.00 2.93
3268 9640 9.270640 CTAATATTCCCTAGAGATATGCAATGC 57.729 37.037 0.00 0.00 0.00 3.56
3547 9930 8.970859 AATCATCTGTAAATAGAAGGAACCAG 57.029 34.615 0.00 0.00 0.00 4.00
3748 10146 5.409643 GTTGGTTATCAACGATGATCCTG 57.590 43.478 11.84 0.00 42.75 3.86
3790 10188 3.314541 ACTCACTATGTTCCGACAACC 57.685 47.619 0.00 0.00 39.66 3.77
4089 10529 5.684626 GTCAATGCTTCAGAGTTTTGAACTG 59.315 40.000 0.00 0.00 43.03 3.16
4219 10684 7.804740 AAGCAAAACTTCATCTGGTGAACAGT 61.805 38.462 0.00 0.00 41.79 3.55
4220 10685 5.450965 AAGCAAAACTTCATCTGGTGAACAG 60.451 40.000 0.00 0.00 41.79 3.16
4221 10686 3.953612 AGCAAAACTTCATCTGGTGAACA 59.046 39.130 0.00 0.00 41.79 3.18
4316 10785 6.605594 AGTGAAGTACTTCCATTCTCTAGGAG 59.394 42.308 28.43 0.00 35.67 3.69
4398 10873 6.878923 TGTCAAAGTCGGAATATCATTTCTGT 59.121 34.615 0.00 0.00 34.29 3.41
4419 10897 8.143193 TCTCGGTAAGTGTAAAACTATTTGTCA 58.857 33.333 0.00 0.00 38.56 3.58
4514 10993 4.776349 TGGGAAATAGCGTGTGATACATT 58.224 39.130 0.00 0.00 0.00 2.71
4526 11005 8.891720 TGCAATTATTTGAAAATGGGAAATAGC 58.108 29.630 1.55 0.00 34.60 2.97
4531 11010 7.222872 AGTGTGCAATTATTTGAAAATGGGAA 58.777 30.769 1.55 0.00 34.60 3.97
4533 11012 7.064490 GGTAGTGTGCAATTATTTGAAAATGGG 59.936 37.037 1.55 0.00 34.60 4.00
4540 11019 4.998033 TGTCGGTAGTGTGCAATTATTTGA 59.002 37.500 1.55 0.00 34.60 2.69
4541 11020 5.289917 TGTCGGTAGTGTGCAATTATTTG 57.710 39.130 0.00 0.00 35.85 2.32
4545 11027 4.757657 ACATTTGTCGGTAGTGTGCAATTA 59.242 37.500 0.00 0.00 0.00 1.40
4548 11030 2.289274 CACATTTGTCGGTAGTGTGCAA 59.711 45.455 0.00 0.00 34.50 4.08
4553 11035 1.196808 GCCACACATTTGTCGGTAGTG 59.803 52.381 0.00 0.00 31.66 2.74
4562 11044 4.940046 AGATTCTACTGAGCCACACATTTG 59.060 41.667 0.00 0.00 0.00 2.32
4564 11046 4.833478 AGATTCTACTGAGCCACACATT 57.167 40.909 0.00 0.00 0.00 2.71
4604 11088 7.606858 ACACATTCAACATGATGACTTCTAG 57.393 36.000 4.98 0.00 0.00 2.43
4647 11132 1.340991 GCTTTCCCACTTGCATCCCTA 60.341 52.381 0.00 0.00 0.00 3.53
4654 11140 1.581934 GGTTTTGCTTTCCCACTTGC 58.418 50.000 0.00 0.00 0.00 4.01
4664 11150 0.179018 AGAGAGGCACGGTTTTGCTT 60.179 50.000 0.00 0.00 42.56 3.91
4665 11151 0.603975 GAGAGAGGCACGGTTTTGCT 60.604 55.000 0.00 0.00 42.56 3.91
4667 11153 1.151668 CAGAGAGAGGCACGGTTTTG 58.848 55.000 0.00 0.00 0.00 2.44
4669 11155 1.001406 CTTCAGAGAGAGGCACGGTTT 59.999 52.381 0.00 0.00 0.00 3.27
4671 11157 1.254284 CCTTCAGAGAGAGGCACGGT 61.254 60.000 0.00 0.00 0.00 4.83
4672 11158 0.967887 TCCTTCAGAGAGAGGCACGG 60.968 60.000 0.00 0.00 0.00 4.94
4673 11159 0.891373 TTCCTTCAGAGAGAGGCACG 59.109 55.000 0.00 0.00 0.00 5.34
4723 11209 1.069378 GTACGACCGTGCCTTTCTCG 61.069 60.000 5.20 0.00 0.00 4.04
4724 11210 0.735287 GGTACGACCGTGCCTTTCTC 60.735 60.000 19.75 0.00 45.50 2.87
4725 11211 1.291272 GGTACGACCGTGCCTTTCT 59.709 57.895 19.75 0.00 45.50 2.52
4726 11212 3.866356 GGTACGACCGTGCCTTTC 58.134 61.111 19.75 0.00 45.50 2.62
4731 11217 2.099831 CGAGAGGTACGACCGTGC 59.900 66.667 5.20 3.57 44.90 5.34
4733 11219 2.037136 CCACGAGAGGTACGACCGT 61.037 63.158 0.00 0.00 44.90 4.83
4734 11220 1.300971 TTCCACGAGAGGTACGACCG 61.301 60.000 0.00 0.00 44.90 4.79
4735 11221 0.450983 CTTCCACGAGAGGTACGACC 59.549 60.000 0.00 0.00 38.99 4.79
4736 11222 1.446907 TCTTCCACGAGAGGTACGAC 58.553 55.000 0.00 0.00 34.70 4.34
4738 11224 3.293311 TTTTCTTCCACGAGAGGTACG 57.707 47.619 0.00 0.00 0.00 3.67
4783 11749 0.941542 CGTGCCTCTCGGAAACAAAA 59.058 50.000 0.00 0.00 0.00 2.44
4784 11750 2.612200 CGTGCCTCTCGGAAACAAA 58.388 52.632 0.00 0.00 0.00 2.83
4796 11762 3.665675 GAGAATCACGGCCGTGCCT 62.666 63.158 45.55 38.11 45.04 4.75
4797 11763 3.195698 GAGAATCACGGCCGTGCC 61.196 66.667 45.55 34.95 45.04 5.01
4798 11764 3.554692 CGAGAATCACGGCCGTGC 61.555 66.667 45.55 33.58 45.04 5.34
4799 11765 3.554692 GCGAGAATCACGGCCGTG 61.555 66.667 45.04 45.04 46.64 4.94
4801 11767 4.847516 TCGCGAGAATCACGGCCG 62.848 66.667 26.86 26.86 41.71 6.13
4802 11768 2.508439 TTCGCGAGAATCACGGCC 60.508 61.111 9.59 0.00 46.92 6.13
4811 11777 0.602638 ATGGTTGTGCTTTCGCGAGA 60.603 50.000 9.59 3.35 39.65 4.04
4812 11778 0.453282 CATGGTTGTGCTTTCGCGAG 60.453 55.000 9.59 0.00 39.65 5.03
4813 11779 1.573932 CATGGTTGTGCTTTCGCGA 59.426 52.632 3.71 3.71 39.65 5.87
4814 11780 2.082366 GCATGGTTGTGCTTTCGCG 61.082 57.895 0.00 0.00 41.82 5.87
4815 11781 1.734117 GGCATGGTTGTGCTTTCGC 60.734 57.895 0.00 0.00 44.45 4.70
4816 11782 0.109597 GAGGCATGGTTGTGCTTTCG 60.110 55.000 0.00 0.00 44.45 3.46
4817 11783 1.200948 GAGAGGCATGGTTGTGCTTTC 59.799 52.381 0.00 0.00 44.45 2.62
4818 11784 1.251251 GAGAGGCATGGTTGTGCTTT 58.749 50.000 0.00 0.00 44.45 3.51
4819 11785 0.957395 CGAGAGGCATGGTTGTGCTT 60.957 55.000 0.00 0.00 44.45 3.91
4820 11786 1.376424 CGAGAGGCATGGTTGTGCT 60.376 57.895 0.00 0.00 44.45 4.40
4821 11787 3.044059 GCGAGAGGCATGGTTGTGC 62.044 63.158 0.00 0.00 44.31 4.57
4822 11788 2.743752 CGCGAGAGGCATGGTTGTG 61.744 63.158 0.00 0.00 43.84 3.33
4823 11789 2.434884 CGCGAGAGGCATGGTTGT 60.435 61.111 0.00 0.00 43.84 3.32
4824 11790 3.197790 CCGCGAGAGGCATGGTTG 61.198 66.667 8.23 0.00 43.84 3.77
4825 11791 2.859273 CTTCCGCGAGAGGCATGGTT 62.859 60.000 8.23 0.00 43.84 3.67
4826 11792 3.376935 CTTCCGCGAGAGGCATGGT 62.377 63.158 8.23 0.00 43.84 3.55
4827 11793 2.587194 CTTCCGCGAGAGGCATGG 60.587 66.667 8.23 0.00 43.84 3.66
4828 11794 3.267860 GCTTCCGCGAGAGGCATG 61.268 66.667 20.89 0.00 46.54 4.06
4832 11798 1.497722 GTTTTGCTTCCGCGAGAGG 59.502 57.895 8.23 4.88 39.65 3.69
4833 11799 1.497722 GGTTTTGCTTCCGCGAGAG 59.502 57.895 8.23 5.93 39.65 3.20
4834 11800 2.314647 CGGTTTTGCTTCCGCGAGA 61.315 57.895 8.23 0.00 40.28 4.04
4835 11801 2.173382 CGGTTTTGCTTCCGCGAG 59.827 61.111 8.23 0.00 40.28 5.03
4840 11806 1.531578 GAGAGTCACGGTTTTGCTTCC 59.468 52.381 0.00 0.00 0.00 3.46
4841 11807 1.192534 CGAGAGTCACGGTTTTGCTTC 59.807 52.381 1.62 0.00 0.00 3.86
4842 11808 1.217882 CGAGAGTCACGGTTTTGCTT 58.782 50.000 1.62 0.00 0.00 3.91
4843 11809 1.222115 GCGAGAGTCACGGTTTTGCT 61.222 55.000 11.95 0.00 0.00 3.91
4844 11810 1.204312 GCGAGAGTCACGGTTTTGC 59.796 57.895 11.95 0.00 0.00 3.68
4845 11811 1.487231 CGCGAGAGTCACGGTTTTG 59.513 57.895 11.95 0.00 0.00 2.44
4846 11812 1.663702 CCGCGAGAGTCACGGTTTT 60.664 57.895 8.23 0.00 42.01 2.43
4847 11813 2.049433 CCGCGAGAGTCACGGTTT 60.049 61.111 8.23 0.00 42.01 3.27
4848 11814 2.473664 CTTCCGCGAGAGTCACGGTT 62.474 60.000 8.23 0.00 46.92 4.44
4849 11815 2.979197 CTTCCGCGAGAGTCACGGT 61.979 63.158 8.23 0.00 46.92 4.83
4851 11817 2.196382 TTCCTTCCGCGAGAGTCACG 62.196 60.000 8.23 5.53 0.00 4.35
4852 11818 0.038526 TTTCCTTCCGCGAGAGTCAC 60.039 55.000 8.23 0.00 0.00 3.67
4853 11819 0.677288 TTTTCCTTCCGCGAGAGTCA 59.323 50.000 8.23 0.00 0.00 3.41
4854 11820 1.792006 TTTTTCCTTCCGCGAGAGTC 58.208 50.000 8.23 0.00 0.00 3.36
4890 11856 2.285950 CGTGCCTCTCGAAAACGAAAAA 60.286 45.455 0.00 0.00 36.38 1.94
4891 11857 1.259507 CGTGCCTCTCGAAAACGAAAA 59.740 47.619 0.00 0.00 36.38 2.29
4892 11858 0.856641 CGTGCCTCTCGAAAACGAAA 59.143 50.000 0.00 0.00 36.38 3.46
4893 11859 0.942410 CCGTGCCTCTCGAAAACGAA 60.942 55.000 0.00 0.00 36.38 3.85
4894 11860 1.372499 CCGTGCCTCTCGAAAACGA 60.372 57.895 0.00 0.00 36.38 3.85
4895 11861 3.011760 GCCGTGCCTCTCGAAAACG 62.012 63.158 0.00 0.00 0.00 3.60
4896 11862 2.677979 GGCCGTGCCTCTCGAAAAC 61.678 63.158 7.58 0.00 46.69 2.43
4897 11863 2.358247 GGCCGTGCCTCTCGAAAA 60.358 61.111 7.58 0.00 46.69 2.29
4903 11869 3.519485 GAGAATCATGGCCGTGCCTCT 62.519 57.143 20.86 21.52 42.36 3.69
4904 11870 1.162800 GAGAATCATGGCCGTGCCTC 61.163 60.000 20.86 19.76 42.36 4.70
4905 11871 1.153086 GAGAATCATGGCCGTGCCT 60.153 57.895 20.86 15.84 42.36 4.75
4906 11872 2.537560 CGAGAATCATGGCCGTGCC 61.538 63.158 20.86 11.39 42.25 5.01
4907 11873 3.017323 CGAGAATCATGGCCGTGC 58.983 61.111 20.86 6.51 33.17 5.34
4908 11874 2.874694 CGCGAGAATCATGGCCGTG 61.875 63.158 19.62 19.62 33.17 4.94
4909 11875 2.572095 TTCGCGAGAATCATGGCCGT 62.572 55.000 9.59 0.00 46.92 5.68
4910 11876 1.882625 TTCGCGAGAATCATGGCCG 60.883 57.895 9.59 0.00 46.92 6.13
4911 11877 4.124910 TTCGCGAGAATCATGGCC 57.875 55.556 9.59 0.00 46.92 5.36
4920 11886 1.155424 ACCGTTTTGCTTTCGCGAGA 61.155 50.000 9.59 3.35 39.65 4.04
4921 11887 0.991770 CACCGTTTTGCTTTCGCGAG 60.992 55.000 9.59 0.00 39.65 5.03
4922 11888 1.010574 CACCGTTTTGCTTTCGCGA 60.011 52.632 3.71 3.71 39.65 5.87
4923 11889 2.635305 GCACCGTTTTGCTTTCGCG 61.635 57.895 0.00 0.00 39.59 5.87
4924 11890 2.300066 GGCACCGTTTTGCTTTCGC 61.300 57.895 1.50 0.00 42.56 4.70
4925 11891 0.660300 GAGGCACCGTTTTGCTTTCG 60.660 55.000 1.50 0.00 42.56 3.46
4926 11892 0.668535 AGAGGCACCGTTTTGCTTTC 59.331 50.000 1.50 1.12 42.56 2.62
4927 11893 0.668535 GAGAGGCACCGTTTTGCTTT 59.331 50.000 1.50 0.00 42.56 3.51
4928 11894 1.507141 CGAGAGGCACCGTTTTGCTT 61.507 55.000 1.50 0.00 42.56 3.91
4929 11895 1.961277 CGAGAGGCACCGTTTTGCT 60.961 57.895 1.50 0.00 42.56 3.91
4930 11896 2.556287 CGAGAGGCACCGTTTTGC 59.444 61.111 0.00 0.00 42.18 3.68
4931 11897 2.556287 GCGAGAGGCACCGTTTTG 59.444 61.111 0.00 0.00 42.87 2.44
4932 11898 3.041940 CGCGAGAGGCACCGTTTT 61.042 61.111 0.00 0.00 43.84 2.43
4941 11907 1.497722 GTTTTGCTTCCGCGAGAGG 59.502 57.895 8.23 4.88 39.65 3.69
4942 11908 1.497722 GGTTTTGCTTCCGCGAGAG 59.502 57.895 8.23 5.93 39.65 3.20
4943 11909 2.314647 CGGTTTTGCTTCCGCGAGA 61.315 57.895 8.23 0.00 40.28 4.04
4944 11910 1.837538 TTCGGTTTTGCTTCCGCGAG 61.838 55.000 8.23 0.00 45.44 5.03
4945 11911 1.437772 TTTCGGTTTTGCTTCCGCGA 61.438 50.000 8.23 0.00 45.44 5.87
4946 11912 1.009449 TTTCGGTTTTGCTTCCGCG 60.009 52.632 0.00 0.00 45.44 6.46
4947 11913 0.030235 AGTTTCGGTTTTGCTTCCGC 59.970 50.000 0.00 0.00 45.44 5.54
4948 11914 1.602377 AGAGTTTCGGTTTTGCTTCCG 59.398 47.619 0.00 0.00 46.93 4.30
4949 11915 2.349532 CGAGAGTTTCGGTTTTGCTTCC 60.350 50.000 0.00 0.00 45.54 3.46
4950 11916 2.904915 CGAGAGTTTCGGTTTTGCTTC 58.095 47.619 0.00 0.00 45.54 3.86
5030 11996 9.726438 TGGTCTTCCTTAATTTTTGAACAAAAA 57.274 25.926 21.84 21.84 42.44 1.94
5031 11997 9.377312 CTGGTCTTCCTTAATTTTTGAACAAAA 57.623 29.630 8.37 8.37 35.27 2.44
5032 11998 8.536175 ACTGGTCTTCCTTAATTTTTGAACAAA 58.464 29.630 0.00 0.00 34.23 2.83
5033 11999 7.978975 CACTGGTCTTCCTTAATTTTTGAACAA 59.021 33.333 0.00 0.00 34.23 2.83
5034 12000 7.417342 CCACTGGTCTTCCTTAATTTTTGAACA 60.417 37.037 0.00 0.00 34.23 3.18
5035 12001 6.923508 CCACTGGTCTTCCTTAATTTTTGAAC 59.076 38.462 0.00 0.00 34.23 3.18
5036 12002 6.836527 TCCACTGGTCTTCCTTAATTTTTGAA 59.163 34.615 0.00 0.00 34.23 2.69
5037 12003 6.369629 TCCACTGGTCTTCCTTAATTTTTGA 58.630 36.000 0.00 0.00 34.23 2.69
5038 12004 6.648879 TCCACTGGTCTTCCTTAATTTTTG 57.351 37.500 0.00 0.00 34.23 2.44
5040 12006 7.418597 GGTTTTCCACTGGTCTTCCTTAATTTT 60.419 37.037 0.00 0.00 40.31 1.82
5042 12008 5.538813 GGTTTTCCACTGGTCTTCCTTAATT 59.461 40.000 0.00 0.00 40.31 1.40
5043 12009 5.077564 GGTTTTCCACTGGTCTTCCTTAAT 58.922 41.667 0.00 0.00 40.31 1.40
5044 12010 4.466827 GGTTTTCCACTGGTCTTCCTTAA 58.533 43.478 0.00 0.00 40.31 1.85
5045 12011 3.495453 CGGTTTTCCACTGGTCTTCCTTA 60.495 47.826 0.00 0.00 40.70 2.69
5046 12012 2.748465 CGGTTTTCCACTGGTCTTCCTT 60.748 50.000 0.00 0.00 40.70 3.36
5047 12013 1.202770 CGGTTTTCCACTGGTCTTCCT 60.203 52.381 0.00 0.00 40.70 3.36
5048 12014 1.202722 TCGGTTTTCCACTGGTCTTCC 60.203 52.381 0.00 0.00 40.70 3.46
5049 12015 2.249844 TCGGTTTTCCACTGGTCTTC 57.750 50.000 0.00 0.00 40.70 2.87
5050 12016 2.294979 GTTCGGTTTTCCACTGGTCTT 58.705 47.619 0.00 0.00 40.70 3.01
5051 12017 1.808891 CGTTCGGTTTTCCACTGGTCT 60.809 52.381 0.00 0.00 40.70 3.85
5052 12018 0.584876 CGTTCGGTTTTCCACTGGTC 59.415 55.000 0.00 0.00 40.70 4.02
5053 12019 0.107557 ACGTTCGGTTTTCCACTGGT 60.108 50.000 0.00 0.00 40.70 4.00
5055 12021 3.948196 TTTACGTTCGGTTTTCCACTG 57.052 42.857 0.00 0.00 40.70 3.66
5056 12022 4.961435 TTTTTACGTTCGGTTTTCCACT 57.039 36.364 0.00 0.00 40.70 4.00
5085 12051 9.929722 GCGTTTCCTTCTTTTAAAATGATTTTT 57.070 25.926 8.60 0.00 38.56 1.94
5086 12052 8.272866 CGCGTTTCCTTCTTTTAAAATGATTTT 58.727 29.630 8.35 8.35 36.67 1.82
5087 12053 7.436970 ACGCGTTTCCTTCTTTTAAAATGATTT 59.563 29.630 5.58 0.00 0.00 2.17
5088 12054 6.921307 ACGCGTTTCCTTCTTTTAAAATGATT 59.079 30.769 5.58 0.00 0.00 2.57
5089 12055 6.362283 CACGCGTTTCCTTCTTTTAAAATGAT 59.638 34.615 10.22 0.00 0.00 2.45
5090 12056 5.683743 CACGCGTTTCCTTCTTTTAAAATGA 59.316 36.000 10.22 0.00 0.00 2.57
5091 12057 5.609483 GCACGCGTTTCCTTCTTTTAAAATG 60.609 40.000 10.22 0.00 0.00 2.32
5092 12058 4.443063 GCACGCGTTTCCTTCTTTTAAAAT 59.557 37.500 10.22 0.00 0.00 1.82
5093 12059 3.792421 GCACGCGTTTCCTTCTTTTAAAA 59.208 39.130 10.22 0.00 0.00 1.52
5094 12060 3.364946 GCACGCGTTTCCTTCTTTTAAA 58.635 40.909 10.22 0.00 0.00 1.52
5095 12061 2.600320 CGCACGCGTTTCCTTCTTTTAA 60.600 45.455 10.22 0.00 34.35 1.52
5097 12063 0.316689 CGCACGCGTTTCCTTCTTTT 60.317 50.000 10.22 0.00 34.35 2.27
5099 12065 1.155424 TTCGCACGCGTTTCCTTCTT 61.155 50.000 10.22 0.00 40.74 2.52
5100 12066 1.155424 TTTCGCACGCGTTTCCTTCT 61.155 50.000 10.22 0.00 40.74 2.85
5101 12067 0.721483 CTTTCGCACGCGTTTCCTTC 60.721 55.000 10.22 0.00 40.74 3.46
5102 12068 1.155424 TCTTTCGCACGCGTTTCCTT 61.155 50.000 10.22 0.00 40.74 3.36
5103 12069 1.155424 TTCTTTCGCACGCGTTTCCT 61.155 50.000 10.22 0.00 40.74 3.36
5104 12070 0.316360 TTTCTTTCGCACGCGTTTCC 60.316 50.000 10.22 0.00 40.74 3.13
5105 12071 1.458746 TTTTCTTTCGCACGCGTTTC 58.541 45.000 10.22 3.09 40.74 2.78
5106 12072 1.897641 TTTTTCTTTCGCACGCGTTT 58.102 40.000 10.22 0.00 40.74 3.60
5126 12092 9.825972 CAACGAGTAATCTAATGAAACAATTGT 57.174 29.630 4.92 4.92 0.00 2.71
5127 12093 8.788813 GCAACGAGTAATCTAATGAAACAATTG 58.211 33.333 3.24 3.24 0.00 2.32
5129 12095 8.039603 TGCAACGAGTAATCTAATGAAACAAT 57.960 30.769 0.00 0.00 0.00 2.71
5130 12096 7.428282 TGCAACGAGTAATCTAATGAAACAA 57.572 32.000 0.00 0.00 0.00 2.83
5131 12097 7.609760 ATGCAACGAGTAATCTAATGAAACA 57.390 32.000 0.00 0.00 0.00 2.83
5132 12098 8.788813 CAAATGCAACGAGTAATCTAATGAAAC 58.211 33.333 0.00 0.00 0.00 2.78
5134 12100 8.262715 TCAAATGCAACGAGTAATCTAATGAA 57.737 30.769 0.00 0.00 0.00 2.57
5135 12101 7.841915 TCAAATGCAACGAGTAATCTAATGA 57.158 32.000 0.00 0.00 0.00 2.57
5139 12105 9.982291 GTTAATTCAAATGCAACGAGTAATCTA 57.018 29.630 0.00 0.00 0.00 1.98
5140 12106 8.511321 TGTTAATTCAAATGCAACGAGTAATCT 58.489 29.630 0.00 0.00 0.00 2.40
5141 12107 8.667987 TGTTAATTCAAATGCAACGAGTAATC 57.332 30.769 0.00 0.00 0.00 1.75
5142 12108 9.638239 AATGTTAATTCAAATGCAACGAGTAAT 57.362 25.926 0.00 0.00 0.00 1.89
5143 12109 9.469807 AAATGTTAATTCAAATGCAACGAGTAA 57.530 25.926 0.00 0.00 0.00 2.24
5144 12110 9.469807 AAAATGTTAATTCAAATGCAACGAGTA 57.530 25.926 0.00 0.00 0.00 2.59
5145 12111 7.945033 AAATGTTAATTCAAATGCAACGAGT 57.055 28.000 0.00 0.00 0.00 4.18
5146 12112 8.274939 ACAAAATGTTAATTCAAATGCAACGAG 58.725 29.630 0.00 0.00 0.00 4.18
5147 12113 8.136057 ACAAAATGTTAATTCAAATGCAACGA 57.864 26.923 0.00 0.00 0.00 3.85
5148 12114 9.855361 TTACAAAATGTTAATTCAAATGCAACG 57.145 25.926 0.00 0.00 0.00 4.10
5180 12146 9.681692 CTAGTTTGACATCAAATGATTCAACAA 57.318 29.630 10.11 8.00 46.12 2.83
5181 12147 9.065798 TCTAGTTTGACATCAAATGATTCAACA 57.934 29.630 10.11 8.33 46.12 3.33
5182 12148 9.334693 GTCTAGTTTGACATCAAATGATTCAAC 57.665 33.333 10.11 11.82 46.12 3.18
5183 12149 9.288576 AGTCTAGTTTGACATCAAATGATTCAA 57.711 29.630 10.11 12.69 46.12 2.69
5184 12150 8.853077 AGTCTAGTTTGACATCAAATGATTCA 57.147 30.769 10.11 0.00 46.12 2.57
5186 12152 9.950496 ACTAGTCTAGTTTGACATCAAATGATT 57.050 29.630 6.71 8.50 46.12 2.57
5193 12159 8.633561 CCATCATACTAGTCTAGTTTGACATCA 58.366 37.037 26.06 11.33 45.15 3.07
5255 12377 7.062956 CACATAATCATCATTGTTGCCATATGC 59.937 37.037 0.00 0.00 41.77 3.14
5256 12378 8.085909 ACACATAATCATCATTGTTGCCATATG 58.914 33.333 0.00 0.00 0.00 1.78
5257 12379 8.185506 ACACATAATCATCATTGTTGCCATAT 57.814 30.769 0.00 0.00 0.00 1.78
5258 12380 7.585579 ACACATAATCATCATTGTTGCCATA 57.414 32.000 0.00 0.00 0.00 2.74
5261 12383 6.455913 GCAAACACATAATCATCATTGTTGCC 60.456 38.462 0.00 0.00 0.00 4.52
5262 12384 6.091034 TGCAAACACATAATCATCATTGTTGC 59.909 34.615 0.00 0.00 0.00 4.17
5263 12385 7.449827 GTGCAAACACATAATCATCATTGTTG 58.550 34.615 0.00 0.00 46.61 3.33
5264 12386 7.585286 GTGCAAACACATAATCATCATTGTT 57.415 32.000 0.00 0.00 46.61 2.83
5280 12402 3.190744 TGTTTTAAGGTCGTGTGCAAACA 59.809 39.130 8.00 0.00 31.84 2.83
5282 12404 3.190744 TGTGTTTTAAGGTCGTGTGCAAA 59.809 39.130 0.00 0.00 0.00 3.68
5284 12406 2.357075 TGTGTTTTAAGGTCGTGTGCA 58.643 42.857 0.00 0.00 0.00 4.57
5286 12408 6.141685 GCTTTATTGTGTTTTAAGGTCGTGTG 59.858 38.462 0.00 0.00 0.00 3.82
5287 12409 6.203647 GCTTTATTGTGTTTTAAGGTCGTGT 58.796 36.000 0.00 0.00 0.00 4.49
5288 12410 5.338559 CGCTTTATTGTGTTTTAAGGTCGTG 59.661 40.000 0.00 0.00 0.00 4.35
5290 12412 4.319901 GCGCTTTATTGTGTTTTAAGGTCG 59.680 41.667 0.00 0.00 0.00 4.79
5291 12413 4.619760 GGCGCTTTATTGTGTTTTAAGGTC 59.380 41.667 7.64 0.00 0.00 3.85
5292 12414 4.038162 TGGCGCTTTATTGTGTTTTAAGGT 59.962 37.500 7.64 0.00 0.00 3.50
5293 12415 4.551388 TGGCGCTTTATTGTGTTTTAAGG 58.449 39.130 7.64 0.00 0.00 2.69
5294 12416 5.288472 GGATGGCGCTTTATTGTGTTTTAAG 59.712 40.000 7.64 0.00 0.00 1.85
5295 12417 5.164954 GGATGGCGCTTTATTGTGTTTTAA 58.835 37.500 7.64 0.00 0.00 1.52
5296 12418 4.218635 TGGATGGCGCTTTATTGTGTTTTA 59.781 37.500 7.64 0.00 0.00 1.52
5297 12419 3.006323 TGGATGGCGCTTTATTGTGTTTT 59.994 39.130 7.64 0.00 0.00 2.43
5298 12420 2.560542 TGGATGGCGCTTTATTGTGTTT 59.439 40.909 7.64 0.00 0.00 2.83
5299 12421 2.164219 CTGGATGGCGCTTTATTGTGTT 59.836 45.455 7.64 0.00 0.00 3.32
5300 12422 1.745087 CTGGATGGCGCTTTATTGTGT 59.255 47.619 7.64 0.00 0.00 3.72
5301 12423 2.016318 TCTGGATGGCGCTTTATTGTG 58.984 47.619 7.64 0.00 0.00 3.33
5302 12424 2.418368 TCTGGATGGCGCTTTATTGT 57.582 45.000 7.64 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.