Multiple sequence alignment - TraesCS2B01G103400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G103400 chr2B 100.000 4503 0 0 1 4503 64189780 64194282 0.000000e+00 8316.0
1 TraesCS2B01G103400 chr2B 86.359 2705 306 31 1138 3818 63865185 63862520 0.000000e+00 2892.0
2 TraesCS2B01G103400 chr2B 87.798 2139 232 16 1350 3466 64091421 64089290 0.000000e+00 2477.0
3 TraesCS2B01G103400 chr2B 93.958 331 18 2 3489 3818 64089306 64088977 2.420000e-137 499.0
4 TraesCS2B01G103400 chr2B 79.506 405 51 26 899 1293 64091833 64091451 4.470000e-65 259.0
5 TraesCS2B01G103400 chr2B 89.109 202 15 3 4309 4503 63860531 63860330 1.250000e-60 244.0
6 TraesCS2B01G103400 chr2B 93.617 141 9 0 4340 4480 64087256 64087116 1.270000e-50 211.0
7 TraesCS2B01G103400 chr2B 85.946 185 22 1 4323 4503 64099410 64099594 1.280000e-45 195.0
8 TraesCS2B01G103400 chr2D 87.520 3734 379 44 120 3818 36884992 36888673 0.000000e+00 4233.0
9 TraesCS2B01G103400 chr2D 86.806 2721 299 32 1123 3818 36910956 36913641 0.000000e+00 2981.0
10 TraesCS2B01G103400 chr2D 89.455 275 25 3 4041 4312 112871222 112870949 1.200000e-90 344.0
11 TraesCS2B01G103400 chr2D 85.973 221 27 3 3835 4054 36915194 36915411 2.710000e-57 233.0
12 TraesCS2B01G103400 chr2D 85.520 221 28 3 3835 4054 36890227 36890444 1.260000e-55 228.0
13 TraesCS2B01G103400 chr2D 82.203 118 15 4 4369 4486 36909384 36909273 3.710000e-16 97.1
14 TraesCS2B01G103400 chr2A 86.999 2346 263 26 1138 3461 41620342 41622667 0.000000e+00 2604.0
15 TraesCS2B01G103400 chr2A 85.787 197 21 3 4309 4498 41623567 41623763 7.640000e-48 202.0
16 TraesCS2B01G103400 chr7D 82.500 640 108 4 213 850 133886918 133887555 3.930000e-155 558.0
17 TraesCS2B01G103400 chr6D 80.645 651 121 5 204 852 389599313 389598666 2.420000e-137 499.0
18 TraesCS2B01G103400 chr6B 82.051 585 101 4 268 851 508533419 508532838 3.130000e-136 496.0
19 TraesCS2B01G103400 chr6B 90.875 263 18 6 4052 4312 4952985 4953243 9.270000e-92 348.0
20 TraesCS2B01G103400 chr6B 90.875 263 18 6 4052 4312 4975367 4975625 9.270000e-92 348.0
21 TraesCS2B01G103400 chr5D 81.403 613 104 8 244 851 486225563 486226170 4.050000e-135 492.0
22 TraesCS2B01G103400 chr5D 81.376 596 104 7 269 860 536240104 536239512 3.150000e-131 479.0
23 TraesCS2B01G103400 chr5D 90.196 51 4 1 75 124 519429325 519429375 1.050000e-06 65.8
24 TraesCS2B01G103400 chr5B 80.882 612 111 5 241 851 680927267 680927873 1.130000e-130 477.0
25 TraesCS2B01G103400 chr1D 81.154 589 97 13 269 852 192363109 192362530 1.140000e-125 460.0
26 TraesCS2B01G103400 chr1D 90.074 272 23 3 4048 4316 76971217 76970947 2.580000e-92 350.0
27 TraesCS2B01G103400 chr1D 90.566 265 22 3 4052 4314 365804820 365804557 9.270000e-92 348.0
28 TraesCS2B01G103400 chr7B 80.064 627 111 12 217 839 527680856 527681472 1.910000e-123 453.0
29 TraesCS2B01G103400 chr7B 96.970 33 0 1 93 124 303225966 303225998 2.000000e-03 54.7
30 TraesCS2B01G103400 chr7B 100.000 29 0 0 97 125 468408890 468408862 2.000000e-03 54.7
31 TraesCS2B01G103400 chr7B 96.774 31 1 0 67 97 644529474 644529504 8.000000e-03 52.8
32 TraesCS2B01G103400 chr3D 90.672 268 20 5 4047 4312 306029223 306028959 7.170000e-93 351.0
33 TraesCS2B01G103400 chr3D 90.875 263 21 2 4051 4311 91541209 91541470 2.580000e-92 350.0
34 TraesCS2B01G103400 chr3D 84.746 59 5 3 66 124 172346094 172346040 6.290000e-04 56.5
35 TraesCS2B01G103400 chr1B 90.637 267 20 4 4052 4314 12835103 12835368 2.580000e-92 350.0
36 TraesCS2B01G103400 chr1B 90.000 270 24 3 4049 4316 538625640 538625372 3.330000e-91 346.0
37 TraesCS2B01G103400 chr4B 93.023 43 1 2 93 134 102362790 102362831 1.350000e-05 62.1
38 TraesCS2B01G103400 chr4B 100.000 29 0 0 97 125 438377442 438377414 2.000000e-03 54.7
39 TraesCS2B01G103400 chr5A 100.000 30 0 0 97 126 494573010 494572981 6.290000e-04 56.5
40 TraesCS2B01G103400 chr3A 96.970 33 0 1 93 124 398262123 398262155 2.000000e-03 54.7
41 TraesCS2B01G103400 chrUn 100.000 28 0 0 97 124 10363132 10363159 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G103400 chr2B 64189780 64194282 4502 False 8316.0 8316 100.00000 1 4503 1 chr2B.!!$F2 4502
1 TraesCS2B01G103400 chr2B 63860330 63865185 4855 True 1568.0 2892 87.73400 1138 4503 2 chr2B.!!$R1 3365
2 TraesCS2B01G103400 chr2B 64087116 64091833 4717 True 861.5 2477 88.71975 899 4480 4 chr2B.!!$R2 3581
3 TraesCS2B01G103400 chr2D 36884992 36890444 5452 False 2230.5 4233 86.52000 120 4054 2 chr2D.!!$F1 3934
4 TraesCS2B01G103400 chr2D 36910956 36915411 4455 False 1607.0 2981 86.38950 1123 4054 2 chr2D.!!$F2 2931
5 TraesCS2B01G103400 chr2A 41620342 41623763 3421 False 1403.0 2604 86.39300 1138 4498 2 chr2A.!!$F1 3360
6 TraesCS2B01G103400 chr7D 133886918 133887555 637 False 558.0 558 82.50000 213 850 1 chr7D.!!$F1 637
7 TraesCS2B01G103400 chr6D 389598666 389599313 647 True 499.0 499 80.64500 204 852 1 chr6D.!!$R1 648
8 TraesCS2B01G103400 chr6B 508532838 508533419 581 True 496.0 496 82.05100 268 851 1 chr6B.!!$R1 583
9 TraesCS2B01G103400 chr5D 486225563 486226170 607 False 492.0 492 81.40300 244 851 1 chr5D.!!$F1 607
10 TraesCS2B01G103400 chr5D 536239512 536240104 592 True 479.0 479 81.37600 269 860 1 chr5D.!!$R1 591
11 TraesCS2B01G103400 chr5B 680927267 680927873 606 False 477.0 477 80.88200 241 851 1 chr5B.!!$F1 610
12 TraesCS2B01G103400 chr1D 192362530 192363109 579 True 460.0 460 81.15400 269 852 1 chr1D.!!$R2 583
13 TraesCS2B01G103400 chr7B 527680856 527681472 616 False 453.0 453 80.06400 217 839 1 chr7B.!!$F2 622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.035458 CTCCCTCCGTCCCATAATGC 59.965 60.0 0.0 0.0 0.00 3.56 F
444 448 0.042731 AAGGTACTCCCTGCCTAGCA 59.957 55.0 0.0 0.0 45.47 3.49 F
2181 2219 0.036388 CGGTTAGTGGATGGTGTGCT 60.036 55.0 0.0 0.0 0.00 4.40 F
2632 2692 0.179134 GATGAGGTCGGTGGAAGTCG 60.179 60.0 0.0 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1932 1970 0.325203 AGGAGAGGCAGAGGTCCTTC 60.325 60.0 0.00 0.00 35.84 3.46 R
2208 2246 0.733150 CGATAGCTCCGGCGATGATA 59.267 55.0 9.30 3.76 44.37 2.15 R
2988 3054 0.037605 CCGCCTTCACGTCCTTTACT 60.038 55.0 0.00 0.00 0.00 2.24 R
3877 6184 0.598680 TTTGAAATTTGGCGCCCACG 60.599 50.0 26.77 0.00 44.07 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.680312 ACATAGCAGCTGTGGTACTG 57.320 50.000 21.96 7.35 39.44 2.74
20 21 2.179427 ACATAGCAGCTGTGGTACTGA 58.821 47.619 21.96 0.00 39.44 3.41
21 22 2.567169 ACATAGCAGCTGTGGTACTGAA 59.433 45.455 21.96 0.00 39.44 3.02
22 23 3.007940 ACATAGCAGCTGTGGTACTGAAA 59.992 43.478 21.96 0.00 39.44 2.69
23 24 2.867109 AGCAGCTGTGGTACTGAAAT 57.133 45.000 16.64 0.00 35.90 2.17
24 25 3.981071 AGCAGCTGTGGTACTGAAATA 57.019 42.857 16.64 0.00 35.90 1.40
25 26 3.600388 AGCAGCTGTGGTACTGAAATAC 58.400 45.455 16.64 0.00 35.90 1.89
26 27 2.348666 GCAGCTGTGGTACTGAAATACG 59.651 50.000 16.64 0.00 35.90 3.06
27 28 3.845178 CAGCTGTGGTACTGAAATACGA 58.155 45.455 5.25 0.00 35.90 3.43
28 29 4.433615 CAGCTGTGGTACTGAAATACGAT 58.566 43.478 5.25 0.00 35.90 3.73
29 30 4.504461 CAGCTGTGGTACTGAAATACGATC 59.496 45.833 5.25 0.00 35.90 3.69
30 31 4.159693 AGCTGTGGTACTGAAATACGATCA 59.840 41.667 0.00 0.00 0.00 2.92
31 32 4.868171 GCTGTGGTACTGAAATACGATCAA 59.132 41.667 0.00 0.00 0.00 2.57
32 33 5.005779 GCTGTGGTACTGAAATACGATCAAG 59.994 44.000 0.00 0.00 0.00 3.02
33 34 6.032956 TGTGGTACTGAAATACGATCAAGT 57.967 37.500 0.00 0.00 0.00 3.16
34 35 7.160547 TGTGGTACTGAAATACGATCAAGTA 57.839 36.000 0.00 0.00 0.00 2.24
35 36 7.778083 TGTGGTACTGAAATACGATCAAGTAT 58.222 34.615 0.00 0.00 38.83 2.12
36 37 7.919091 TGTGGTACTGAAATACGATCAAGTATC 59.081 37.037 0.00 0.00 36.39 2.24
37 38 7.919091 GTGGTACTGAAATACGATCAAGTATCA 59.081 37.037 0.00 0.00 36.39 2.15
38 39 8.638873 TGGTACTGAAATACGATCAAGTATCAT 58.361 33.333 0.00 0.00 36.39 2.45
48 49 6.871844 ACGATCAAGTATCATATCATCAGGG 58.128 40.000 0.00 0.00 33.87 4.45
49 50 6.438741 ACGATCAAGTATCATATCATCAGGGT 59.561 38.462 0.00 0.00 33.87 4.34
50 51 6.977502 CGATCAAGTATCATATCATCAGGGTC 59.022 42.308 0.00 0.00 33.87 4.46
51 52 7.363268 CGATCAAGTATCATATCATCAGGGTCA 60.363 40.741 0.00 0.00 33.87 4.02
52 53 7.616528 TCAAGTATCATATCATCAGGGTCAA 57.383 36.000 0.00 0.00 0.00 3.18
53 54 7.674120 TCAAGTATCATATCATCAGGGTCAAG 58.326 38.462 0.00 0.00 0.00 3.02
54 55 7.290948 TCAAGTATCATATCATCAGGGTCAAGT 59.709 37.037 0.00 0.00 0.00 3.16
55 56 7.238486 AGTATCATATCATCAGGGTCAAGTC 57.762 40.000 0.00 0.00 0.00 3.01
56 57 6.784473 AGTATCATATCATCAGGGTCAAGTCA 59.216 38.462 0.00 0.00 0.00 3.41
57 58 5.955961 TCATATCATCAGGGTCAAGTCAA 57.044 39.130 0.00 0.00 0.00 3.18
58 59 5.674525 TCATATCATCAGGGTCAAGTCAAC 58.325 41.667 0.00 0.00 0.00 3.18
59 60 5.426509 TCATATCATCAGGGTCAAGTCAACT 59.573 40.000 0.00 0.00 0.00 3.16
60 61 4.647564 ATCATCAGGGTCAAGTCAACTT 57.352 40.909 0.00 0.00 36.45 2.66
61 62 5.762179 ATCATCAGGGTCAAGTCAACTTA 57.238 39.130 0.00 0.00 34.28 2.24
62 63 5.762179 TCATCAGGGTCAAGTCAACTTAT 57.238 39.130 0.00 0.00 34.28 1.73
63 64 6.867519 TCATCAGGGTCAAGTCAACTTATA 57.132 37.500 0.00 0.00 34.28 0.98
64 65 7.437713 TCATCAGGGTCAAGTCAACTTATAT 57.562 36.000 0.00 0.00 34.28 0.86
65 66 7.500992 TCATCAGGGTCAAGTCAACTTATATC 58.499 38.462 0.00 0.00 34.28 1.63
66 67 6.235231 TCAGGGTCAAGTCAACTTATATCC 57.765 41.667 0.00 0.00 34.28 2.59
67 68 5.724370 TCAGGGTCAAGTCAACTTATATCCA 59.276 40.000 8.59 0.00 34.28 3.41
68 69 5.817816 CAGGGTCAAGTCAACTTATATCCAC 59.182 44.000 8.59 0.00 34.28 4.02
69 70 5.487488 AGGGTCAAGTCAACTTATATCCACA 59.513 40.000 8.59 0.00 34.28 4.17
70 71 6.012858 AGGGTCAAGTCAACTTATATCCACAA 60.013 38.462 8.59 0.00 34.28 3.33
71 72 6.657541 GGGTCAAGTCAACTTATATCCACAAA 59.342 38.462 0.00 0.00 34.28 2.83
72 73 7.339466 GGGTCAAGTCAACTTATATCCACAAAT 59.661 37.037 0.00 0.00 34.28 2.32
73 74 8.398665 GGTCAAGTCAACTTATATCCACAAATC 58.601 37.037 0.00 0.00 34.28 2.17
74 75 8.946085 GTCAAGTCAACTTATATCCACAAATCA 58.054 33.333 0.00 0.00 34.28 2.57
75 76 9.685276 TCAAGTCAACTTATATCCACAAATCAT 57.315 29.630 0.00 0.00 34.28 2.45
80 81 9.778741 TCAACTTATATCCACAAATCATACTCC 57.221 33.333 0.00 0.00 0.00 3.85
81 82 9.003658 CAACTTATATCCACAAATCATACTCCC 57.996 37.037 0.00 0.00 0.00 4.30
82 83 8.511748 ACTTATATCCACAAATCATACTCCCT 57.488 34.615 0.00 0.00 0.00 4.20
83 84 8.598041 ACTTATATCCACAAATCATACTCCCTC 58.402 37.037 0.00 0.00 0.00 4.30
84 85 4.713792 ATCCACAAATCATACTCCCTCC 57.286 45.455 0.00 0.00 0.00 4.30
85 86 2.434336 TCCACAAATCATACTCCCTCCG 59.566 50.000 0.00 0.00 0.00 4.63
86 87 2.170607 CCACAAATCATACTCCCTCCGT 59.829 50.000 0.00 0.00 0.00 4.69
87 88 3.458189 CACAAATCATACTCCCTCCGTC 58.542 50.000 0.00 0.00 0.00 4.79
88 89 2.434702 ACAAATCATACTCCCTCCGTCC 59.565 50.000 0.00 0.00 0.00 4.79
89 90 1.718280 AATCATACTCCCTCCGTCCC 58.282 55.000 0.00 0.00 0.00 4.46
90 91 0.561184 ATCATACTCCCTCCGTCCCA 59.439 55.000 0.00 0.00 0.00 4.37
91 92 0.561184 TCATACTCCCTCCGTCCCAT 59.439 55.000 0.00 0.00 0.00 4.00
92 93 1.784593 TCATACTCCCTCCGTCCCATA 59.215 52.381 0.00 0.00 0.00 2.74
93 94 2.178325 TCATACTCCCTCCGTCCCATAA 59.822 50.000 0.00 0.00 0.00 1.90
94 95 3.173965 CATACTCCCTCCGTCCCATAAT 58.826 50.000 0.00 0.00 0.00 1.28
95 96 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
96 97 0.035458 CTCCCTCCGTCCCATAATGC 59.965 60.000 0.00 0.00 0.00 3.56
97 98 0.399949 TCCCTCCGTCCCATAATGCT 60.400 55.000 0.00 0.00 0.00 3.79
98 99 0.474184 CCCTCCGTCCCATAATGCTT 59.526 55.000 0.00 0.00 0.00 3.91
99 100 1.697432 CCCTCCGTCCCATAATGCTTA 59.303 52.381 0.00 0.00 0.00 3.09
100 101 2.550208 CCCTCCGTCCCATAATGCTTAC 60.550 54.545 0.00 0.00 0.00 2.34
101 102 2.104111 CCTCCGTCCCATAATGCTTACA 59.896 50.000 0.00 0.00 0.00 2.41
102 103 3.244561 CCTCCGTCCCATAATGCTTACAT 60.245 47.826 0.00 0.00 38.49 2.29
115 116 4.371624 TGCTTACATTATGGGATGGAGG 57.628 45.455 0.00 0.00 0.00 4.30
116 117 3.074390 TGCTTACATTATGGGATGGAGGG 59.926 47.826 0.00 0.00 0.00 4.30
117 118 3.330701 GCTTACATTATGGGATGGAGGGA 59.669 47.826 0.00 0.00 0.00 4.20
118 119 4.566488 GCTTACATTATGGGATGGAGGGAG 60.566 50.000 0.00 0.00 0.00 4.30
126 127 3.381335 TGGGATGGAGGGAGTAGTAAAC 58.619 50.000 0.00 0.00 0.00 2.01
130 131 4.281435 GGATGGAGGGAGTAGTAAACTAGC 59.719 50.000 0.00 0.00 39.07 3.42
151 152 8.428852 ACTAGCAAATGTTTACCCAGAATTTTT 58.571 29.630 0.00 0.00 0.00 1.94
158 159 7.292713 TGTTTACCCAGAATTTTTAACTCCC 57.707 36.000 0.00 0.00 0.00 4.30
160 161 7.565768 TGTTTACCCAGAATTTTTAACTCCCTT 59.434 33.333 0.00 0.00 0.00 3.95
199 200 9.573166 AAAAATCATACATATGGTTAGCAGCTA 57.427 29.630 7.80 0.00 36.07 3.32
200 201 9.745018 AAAATCATACATATGGTTAGCAGCTAT 57.255 29.630 7.80 0.00 36.07 2.97
226 227 1.697291 CCTGGCTCCTCTCCCCTAAAT 60.697 57.143 0.00 0.00 0.00 1.40
234 235 5.646215 CTCCTCTCCCCTAAATAGCTTAGA 58.354 45.833 0.00 0.00 39.66 2.10
236 237 4.221924 CCTCTCCCCTAAATAGCTTAGAGC 59.778 50.000 0.00 0.00 39.66 4.09
298 299 0.541863 CTCGTGGCCTTAGGACCATT 59.458 55.000 15.37 0.00 38.46 3.16
327 328 4.115199 GATCCCGGGCCTTGCTGT 62.115 66.667 18.49 0.00 0.00 4.40
345 346 1.228124 TCGGGTGGGCTCTGTTTTG 60.228 57.895 0.00 0.00 0.00 2.44
365 369 9.487790 TGTTTTGAGATGTTTCTTTGAGTTTTT 57.512 25.926 0.00 0.00 30.30 1.94
414 418 1.075970 AGATGGCAGCGACTCCCTA 60.076 57.895 0.00 0.00 0.00 3.53
444 448 0.042731 AAGGTACTCCCTGCCTAGCA 59.957 55.000 0.00 0.00 45.47 3.49
448 452 1.886730 TACTCCCTGCCTAGCACCCT 61.887 60.000 0.00 0.00 33.79 4.34
540 544 0.900421 CTGCTCAGATCTGGTGGTCA 59.100 55.000 22.42 11.67 0.00 4.02
565 569 4.082949 TCGTCTACATTCGTGTGTCTTCAT 60.083 41.667 0.00 0.00 33.62 2.57
588 592 2.515996 GAATCCTTCCGACCCACGCA 62.516 60.000 0.00 0.00 41.07 5.24
596 603 2.811317 GACCCACGCAGCTCTTCG 60.811 66.667 0.00 0.00 0.00 3.79
645 652 3.326521 TGGTCATATGGGGACTTAGCAT 58.673 45.455 2.13 0.00 35.61 3.79
651 658 1.271856 TGGGGACTTAGCATGACGAA 58.728 50.000 0.00 0.00 0.00 3.85
655 662 3.432326 GGGGACTTAGCATGACGAATTCT 60.432 47.826 3.52 0.00 0.00 2.40
666 673 5.521735 GCATGACGAATTCTTGACTGTCTAT 59.478 40.000 9.51 0.00 32.19 1.98
711 718 2.363795 AAGGAGGGGCGATGACGA 60.364 61.111 0.00 0.00 42.66 4.20
742 749 2.047844 GCTCGCTCCAGTGCTTGA 60.048 61.111 0.00 0.00 0.00 3.02
775 782 3.052566 AGGTGGTCTACAGATCTGGATGA 60.053 47.826 26.08 16.90 34.19 2.92
780 787 6.481644 GTGGTCTACAGATCTGGATGAAATTC 59.518 42.308 26.08 8.96 34.19 2.17
885 893 4.473643 GCTTGGTGCCGGCATATA 57.526 55.556 35.23 19.18 35.15 0.86
887 895 0.523072 GCTTGGTGCCGGCATATATG 59.477 55.000 35.23 22.40 35.15 1.78
898 906 2.486472 GCATATATGGCTGGCAGACT 57.514 50.000 23.12 9.71 0.00 3.24
899 907 2.082231 GCATATATGGCTGGCAGACTG 58.918 52.381 23.12 12.14 0.00 3.51
900 908 2.708051 CATATATGGCTGGCAGACTGG 58.292 52.381 23.12 0.51 0.00 4.00
901 909 0.397941 TATATGGCTGGCAGACTGGC 59.602 55.000 23.12 21.54 44.03 4.85
928 936 1.246056 TGGCACCAGCTCATTTCAGC 61.246 55.000 0.00 0.00 41.70 4.26
969 977 0.681564 CCGGCCGCTCTCCTCTATAT 60.682 60.000 22.85 0.00 0.00 0.86
971 979 2.366533 CGGCCGCTCTCCTCTATATAA 58.633 52.381 14.67 0.00 0.00 0.98
972 980 2.356382 CGGCCGCTCTCCTCTATATAAG 59.644 54.545 14.67 0.00 0.00 1.73
993 1001 1.812922 GGCACGCTCCATCACTCTG 60.813 63.158 0.00 0.00 0.00 3.35
996 1004 0.671472 CACGCTCCATCACTCTGCAA 60.671 55.000 0.00 0.00 0.00 4.08
1040 1060 2.742053 CCACCGTTGATAACCTCTTGTG 59.258 50.000 0.00 0.00 0.00 3.33
1050 1070 7.101652 TGATAACCTCTTGTGCTAGTAAGAG 57.898 40.000 18.62 18.62 45.94 2.85
1105 1125 2.149578 CTGCTGTGAAGAAGGTCCAAG 58.850 52.381 0.00 0.00 0.00 3.61
1809 1832 3.015516 GGAGCACGTCCAGGAAAAA 57.984 52.632 0.00 0.00 46.10 1.94
1851 1889 1.872237 CGTGAAGCCCTCGAAGACAAA 60.872 52.381 0.00 0.00 33.99 2.83
1854 1892 1.801178 GAAGCCCTCGAAGACAAACTG 59.199 52.381 0.00 0.00 0.00 3.16
1878 1916 3.470567 CTCGTGACGCTTGACCGC 61.471 66.667 0.00 0.00 0.00 5.68
1934 1972 2.668212 CAAGCGGCGGGAGTTGAA 60.668 61.111 9.78 0.00 0.00 2.69
1974 2012 1.153469 CCTCTTCAAGAGCCTCCGC 60.153 63.158 9.14 0.00 40.98 5.54
1999 2037 1.811645 GCTCTCCGGATACCCTCTGC 61.812 65.000 3.57 0.00 0.00 4.26
2037 2075 2.048127 GCCCTCGACTTCGTGCTT 60.048 61.111 0.00 0.00 40.80 3.91
2049 2087 1.149174 CGTGCTTAGGGGCATGGAT 59.851 57.895 0.00 0.00 44.34 3.41
2076 2114 2.282180 GGCAACGGCAAAGGAGGA 60.282 61.111 0.00 0.00 43.71 3.71
2091 2129 1.379044 AGGAACCGATACCGACCGT 60.379 57.895 0.00 0.00 38.22 4.83
2164 2202 2.125912 CGCTCCCTCTGTGTTCGG 60.126 66.667 0.00 0.00 0.00 4.30
2166 2204 1.371558 GCTCCCTCTGTGTTCGGTT 59.628 57.895 0.00 0.00 0.00 4.44
2172 2210 1.616865 CCTCTGTGTTCGGTTAGTGGA 59.383 52.381 0.00 0.00 0.00 4.02
2178 2216 1.695242 TGTTCGGTTAGTGGATGGTGT 59.305 47.619 0.00 0.00 0.00 4.16
2181 2219 0.036388 CGGTTAGTGGATGGTGTGCT 60.036 55.000 0.00 0.00 0.00 4.40
2182 2220 1.206132 CGGTTAGTGGATGGTGTGCTA 59.794 52.381 0.00 0.00 0.00 3.49
2184 2222 3.206150 GGTTAGTGGATGGTGTGCTATG 58.794 50.000 0.00 0.00 0.00 2.23
2208 2246 2.302157 CAACTACCTCCTTTCCGTCCTT 59.698 50.000 0.00 0.00 0.00 3.36
2252 2291 4.094887 CGTGGGAGTGGTTTATCAAATCAG 59.905 45.833 0.00 0.00 30.89 2.90
2305 2350 3.341629 CTGCCCCACCTGTCCCAT 61.342 66.667 0.00 0.00 0.00 4.00
2465 2516 4.451150 CAGCAAGACGGGGCGCTA 62.451 66.667 7.64 0.00 32.29 4.26
2490 2541 4.735132 GCAGCGCTGGACGTGGTA 62.735 66.667 36.47 0.00 46.11 3.25
2511 2562 4.697756 CGTCTCAGGCCGGCCAAA 62.698 66.667 45.13 30.98 38.92 3.28
2536 2587 1.372087 GAGCAACAAGATCGGGCAGG 61.372 60.000 0.00 0.00 0.00 4.85
2538 2589 0.749454 GCAACAAGATCGGGCAGGAT 60.749 55.000 0.00 0.00 0.00 3.24
2574 2625 2.556287 CGTTTCAGCAGGCGTTCC 59.444 61.111 0.00 0.00 0.00 3.62
2586 2637 2.687805 GCGTTCCGGGCTTTTCTCC 61.688 63.158 0.00 0.00 0.00 3.71
2632 2692 0.179134 GATGAGGTCGGTGGAAGTCG 60.179 60.000 0.00 0.00 0.00 4.18
2751 2811 1.529010 CAAGGTCAACAGCTGGGCA 60.529 57.895 19.93 0.00 0.00 5.36
2755 2815 1.604593 GTCAACAGCTGGGCATGGT 60.605 57.895 19.93 0.00 0.00 3.55
2988 3054 2.352030 CGACAAGCGGTACAAGGAAGTA 60.352 50.000 0.00 0.00 36.03 2.24
2991 3057 3.828451 ACAAGCGGTACAAGGAAGTAGTA 59.172 43.478 0.00 0.00 0.00 1.82
3222 3288 4.753877 CTCTTCGTCGCGCCGTCA 62.754 66.667 10.12 0.00 0.00 4.35
3584 3890 4.026052 CCCATGTCTGAAAAAGGCCTAAT 58.974 43.478 5.16 0.00 0.00 1.73
3760 4072 1.673337 GGCCAAACTACCCACCGAC 60.673 63.158 0.00 0.00 0.00 4.79
3818 4135 8.508601 TGAGATGGAGGGAGTAGTATTTAGTAA 58.491 37.037 0.00 0.00 0.00 2.24
3819 4136 9.536510 GAGATGGAGGGAGTAGTATTTAGTAAT 57.463 37.037 0.00 0.00 0.00 1.89
3823 4140 8.701895 TGGAGGGAGTAGTATTTAGTAATTGTG 58.298 37.037 0.00 0.00 0.00 3.33
3836 5764 3.642778 ATTGTGCGGACCCGACTCG 62.643 63.158 13.24 0.00 42.83 4.18
3877 6184 2.551459 GGCCTCTGTATCATTGTGATGC 59.449 50.000 0.00 2.25 37.70 3.91
3894 6206 2.647875 CGTGGGCGCCAAATTTCA 59.352 55.556 30.85 13.29 34.18 2.69
3897 6209 1.807139 GTGGGCGCCAAATTTCAAAT 58.193 45.000 30.85 0.00 34.18 2.32
3901 6213 5.112686 GTGGGCGCCAAATTTCAAATTATA 58.887 37.500 30.85 0.00 34.18 0.98
3902 6214 5.582665 GTGGGCGCCAAATTTCAAATTATAA 59.417 36.000 30.85 0.00 34.18 0.98
3903 6215 6.092807 GTGGGCGCCAAATTTCAAATTATAAA 59.907 34.615 30.85 0.00 34.18 1.40
3904 6216 6.825721 TGGGCGCCAAATTTCAAATTATAAAT 59.174 30.769 30.85 0.00 0.00 1.40
3905 6217 7.987458 TGGGCGCCAAATTTCAAATTATAAATA 59.013 29.630 30.85 0.00 0.00 1.40
3906 6218 8.998377 GGGCGCCAAATTTCAAATTATAAATAT 58.002 29.630 30.85 0.00 0.00 1.28
3951 6263 9.539825 ACAGCTAATTACATATTTGACAGAGAG 57.460 33.333 0.00 0.00 0.00 3.20
4030 6342 7.467557 TTGATTTGAAATGCTTTGACAAGAC 57.532 32.000 0.00 0.00 30.57 3.01
4053 6366 9.751542 AGACATACTACTCTTTGCAATATGTAC 57.248 33.333 15.85 11.21 33.18 2.90
4054 6367 9.751542 GACATACTACTCTTTGCAATATGTACT 57.248 33.333 15.85 5.60 33.18 2.73
4055 6368 9.751542 ACATACTACTCTTTGCAATATGTACTC 57.248 33.333 14.78 0.00 31.69 2.59
4056 6369 9.197694 CATACTACTCTTTGCAATATGTACTCC 57.802 37.037 0.00 0.00 0.00 3.85
4057 6370 6.583562 ACTACTCTTTGCAATATGTACTCCC 58.416 40.000 0.00 0.00 0.00 4.30
4058 6371 5.700402 ACTCTTTGCAATATGTACTCCCT 57.300 39.130 0.00 0.00 0.00 4.20
4059 6372 5.675538 ACTCTTTGCAATATGTACTCCCTC 58.324 41.667 0.00 0.00 0.00 4.30
4060 6373 5.426833 ACTCTTTGCAATATGTACTCCCTCT 59.573 40.000 0.00 0.00 0.00 3.69
4061 6374 5.674525 TCTTTGCAATATGTACTCCCTCTG 58.325 41.667 0.00 0.00 0.00 3.35
4062 6375 5.189736 TCTTTGCAATATGTACTCCCTCTGT 59.810 40.000 0.00 0.00 0.00 3.41
4063 6376 5.435686 TTGCAATATGTACTCCCTCTGTT 57.564 39.130 0.00 0.00 0.00 3.16
4064 6377 5.435686 TGCAATATGTACTCCCTCTGTTT 57.564 39.130 0.00 0.00 0.00 2.83
4065 6378 5.815581 TGCAATATGTACTCCCTCTGTTTT 58.184 37.500 0.00 0.00 0.00 2.43
4066 6379 6.245408 TGCAATATGTACTCCCTCTGTTTTT 58.755 36.000 0.00 0.00 0.00 1.94
4089 6402 8.500753 TTTTTAGTCTGCATATACGATTTGGT 57.499 30.769 0.00 0.00 0.00 3.67
4090 6403 7.709269 TTTAGTCTGCATATACGATTTGGTC 57.291 36.000 0.00 0.00 0.00 4.02
4091 6404 5.276461 AGTCTGCATATACGATTTGGTCA 57.724 39.130 0.00 0.00 0.00 4.02
4092 6405 5.670485 AGTCTGCATATACGATTTGGTCAA 58.330 37.500 0.00 0.00 0.00 3.18
4093 6406 6.112734 AGTCTGCATATACGATTTGGTCAAA 58.887 36.000 0.00 0.00 34.46 2.69
4094 6407 6.258727 AGTCTGCATATACGATTTGGTCAAAG 59.741 38.462 2.55 0.00 33.32 2.77
4095 6408 6.037172 GTCTGCATATACGATTTGGTCAAAGT 59.963 38.462 2.55 0.00 33.32 2.66
4096 6409 6.257849 TCTGCATATACGATTTGGTCAAAGTC 59.742 38.462 2.55 0.78 33.32 3.01
4097 6410 5.877564 TGCATATACGATTTGGTCAAAGTCA 59.122 36.000 2.55 0.00 33.32 3.41
4098 6411 6.372937 TGCATATACGATTTGGTCAAAGTCAA 59.627 34.615 2.55 0.00 33.32 3.18
4099 6412 7.094592 TGCATATACGATTTGGTCAAAGTCAAA 60.095 33.333 2.55 0.00 37.29 2.69
4100 6413 7.218204 GCATATACGATTTGGTCAAAGTCAAAC 59.782 37.037 2.55 0.00 35.97 2.93
4101 6414 6.877611 ATACGATTTGGTCAAAGTCAAACT 57.122 33.333 2.55 0.00 35.97 2.66
4102 6415 5.576447 ACGATTTGGTCAAAGTCAAACTT 57.424 34.783 2.55 0.00 40.80 2.66
4157 6470 7.985476 AGTATCAACAACTACAATACCAATGC 58.015 34.615 0.00 0.00 0.00 3.56
4158 6471 7.829211 AGTATCAACAACTACAATACCAATGCT 59.171 33.333 0.00 0.00 0.00 3.79
4159 6472 9.104965 GTATCAACAACTACAATACCAATGCTA 57.895 33.333 0.00 0.00 0.00 3.49
4160 6473 8.752005 ATCAACAACTACAATACCAATGCTAT 57.248 30.769 0.00 0.00 0.00 2.97
4161 6474 9.845740 ATCAACAACTACAATACCAATGCTATA 57.154 29.630 0.00 0.00 0.00 1.31
4162 6475 9.845740 TCAACAACTACAATACCAATGCTATAT 57.154 29.630 0.00 0.00 0.00 0.86
4163 6476 9.882996 CAACAACTACAATACCAATGCTATATG 57.117 33.333 0.00 0.00 0.00 1.78
4164 6477 8.621532 ACAACTACAATACCAATGCTATATGG 57.378 34.615 0.00 0.00 42.60 2.74
4203 6516 9.955208 TTTCATGATGCATCTAACAATATTGAC 57.045 29.630 26.32 0.00 0.00 3.18
4204 6517 8.913487 TCATGATGCATCTAACAATATTGACT 57.087 30.769 26.32 10.65 0.00 3.41
4205 6518 9.346005 TCATGATGCATCTAACAATATTGACTT 57.654 29.630 26.32 9.25 0.00 3.01
4206 6519 9.608617 CATGATGCATCTAACAATATTGACTTC 57.391 33.333 26.32 9.33 0.00 3.01
4207 6520 8.735692 TGATGCATCTAACAATATTGACTTCA 57.264 30.769 26.32 9.83 0.00 3.02
4208 6521 9.346005 TGATGCATCTAACAATATTGACTTCAT 57.654 29.630 26.32 13.45 0.00 2.57
4212 6525 9.964253 GCATCTAACAATATTGACTTCATATCG 57.036 33.333 22.16 2.16 0.00 2.92
4219 6532 9.770097 ACAATATTGACTTCATATCGTGAATCT 57.230 29.630 22.16 0.00 45.36 2.40
4222 6535 9.987272 ATATTGACTTCATATCGTGAATCTTGA 57.013 29.630 0.00 0.00 45.36 3.02
4223 6536 8.899427 ATTGACTTCATATCGTGAATCTTGAT 57.101 30.769 0.00 0.00 45.36 2.57
4224 6537 9.987272 ATTGACTTCATATCGTGAATCTTGATA 57.013 29.630 0.00 0.00 45.36 2.15
4225 6538 9.987272 TTGACTTCATATCGTGAATCTTGATAT 57.013 29.630 3.21 3.21 45.36 1.63
4301 6614 8.420374 TCTTATATGCAAACTAGAAGGAAACG 57.580 34.615 0.00 0.00 0.00 3.60
4302 6615 7.494625 TCTTATATGCAAACTAGAAGGAAACGG 59.505 37.037 0.00 0.00 0.00 4.44
4303 6616 3.478857 TGCAAACTAGAAGGAAACGGA 57.521 42.857 0.00 0.00 0.00 4.69
4304 6617 3.399330 TGCAAACTAGAAGGAAACGGAG 58.601 45.455 0.00 0.00 0.00 4.63
4305 6618 2.742589 GCAAACTAGAAGGAAACGGAGG 59.257 50.000 0.00 0.00 0.00 4.30
4306 6619 3.335579 CAAACTAGAAGGAAACGGAGGG 58.664 50.000 0.00 0.00 0.00 4.30
4307 6620 2.617840 ACTAGAAGGAAACGGAGGGA 57.382 50.000 0.00 0.00 0.00 4.20
4308 6621 2.458620 ACTAGAAGGAAACGGAGGGAG 58.541 52.381 0.00 0.00 0.00 4.30
4309 6622 2.225318 ACTAGAAGGAAACGGAGGGAGT 60.225 50.000 0.00 0.00 0.00 3.85
4310 6623 2.617840 AGAAGGAAACGGAGGGAGTA 57.382 50.000 0.00 0.00 0.00 2.59
4360 6673 3.985445 GCTTCCTAGCATAAGCGTCACTT 60.985 47.826 6.87 0.00 46.95 3.16
4486 6813 0.250467 AGGAGTGCTTTCATGCGTGT 60.250 50.000 5.68 0.00 35.36 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.179427 TCAGTACCACAGCTGCTATGT 58.821 47.619 15.27 8.39 33.09 2.29
3 4 3.981071 ATTTCAGTACCACAGCTGCTA 57.019 42.857 15.27 0.00 33.09 3.49
4 5 2.867109 ATTTCAGTACCACAGCTGCT 57.133 45.000 15.27 0.00 33.09 4.24
5 6 2.348666 CGTATTTCAGTACCACAGCTGC 59.651 50.000 15.27 0.00 33.09 5.25
6 7 3.845178 TCGTATTTCAGTACCACAGCTG 58.155 45.455 13.48 13.48 0.00 4.24
7 8 4.159693 TGATCGTATTTCAGTACCACAGCT 59.840 41.667 0.00 0.00 0.00 4.24
8 9 4.430007 TGATCGTATTTCAGTACCACAGC 58.570 43.478 0.00 0.00 0.00 4.40
11 12 7.919091 TGATACTTGATCGTATTTCAGTACCAC 59.081 37.037 0.00 0.00 37.38 4.16
12 13 8.002984 TGATACTTGATCGTATTTCAGTACCA 57.997 34.615 0.00 0.00 37.38 3.25
22 23 8.637099 CCCTGATGATATGATACTTGATCGTAT 58.363 37.037 0.00 0.00 45.65 3.06
23 24 7.615757 ACCCTGATGATATGATACTTGATCGTA 59.384 37.037 0.00 0.00 39.79 3.43
24 25 6.438741 ACCCTGATGATATGATACTTGATCGT 59.561 38.462 0.00 0.00 37.38 3.73
25 26 6.871844 ACCCTGATGATATGATACTTGATCG 58.128 40.000 0.00 0.00 37.38 3.69
26 27 7.845037 TGACCCTGATGATATGATACTTGATC 58.155 38.462 0.00 0.00 34.84 2.92
27 28 7.803487 TGACCCTGATGATATGATACTTGAT 57.197 36.000 0.00 0.00 0.00 2.57
28 29 7.290948 ACTTGACCCTGATGATATGATACTTGA 59.709 37.037 0.00 0.00 0.00 3.02
29 30 7.448420 ACTTGACCCTGATGATATGATACTTG 58.552 38.462 0.00 0.00 0.00 3.16
30 31 7.290948 TGACTTGACCCTGATGATATGATACTT 59.709 37.037 0.00 0.00 0.00 2.24
31 32 6.784473 TGACTTGACCCTGATGATATGATACT 59.216 38.462 0.00 0.00 0.00 2.12
32 33 6.997655 TGACTTGACCCTGATGATATGATAC 58.002 40.000 0.00 0.00 0.00 2.24
33 34 7.290948 AGTTGACTTGACCCTGATGATATGATA 59.709 37.037 0.00 0.00 0.00 2.15
34 35 6.100859 AGTTGACTTGACCCTGATGATATGAT 59.899 38.462 0.00 0.00 0.00 2.45
35 36 5.426509 AGTTGACTTGACCCTGATGATATGA 59.573 40.000 0.00 0.00 0.00 2.15
36 37 5.678583 AGTTGACTTGACCCTGATGATATG 58.321 41.667 0.00 0.00 0.00 1.78
37 38 5.965033 AGTTGACTTGACCCTGATGATAT 57.035 39.130 0.00 0.00 0.00 1.63
38 39 5.762179 AAGTTGACTTGACCCTGATGATA 57.238 39.130 0.00 0.00 34.38 2.15
39 40 4.647564 AAGTTGACTTGACCCTGATGAT 57.352 40.909 0.00 0.00 34.38 2.45
40 41 5.762179 ATAAGTTGACTTGACCCTGATGA 57.238 39.130 6.64 0.00 37.40 2.92
41 42 6.708054 GGATATAAGTTGACTTGACCCTGATG 59.292 42.308 6.64 0.00 37.40 3.07
42 43 6.386927 TGGATATAAGTTGACTTGACCCTGAT 59.613 38.462 6.64 0.00 37.40 2.90
43 44 5.724370 TGGATATAAGTTGACTTGACCCTGA 59.276 40.000 6.64 0.00 37.40 3.86
44 45 5.817816 GTGGATATAAGTTGACTTGACCCTG 59.182 44.000 6.64 0.00 37.40 4.45
45 46 5.487488 TGTGGATATAAGTTGACTTGACCCT 59.513 40.000 6.64 0.00 37.40 4.34
46 47 5.741011 TGTGGATATAAGTTGACTTGACCC 58.259 41.667 6.64 3.82 37.40 4.46
47 48 7.681939 TTTGTGGATATAAGTTGACTTGACC 57.318 36.000 6.64 5.45 37.40 4.02
48 49 8.946085 TGATTTGTGGATATAAGTTGACTTGAC 58.054 33.333 6.64 0.00 37.40 3.18
49 50 9.685276 ATGATTTGTGGATATAAGTTGACTTGA 57.315 29.630 6.64 0.00 37.40 3.02
54 55 9.778741 GGAGTATGATTTGTGGATATAAGTTGA 57.221 33.333 0.00 0.00 0.00 3.18
55 56 9.003658 GGGAGTATGATTTGTGGATATAAGTTG 57.996 37.037 0.00 0.00 0.00 3.16
56 57 8.949421 AGGGAGTATGATTTGTGGATATAAGTT 58.051 33.333 0.00 0.00 0.00 2.66
57 58 8.511748 AGGGAGTATGATTTGTGGATATAAGT 57.488 34.615 0.00 0.00 0.00 2.24
58 59 8.043710 GGAGGGAGTATGATTTGTGGATATAAG 58.956 40.741 0.00 0.00 0.00 1.73
59 60 7.310423 CGGAGGGAGTATGATTTGTGGATATAA 60.310 40.741 0.00 0.00 0.00 0.98
60 61 6.154534 CGGAGGGAGTATGATTTGTGGATATA 59.845 42.308 0.00 0.00 0.00 0.86
61 62 5.046304 CGGAGGGAGTATGATTTGTGGATAT 60.046 44.000 0.00 0.00 0.00 1.63
62 63 4.283467 CGGAGGGAGTATGATTTGTGGATA 59.717 45.833 0.00 0.00 0.00 2.59
63 64 3.071602 CGGAGGGAGTATGATTTGTGGAT 59.928 47.826 0.00 0.00 0.00 3.41
64 65 2.434336 CGGAGGGAGTATGATTTGTGGA 59.566 50.000 0.00 0.00 0.00 4.02
65 66 2.170607 ACGGAGGGAGTATGATTTGTGG 59.829 50.000 0.00 0.00 0.00 4.17
66 67 3.458189 GACGGAGGGAGTATGATTTGTG 58.542 50.000 0.00 0.00 0.00 3.33
67 68 2.434702 GGACGGAGGGAGTATGATTTGT 59.565 50.000 0.00 0.00 0.00 2.83
68 69 2.224305 GGGACGGAGGGAGTATGATTTG 60.224 54.545 0.00 0.00 0.00 2.32
69 70 2.047830 GGGACGGAGGGAGTATGATTT 58.952 52.381 0.00 0.00 0.00 2.17
70 71 1.062428 TGGGACGGAGGGAGTATGATT 60.062 52.381 0.00 0.00 0.00 2.57
71 72 0.561184 TGGGACGGAGGGAGTATGAT 59.439 55.000 0.00 0.00 0.00 2.45
72 73 0.561184 ATGGGACGGAGGGAGTATGA 59.439 55.000 0.00 0.00 0.00 2.15
73 74 2.304221 TATGGGACGGAGGGAGTATG 57.696 55.000 0.00 0.00 0.00 2.39
74 75 3.173965 CATTATGGGACGGAGGGAGTAT 58.826 50.000 0.00 0.00 0.00 2.12
75 76 2.605257 CATTATGGGACGGAGGGAGTA 58.395 52.381 0.00 0.00 0.00 2.59
76 77 1.424638 CATTATGGGACGGAGGGAGT 58.575 55.000 0.00 0.00 0.00 3.85
77 78 0.035458 GCATTATGGGACGGAGGGAG 59.965 60.000 0.00 0.00 0.00 4.30
78 79 0.399949 AGCATTATGGGACGGAGGGA 60.400 55.000 0.00 0.00 0.00 4.20
79 80 0.474184 AAGCATTATGGGACGGAGGG 59.526 55.000 0.00 0.00 0.00 4.30
80 81 2.104111 TGTAAGCATTATGGGACGGAGG 59.896 50.000 0.00 0.00 30.46 4.30
81 82 3.469008 TGTAAGCATTATGGGACGGAG 57.531 47.619 0.00 0.00 30.46 4.63
82 83 4.431416 AATGTAAGCATTATGGGACGGA 57.569 40.909 0.00 0.00 42.96 4.69
92 93 5.327732 CCTCCATCCCATAATGTAAGCATT 58.672 41.667 0.00 0.00 46.14 3.56
93 94 4.264083 CCCTCCATCCCATAATGTAAGCAT 60.264 45.833 0.00 0.00 36.80 3.79
94 95 3.074390 CCCTCCATCCCATAATGTAAGCA 59.926 47.826 0.00 0.00 0.00 3.91
95 96 3.330701 TCCCTCCATCCCATAATGTAAGC 59.669 47.826 0.00 0.00 0.00 3.09
96 97 4.599241 ACTCCCTCCATCCCATAATGTAAG 59.401 45.833 0.00 0.00 0.00 2.34
97 98 4.577096 ACTCCCTCCATCCCATAATGTAA 58.423 43.478 0.00 0.00 0.00 2.41
98 99 4.228237 ACTCCCTCCATCCCATAATGTA 57.772 45.455 0.00 0.00 0.00 2.29
99 100 3.080660 ACTCCCTCCATCCCATAATGT 57.919 47.619 0.00 0.00 0.00 2.71
100 101 4.171234 ACTACTCCCTCCATCCCATAATG 58.829 47.826 0.00 0.00 0.00 1.90
101 102 4.510303 ACTACTCCCTCCATCCCATAAT 57.490 45.455 0.00 0.00 0.00 1.28
102 103 5.427857 TTACTACTCCCTCCATCCCATAA 57.572 43.478 0.00 0.00 0.00 1.90
103 104 5.102783 AGTTTACTACTCCCTCCATCCCATA 60.103 44.000 0.00 0.00 28.23 2.74
104 105 3.974642 GTTTACTACTCCCTCCATCCCAT 59.025 47.826 0.00 0.00 0.00 4.00
105 106 3.013648 AGTTTACTACTCCCTCCATCCCA 59.986 47.826 0.00 0.00 28.23 4.37
106 107 3.655384 AGTTTACTACTCCCTCCATCCC 58.345 50.000 0.00 0.00 28.23 3.85
107 108 4.281435 GCTAGTTTACTACTCCCTCCATCC 59.719 50.000 0.00 0.00 38.33 3.51
108 109 4.894114 TGCTAGTTTACTACTCCCTCCATC 59.106 45.833 0.00 0.00 38.33 3.51
109 110 4.880164 TGCTAGTTTACTACTCCCTCCAT 58.120 43.478 0.00 0.00 38.33 3.41
110 111 4.326600 TGCTAGTTTACTACTCCCTCCA 57.673 45.455 0.00 0.00 38.33 3.86
111 112 5.672421 TTTGCTAGTTTACTACTCCCTCC 57.328 43.478 0.00 0.00 38.33 4.30
112 113 6.641474 ACATTTGCTAGTTTACTACTCCCTC 58.359 40.000 0.00 0.00 38.33 4.30
113 114 6.622427 ACATTTGCTAGTTTACTACTCCCT 57.378 37.500 0.00 0.00 38.33 4.20
114 115 7.683437 AAACATTTGCTAGTTTACTACTCCC 57.317 36.000 0.00 0.00 38.33 4.30
126 127 8.831715 AAAAATTCTGGGTAAACATTTGCTAG 57.168 30.769 0.00 0.00 0.00 3.42
171 172 8.352201 GCTGCTAACCATATGTATGATTTTTGA 58.648 33.333 1.24 0.00 35.75 2.69
173 174 8.469309 AGCTGCTAACCATATGTATGATTTTT 57.531 30.769 0.00 0.00 35.75 1.94
266 267 2.359602 ACGAGAGACGAGGCGGAA 60.360 61.111 0.00 0.00 45.77 4.30
325 326 1.990160 AAAACAGAGCCCACCCGACA 61.990 55.000 0.00 0.00 0.00 4.35
327 328 1.228124 CAAAACAGAGCCCACCCGA 60.228 57.895 0.00 0.00 0.00 5.14
332 333 2.957402 ACATCTCAAAACAGAGCCCA 57.043 45.000 0.00 0.00 35.59 5.36
403 407 2.160721 TCCATCTTTAGGGAGTCGCT 57.839 50.000 14.80 14.80 30.39 4.93
444 448 4.636435 CGCACCACCGGAAAGGGT 62.636 66.667 9.46 7.30 46.96 4.34
448 452 1.290955 CTAGACGCACCACCGGAAA 59.709 57.895 9.46 0.00 0.00 3.13
540 544 4.436242 AGACACACGAATGTAGACGAAT 57.564 40.909 0.00 0.00 36.72 3.34
588 592 4.785512 CGCTGCCGACGAAGAGCT 62.786 66.667 0.00 0.00 36.29 4.09
618 625 1.073722 CCCCATATGACCAGCGCAT 59.926 57.895 11.47 0.00 0.00 4.73
645 652 6.093404 GTGATAGACAGTCAAGAATTCGTCA 58.907 40.000 2.66 0.00 0.00 4.35
651 658 7.220030 ACTTGTTGTGATAGACAGTCAAGAAT 58.780 34.615 19.15 0.00 43.44 2.40
655 662 7.120579 ACAAAACTTGTTGTGATAGACAGTCAA 59.879 33.333 10.31 0.00 42.22 3.18
666 673 1.133407 GCCGGACAAAACTTGTTGTGA 59.867 47.619 5.05 0.00 45.52 3.58
720 727 2.048222 CACTGGAGCGAGCCGAAA 60.048 61.111 0.00 0.00 0.00 3.46
732 739 0.179215 GCGACGAATTCAAGCACTGG 60.179 55.000 6.22 0.00 0.00 4.00
742 749 1.183549 AGACCACCTAGCGACGAATT 58.816 50.000 0.00 0.00 0.00 2.17
854 862 0.744414 CCAAGCCACCTCACGTATGG 60.744 60.000 4.67 4.67 36.51 2.74
859 867 3.357079 GCACCAAGCCACCTCACG 61.357 66.667 0.00 0.00 37.23 4.35
879 887 2.082231 CAGTCTGCCAGCCATATATGC 58.918 52.381 7.24 3.40 0.00 3.14
880 888 2.708051 CCAGTCTGCCAGCCATATATG 58.292 52.381 5.68 5.68 0.00 1.78
883 891 1.150081 GCCAGTCTGCCAGCCATAT 59.850 57.895 0.00 0.00 0.00 1.78
884 892 2.261430 CTGCCAGTCTGCCAGCCATA 62.261 60.000 0.00 0.00 0.00 2.74
885 893 3.640257 CTGCCAGTCTGCCAGCCAT 62.640 63.158 0.00 0.00 0.00 4.40
887 895 3.972971 CTCTGCCAGTCTGCCAGCC 62.973 68.421 5.94 0.00 0.00 4.85
890 898 3.324930 CCCTCTGCCAGTCTGCCA 61.325 66.667 0.00 0.00 0.00 4.92
892 900 1.153208 CATCCCTCTGCCAGTCTGC 60.153 63.158 0.00 0.00 0.00 4.26
893 901 1.525923 CCATCCCTCTGCCAGTCTG 59.474 63.158 0.00 0.00 0.00 3.51
894 902 2.373707 GCCATCCCTCTGCCAGTCT 61.374 63.158 0.00 0.00 0.00 3.24
895 903 2.191641 GCCATCCCTCTGCCAGTC 59.808 66.667 0.00 0.00 0.00 3.51
896 904 2.611800 TGCCATCCCTCTGCCAGT 60.612 61.111 0.00 0.00 0.00 4.00
897 905 2.124403 GTGCCATCCCTCTGCCAG 60.124 66.667 0.00 0.00 0.00 4.85
898 906 3.731728 GGTGCCATCCCTCTGCCA 61.732 66.667 0.00 0.00 0.00 4.92
899 907 3.711059 CTGGTGCCATCCCTCTGCC 62.711 68.421 0.00 0.00 0.00 4.85
900 908 2.124403 CTGGTGCCATCCCTCTGC 60.124 66.667 0.00 0.00 0.00 4.26
901 909 2.124403 GCTGGTGCCATCCCTCTG 60.124 66.667 0.00 0.00 0.00 3.35
902 910 2.285969 AGCTGGTGCCATCCCTCT 60.286 61.111 0.00 0.00 40.80 3.69
903 911 1.992519 ATGAGCTGGTGCCATCCCTC 61.993 60.000 0.00 0.00 40.80 4.30
904 912 1.578215 AATGAGCTGGTGCCATCCCT 61.578 55.000 0.00 0.00 40.80 4.20
905 913 0.685458 AAATGAGCTGGTGCCATCCC 60.685 55.000 0.00 0.00 40.80 3.85
906 914 0.743097 GAAATGAGCTGGTGCCATCC 59.257 55.000 0.00 0.00 40.80 3.51
928 936 2.966309 GACTGCCGTTTTGGAGCCG 61.966 63.158 0.00 0.00 42.00 5.52
963 971 2.561419 GGAGCGTGCCCACTTATATAGA 59.439 50.000 0.00 0.00 0.00 1.98
969 977 1.220749 GATGGAGCGTGCCCACTTA 59.779 57.895 4.51 0.00 36.36 2.24
971 979 3.321648 TGATGGAGCGTGCCCACT 61.322 61.111 4.51 0.00 36.36 4.00
972 980 3.127533 GTGATGGAGCGTGCCCAC 61.128 66.667 4.51 0.00 36.36 4.61
993 1001 1.458064 GCAAGTGTGTTGATGCATTGC 59.542 47.619 0.00 0.46 38.63 3.56
1040 1060 5.967088 TCATGTTCACTTCCTCTTACTAGC 58.033 41.667 0.00 0.00 0.00 3.42
1050 1070 5.053145 CCTATACTGCTCATGTTCACTTCC 58.947 45.833 0.00 0.00 0.00 3.46
1105 1125 2.537401 CACGAAATCGACCCCTACTTC 58.463 52.381 10.16 0.00 43.02 3.01
1801 1824 4.539235 CCCCTGGGGTTTTTCCTG 57.461 61.111 24.54 0.00 38.25 3.86
1833 1856 1.416401 AGTTTGTCTTCGAGGGCTTCA 59.584 47.619 0.00 0.00 0.00 3.02
1932 1970 0.325203 AGGAGAGGCAGAGGTCCTTC 60.325 60.000 0.00 0.00 35.84 3.46
1934 1972 0.325203 GAAGGAGAGGCAGAGGTCCT 60.325 60.000 0.00 0.00 41.42 3.85
1986 2024 2.520982 TCGGGCAGAGGGTATCCG 60.521 66.667 0.00 0.00 41.80 4.18
2016 2054 1.210931 CACGAAGTCGAGGGCGTTA 59.789 57.895 7.87 0.00 41.61 3.18
2062 2100 1.599797 CGGTTCCTCCTTTGCCGTT 60.600 57.895 0.00 0.00 37.87 4.44
2076 2114 1.213537 CACACGGTCGGTATCGGTT 59.786 57.895 0.00 0.00 36.95 4.44
2091 2129 1.147376 CACAAGGACCCGGAACACA 59.853 57.895 0.73 0.00 0.00 3.72
2160 2198 1.609580 GCACACCATCCACTAACCGAA 60.610 52.381 0.00 0.00 0.00 4.30
2164 2202 2.614057 GCATAGCACACCATCCACTAAC 59.386 50.000 0.00 0.00 0.00 2.34
2166 2204 2.103094 GAGCATAGCACACCATCCACTA 59.897 50.000 0.00 0.00 0.00 2.74
2172 2210 2.795231 AGTTGAGCATAGCACACCAT 57.205 45.000 0.00 0.00 0.00 3.55
2178 2216 2.752030 AGGAGGTAGTTGAGCATAGCA 58.248 47.619 0.00 0.00 0.00 3.49
2181 2219 3.132289 CGGAAAGGAGGTAGTTGAGCATA 59.868 47.826 0.00 0.00 0.00 3.14
2182 2220 2.093447 CGGAAAGGAGGTAGTTGAGCAT 60.093 50.000 0.00 0.00 0.00 3.79
2184 2222 1.275573 ACGGAAAGGAGGTAGTTGAGC 59.724 52.381 0.00 0.00 0.00 4.26
2208 2246 0.733150 CGATAGCTCCGGCGATGATA 59.267 55.000 9.30 3.76 44.37 2.15
2277 2316 3.502875 GGGGCAGAAGGGGGATCC 61.503 72.222 1.92 1.92 0.00 3.36
2278 2317 2.696125 TGGGGCAGAAGGGGGATC 60.696 66.667 0.00 0.00 0.00 3.36
2286 2325 3.256960 GGGACAGGTGGGGCAGAA 61.257 66.667 0.00 0.00 0.00 3.02
2335 2380 4.154918 CAGCAGGAGGAACAAAGTGATAAC 59.845 45.833 0.00 0.00 0.00 1.89
2337 2382 3.307691 CCAGCAGGAGGAACAAAGTGATA 60.308 47.826 0.00 0.00 36.89 2.15
2392 2437 4.980805 GTTGGAGCACACGCCGGA 62.981 66.667 5.05 0.00 38.90 5.14
2435 2480 2.351111 GTCTTGCTGCTTCTGATGTAGC 59.649 50.000 21.20 21.20 42.17 3.58
2508 2559 0.662619 TCTTGTTGCTCCAGCGTTTG 59.337 50.000 0.00 0.00 45.83 2.93
2511 2562 1.016130 CGATCTTGTTGCTCCAGCGT 61.016 55.000 0.00 0.00 45.83 5.07
2521 2572 1.743772 CGAATCCTGCCCGATCTTGTT 60.744 52.381 0.00 0.00 0.00 2.83
2536 2587 2.514824 GGGCTCCAGCACCGAATC 60.515 66.667 0.03 0.00 44.36 2.52
2571 2622 1.189524 TCTCGGAGAAAAGCCCGGAA 61.190 55.000 0.73 0.00 45.36 4.30
2574 2625 1.362406 GCTTCTCGGAGAAAAGCCCG 61.362 60.000 20.08 9.45 46.57 6.13
2586 2637 2.579787 CGCCCGTACAGCTTCTCG 60.580 66.667 3.63 0.00 0.00 4.04
2640 2700 3.858868 GAGCACCGCGTCCTTCACA 62.859 63.158 4.92 0.00 0.00 3.58
2740 2800 2.360350 CGACCATGCCCAGCTGTT 60.360 61.111 13.81 0.00 0.00 3.16
2895 2961 2.734175 CGCGCAGTAGTAGGACAAATGA 60.734 50.000 8.75 0.00 0.00 2.57
2988 3054 0.037605 CCGCCTTCACGTCCTTTACT 60.038 55.000 0.00 0.00 0.00 2.24
2991 3057 2.668550 GCCGCCTTCACGTCCTTT 60.669 61.111 0.00 0.00 0.00 3.11
3222 3288 1.164041 CGTGGCCCTTGACGTTCTTT 61.164 55.000 0.00 0.00 0.00 2.52
3268 3334 2.202362 CCAGACGAGCGTGACGAG 60.202 66.667 10.10 1.04 34.70 4.18
3461 3532 8.871686 AAGATTTTGATTTACTTGCGAAACTT 57.128 26.923 0.00 0.00 0.00 2.66
3633 3939 8.794335 ATCTGGTTTAAGAGTTTTAGATGGTC 57.206 34.615 0.00 0.00 0.00 4.02
3760 4072 9.754382 AGTTATATAAATTTTGCATGAAGCCAG 57.246 29.630 0.00 0.00 44.83 4.85
3818 4135 2.264794 GAGTCGGGTCCGCACAAT 59.735 61.111 4.27 0.00 39.59 2.71
3819 4136 4.351938 CGAGTCGGGTCCGCACAA 62.352 66.667 4.10 0.00 39.59 3.33
3823 4140 2.506438 CTTTCGAGTCGGGTCCGC 60.506 66.667 13.54 0.34 39.59 5.54
3836 5764 3.441922 GCCAGAGATTTCAACCTCCTTTC 59.558 47.826 0.00 0.00 0.00 2.62
3877 6184 0.598680 TTTGAAATTTGGCGCCCACG 60.599 50.000 26.77 0.00 44.07 4.94
3928 6240 9.534565 TGTCTCTCTGTCAAATATGTAATTAGC 57.465 33.333 0.00 0.00 0.00 3.09
4002 6314 9.724839 CTTGTCAAAGCATTTCAAATCAATTTT 57.275 25.926 0.00 0.00 35.03 1.82
4005 6317 7.711772 TGTCTTGTCAAAGCATTTCAAATCAAT 59.288 29.630 0.00 0.00 35.03 2.57
4006 6318 7.040494 TGTCTTGTCAAAGCATTTCAAATCAA 58.960 30.769 0.00 0.00 35.03 2.57
4007 6319 6.571605 TGTCTTGTCAAAGCATTTCAAATCA 58.428 32.000 0.00 0.00 35.03 2.57
4023 6335 7.602517 ATTGCAAAGAGTAGTATGTCTTGTC 57.397 36.000 1.71 0.00 33.21 3.18
4030 6342 9.197694 GGAGTACATATTGCAAAGAGTAGTATG 57.802 37.037 1.71 7.78 38.11 2.39
4064 6377 8.500753 ACCAAATCGTATATGCAGACTAAAAA 57.499 30.769 0.00 0.00 0.00 1.94
4065 6378 7.766738 TGACCAAATCGTATATGCAGACTAAAA 59.233 33.333 0.00 0.00 0.00 1.52
4066 6379 7.269316 TGACCAAATCGTATATGCAGACTAAA 58.731 34.615 0.00 0.00 0.00 1.85
4067 6380 6.811954 TGACCAAATCGTATATGCAGACTAA 58.188 36.000 0.00 0.00 0.00 2.24
4068 6381 6.399639 TGACCAAATCGTATATGCAGACTA 57.600 37.500 0.00 0.00 0.00 2.59
4069 6382 5.276461 TGACCAAATCGTATATGCAGACT 57.724 39.130 0.00 0.00 0.00 3.24
4070 6383 5.984233 TTGACCAAATCGTATATGCAGAC 57.016 39.130 0.00 0.00 0.00 3.51
4071 6384 6.112734 ACTTTGACCAAATCGTATATGCAGA 58.887 36.000 0.00 0.00 0.00 4.26
4072 6385 6.037062 TGACTTTGACCAAATCGTATATGCAG 59.963 38.462 0.00 0.00 0.00 4.41
4073 6386 5.877564 TGACTTTGACCAAATCGTATATGCA 59.122 36.000 0.00 0.00 0.00 3.96
4074 6387 6.358118 TGACTTTGACCAAATCGTATATGC 57.642 37.500 0.00 0.00 0.00 3.14
4075 6388 8.450964 AGTTTGACTTTGACCAAATCGTATATG 58.549 33.333 0.00 0.00 35.14 1.78
4076 6389 8.561738 AGTTTGACTTTGACCAAATCGTATAT 57.438 30.769 0.00 0.00 35.14 0.86
4077 6390 7.972832 AGTTTGACTTTGACCAAATCGTATA 57.027 32.000 0.00 0.00 35.14 1.47
4078 6391 6.877611 AGTTTGACTTTGACCAAATCGTAT 57.122 33.333 0.00 0.00 35.14 3.06
4079 6392 6.687081 AAGTTTGACTTTGACCAAATCGTA 57.313 33.333 0.00 0.00 34.11 3.43
4080 6393 5.576447 AAGTTTGACTTTGACCAAATCGT 57.424 34.783 0.00 0.00 34.11 3.73
4131 6444 8.458843 GCATTGGTATTGTAGTTGTTGATACTT 58.541 33.333 0.00 0.00 0.00 2.24
4132 6445 7.829211 AGCATTGGTATTGTAGTTGTTGATACT 59.171 33.333 0.00 0.00 0.00 2.12
4133 6446 7.985476 AGCATTGGTATTGTAGTTGTTGATAC 58.015 34.615 0.00 0.00 0.00 2.24
4134 6447 9.845740 ATAGCATTGGTATTGTAGTTGTTGATA 57.154 29.630 2.53 0.00 0.00 2.15
4135 6448 8.752005 ATAGCATTGGTATTGTAGTTGTTGAT 57.248 30.769 2.53 0.00 0.00 2.57
4136 6449 9.845740 ATATAGCATTGGTATTGTAGTTGTTGA 57.154 29.630 13.18 0.00 0.00 3.18
4137 6450 9.882996 CATATAGCATTGGTATTGTAGTTGTTG 57.117 33.333 13.18 0.00 0.00 3.33
4138 6451 9.066892 CCATATAGCATTGGTATTGTAGTTGTT 57.933 33.333 13.18 0.00 0.00 2.83
4139 6452 8.217799 ACCATATAGCATTGGTATTGTAGTTGT 58.782 33.333 13.18 3.65 44.36 3.32
4140 6453 8.621532 ACCATATAGCATTGGTATTGTAGTTG 57.378 34.615 13.18 3.72 44.36 3.16
4177 6490 9.955208 GTCAATATTGTTAGATGCATCATGAAA 57.045 29.630 27.81 16.41 0.00 2.69
4178 6491 9.346005 AGTCAATATTGTTAGATGCATCATGAA 57.654 29.630 27.81 15.61 0.00 2.57
4179 6492 8.913487 AGTCAATATTGTTAGATGCATCATGA 57.087 30.769 27.81 10.43 0.00 3.07
4180 6493 9.608617 GAAGTCAATATTGTTAGATGCATCATG 57.391 33.333 27.81 11.79 0.00 3.07
4181 6494 9.346005 TGAAGTCAATATTGTTAGATGCATCAT 57.654 29.630 27.81 14.55 0.00 2.45
4182 6495 8.735692 TGAAGTCAATATTGTTAGATGCATCA 57.264 30.769 27.81 11.65 0.00 3.07
4186 6499 9.964253 CGATATGAAGTCAATATTGTTAGATGC 57.036 33.333 14.97 1.52 0.00 3.91
4275 6588 9.046296 CGTTTCCTTCTAGTTTGCATATAAGAT 57.954 33.333 0.00 0.00 0.00 2.40
4276 6589 7.494625 CCGTTTCCTTCTAGTTTGCATATAAGA 59.505 37.037 0.00 0.00 0.00 2.10
4277 6590 7.494625 TCCGTTTCCTTCTAGTTTGCATATAAG 59.505 37.037 0.00 0.00 0.00 1.73
4278 6591 7.332557 TCCGTTTCCTTCTAGTTTGCATATAA 58.667 34.615 0.00 0.00 0.00 0.98
4279 6592 6.880484 TCCGTTTCCTTCTAGTTTGCATATA 58.120 36.000 0.00 0.00 0.00 0.86
4280 6593 5.741011 TCCGTTTCCTTCTAGTTTGCATAT 58.259 37.500 0.00 0.00 0.00 1.78
4281 6594 5.155278 TCCGTTTCCTTCTAGTTTGCATA 57.845 39.130 0.00 0.00 0.00 3.14
4282 6595 4.003648 CTCCGTTTCCTTCTAGTTTGCAT 58.996 43.478 0.00 0.00 0.00 3.96
4283 6596 3.399330 CTCCGTTTCCTTCTAGTTTGCA 58.601 45.455 0.00 0.00 0.00 4.08
4284 6597 2.742589 CCTCCGTTTCCTTCTAGTTTGC 59.257 50.000 0.00 0.00 0.00 3.68
4285 6598 3.007614 TCCCTCCGTTTCCTTCTAGTTTG 59.992 47.826 0.00 0.00 0.00 2.93
4286 6599 3.245441 TCCCTCCGTTTCCTTCTAGTTT 58.755 45.455 0.00 0.00 0.00 2.66
4287 6600 2.832733 CTCCCTCCGTTTCCTTCTAGTT 59.167 50.000 0.00 0.00 0.00 2.24
4288 6601 2.225318 ACTCCCTCCGTTTCCTTCTAGT 60.225 50.000 0.00 0.00 0.00 2.57
4289 6602 2.458620 ACTCCCTCCGTTTCCTTCTAG 58.541 52.381 0.00 0.00 0.00 2.43
4290 6603 2.617840 ACTCCCTCCGTTTCCTTCTA 57.382 50.000 0.00 0.00 0.00 2.10
4291 6604 2.617840 TACTCCCTCCGTTTCCTTCT 57.382 50.000 0.00 0.00 0.00 2.85
4292 6605 4.587684 TGATATACTCCCTCCGTTTCCTTC 59.412 45.833 0.00 0.00 0.00 3.46
4293 6606 4.553678 TGATATACTCCCTCCGTTTCCTT 58.446 43.478 0.00 0.00 0.00 3.36
4294 6607 4.194678 TGATATACTCCCTCCGTTTCCT 57.805 45.455 0.00 0.00 0.00 3.36
4295 6608 4.799917 GCTTGATATACTCCCTCCGTTTCC 60.800 50.000 0.00 0.00 0.00 3.13
4296 6609 4.308265 GCTTGATATACTCCCTCCGTTTC 58.692 47.826 0.00 0.00 0.00 2.78
4297 6610 3.071167 GGCTTGATATACTCCCTCCGTTT 59.929 47.826 0.00 0.00 0.00 3.60
4298 6611 2.633481 GGCTTGATATACTCCCTCCGTT 59.367 50.000 0.00 0.00 0.00 4.44
4299 6612 2.249139 GGCTTGATATACTCCCTCCGT 58.751 52.381 0.00 0.00 0.00 4.69
4300 6613 1.202582 CGGCTTGATATACTCCCTCCG 59.797 57.143 0.00 0.00 0.00 4.63
4301 6614 1.066787 GCGGCTTGATATACTCCCTCC 60.067 57.143 0.00 0.00 0.00 4.30
4302 6615 1.896465 AGCGGCTTGATATACTCCCTC 59.104 52.381 0.00 0.00 0.00 4.30
4303 6616 2.016905 AGCGGCTTGATATACTCCCT 57.983 50.000 0.00 0.00 0.00 4.20
4304 6617 4.473477 AATAGCGGCTTGATATACTCCC 57.527 45.455 8.26 0.00 0.00 4.30
4305 6618 4.093556 GCAAATAGCGGCTTGATATACTCC 59.906 45.833 8.26 0.00 0.00 3.85
4306 6619 5.209944 GCAAATAGCGGCTTGATATACTC 57.790 43.478 8.26 0.00 0.00 2.59
4480 6807 3.850374 GCCGATTACAAAAGAAACACGCA 60.850 43.478 0.00 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.