Multiple sequence alignment - TraesCS2B01G103000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G103000 chr2B 100.000 4481 0 0 1 4481 63866318 63861838 0.000000e+00 8275.0
1 TraesCS2B01G103000 chr2B 86.250 2720 311 31 1119 3799 64190902 64193597 0.000000e+00 2892.0
2 TraesCS2B01G103000 chr2B 85.267 2362 263 40 1119 3438 64091621 64089303 0.000000e+00 2355.0
3 TraesCS2B01G103000 chr2B 91.391 302 16 5 587 885 64063898 64063604 5.400000e-109 405.0
4 TraesCS2B01G103000 chr2B 86.532 297 21 6 4201 4481 64088523 64088230 4.350000e-80 309.0
5 TraesCS2B01G103000 chr2B 82.692 104 6 7 598 697 64189328 64189423 1.030000e-11 82.4
6 TraesCS2B01G103000 chr2B 100.000 35 0 0 1 35 722677763 722677797 1.040000e-06 65.8
7 TraesCS2B01G103000 chr2D 91.983 3630 213 38 597 4201 36910465 36914041 0.000000e+00 5020.0
8 TraesCS2B01G103000 chr2D 87.263 3109 334 29 1136 4201 36885987 36889076 0.000000e+00 3491.0
9 TraesCS2B01G103000 chr2D 91.304 299 22 4 4184 4481 36913984 36914279 5.400000e-109 405.0
10 TraesCS2B01G103000 chr2D 90.635 299 22 5 4184 4481 36889019 36889312 4.200000e-105 392.0
11 TraesCS2B01G103000 chr2D 87.857 280 18 6 584 852 36904821 36905095 9.360000e-82 315.0
12 TraesCS2B01G103000 chr2D 100.000 35 0 0 985 1019 36885798 36885832 1.040000e-06 65.8
13 TraesCS2B01G103000 chr2A 94.032 2329 117 12 1131 3441 41620339 41622663 0.000000e+00 3511.0
14 TraesCS2B01G103000 chr2A 88.710 248 13 5 241 486 41607416 41607650 5.670000e-74 289.0
15 TraesCS2B01G103000 chr2A 91.346 208 18 0 36 243 41607117 41607324 7.340000e-73 285.0
16 TraesCS2B01G103000 chr2A 97.600 125 3 0 1016 1140 41609932 41610056 9.760000e-52 215.0
17 TraesCS2B01G103000 chr6A 88.528 462 41 5 3487 3938 555858184 555857725 2.360000e-152 549.0
18 TraesCS2B01G103000 chr6A 97.297 37 0 1 3868 3903 168113107 168113071 1.350000e-05 62.1
19 TraesCS2B01G103000 chr3D 82.328 232 23 8 252 472 456522888 456522664 7.650000e-43 185.0
20 TraesCS2B01G103000 chr4B 80.851 235 34 7 252 477 168181624 168181392 1.660000e-39 174.0
21 TraesCS2B01G103000 chr4B 97.059 34 1 0 531 564 46611378 46611411 1.740000e-04 58.4
22 TraesCS2B01G103000 chr3B 82.234 197 27 1 278 466 602791083 602791279 3.590000e-36 163.0
23 TraesCS2B01G103000 chr3B 97.561 41 1 0 532 572 662015400 662015440 2.240000e-08 71.3
24 TraesCS2B01G103000 chr3B 96.875 32 1 0 492 523 804389143 804389112 2.000000e-03 54.7
25 TraesCS2B01G103000 chr7D 79.295 227 38 3 255 473 168577324 168577099 2.790000e-32 150.0
26 TraesCS2B01G103000 chr4A 73.616 307 49 13 3870 4149 547297029 547297330 6.170000e-14 89.8
27 TraesCS2B01G103000 chr4A 96.875 32 1 0 3870 3901 713101581 713101550 2.000000e-03 54.7
28 TraesCS2B01G103000 chr3A 85.057 87 11 1 485 571 687477648 687477564 2.220000e-13 87.9
29 TraesCS2B01G103000 chr5D 87.324 71 7 1 502 572 498725657 498725725 3.720000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G103000 chr2B 63861838 63866318 4480 True 8275.000000 8275 100.000000 1 4481 1 chr2B.!!$R1 4480
1 TraesCS2B01G103000 chr2B 64189328 64193597 4269 False 1487.200000 2892 84.471000 598 3799 2 chr2B.!!$F2 3201
2 TraesCS2B01G103000 chr2B 64088230 64091621 3391 True 1332.000000 2355 85.899500 1119 4481 2 chr2B.!!$R3 3362
3 TraesCS2B01G103000 chr2D 36910465 36914279 3814 False 2712.500000 5020 91.643500 597 4481 2 chr2D.!!$F3 3884
4 TraesCS2B01G103000 chr2D 36885798 36889312 3514 False 1316.266667 3491 92.632667 985 4481 3 chr2D.!!$F2 3496
5 TraesCS2B01G103000 chr2A 41620339 41622663 2324 False 3511.000000 3511 94.032000 1131 3441 1 chr2A.!!$F1 2310
6 TraesCS2B01G103000 chr2A 41607117 41610056 2939 False 263.000000 289 92.552000 36 1140 3 chr2A.!!$F2 1104

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
941 3938 0.106918 ACTGCCGACTTGGTTCCAAA 60.107 50.000 5.76 0.0 41.21 3.28 F
1775 4830 0.036388 ATGTGCCTCCTTACGTGGTG 60.036 55.000 0.00 0.0 0.00 4.17 F
2247 5317 1.670811 GCGTGGGAGTGGTTTATCATG 59.329 52.381 0.00 0.0 0.00 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2247 5317 1.134367 GAAGGCGATTACCCTTTTGCC 59.866 52.381 0.00 0.0 42.56 4.52 R
3038 6136 1.720301 GTACCTCTGCGTCGTCGAT 59.280 57.895 6.17 0.0 39.71 3.59 R
3859 6992 1.556911 AGAGGCCCTAACATGTCACAG 59.443 52.381 0.00 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.363795 CCGCCAGAGGGGTGTCTA 60.364 66.667 0.00 0.00 46.21 2.59
23 24 2.427245 CCGCCAGAGGGGTGTCTAG 61.427 68.421 0.00 0.00 46.21 2.43
24 25 2.427245 CGCCAGAGGGGTGTCTAGG 61.427 68.421 0.00 0.00 42.49 3.02
25 26 1.306226 GCCAGAGGGGTGTCTAGGT 60.306 63.158 0.00 0.00 39.65 3.08
26 27 0.910088 GCCAGAGGGGTGTCTAGGTT 60.910 60.000 0.00 0.00 39.65 3.50
27 28 1.657804 CCAGAGGGGTGTCTAGGTTT 58.342 55.000 0.00 0.00 0.00 3.27
28 29 1.555533 CCAGAGGGGTGTCTAGGTTTC 59.444 57.143 0.00 0.00 0.00 2.78
29 30 1.204941 CAGAGGGGTGTCTAGGTTTCG 59.795 57.143 0.00 0.00 0.00 3.46
30 31 0.535797 GAGGGGTGTCTAGGTTTCGG 59.464 60.000 0.00 0.00 0.00 4.30
31 32 0.908180 AGGGGTGTCTAGGTTTCGGG 60.908 60.000 0.00 0.00 0.00 5.14
32 33 1.600638 GGGTGTCTAGGTTTCGGGG 59.399 63.158 0.00 0.00 0.00 5.73
33 34 0.906282 GGGTGTCTAGGTTTCGGGGA 60.906 60.000 0.00 0.00 0.00 4.81
34 35 0.978907 GGTGTCTAGGTTTCGGGGAA 59.021 55.000 0.00 0.00 0.00 3.97
35 36 1.338484 GGTGTCTAGGTTTCGGGGAAC 60.338 57.143 0.00 0.00 0.00 3.62
36 37 1.622312 GTGTCTAGGTTTCGGGGAACT 59.378 52.381 0.00 0.00 0.00 3.01
37 38 2.038164 GTGTCTAGGTTTCGGGGAACTT 59.962 50.000 0.00 0.00 0.00 2.66
38 39 2.301009 TGTCTAGGTTTCGGGGAACTTC 59.699 50.000 0.00 0.00 0.00 3.01
45 46 3.131046 GGTTTCGGGGAACTTCGTAGATA 59.869 47.826 0.00 0.00 35.04 1.98
57 58 5.394802 ACTTCGTAGATATAGCATTGCTCG 58.605 41.667 15.81 10.69 36.74 5.03
64 65 6.030548 AGATATAGCATTGCTCGCTTCTAA 57.969 37.500 15.81 0.00 40.44 2.10
71 72 0.178068 TGCTCGCTTCTAACCCCATC 59.822 55.000 0.00 0.00 0.00 3.51
78 79 0.616371 TTCTAACCCCATCACCCACG 59.384 55.000 0.00 0.00 0.00 4.94
95 96 2.978946 CGGCCCCACCCACAACTAT 61.979 63.158 0.00 0.00 33.26 2.12
97 98 0.182775 GGCCCCACCCACAACTATAG 59.817 60.000 0.00 0.00 0.00 1.31
99 100 1.213296 CCCCACCCACAACTATAGCT 58.787 55.000 0.00 0.00 0.00 3.32
187 188 1.831736 CTCCTGTGGGGACGACTTATT 59.168 52.381 0.00 0.00 39.58 1.40
196 197 3.307199 GGGGACGACTTATTTGAGGTCAA 60.307 47.826 0.00 0.00 0.00 3.18
198 199 4.562963 GGGACGACTTATTTGAGGTCAACT 60.563 45.833 0.00 0.00 35.28 3.16
264 359 6.451064 ACAAGGTAGTTTTGACTTTTCTGG 57.549 37.500 0.00 0.00 0.00 3.86
271 366 6.196079 AGTTTTGACTTTTCTGGTCTTCAC 57.804 37.500 0.00 0.00 35.04 3.18
310 405 8.408601 ACTATGATTTTCAGTTATTGCATGTCC 58.591 33.333 0.00 0.00 0.00 4.02
311 406 6.587206 TGATTTTCAGTTATTGCATGTCCA 57.413 33.333 0.00 0.00 0.00 4.02
359 454 9.466497 AACTGTTTTGGAAGACATATATGATGT 57.534 29.630 19.63 0.00 34.52 3.06
361 456 9.726232 CTGTTTTGGAAGACATATATGATGTTG 57.274 33.333 19.63 0.00 31.52 3.33
362 457 8.190122 TGTTTTGGAAGACATATATGATGTTGC 58.810 33.333 19.63 13.38 31.52 4.17
377 472 6.795098 TGATGTTGCCGGTTATACATATTC 57.205 37.500 1.90 0.00 31.76 1.75
407 502 9.906660 CCATGCATTTTTATATGTATTAACGGT 57.093 29.630 0.00 0.00 29.84 4.83
443 538 5.299782 ACCAAATACCGTTTAAAGTCAAGCA 59.700 36.000 0.00 0.00 0.00 3.91
444 539 6.015772 ACCAAATACCGTTTAAAGTCAAGCAT 60.016 34.615 0.00 0.00 0.00 3.79
446 541 3.282831 ACCGTTTAAAGTCAAGCATGC 57.717 42.857 10.51 10.51 0.00 4.06
447 542 2.884639 ACCGTTTAAAGTCAAGCATGCT 59.115 40.909 16.30 16.30 0.00 3.79
453 548 6.582295 CGTTTAAAGTCAAGCATGCTTTACAT 59.418 34.615 34.48 25.63 40.66 2.29
457 552 9.973450 TTAAAGTCAAGCATGCTTTACATTTTA 57.027 25.926 34.48 27.95 36.64 1.52
486 581 6.208994 AGGAGGGAGTACGACATGAATATTAC 59.791 42.308 0.00 0.00 0.00 1.89
487 582 6.208994 GGAGGGAGTACGACATGAATATTACT 59.791 42.308 0.00 0.00 0.00 2.24
488 583 7.216973 AGGGAGTACGACATGAATATTACTC 57.783 40.000 0.00 7.77 36.33 2.59
489 584 7.005296 AGGGAGTACGACATGAATATTACTCT 58.995 38.462 0.00 0.00 36.96 3.24
490 585 7.175293 AGGGAGTACGACATGAATATTACTCTC 59.825 40.741 0.00 7.91 37.33 3.20
491 586 7.175293 GGGAGTACGACATGAATATTACTCTCT 59.825 40.741 0.00 0.00 35.18 3.10
492 587 8.231837 GGAGTACGACATGAATATTACTCTCTC 58.768 40.741 0.00 0.00 36.96 3.20
493 588 8.101654 AGTACGACATGAATATTACTCTCTCC 57.898 38.462 0.00 0.00 0.00 3.71
494 589 6.961360 ACGACATGAATATTACTCTCTCCA 57.039 37.500 0.00 0.00 0.00 3.86
495 590 7.531857 ACGACATGAATATTACTCTCTCCAT 57.468 36.000 0.00 0.00 0.00 3.41
496 591 8.637196 ACGACATGAATATTACTCTCTCCATA 57.363 34.615 0.00 0.00 0.00 2.74
497 592 9.078990 ACGACATGAATATTACTCTCTCCATAA 57.921 33.333 0.00 0.00 0.00 1.90
498 593 9.914131 CGACATGAATATTACTCTCTCCATAAA 57.086 33.333 0.00 0.00 0.00 1.40
531 626 8.767478 AAAAGCGTTTATAGAGTACTAAAGCA 57.233 30.769 13.35 0.00 32.04 3.91
532 627 7.988904 AAGCGTTTATAGAGTACTAAAGCAG 57.011 36.000 13.35 1.01 32.04 4.24
533 628 7.098074 AGCGTTTATAGAGTACTAAAGCAGT 57.902 36.000 13.35 0.00 41.62 4.40
534 629 6.973474 AGCGTTTATAGAGTACTAAAGCAGTG 59.027 38.462 13.35 0.00 38.24 3.66
535 630 6.971184 GCGTTTATAGAGTACTAAAGCAGTGA 59.029 38.462 0.00 0.00 38.24 3.41
536 631 7.648510 GCGTTTATAGAGTACTAAAGCAGTGAT 59.351 37.037 0.00 0.00 38.24 3.06
537 632 9.171701 CGTTTATAGAGTACTAAAGCAGTGATC 57.828 37.037 0.00 0.00 38.24 2.92
544 639 8.754080 AGAGTACTAAAGCAGTGATCTAAATGT 58.246 33.333 0.00 0.00 38.24 2.71
545 640 9.372369 GAGTACTAAAGCAGTGATCTAAATGTT 57.628 33.333 0.00 0.00 38.24 2.71
546 641 9.726438 AGTACTAAAGCAGTGATCTAAATGTTT 57.274 29.630 0.00 0.00 38.24 2.83
629 724 5.591067 TGGATATGACAGTATGACGTGTACA 59.409 40.000 0.00 0.00 39.69 2.90
632 727 2.490509 TGACAGTATGACGTGTACAGGG 59.509 50.000 19.03 6.42 39.69 4.45
633 728 1.822990 ACAGTATGACGTGTACAGGGG 59.177 52.381 19.03 3.93 39.69 4.79
635 730 2.097825 AGTATGACGTGTACAGGGGAC 58.902 52.381 19.03 10.75 0.00 4.46
637 732 0.895530 ATGACGTGTACAGGGGACAG 59.104 55.000 19.03 0.00 0.00 3.51
784 2930 8.504005 TCTCGACCAAATAAAGAAGAAATCAAC 58.496 33.333 0.00 0.00 0.00 3.18
809 3038 1.802960 CAAAGACAGCAGCTGTGGTAG 59.197 52.381 33.03 15.43 45.44 3.18
812 3061 1.546476 AGACAGCAGCTGTGGTAGTAC 59.454 52.381 33.03 15.82 45.44 2.73
845 3094 5.708230 TCAAGTCAACTTATACCCGCAAATT 59.292 36.000 0.00 0.00 34.28 1.82
869 3118 0.891904 CCCCTTTCCCGCTCGAAAAA 60.892 55.000 0.00 0.00 31.56 1.94
874 3123 0.658897 TTCCCGCTCGAAAAACACAC 59.341 50.000 0.00 0.00 0.00 3.82
885 3882 0.653636 AAAACACACTGCACGTACGG 59.346 50.000 21.06 9.73 0.00 4.02
888 3885 2.660552 ACACTGCACGTACGGCAC 60.661 61.111 22.10 11.37 36.11 5.01
936 3933 2.030562 CCGACTGCCGACTTGGTT 59.969 61.111 0.00 0.00 41.76 3.67
940 3937 0.534203 GACTGCCGACTTGGTTCCAA 60.534 55.000 4.17 4.17 41.21 3.53
941 3938 0.106918 ACTGCCGACTTGGTTCCAAA 60.107 50.000 5.76 0.00 41.21 3.28
942 3939 0.310854 CTGCCGACTTGGTTCCAAAC 59.689 55.000 5.76 2.87 41.21 2.93
948 3945 2.124236 TTGGTTCCAAACGCCGGT 60.124 55.556 1.90 0.00 0.00 5.28
949 3946 2.125202 CTTGGTTCCAAACGCCGGTC 62.125 60.000 1.90 0.00 0.00 4.79
950 3947 2.592287 GGTTCCAAACGCCGGTCA 60.592 61.111 1.90 0.00 0.00 4.02
951 3948 1.969589 GGTTCCAAACGCCGGTCAT 60.970 57.895 1.90 0.00 0.00 3.06
952 3949 1.209127 GTTCCAAACGCCGGTCATG 59.791 57.895 1.90 0.00 0.00 3.07
953 3950 1.969064 TTCCAAACGCCGGTCATGG 60.969 57.895 1.90 7.35 35.46 3.66
981 3978 1.466167 CAGCTCATTTCAGTGGTTCCG 59.534 52.381 0.00 0.00 0.00 4.30
1098 4135 0.808755 TACGAGCAGCACGATTCAGA 59.191 50.000 19.68 0.00 34.70 3.27
1344 4399 1.971357 AGAAAGTCGAGGAAGGCAAGA 59.029 47.619 0.00 0.00 0.00 3.02
1559 4614 0.585357 GCCTCATCGTGATGTGCATC 59.415 55.000 16.53 5.30 39.72 3.91
1581 4636 3.918253 GAGGCGACATGGTTGGGCA 62.918 63.158 0.00 0.00 0.00 5.36
1583 4638 1.453015 GGCGACATGGTTGGGCATA 60.453 57.895 0.00 0.00 0.00 3.14
1585 4640 0.748005 GCGACATGGTTGGGCATACT 60.748 55.000 0.00 0.00 0.00 2.12
1640 4695 2.031674 GCTTTGCCAAGGTGGTGCTT 62.032 55.000 0.00 0.00 40.46 3.91
1673 4728 1.377725 CTTCATGGCGGGCAACTCT 60.378 57.895 8.78 0.00 0.00 3.24
1727 4782 1.522355 CTACATGGCCCAGCTCGTG 60.522 63.158 0.00 0.00 0.00 4.35
1754 4809 4.883354 GCGGAGGAGGGCAATGGG 62.883 72.222 0.00 0.00 0.00 4.00
1775 4830 0.036388 ATGTGCCTCCTTACGTGGTG 60.036 55.000 0.00 0.00 0.00 4.17
2081 5151 3.056328 GGCAAAGGAGGCACCGAC 61.056 66.667 0.00 0.00 44.74 4.79
2216 5286 2.544685 CTTTCGGTTCTCATCATCGCT 58.455 47.619 0.00 0.00 0.00 4.93
2247 5317 1.670811 GCGTGGGAGTGGTTTATCATG 59.329 52.381 0.00 0.00 0.00 3.07
2355 5438 2.005606 TTTGTTCCTCCTGCTGGCCA 62.006 55.000 4.71 4.71 0.00 5.36
2485 5568 2.506217 TGACGCGGCGCTAGAAAG 60.506 61.111 30.54 15.49 0.00 2.62
2618 5710 4.519437 CGCGCAGGGCTGATGAGA 62.519 66.667 8.75 0.00 40.44 3.27
2708 5800 4.947147 AAAGGAAGCACGCCGGCA 62.947 61.111 28.98 0.00 35.83 5.69
2857 5955 4.183686 GTACTCGCACGCGGCCTA 62.184 66.667 12.47 0.16 40.31 3.93
3147 6245 2.436115 GCTTGGTGGAGGCGTACC 60.436 66.667 1.63 1.63 37.48 3.34
3212 6310 0.803768 CGGAGATGGTGCTCTTCGTG 60.804 60.000 0.00 0.00 39.06 4.35
3419 6537 4.099419 TGGAAGCTTCTTTTGTTTCCCTTC 59.901 41.667 25.05 4.70 37.17 3.46
3442 6560 9.493206 CTTCTTAGACTAGATCGTTGTAAGTTC 57.507 37.037 0.00 0.00 0.00 3.01
3459 6577 7.790000 TGTAAGTTCATTAGTTTCGCAAGTAC 58.210 34.615 0.00 0.00 39.48 2.73
3460 6578 7.654520 TGTAAGTTCATTAGTTTCGCAAGTACT 59.345 33.333 0.00 0.00 37.20 2.73
3461 6579 6.707599 AGTTCATTAGTTTCGCAAGTACTC 57.292 37.500 0.00 0.00 35.56 2.59
3462 6580 6.456501 AGTTCATTAGTTTCGCAAGTACTCT 58.543 36.000 0.00 0.00 35.56 3.24
3463 6581 6.586844 AGTTCATTAGTTTCGCAAGTACTCTC 59.413 38.462 0.00 0.00 35.56 3.20
3465 6583 6.093404 TCATTAGTTTCGCAAGTACTCTCAG 58.907 40.000 0.00 0.00 35.56 3.35
3466 6584 2.678324 AGTTTCGCAAGTACTCTCAGC 58.322 47.619 0.00 0.00 39.48 4.26
3467 6585 2.035961 AGTTTCGCAAGTACTCTCAGCA 59.964 45.455 0.00 0.00 39.48 4.41
3552 6671 6.701145 TCTACTTTACTACTCTCAGCATGG 57.299 41.667 0.00 0.00 36.16 3.66
3554 6673 2.871182 TTACTACTCTCAGCATGGCG 57.129 50.000 0.00 0.00 36.16 5.69
3555 6674 1.763968 TACTACTCTCAGCATGGCGT 58.236 50.000 0.00 0.00 36.16 5.68
3711 6840 8.349983 AGTGTTGTAGTAATTGTGATGGTTTTC 58.650 33.333 0.00 0.00 0.00 2.29
3761 6890 5.220453 CCGATTGGCTTCATGCAAAATTTAC 60.220 40.000 0.00 0.00 45.15 2.01
3806 6939 7.938715 AGGGAGTAGTATTTAGTACATGTTCG 58.061 38.462 2.30 0.00 35.15 3.95
3859 6992 1.047801 AAAACATGCAACTCCACCCC 58.952 50.000 0.00 0.00 0.00 4.95
3861 6994 0.540365 AACATGCAACTCCACCCCTG 60.540 55.000 0.00 0.00 0.00 4.45
3867 7000 0.401738 CAACTCCACCCCTGTGACAT 59.598 55.000 0.00 0.00 45.76 3.06
3941 7074 2.289072 ACGGGAAGGAATATCATGCTCG 60.289 50.000 0.00 0.00 0.00 5.03
3982 7196 2.713976 GAGTTTGTTTGATTGCGTCACG 59.286 45.455 0.00 0.00 36.32 4.35
3985 7199 0.306228 TGTTTGATTGCGTCACGTGG 59.694 50.000 17.00 0.92 36.32 4.94
3993 7209 1.018148 TGCGTCACGTGGAAAACAAT 58.982 45.000 17.00 0.00 0.00 2.71
4158 7377 7.900782 CTTTGAATGAAAGGAGCATTGATTT 57.099 32.000 0.00 0.00 37.93 2.17
4159 7378 8.319143 CTTTGAATGAAAGGAGCATTGATTTT 57.681 30.769 0.00 0.00 37.93 1.82
4161 7380 9.775854 TTTGAATGAAAGGAGCATTGATTTTAA 57.224 25.926 0.00 0.00 36.19 1.52
4165 7384 9.558396 AATGAAAGGAGCATTGATTTTAAAACA 57.442 25.926 1.97 1.27 34.85 2.83
4166 7385 8.364129 TGAAAGGAGCATTGATTTTAAAACAC 57.636 30.769 1.97 1.69 0.00 3.32
4167 7386 7.168972 TGAAAGGAGCATTGATTTTAAAACACG 59.831 33.333 1.97 0.25 0.00 4.49
4168 7387 6.084326 AGGAGCATTGATTTTAAAACACGT 57.916 33.333 1.97 0.00 0.00 4.49
4169 7388 5.920273 AGGAGCATTGATTTTAAAACACGTG 59.080 36.000 15.48 15.48 0.00 4.49
4170 7389 5.388371 GGAGCATTGATTTTAAAACACGTGC 60.388 40.000 17.22 16.32 0.00 5.34
4171 7390 5.046529 AGCATTGATTTTAAAACACGTGCA 58.953 33.333 17.22 0.00 0.00 4.57
4172 7391 5.695816 AGCATTGATTTTAAAACACGTGCAT 59.304 32.000 17.22 1.22 0.00 3.96
4173 7392 6.865726 AGCATTGATTTTAAAACACGTGCATA 59.134 30.769 17.22 3.29 0.00 3.14
4174 7393 7.062138 AGCATTGATTTTAAAACACGTGCATAG 59.938 33.333 17.22 0.00 0.00 2.23
4175 7394 7.061673 GCATTGATTTTAAAACACGTGCATAGA 59.938 33.333 17.22 0.00 0.00 1.98
4176 7395 8.910666 CATTGATTTTAAAACACGTGCATAGAA 58.089 29.630 17.22 8.21 0.00 2.10
4177 7396 8.858003 TTGATTTTAAAACACGTGCATAGAAA 57.142 26.923 17.22 11.93 0.00 2.52
4178 7397 8.276060 TGATTTTAAAACACGTGCATAGAAAC 57.724 30.769 17.22 7.31 0.00 2.78
4179 7398 8.132362 TGATTTTAAAACACGTGCATAGAAACT 58.868 29.630 17.22 4.46 0.00 2.66
4180 7399 8.865590 ATTTTAAAACACGTGCATAGAAACTT 57.134 26.923 17.22 0.00 0.00 2.66
4181 7400 7.901874 TTTAAAACACGTGCATAGAAACTTC 57.098 32.000 17.22 0.00 0.00 3.01
4182 7401 5.493133 AAAACACGTGCATAGAAACTTCA 57.507 34.783 17.22 0.00 0.00 3.02
4226 7445 8.715191 AAACACATGCATAGAAACTTCAAAAA 57.285 26.923 0.00 0.00 0.00 1.94
4227 7446 7.935338 ACACATGCATAGAAACTTCAAAAAG 57.065 32.000 0.00 0.00 38.54 2.27
4235 7454 8.642020 GCATAGAAACTTCAAAAAGTGCATTAG 58.358 33.333 0.00 0.00 45.07 1.73
4378 7614 6.170506 TCAATACACGGCTCTTTTGTAGAAT 58.829 36.000 0.00 0.00 30.91 2.40
4387 7623 4.567159 GCTCTTTTGTAGAATAGGTGGACG 59.433 45.833 0.00 0.00 30.91 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.363795 TAGACACCCCTCTGGCGG 60.364 66.667 0.00 0.00 37.83 6.13
6 7 2.427245 CCTAGACACCCCTCTGGCG 61.427 68.421 0.00 0.00 37.83 5.69
7 8 0.910088 AACCTAGACACCCCTCTGGC 60.910 60.000 0.00 0.00 37.83 4.85
8 9 1.555533 GAAACCTAGACACCCCTCTGG 59.444 57.143 0.00 0.00 41.37 3.86
9 10 1.204941 CGAAACCTAGACACCCCTCTG 59.795 57.143 0.00 0.00 0.00 3.35
10 11 1.558233 CGAAACCTAGACACCCCTCT 58.442 55.000 0.00 0.00 0.00 3.69
11 12 0.535797 CCGAAACCTAGACACCCCTC 59.464 60.000 0.00 0.00 0.00 4.30
12 13 0.908180 CCCGAAACCTAGACACCCCT 60.908 60.000 0.00 0.00 0.00 4.79
13 14 1.600638 CCCGAAACCTAGACACCCC 59.399 63.158 0.00 0.00 0.00 4.95
14 15 0.906282 TCCCCGAAACCTAGACACCC 60.906 60.000 0.00 0.00 0.00 4.61
15 16 0.978907 TTCCCCGAAACCTAGACACC 59.021 55.000 0.00 0.00 0.00 4.16
16 17 1.622312 AGTTCCCCGAAACCTAGACAC 59.378 52.381 0.00 0.00 0.00 3.67
17 18 2.019807 AGTTCCCCGAAACCTAGACA 57.980 50.000 0.00 0.00 0.00 3.41
18 19 2.673326 CGAAGTTCCCCGAAACCTAGAC 60.673 54.545 0.00 0.00 0.00 2.59
19 20 1.547372 CGAAGTTCCCCGAAACCTAGA 59.453 52.381 0.00 0.00 0.00 2.43
20 21 1.274447 ACGAAGTTCCCCGAAACCTAG 59.726 52.381 0.00 0.00 37.78 3.02
21 22 1.341080 ACGAAGTTCCCCGAAACCTA 58.659 50.000 0.00 0.00 37.78 3.08
22 23 1.274447 CTACGAAGTTCCCCGAAACCT 59.726 52.381 0.00 0.00 37.78 3.50
23 24 1.273327 TCTACGAAGTTCCCCGAAACC 59.727 52.381 0.00 0.00 37.78 3.27
24 25 2.730550 TCTACGAAGTTCCCCGAAAC 57.269 50.000 0.00 0.00 37.78 2.78
25 26 5.278660 GCTATATCTACGAAGTTCCCCGAAA 60.279 44.000 0.00 0.00 37.78 3.46
26 27 4.217118 GCTATATCTACGAAGTTCCCCGAA 59.783 45.833 0.00 0.00 37.78 4.30
27 28 3.755378 GCTATATCTACGAAGTTCCCCGA 59.245 47.826 0.00 0.00 37.78 5.14
28 29 3.504906 TGCTATATCTACGAAGTTCCCCG 59.495 47.826 0.00 0.00 37.78 5.73
29 30 5.662674 ATGCTATATCTACGAAGTTCCCC 57.337 43.478 0.00 0.00 37.78 4.81
30 31 5.348997 GCAATGCTATATCTACGAAGTTCCC 59.651 44.000 0.00 0.00 37.78 3.97
31 32 6.159988 AGCAATGCTATATCTACGAAGTTCC 58.840 40.000 5.69 0.00 38.78 3.62
32 33 6.032985 CGAGCAATGCTATATCTACGAAGTTC 59.967 42.308 8.12 0.00 40.27 3.01
33 34 5.859114 CGAGCAATGCTATATCTACGAAGTT 59.141 40.000 8.12 0.00 40.27 2.66
34 35 5.394802 CGAGCAATGCTATATCTACGAAGT 58.605 41.667 8.12 0.00 42.35 3.01
35 36 4.264145 GCGAGCAATGCTATATCTACGAAG 59.736 45.833 8.12 0.00 39.88 3.79
36 37 4.082733 AGCGAGCAATGCTATATCTACGAA 60.083 41.667 8.12 0.00 41.87 3.85
37 38 3.440522 AGCGAGCAATGCTATATCTACGA 59.559 43.478 8.12 0.00 41.87 3.43
38 39 3.763902 AGCGAGCAATGCTATATCTACG 58.236 45.455 8.12 6.81 41.87 3.51
45 46 3.134458 GGTTAGAAGCGAGCAATGCTAT 58.866 45.455 8.12 0.00 43.14 2.97
57 58 0.623723 TGGGTGATGGGGTTAGAAGC 59.376 55.000 0.00 0.00 0.00 3.86
78 79 0.182775 CTATAGTTGTGGGTGGGGCC 59.817 60.000 0.00 0.00 0.00 5.80
91 92 2.247699 TGGGGTGTGTGAGCTATAGT 57.752 50.000 0.84 0.00 0.00 2.12
93 94 2.758130 TGATGGGGTGTGTGAGCTATA 58.242 47.619 0.00 0.00 0.00 1.31
95 96 1.278985 CTTGATGGGGTGTGTGAGCTA 59.721 52.381 0.00 0.00 0.00 3.32
97 98 0.962356 CCTTGATGGGGTGTGTGAGC 60.962 60.000 0.00 0.00 0.00 4.26
99 100 1.074775 GCCTTGATGGGGTGTGTGA 59.925 57.895 0.00 0.00 36.00 3.58
187 188 3.576078 AATCCACACAGTTGACCTCAA 57.424 42.857 0.00 0.00 0.00 3.02
243 338 6.424032 AGACCAGAAAAGTCAAAACTACCTT 58.576 36.000 0.00 0.00 36.68 3.50
264 359 9.431887 TCATAGTTAAAGTTGTATGGTGAAGAC 57.568 33.333 0.00 0.00 0.00 3.01
353 448 6.939730 TGAATATGTATAACCGGCAACATCAT 59.060 34.615 13.02 8.69 34.54 2.45
359 454 6.299922 TGGATTGAATATGTATAACCGGCAA 58.700 36.000 0.00 0.00 0.00 4.52
361 456 6.677920 GCATGGATTGAATATGTATAACCGGC 60.678 42.308 0.00 0.00 0.00 6.13
362 457 6.374053 TGCATGGATTGAATATGTATAACCGG 59.626 38.462 0.00 0.00 0.00 5.28
404 499 0.377554 TTGGTGCACAACGTTAACCG 59.622 50.000 20.43 0.00 44.03 4.44
405 500 2.563471 TTTGGTGCACAACGTTAACC 57.437 45.000 20.43 7.54 39.19 2.85
406 501 3.976306 GGTATTTGGTGCACAACGTTAAC 59.024 43.478 20.43 7.25 39.19 2.01
407 502 3.303857 CGGTATTTGGTGCACAACGTTAA 60.304 43.478 20.43 0.00 39.19 2.01
443 538 5.893824 CCCTCCTTCCTAAAATGTAAAGCAT 59.106 40.000 0.00 0.00 40.03 3.79
444 539 5.014755 TCCCTCCTTCCTAAAATGTAAAGCA 59.985 40.000 0.00 0.00 0.00 3.91
446 541 6.722328 ACTCCCTCCTTCCTAAAATGTAAAG 58.278 40.000 0.00 0.00 0.00 1.85
447 542 6.713731 ACTCCCTCCTTCCTAAAATGTAAA 57.286 37.500 0.00 0.00 0.00 2.01
453 548 3.766051 GTCGTACTCCCTCCTTCCTAAAA 59.234 47.826 0.00 0.00 0.00 1.52
457 552 0.702902 TGTCGTACTCCCTCCTTCCT 59.297 55.000 0.00 0.00 0.00 3.36
505 600 9.859427 TGCTTTAGTACTCTATAAACGCTTTTA 57.141 29.630 0.00 0.00 0.00 1.52
506 601 8.767478 TGCTTTAGTACTCTATAAACGCTTTT 57.233 30.769 0.00 0.00 0.00 2.27
507 602 8.033626 ACTGCTTTAGTACTCTATAAACGCTTT 58.966 33.333 0.00 0.00 38.04 3.51
508 603 7.488471 CACTGCTTTAGTACTCTATAAACGCTT 59.512 37.037 0.00 0.00 37.60 4.68
509 604 6.973474 CACTGCTTTAGTACTCTATAAACGCT 59.027 38.462 0.00 0.00 37.60 5.07
510 605 6.971184 TCACTGCTTTAGTACTCTATAAACGC 59.029 38.462 0.00 0.00 37.60 4.84
511 606 9.171701 GATCACTGCTTTAGTACTCTATAAACG 57.828 37.037 0.00 0.00 37.60 3.60
518 613 8.754080 ACATTTAGATCACTGCTTTAGTACTCT 58.246 33.333 0.00 0.00 37.60 3.24
519 614 8.934507 ACATTTAGATCACTGCTTTAGTACTC 57.065 34.615 0.00 0.00 37.60 2.59
520 615 9.726438 AAACATTTAGATCACTGCTTTAGTACT 57.274 29.630 0.00 0.00 37.60 2.73
559 654 9.656323 TGTTTGTGTATATTCTACTCCCTCTAT 57.344 33.333 0.00 0.00 0.00 1.98
560 655 9.483489 TTGTTTGTGTATATTCTACTCCCTCTA 57.517 33.333 0.00 0.00 0.00 2.43
561 656 7.973048 TGTTTGTGTATATTCTACTCCCTCT 57.027 36.000 0.00 0.00 0.00 3.69
562 657 9.444600 TTTTGTTTGTGTATATTCTACTCCCTC 57.555 33.333 0.00 0.00 0.00 4.30
563 658 9.227777 GTTTTGTTTGTGTATATTCTACTCCCT 57.772 33.333 0.00 0.00 0.00 4.20
564 659 9.227777 AGTTTTGTTTGTGTATATTCTACTCCC 57.772 33.333 0.00 0.00 0.00 4.30
570 665 8.995220 TCGCTAAGTTTTGTTTGTGTATATTCT 58.005 29.630 0.00 0.00 0.00 2.40
578 673 4.606961 ACCATCGCTAAGTTTTGTTTGTG 58.393 39.130 0.00 0.00 0.00 3.33
595 690 7.343057 TCATACTGTCATATCCATAGGACCATC 59.657 40.741 8.51 0.00 41.82 3.51
629 724 7.895429 TGAAAATGAATTATTCTTCTGTCCCCT 59.105 33.333 6.50 0.00 0.00 4.79
784 2930 0.809385 CAGCTGCTGTCTTTGGATGG 59.191 55.000 21.21 0.00 0.00 3.51
809 3038 5.336213 TAAGTTGACTTGACCTCGATGGTAC 60.336 44.000 6.64 1.16 42.26 3.34
812 3061 2.751166 AGTTGACTTGACCTCGATGG 57.249 50.000 0.00 0.00 42.93 3.51
817 3066 4.430908 CGGGTATAAGTTGACTTGACCTC 58.569 47.826 20.19 13.53 40.38 3.85
818 3067 3.369157 GCGGGTATAAGTTGACTTGACCT 60.369 47.826 20.19 3.88 40.38 3.85
845 3094 0.179468 CGAGCGGGAAAGGGGAAATA 59.821 55.000 0.00 0.00 0.00 1.40
869 3118 2.660552 GCCGTACGTGCAGTGTGT 60.661 61.111 19.50 0.00 0.00 3.72
908 3905 3.129502 CAGTCGGCATGCACCCAG 61.130 66.667 21.36 5.06 0.00 4.45
936 3933 2.359354 CCATGACCGGCGTTTGGA 60.359 61.111 6.01 0.00 30.69 3.53
948 3945 4.334118 AGCTGGTGCACGCCATGA 62.334 61.111 11.45 0.00 42.74 3.07
949 3946 3.807538 GAGCTGGTGCACGCCATG 61.808 66.667 11.45 0.00 42.74 3.66
950 3947 3.633609 ATGAGCTGGTGCACGCCAT 62.634 57.895 11.45 11.71 42.74 4.40
951 3948 3.848301 AATGAGCTGGTGCACGCCA 62.848 57.895 11.45 10.01 42.74 5.69
952 3949 2.533391 GAAATGAGCTGGTGCACGCC 62.533 60.000 11.45 0.00 42.74 5.68
953 3950 1.154150 GAAATGAGCTGGTGCACGC 60.154 57.895 11.45 9.82 42.74 5.34
954 3951 0.167470 CTGAAATGAGCTGGTGCACG 59.833 55.000 11.45 0.00 42.74 5.34
955 3952 1.068748 CACTGAAATGAGCTGGTGCAC 60.069 52.381 8.80 8.80 42.74 4.57
956 3953 1.241165 CACTGAAATGAGCTGGTGCA 58.759 50.000 0.00 0.00 42.74 4.57
1344 4399 3.322466 CTGGACCTCCCGGCTGTT 61.322 66.667 0.00 0.00 37.93 3.16
1505 4560 0.534412 ACATGAAGAGGAGCTCCACG 59.466 55.000 33.90 16.70 38.89 4.94
1559 4614 4.096003 AACCATGTCGCCTCGGGG 62.096 66.667 0.00 0.00 0.00 5.73
1569 4624 0.033208 CCCAGTATGCCCAACCATGT 60.033 55.000 0.00 0.00 31.97 3.21
1570 4625 0.258484 TCCCAGTATGCCCAACCATG 59.742 55.000 0.00 0.00 31.97 3.66
1581 4636 5.106157 CGATGAAAACTGCTTTTCCCAGTAT 60.106 40.000 8.27 0.00 43.28 2.12
1583 4638 3.004734 CGATGAAAACTGCTTTTCCCAGT 59.995 43.478 8.27 0.00 43.28 4.00
1585 4640 2.955660 ACGATGAAAACTGCTTTTCCCA 59.044 40.909 8.27 0.77 43.28 4.37
1665 4720 2.442188 CGACGGCGTAAGAGTTGCC 61.442 63.158 14.74 0.00 45.39 4.52
1754 4809 1.369091 CCACGTAAGGAGGCACATGC 61.369 60.000 0.00 0.00 46.39 4.06
1775 4830 1.691195 GCTCCTTGCTCTCCCCTACC 61.691 65.000 0.00 0.00 38.95 3.18
2000 5070 1.608717 CGTTGCTAGACCCTGCCTCT 61.609 60.000 0.00 0.00 0.00 3.69
2216 5286 3.536917 CCCACGCCGATAGCTCCA 61.537 66.667 0.00 0.00 40.39 3.86
2247 5317 1.134367 GAAGGCGATTACCCTTTTGCC 59.866 52.381 0.00 0.00 42.56 4.52
2355 5438 4.681978 GGCTTCGGTGAGCACGGT 62.682 66.667 7.84 0.00 44.49 4.83
2468 5551 2.506217 CTTTCTAGCGCCGCGTCA 60.506 61.111 15.34 1.33 0.00 4.35
2480 5563 2.546795 CCTGAGACGCAACACTCTTTCT 60.547 50.000 0.00 0.00 34.65 2.52
2485 5568 2.029844 GGCCTGAGACGCAACACTC 61.030 63.158 0.00 0.00 0.00 3.51
2543 5626 3.591254 GAAACGGCGAGGCTCCAGT 62.591 63.158 16.62 5.97 0.00 4.00
2618 5710 2.893398 GGCGAGACTTCCACCGAT 59.107 61.111 0.00 0.00 0.00 4.18
3038 6136 1.720301 GTACCTCTGCGTCGTCGAT 59.280 57.895 6.17 0.00 39.71 3.59
3050 6148 2.327244 CGTAGCCGCTCGTACCTC 59.673 66.667 0.00 0.00 0.00 3.85
3132 6230 3.697747 CGGGTACGCCTCCACCAA 61.698 66.667 4.09 0.00 36.48 3.67
3311 6409 3.640407 GCTGTCCCAGGCCTGTCA 61.640 66.667 30.63 22.98 31.21 3.58
3419 6537 9.790389 AATGAACTTACAACGATCTAGTCTAAG 57.210 33.333 0.00 0.00 0.00 2.18
3442 6560 5.220303 GCTGAGAGTACTTGCGAAACTAATG 60.220 44.000 0.00 0.00 0.00 1.90
3459 6577 9.778741 TTTATTACCCATACTTAATGCTGAGAG 57.221 33.333 0.00 0.00 33.92 3.20
3462 6580 9.860650 ACATTTATTACCCATACTTAATGCTGA 57.139 29.630 0.00 0.00 33.92 4.26
3552 6671 3.185594 GCCTTCCCACAAAAATTTTACGC 59.814 43.478 3.34 0.00 0.00 4.42
3554 6673 6.685527 TTTGCCTTCCCACAAAAATTTTAC 57.314 33.333 3.34 0.00 33.06 2.01
3555 6674 8.214364 ACTATTTGCCTTCCCACAAAAATTTTA 58.786 29.630 3.34 0.00 39.09 1.52
3711 6840 2.247358 AGTTTGGCCATGTTTGTAGGG 58.753 47.619 6.09 0.00 0.00 3.53
3761 6890 6.418101 TCCCTCCATCTCAAAAGAAGTTATG 58.582 40.000 0.00 0.00 34.49 1.90
3806 6939 6.872628 TGAAGATCATTATCCACTGCATTC 57.127 37.500 0.00 0.00 31.98 2.67
3859 6992 1.556911 AGAGGCCCTAACATGTCACAG 59.443 52.381 0.00 0.00 0.00 3.66
3861 6994 2.749621 CAAAGAGGCCCTAACATGTCAC 59.250 50.000 0.00 0.00 0.00 3.67
3867 7000 2.939640 GCGAATCAAAGAGGCCCTAACA 60.940 50.000 0.00 0.00 0.00 2.41
3956 7170 6.416455 GTGACGCAATCAAACAAACTCAAATA 59.584 34.615 0.00 0.00 39.72 1.40
3962 7176 2.096819 ACGTGACGCAATCAAACAAACT 59.903 40.909 4.25 0.00 39.72 2.66
4008 7224 5.121380 ACATTCTAGCATCCATTCCAACT 57.879 39.130 0.00 0.00 0.00 3.16
4142 7361 7.169140 ACGTGTTTTAAAATCAATGCTCCTTTC 59.831 33.333 3.52 0.00 0.00 2.62
4143 7362 6.983890 ACGTGTTTTAAAATCAATGCTCCTTT 59.016 30.769 3.52 0.00 0.00 3.11
4144 7363 6.420604 CACGTGTTTTAAAATCAATGCTCCTT 59.579 34.615 7.58 0.00 0.00 3.36
4146 7365 5.388371 GCACGTGTTTTAAAATCAATGCTCC 60.388 40.000 18.38 0.00 0.00 4.70
4147 7366 5.174761 TGCACGTGTTTTAAAATCAATGCTC 59.825 36.000 18.38 7.65 0.00 4.26
4150 7369 8.446489 TCTATGCACGTGTTTTAAAATCAATG 57.554 30.769 18.38 7.48 0.00 2.82
4153 7372 8.132362 AGTTTCTATGCACGTGTTTTAAAATCA 58.868 29.630 18.38 3.17 0.00 2.57
4154 7373 8.502161 AGTTTCTATGCACGTGTTTTAAAATC 57.498 30.769 18.38 4.89 0.00 2.17
4157 7376 7.473366 TGAAGTTTCTATGCACGTGTTTTAAA 58.527 30.769 18.38 8.95 0.00 1.52
4158 7377 7.017498 TGAAGTTTCTATGCACGTGTTTTAA 57.983 32.000 18.38 3.04 0.00 1.52
4159 7378 6.606234 TGAAGTTTCTATGCACGTGTTTTA 57.394 33.333 18.38 5.81 0.00 1.52
4161 7380 5.493133 TTGAAGTTTCTATGCACGTGTTT 57.507 34.783 18.38 7.51 0.00 2.83
4164 7383 4.911610 CCTTTTGAAGTTTCTATGCACGTG 59.088 41.667 12.28 12.28 0.00 4.49
4165 7384 4.819630 TCCTTTTGAAGTTTCTATGCACGT 59.180 37.500 0.00 0.00 0.00 4.49
4166 7385 5.356882 TCCTTTTGAAGTTTCTATGCACG 57.643 39.130 0.00 0.00 0.00 5.34
4167 7386 5.157067 GCTCCTTTTGAAGTTTCTATGCAC 58.843 41.667 0.00 0.00 0.00 4.57
4168 7387 4.826733 TGCTCCTTTTGAAGTTTCTATGCA 59.173 37.500 0.00 0.00 0.00 3.96
4169 7388 5.376854 TGCTCCTTTTGAAGTTTCTATGC 57.623 39.130 0.00 0.00 0.00 3.14
4173 7392 9.836864 AAAATTAATGCTCCTTTTGAAGTTTCT 57.163 25.926 0.00 0.00 0.00 2.52
4226 7445 9.816354 ACAAAACAGAAATAAAACTAATGCACT 57.184 25.926 0.00 0.00 0.00 4.40
4270 7491 6.996180 TTTCCCCCAAAATAATGTAACACA 57.004 33.333 0.00 0.00 0.00 3.72
4349 7585 6.512297 ACAAAAGAGCCGTGTATTGAAAAAT 58.488 32.000 0.00 0.00 0.00 1.82
4355 7591 5.856126 TTCTACAAAAGAGCCGTGTATTG 57.144 39.130 0.00 0.00 35.05 1.90
4363 7599 4.876679 GTCCACCTATTCTACAAAAGAGCC 59.123 45.833 0.00 0.00 35.05 4.70
4421 7659 5.682234 TCATCTCATGCTTCAGAAAGGTA 57.318 39.130 0.00 0.00 32.79 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.