Multiple sequence alignment - TraesCS2B01G101700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G101700 chr2B 100.000 8080 0 0 1 8080 62557130 62549051 0.000000e+00 14922.0
1 TraesCS2B01G101700 chr2D 91.394 7274 408 107 419 7563 36545267 36538083 0.000000e+00 9764.0
2 TraesCS2B01G101700 chr2D 81.055 417 33 24 7705 8080 36537941 36537530 2.850000e-74 291.0
3 TraesCS2B01G101700 chr2D 86.765 204 12 5 170 364 36545581 36545384 6.350000e-51 213.0
4 TraesCS2B01G101700 chr2D 87.143 70 8 1 7559 7627 36538061 36537992 2.420000e-10 78.7
5 TraesCS2B01G101700 chr2A 94.317 4733 188 35 1129 5828 40546806 40542122 0.000000e+00 7175.0
6 TraesCS2B01G101700 chr2A 90.330 1303 81 21 5858 7124 40541993 40540700 0.000000e+00 1666.0
7 TraesCS2B01G101700 chr2A 88.477 486 38 11 7608 8080 40540299 40539819 9.100000e-159 571.0
8 TraesCS2B01G101700 chr2A 84.180 512 37 16 645 1119 40547693 40547189 2.660000e-124 457.0
9 TraesCS2B01G101700 chr2A 81.757 148 12 8 7241 7385 40540621 40540486 8.570000e-20 110.0
10 TraesCS2B01G101700 chr2A 87.273 55 4 2 7539 7590 40540349 40540295 8.760000e-05 60.2
11 TraesCS2B01G101700 chr1B 86.040 1139 126 16 1095 2211 200412731 200413858 0.000000e+00 1192.0
12 TraesCS2B01G101700 chr1B 88.158 76 8 1 712 787 493310828 493310754 1.120000e-13 89.8
13 TraesCS2B01G101700 chr3D 84.958 359 29 15 7743 8080 560080267 560079913 2.790000e-89 340.0
14 TraesCS2B01G101700 chr3D 89.706 68 7 0 8013 8080 456102945 456102878 4.020000e-13 87.9
15 TraesCS2B01G101700 chr3A 89.706 68 7 0 8013 8080 598978447 598978380 4.020000e-13 87.9
16 TraesCS2B01G101700 chr3B 92.857 56 4 0 8025 8080 602588074 602588019 1.870000e-11 82.4
17 TraesCS2B01G101700 chr3B 89.091 55 4 2 541 594 826142588 826142535 5.230000e-07 67.6
18 TraesCS2B01G101700 chr3B 100.000 30 0 0 747 776 654435346 654435375 1.000000e-03 56.5
19 TraesCS2B01G101700 chr4D 90.164 61 6 0 733 793 5103666 5103606 6.720000e-11 80.5
20 TraesCS2B01G101700 chr5D 90.909 55 4 1 552 605 346691692 346691746 1.120000e-08 73.1
21 TraesCS2B01G101700 chr4A 82.927 82 11 3 696 774 468409619 468409538 4.050000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G101700 chr2B 62549051 62557130 8079 True 14922.000 14922 100.000000 1 8080 1 chr2B.!!$R1 8079
1 TraesCS2B01G101700 chr2D 36537530 36545581 8051 True 2586.675 9764 86.589250 170 8080 4 chr2D.!!$R1 7910
2 TraesCS2B01G101700 chr2A 40539819 40547693 7874 True 1673.200 7175 87.722333 645 8080 6 chr2A.!!$R1 7435
3 TraesCS2B01G101700 chr1B 200412731 200413858 1127 False 1192.000 1192 86.040000 1095 2211 1 chr1B.!!$F1 1116

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 333 0.032952 GTGTTGTACCTCCACGAGCA 59.967 55.000 0.00 0.00 0.00 4.26 F
408 462 0.179150 TGCGCAAACAACACTGAACC 60.179 50.000 8.16 0.00 0.00 3.62 F
409 463 0.179150 GCGCAAACAACACTGAACCA 60.179 50.000 0.30 0.00 0.00 3.67 F
1430 1941 0.388006 CATGTGATCGGCGCGGTATA 60.388 55.000 15.06 0.00 0.00 1.47 F
1513 2027 0.450583 TCAGTAGTTCCGTGCGCTAG 59.549 55.000 9.73 1.71 0.00 3.42 F
2579 3110 0.475044 ACCCGGTTCCTGTTAAAGCA 59.525 50.000 0.00 0.00 0.00 3.91 F
2853 3384 0.800683 CAGTGCATGCCATCTTTGCG 60.801 55.000 16.68 0.00 39.23 4.85 F
3373 3907 1.005687 TGGGGCATGTTGATCATCACA 59.994 47.619 8.62 5.66 34.09 3.58 F
4248 4786 1.267574 ATCCATGTGGCCAGTCTCGT 61.268 55.000 5.11 0.00 34.44 4.18 F
5774 6328 0.606401 ACTCCAAGGGCATGACAACG 60.606 55.000 0.00 0.00 0.00 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1381 1892 0.110104 GGGATGCAGGAATCAGGAGG 59.890 60.000 0.00 0.00 0.00 4.30 R
1685 2211 0.527113 CGGATGCATTTGTGGAGCAA 59.473 50.000 0.00 0.00 42.15 3.91 R
1940 2467 1.127567 TAGTGGGCTTGCCTGAGTGT 61.128 55.000 11.71 0.00 0.00 3.55 R
2773 3304 1.133025 GAGACAATCAACATTGGGCCG 59.867 52.381 0.00 0.00 43.47 6.13 R
3407 3941 1.350684 TGGTAGCATCAGCAACAGGAA 59.649 47.619 0.00 0.00 45.49 3.36 R
3583 4117 0.886490 CACAGGCCAGTCTGGAACAC 60.886 60.000 23.77 8.92 40.96 3.32 R
4468 5006 1.327764 GTTAATTCAGCGAGGAAGCGG 59.672 52.381 0.00 0.00 43.00 5.52 R
4912 5451 3.134574 TGTTGCAGTCCGGTTTTAGAT 57.865 42.857 0.00 0.00 0.00 1.98 R
5892 6545 0.254178 ATCGCCAGCCTGAAGACAAT 59.746 50.000 0.00 0.00 0.00 2.71 R
7732 8537 0.037303 CATGGACCACTGCTCTGGTT 59.963 55.000 0.00 0.00 45.15 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.984422 TCTCTGATTTTATTTCTCACTTGCA 57.016 32.000 0.00 0.00 0.00 4.08
27 28 8.571461 TCTCTGATTTTATTTCTCACTTGCAT 57.429 30.769 0.00 0.00 0.00 3.96
28 29 8.456471 TCTCTGATTTTATTTCTCACTTGCATG 58.544 33.333 0.00 0.00 0.00 4.06
29 30 8.339344 TCTGATTTTATTTCTCACTTGCATGA 57.661 30.769 6.60 0.00 0.00 3.07
30 31 8.239314 TCTGATTTTATTTCTCACTTGCATGAC 58.761 33.333 6.60 0.00 0.00 3.06
31 32 8.114331 TGATTTTATTTCTCACTTGCATGACT 57.886 30.769 6.60 0.00 0.00 3.41
32 33 8.579006 TGATTTTATTTCTCACTTGCATGACTT 58.421 29.630 6.60 0.00 0.00 3.01
36 37 9.453572 TTTATTTCTCACTTGCATGACTTATCT 57.546 29.630 6.60 0.00 0.00 1.98
39 40 9.624373 ATTTCTCACTTGCATGACTTATCTATT 57.376 29.630 6.60 0.00 0.00 1.73
40 41 8.429493 TTCTCACTTGCATGACTTATCTATTG 57.571 34.615 6.60 0.00 0.00 1.90
41 42 6.481313 TCTCACTTGCATGACTTATCTATTGC 59.519 38.462 6.60 0.00 0.00 3.56
42 43 6.351711 TCACTTGCATGACTTATCTATTGCT 58.648 36.000 6.60 0.00 31.37 3.91
43 44 6.825213 TCACTTGCATGACTTATCTATTGCTT 59.175 34.615 6.60 0.00 31.37 3.91
44 45 6.910972 CACTTGCATGACTTATCTATTGCTTG 59.089 38.462 6.60 0.00 31.37 4.01
45 46 6.825213 ACTTGCATGACTTATCTATTGCTTGA 59.175 34.615 6.60 0.00 31.37 3.02
46 47 6.856135 TGCATGACTTATCTATTGCTTGAG 57.144 37.500 0.00 0.00 31.37 3.02
47 48 6.585416 TGCATGACTTATCTATTGCTTGAGA 58.415 36.000 0.00 0.00 31.37 3.27
48 49 7.049754 TGCATGACTTATCTATTGCTTGAGAA 58.950 34.615 0.00 0.00 31.37 2.87
49 50 7.553760 TGCATGACTTATCTATTGCTTGAGAAA 59.446 33.333 0.00 0.00 31.37 2.52
50 51 8.566260 GCATGACTTATCTATTGCTTGAGAAAT 58.434 33.333 0.00 0.00 0.00 2.17
58 59 8.723942 ATCTATTGCTTGAGAAATAAAGTCGT 57.276 30.769 0.00 0.00 0.00 4.34
59 60 8.547967 TCTATTGCTTGAGAAATAAAGTCGTT 57.452 30.769 0.00 0.00 0.00 3.85
60 61 8.999431 TCTATTGCTTGAGAAATAAAGTCGTTT 58.001 29.630 0.00 0.00 0.00 3.60
61 62 9.612620 CTATTGCTTGAGAAATAAAGTCGTTTT 57.387 29.630 0.00 0.00 0.00 2.43
62 63 8.871686 ATTGCTTGAGAAATAAAGTCGTTTTT 57.128 26.923 0.00 0.00 0.00 1.94
63 64 7.908193 TGCTTGAGAAATAAAGTCGTTTTTC 57.092 32.000 0.00 0.00 0.00 2.29
64 65 6.915843 TGCTTGAGAAATAAAGTCGTTTTTCC 59.084 34.615 0.00 0.00 0.00 3.13
65 66 7.139392 GCTTGAGAAATAAAGTCGTTTTTCCT 58.861 34.615 0.00 0.00 0.00 3.36
66 67 7.113544 GCTTGAGAAATAAAGTCGTTTTTCCTG 59.886 37.037 0.00 0.00 0.00 3.86
67 68 7.562454 TGAGAAATAAAGTCGTTTTTCCTGT 57.438 32.000 0.00 0.00 0.00 4.00
68 69 8.665643 TGAGAAATAAAGTCGTTTTTCCTGTA 57.334 30.769 0.00 0.00 0.00 2.74
69 70 9.111613 TGAGAAATAAAGTCGTTTTTCCTGTAA 57.888 29.630 0.00 0.00 0.00 2.41
70 71 9.940166 GAGAAATAAAGTCGTTTTTCCTGTAAA 57.060 29.630 0.00 0.00 0.00 2.01
96 97 6.183309 AGAACTTGACACTTGTTCTTCAAC 57.817 37.500 10.23 0.00 45.32 3.18
97 98 4.600012 ACTTGACACTTGTTCTTCAACG 57.400 40.909 0.00 0.00 34.95 4.10
98 99 4.250464 ACTTGACACTTGTTCTTCAACGA 58.750 39.130 0.00 0.00 34.95 3.85
99 100 4.693566 ACTTGACACTTGTTCTTCAACGAA 59.306 37.500 0.00 0.00 34.95 3.85
100 101 4.593597 TGACACTTGTTCTTCAACGAAC 57.406 40.909 0.00 0.00 42.73 3.95
101 102 3.061563 TGACACTTGTTCTTCAACGAACG 59.938 43.478 0.00 0.00 44.76 3.95
102 103 2.350498 ACACTTGTTCTTCAACGAACGG 59.650 45.455 0.00 0.00 44.76 4.44
103 104 1.937899 ACTTGTTCTTCAACGAACGGG 59.062 47.619 0.00 0.00 44.76 5.28
104 105 1.263217 CTTGTTCTTCAACGAACGGGG 59.737 52.381 0.00 0.00 44.76 5.73
105 106 1.161563 TGTTCTTCAACGAACGGGGC 61.162 55.000 0.00 0.00 44.76 5.80
106 107 1.146485 TTCTTCAACGAACGGGGCA 59.854 52.632 0.00 0.00 0.00 5.36
107 108 0.882927 TTCTTCAACGAACGGGGCAG 60.883 55.000 0.00 0.00 0.00 4.85
108 109 1.301401 CTTCAACGAACGGGGCAGA 60.301 57.895 0.00 0.00 0.00 4.26
109 110 0.882927 CTTCAACGAACGGGGCAGAA 60.883 55.000 0.00 0.00 0.00 3.02
110 111 0.464013 TTCAACGAACGGGGCAGAAA 60.464 50.000 0.00 0.00 0.00 2.52
111 112 0.464013 TCAACGAACGGGGCAGAAAA 60.464 50.000 0.00 0.00 0.00 2.29
112 113 0.596082 CAACGAACGGGGCAGAAAAT 59.404 50.000 0.00 0.00 0.00 1.82
113 114 1.807742 CAACGAACGGGGCAGAAAATA 59.192 47.619 0.00 0.00 0.00 1.40
114 115 2.188062 ACGAACGGGGCAGAAAATAA 57.812 45.000 0.00 0.00 0.00 1.40
115 116 2.506444 ACGAACGGGGCAGAAAATAAA 58.494 42.857 0.00 0.00 0.00 1.40
116 117 2.227149 ACGAACGGGGCAGAAAATAAAC 59.773 45.455 0.00 0.00 0.00 2.01
117 118 2.226912 CGAACGGGGCAGAAAATAAACA 59.773 45.455 0.00 0.00 0.00 2.83
118 119 3.304794 CGAACGGGGCAGAAAATAAACAA 60.305 43.478 0.00 0.00 0.00 2.83
119 120 4.617298 CGAACGGGGCAGAAAATAAACAAT 60.617 41.667 0.00 0.00 0.00 2.71
120 121 4.882842 ACGGGGCAGAAAATAAACAATT 57.117 36.364 0.00 0.00 0.00 2.32
121 122 4.565022 ACGGGGCAGAAAATAAACAATTG 58.435 39.130 3.24 3.24 0.00 2.32
122 123 4.282195 ACGGGGCAGAAAATAAACAATTGA 59.718 37.500 13.59 0.00 0.00 2.57
123 124 5.046663 ACGGGGCAGAAAATAAACAATTGAT 60.047 36.000 13.59 0.00 0.00 2.57
124 125 5.291614 CGGGGCAGAAAATAAACAATTGATG 59.708 40.000 13.59 0.00 0.00 3.07
125 126 6.405538 GGGGCAGAAAATAAACAATTGATGA 58.594 36.000 13.59 0.00 0.00 2.92
126 127 6.313658 GGGGCAGAAAATAAACAATTGATGAC 59.686 38.462 13.59 0.00 0.00 3.06
127 128 7.099120 GGGCAGAAAATAAACAATTGATGACT 58.901 34.615 13.59 0.00 0.00 3.41
128 129 7.603784 GGGCAGAAAATAAACAATTGATGACTT 59.396 33.333 13.59 0.00 0.00 3.01
129 130 8.650714 GGCAGAAAATAAACAATTGATGACTTC 58.349 33.333 13.59 7.49 0.00 3.01
130 131 8.650714 GCAGAAAATAAACAATTGATGACTTCC 58.349 33.333 13.59 0.00 0.00 3.46
131 132 9.695526 CAGAAAATAAACAATTGATGACTTCCA 57.304 29.630 13.59 0.00 0.00 3.53
132 133 9.918630 AGAAAATAAACAATTGATGACTTCCAG 57.081 29.630 13.59 0.00 0.00 3.86
133 134 9.696917 GAAAATAAACAATTGATGACTTCCAGT 57.303 29.630 13.59 0.00 0.00 4.00
145 146 9.739276 TTGATGACTTCCAGTATTTATTGAAGT 57.261 29.630 3.09 3.09 34.60 3.01
146 147 9.166173 TGATGACTTCCAGTATTTATTGAAGTG 57.834 33.333 7.83 0.00 32.44 3.16
147 148 7.921786 TGACTTCCAGTATTTATTGAAGTGG 57.078 36.000 7.83 0.00 32.44 4.00
148 149 7.458397 TGACTTCCAGTATTTATTGAAGTGGT 58.542 34.615 7.83 0.00 32.44 4.16
149 150 7.606456 TGACTTCCAGTATTTATTGAAGTGGTC 59.394 37.037 7.83 0.00 32.44 4.02
150 151 6.594159 ACTTCCAGTATTTATTGAAGTGGTCG 59.406 38.462 0.00 0.00 31.30 4.79
151 152 6.045072 TCCAGTATTTATTGAAGTGGTCGT 57.955 37.500 0.00 0.00 0.00 4.34
152 153 7.172868 TCCAGTATTTATTGAAGTGGTCGTA 57.827 36.000 0.00 0.00 0.00 3.43
153 154 7.037438 TCCAGTATTTATTGAAGTGGTCGTAC 58.963 38.462 0.00 0.00 0.00 3.67
154 155 7.039882 CCAGTATTTATTGAAGTGGTCGTACT 58.960 38.462 0.00 0.00 0.00 2.73
155 156 7.222224 CCAGTATTTATTGAAGTGGTCGTACTC 59.778 40.741 0.00 0.00 0.00 2.59
156 157 7.758076 CAGTATTTATTGAAGTGGTCGTACTCA 59.242 37.037 0.00 0.00 0.00 3.41
157 158 8.308931 AGTATTTATTGAAGTGGTCGTACTCAA 58.691 33.333 0.00 0.00 0.00 3.02
158 159 7.596749 ATTTATTGAAGTGGTCGTACTCAAG 57.403 36.000 0.00 0.00 0.00 3.02
159 160 4.866508 ATTGAAGTGGTCGTACTCAAGA 57.133 40.909 0.00 0.00 0.00 3.02
160 161 4.866508 TTGAAGTGGTCGTACTCAAGAT 57.133 40.909 0.00 0.00 0.00 2.40
161 162 4.174411 TGAAGTGGTCGTACTCAAGATG 57.826 45.455 0.00 0.00 0.00 2.90
162 163 2.656560 AGTGGTCGTACTCAAGATGC 57.343 50.000 0.00 0.00 0.00 3.91
163 164 1.893137 AGTGGTCGTACTCAAGATGCA 59.107 47.619 0.00 0.00 0.00 3.96
164 165 1.993370 GTGGTCGTACTCAAGATGCAC 59.007 52.381 0.00 0.00 0.00 4.57
165 166 1.616374 TGGTCGTACTCAAGATGCACA 59.384 47.619 0.00 0.00 0.00 4.57
166 167 1.993370 GGTCGTACTCAAGATGCACAC 59.007 52.381 0.00 0.00 0.00 3.82
167 168 1.649171 GTCGTACTCAAGATGCACACG 59.351 52.381 0.00 0.00 0.00 4.49
168 169 1.268625 TCGTACTCAAGATGCACACGT 59.731 47.619 0.00 0.00 0.00 4.49
176 177 0.320771 AGATGCACACGTTGTCTCCC 60.321 55.000 0.00 0.00 0.00 4.30
182 183 1.129058 ACACGTTGTCTCCCTTCCTT 58.871 50.000 0.00 0.00 0.00 3.36
188 189 3.494398 CGTTGTCTCCCTTCCTTTCTGAA 60.494 47.826 0.00 0.00 0.00 3.02
189 190 4.461198 GTTGTCTCCCTTCCTTTCTGAAA 58.539 43.478 2.44 2.44 0.00 2.69
190 191 5.073428 GTTGTCTCCCTTCCTTTCTGAAAT 58.927 41.667 2.88 0.00 0.00 2.17
191 192 5.324832 TGTCTCCCTTCCTTTCTGAAATT 57.675 39.130 2.88 0.00 0.00 1.82
223 224 0.244994 GCTCACATGTGTCGTCCTCT 59.755 55.000 24.63 0.00 0.00 3.69
244 246 0.788391 GTCACGTTTCATCGTCCACC 59.212 55.000 0.00 0.00 42.27 4.61
267 277 4.364415 TGCTTTGTTTGTGTACCACTTC 57.636 40.909 0.00 0.00 35.11 3.01
280 290 0.665369 CCACTTCCGACACACGTACC 60.665 60.000 0.00 0.00 40.78 3.34
288 298 1.843992 GACACACGTACCGAGTTTGT 58.156 50.000 0.00 0.00 35.50 2.83
306 316 5.297776 AGTTTGTTGGACTGAAATCTGAGTG 59.702 40.000 0.00 0.00 0.00 3.51
307 317 4.422073 TGTTGGACTGAAATCTGAGTGT 57.578 40.909 0.00 0.00 0.00 3.55
323 333 0.032952 GTGTTGTACCTCCACGAGCA 59.967 55.000 0.00 0.00 0.00 4.26
346 356 4.824479 AAGCAAAGTTTCCCCCAATATG 57.176 40.909 0.00 0.00 0.00 1.78
351 361 4.692523 AAGTTTCCCCCAATATGTTCCT 57.307 40.909 0.00 0.00 0.00 3.36
352 362 4.251103 AGTTTCCCCCAATATGTTCCTC 57.749 45.455 0.00 0.00 0.00 3.71
355 365 4.965283 TTCCCCCAATATGTTCCTCTTT 57.035 40.909 0.00 0.00 0.00 2.52
408 462 0.179150 TGCGCAAACAACACTGAACC 60.179 50.000 8.16 0.00 0.00 3.62
409 463 0.179150 GCGCAAACAACACTGAACCA 60.179 50.000 0.30 0.00 0.00 3.67
410 464 1.734047 GCGCAAACAACACTGAACCAA 60.734 47.619 0.30 0.00 0.00 3.67
411 465 2.600731 CGCAAACAACACTGAACCAAA 58.399 42.857 0.00 0.00 0.00 3.28
412 466 2.344142 CGCAAACAACACTGAACCAAAC 59.656 45.455 0.00 0.00 0.00 2.93
414 468 3.862642 GCAAACAACACTGAACCAAACCA 60.863 43.478 0.00 0.00 0.00 3.67
415 469 4.310769 CAAACAACACTGAACCAAACCAA 58.689 39.130 0.00 0.00 0.00 3.67
416 470 3.866883 ACAACACTGAACCAAACCAAG 57.133 42.857 0.00 0.00 0.00 3.61
417 471 2.495669 ACAACACTGAACCAAACCAAGG 59.504 45.455 0.00 0.00 0.00 3.61
454 526 3.676646 ACACGTTTCTATTTGGCGAGTAC 59.323 43.478 0.00 0.00 0.00 2.73
458 530 6.035220 CACGTTTCTATTTGGCGAGTACAATA 59.965 38.462 0.00 0.00 0.00 1.90
483 566 7.136822 TGGTACATCTGCTACAAATATTCCT 57.863 36.000 0.00 0.00 0.00 3.36
484 567 6.992123 TGGTACATCTGCTACAAATATTCCTG 59.008 38.462 0.00 0.00 0.00 3.86
485 568 6.428159 GGTACATCTGCTACAAATATTCCTGG 59.572 42.308 0.00 0.00 0.00 4.45
486 569 6.252599 ACATCTGCTACAAATATTCCTGGA 57.747 37.500 0.00 0.00 0.00 3.86
504 587 1.221414 GACGCATGGTTAGAGCATCC 58.779 55.000 0.00 0.00 33.46 3.51
506 589 1.141657 ACGCATGGTTAGAGCATCCAT 59.858 47.619 0.00 0.00 41.88 3.41
507 590 2.368548 ACGCATGGTTAGAGCATCCATA 59.631 45.455 0.00 0.00 39.57 2.74
508 591 3.181455 ACGCATGGTTAGAGCATCCATAA 60.181 43.478 0.00 0.00 39.57 1.90
516 599 1.139058 AGAGCATCCATAACCGGTCAC 59.861 52.381 8.04 0.00 33.66 3.67
521 604 0.899720 TCCATAACCGGTCACTGTCC 59.100 55.000 8.04 0.00 0.00 4.02
542 625 3.456039 GACGCGTTCGGTCACGTC 61.456 66.667 15.53 0.00 46.64 4.34
543 626 3.957535 ACGCGTTCGGTCACGTCT 61.958 61.111 5.58 0.00 42.43 4.18
546 629 2.354188 CGTTCGGTCACGTCTGCA 60.354 61.111 0.00 0.00 41.85 4.41
549 632 3.858868 TTCGGTCACGTCTGCAGGC 62.859 63.158 15.13 12.04 41.85 4.85
558 641 2.032528 TCTGCAGGCGTTTGAGGG 59.967 61.111 15.13 0.00 0.00 4.30
562 645 2.359975 CAGGCGTTTGAGGGGTCC 60.360 66.667 0.00 0.00 0.00 4.46
568 651 0.802494 CGTTTGAGGGGTCCGATTTG 59.198 55.000 0.00 0.00 0.00 2.32
570 653 0.404040 TTTGAGGGGTCCGATTTGCT 59.596 50.000 0.00 0.00 0.00 3.91
581 664 4.365723 GTCCGATTTGCTAAGTCCGATTA 58.634 43.478 0.00 0.00 0.00 1.75
584 667 6.308282 GTCCGATTTGCTAAGTCCGATTATAG 59.692 42.308 0.00 0.00 0.00 1.31
630 714 0.895530 AGTTTCTGTGCGCTAGGCTA 59.104 50.000 9.73 0.00 44.05 3.93
638 722 4.340097 TCTGTGCGCTAGGCTAGTATAAAA 59.660 41.667 21.92 4.47 44.05 1.52
675 759 3.446799 TGCAAATGTGAAGCAAAGTGAC 58.553 40.909 0.00 0.00 34.97 3.67
681 765 1.228154 GAAGCAAAGTGACGGGGGT 60.228 57.895 0.00 0.00 0.00 4.95
688 772 3.418047 CAAAGTGACGGGGGTAGATTTT 58.582 45.455 0.00 0.00 0.00 1.82
691 775 5.446260 AAGTGACGGGGGTAGATTTTAAT 57.554 39.130 0.00 0.00 0.00 1.40
736 822 4.510340 GCGTTAGATACAAATCGGATGGTT 59.490 41.667 0.00 0.00 37.19 3.67
747 833 3.173668 TCGGATGGTTAGAAATGACGG 57.826 47.619 0.00 0.00 0.00 4.79
748 834 2.761767 TCGGATGGTTAGAAATGACGGA 59.238 45.455 0.00 0.00 0.00 4.69
749 835 3.386726 TCGGATGGTTAGAAATGACGGAT 59.613 43.478 0.00 0.00 0.00 4.18
753 842 4.545208 TGGTTAGAAATGACGGATGACA 57.455 40.909 0.00 0.00 0.00 3.58
776 865 7.732996 ACAGATACATCATCATCATCAACTCA 58.267 34.615 0.00 0.00 35.96 3.41
780 869 5.985911 ACATCATCATCATCAACTCAGTCA 58.014 37.500 0.00 0.00 0.00 3.41
787 876 8.671028 CATCATCATCAACTCAGTCATTTGTAA 58.329 33.333 0.00 0.00 0.00 2.41
791 880 7.445121 TCATCAACTCAGTCATTTGTAAGAGT 58.555 34.615 0.00 0.00 37.90 3.24
794 883 6.868864 TCAACTCAGTCATTTGTAAGAGTAGC 59.131 38.462 0.00 0.00 35.47 3.58
795 884 5.725362 ACTCAGTCATTTGTAAGAGTAGCC 58.275 41.667 0.00 0.00 34.83 3.93
798 887 6.166279 TCAGTCATTTGTAAGAGTAGCCAAG 58.834 40.000 0.00 0.00 0.00 3.61
800 889 6.650807 CAGTCATTTGTAAGAGTAGCCAAGAA 59.349 38.462 0.00 0.00 0.00 2.52
801 890 7.173218 CAGTCATTTGTAAGAGTAGCCAAGAAA 59.827 37.037 0.00 0.00 0.00 2.52
803 892 8.349983 GTCATTTGTAAGAGTAGCCAAGAAAAA 58.650 33.333 0.00 0.00 0.00 1.94
804 893 9.077885 TCATTTGTAAGAGTAGCCAAGAAAAAT 57.922 29.630 0.00 0.00 0.00 1.82
969 1077 3.108288 GCGCCCTTCCTTCCCCTAG 62.108 68.421 0.00 0.00 0.00 3.02
1381 1892 4.509737 GAGAGGGTACGCACCGCC 62.510 72.222 12.95 0.00 46.86 6.13
1430 1941 0.388006 CATGTGATCGGCGCGGTATA 60.388 55.000 15.06 0.00 0.00 1.47
1441 1952 2.594962 GCGGTATATGCGCGCTTGT 61.595 57.895 33.29 25.72 0.00 3.16
1483 1995 3.329889 ACAAGCCTGATCCCGCCA 61.330 61.111 0.00 0.00 0.00 5.69
1504 2016 4.084013 CCACGTGATTTGTTCAGTAGTTCC 60.084 45.833 19.30 0.00 34.17 3.62
1513 2027 0.450583 TCAGTAGTTCCGTGCGCTAG 59.549 55.000 9.73 1.71 0.00 3.42
1532 2046 1.639298 GGATGCAGTTCGTCAGTGGC 61.639 60.000 0.00 0.00 32.27 5.01
1590 2106 2.888414 CGGCCGGGTTAATTTATCCATT 59.112 45.455 20.10 0.00 0.00 3.16
1623 2139 3.700038 CCAGTACTCACCACTTACCTAGG 59.300 52.174 7.41 7.41 0.00 3.02
1685 2211 1.952296 CAGCTCTGGCAAAACTTGAGT 59.048 47.619 0.00 0.00 41.70 3.41
1695 2221 3.675775 GCAAAACTTGAGTTGCTCCACAA 60.676 43.478 0.00 0.00 45.34 3.33
1719 2246 2.487265 GCATCCGGGAAATGTATCCAGT 60.487 50.000 0.00 0.00 41.55 4.00
1857 2384 2.368439 TGCAGTTTTGAGCACTGAACT 58.632 42.857 5.38 1.83 43.90 3.01
1862 2389 3.118261 AGTTTTGAGCACTGAACTCCAGA 60.118 43.478 0.00 0.00 45.78 3.86
1881 2408 6.039616 TCCAGAAAACATGTTTTGTAACAGC 58.960 36.000 34.88 20.69 46.71 4.40
1895 2422 7.731792 GTTTTGTAACAGCTGTAATCTGCAAGA 60.732 37.037 22.01 12.44 39.96 3.02
2030 2561 2.108952 ACCAAAATCCTCTGTTCCTGCT 59.891 45.455 0.00 0.00 0.00 4.24
2057 2588 3.484886 GCACATTTGAGAGCATCGAAGAC 60.485 47.826 0.00 0.00 42.51 3.01
2078 2609 3.380004 ACTCAGACGAGGATGTTGATCTC 59.620 47.826 0.00 0.00 44.17 2.75
2139 2670 5.105756 GGCACAAATGGAGCTATTGTAAGTT 60.106 40.000 6.41 0.00 35.63 2.66
2152 2683 9.347240 AGCTATTGTAAGTTCAAGATGCATATT 57.653 29.630 0.00 0.00 0.00 1.28
2166 2697 4.100707 TGCATATTCTTTGACAAGCAGC 57.899 40.909 0.00 0.00 0.00 5.25
2186 2717 2.046313 CGCTTGCTGCTTACTTTTGTG 58.954 47.619 0.00 0.00 40.11 3.33
2204 2735 9.883142 ACTTTTGTGGATAATTTGTTTTCTGAA 57.117 25.926 0.00 0.00 0.00 3.02
2270 2801 7.994425 TGTTATTAAGTGGAGCTTTGAATGA 57.006 32.000 0.00 0.00 38.57 2.57
2406 2937 6.954944 TGTAGCTCACACACTAAATTGTTTC 58.045 36.000 0.00 0.00 30.04 2.78
2410 2941 7.547227 AGCTCACACACTAAATTGTTTCTTTT 58.453 30.769 0.00 0.00 0.00 2.27
2478 3009 5.395682 TTTCCTCAAAATTCATGCTCAGG 57.604 39.130 0.00 0.00 0.00 3.86
2539 3070 9.291664 GTCTGTACTTGATAGACTAACATTGTC 57.708 37.037 3.65 0.00 41.76 3.18
2541 3072 9.295214 CTGTACTTGATAGACTAACATTGTCTG 57.705 37.037 6.65 0.00 43.66 3.51
2579 3110 0.475044 ACCCGGTTCCTGTTAAAGCA 59.525 50.000 0.00 0.00 0.00 3.91
2746 3277 3.891366 ACAGCTGTTGGTATGCTTTTTCT 59.109 39.130 15.25 0.00 34.51 2.52
2776 3307 8.856490 ATATCTGTTTGTTCAATAATTTCGGC 57.144 30.769 0.00 0.00 0.00 5.54
2853 3384 0.800683 CAGTGCATGCCATCTTTGCG 60.801 55.000 16.68 0.00 39.23 4.85
2865 3396 4.046462 CCATCTTTGCGCATTCCTTTATG 58.954 43.478 12.75 8.50 0.00 1.90
2895 3426 3.240069 GCATCAGCTTGATTGTGTTGAC 58.760 45.455 0.00 0.00 34.28 3.18
2898 3429 3.141398 TCAGCTTGATTGTGTTGACCTC 58.859 45.455 0.00 0.00 0.00 3.85
3110 3644 7.477945 AATAATAACTGATCCTAGTACCCCG 57.522 40.000 0.00 0.00 0.00 5.73
3220 3754 7.095017 GGCTACACATATATCTGCTTTCCTTTC 60.095 40.741 0.00 0.00 0.00 2.62
3229 3763 5.010708 TCTGCTTTCCTTTCCCCTAAAAT 57.989 39.130 0.00 0.00 0.00 1.82
3309 3843 3.244911 ACCCCAGTAAAGATTGTGAGTGG 60.245 47.826 0.00 0.00 32.97 4.00
3373 3907 1.005687 TGGGGCATGTTGATCATCACA 59.994 47.619 8.62 5.66 34.09 3.58
3407 3941 5.065914 TGATGCAGCTAAAGAAAGACTGTT 58.934 37.500 2.53 0.00 0.00 3.16
3532 4066 9.732130 ATCTTCTAGAGCAAGTAATTCTTTTGT 57.268 29.630 0.00 0.00 33.63 2.83
3535 4069 8.773404 TCTAGAGCAAGTAATTCTTTTGTACC 57.227 34.615 0.00 0.00 33.63 3.34
3545 4079 8.847196 AGTAATTCTTTTGTACCTTGTTCCTTC 58.153 33.333 0.00 0.00 0.00 3.46
3552 4086 4.798882 TGTACCTTGTTCCTTCCAAACAT 58.201 39.130 0.00 0.00 36.57 2.71
3583 4117 8.517056 TCTATTGTTGCCTGCATATATTGAATG 58.483 33.333 0.00 0.00 0.00 2.67
3647 4181 4.881920 TCATTGAGAACTTGATGACGTCA 58.118 39.130 22.48 22.48 34.25 4.35
3653 4187 2.168326 ACTTGATGACGTCACATGCA 57.832 45.000 22.71 13.76 36.32 3.96
3671 4205 6.020121 CACATGCACAAGCTATTTTATTCTGC 60.020 38.462 0.00 0.00 42.74 4.26
3680 4214 6.489675 AGCTATTTTATTCTGCACATTGACG 58.510 36.000 0.00 0.00 0.00 4.35
3791 4325 4.389374 CACACAGGGACTTCTACAATGTT 58.611 43.478 0.00 0.00 34.60 2.71
3924 4458 4.935352 TCTTGCCTAATTGTTGCTGTTT 57.065 36.364 0.00 0.00 0.00 2.83
3925 4459 6.264292 TCTTCTTGCCTAATTGTTGCTGTTTA 59.736 34.615 0.00 0.00 0.00 2.01
3931 4465 5.699839 CCTAATTGTTGCTGTTTACTCACC 58.300 41.667 0.00 0.00 0.00 4.02
3954 4491 7.716998 CACCTAGCAATAAACCTGAGACATAAT 59.283 37.037 0.00 0.00 0.00 1.28
3955 4492 8.275040 ACCTAGCAATAAACCTGAGACATAATT 58.725 33.333 0.00 0.00 0.00 1.40
3987 4524 6.438425 ACTTGACCTATGCTCCAAAATTTCAT 59.562 34.615 0.00 0.00 0.00 2.57
4248 4786 1.267574 ATCCATGTGGCCAGTCTCGT 61.268 55.000 5.11 0.00 34.44 4.18
4325 4863 4.203226 TGTCTTGTTGCCTGAATGTGTAA 58.797 39.130 0.00 0.00 0.00 2.41
4326 4864 4.036262 TGTCTTGTTGCCTGAATGTGTAAC 59.964 41.667 0.00 0.00 37.35 2.50
4327 4865 3.249799 TCTTGTTGCCTGAATGTGTAACG 59.750 43.478 0.00 0.00 42.39 3.18
4328 4866 2.566913 TGTTGCCTGAATGTGTAACGT 58.433 42.857 0.00 0.00 42.39 3.99
4345 4883 7.011763 TGTGTAACGTTAATCGCTATACTCTCT 59.988 37.037 10.11 0.00 42.39 3.10
4412 4950 3.552132 TCCTGCATTAGAATTACCGCA 57.448 42.857 0.00 0.00 0.00 5.69
4416 4954 4.009798 TGCATTAGAATTACCGCAAACG 57.990 40.909 0.00 0.00 39.67 3.60
4418 4956 4.083217 TGCATTAGAATTACCGCAAACGTT 60.083 37.500 0.00 0.00 37.70 3.99
4426 4964 1.654317 ACCGCAAACGTTGACTGTAA 58.346 45.000 0.00 0.00 37.70 2.41
4429 4967 2.223066 CCGCAAACGTTGACTGTAAACA 60.223 45.455 0.00 0.00 37.70 2.83
4430 4968 3.547214 CCGCAAACGTTGACTGTAAACAT 60.547 43.478 0.00 0.00 37.70 2.71
4432 4970 4.605594 CGCAAACGTTGACTGTAAACATAC 59.394 41.667 0.00 0.00 33.53 2.39
4433 4971 5.503498 GCAAACGTTGACTGTAAACATACA 58.497 37.500 0.00 0.00 0.00 2.29
4468 5006 7.616313 ACTATTATCCTGTCTTATTGCTAGGC 58.384 38.462 0.00 0.00 0.00 3.93
4535 5073 5.511234 AGCAAGCAAATATCAGGTGATTC 57.489 39.130 0.00 0.00 36.05 2.52
4545 5083 8.964772 CAAATATCAGGTGATTCCTTCTTTCTT 58.035 33.333 0.00 0.00 45.67 2.52
4561 5099 8.579863 CCTTCTTTCTTTATTGATTTGTCCAGT 58.420 33.333 0.00 0.00 0.00 4.00
4689 5227 2.092484 TGGCTGTGGCTAATGCTCATAA 60.092 45.455 0.00 0.00 39.59 1.90
4692 5230 3.120408 GCTGTGGCTAATGCTCATAATCG 60.120 47.826 0.00 0.00 39.59 3.34
4928 5467 4.510571 TCCTTTATCTAAAACCGGACTGC 58.489 43.478 9.46 0.00 0.00 4.40
5126 5665 5.221904 TGTTGATCCTTCTTCACATCCTCAA 60.222 40.000 0.00 0.00 0.00 3.02
5166 5705 2.808543 CAGGTCAGTGGAAGCACTTTAC 59.191 50.000 0.00 0.00 32.26 2.01
5169 5708 3.189287 GGTCAGTGGAAGCACTTTACATG 59.811 47.826 0.00 0.00 32.26 3.21
5359 5898 4.994852 TGGACAATCTTGAGAAAGTTACCG 59.005 41.667 0.00 0.00 0.00 4.02
5392 5932 2.414994 AACCATCAGTCAGCAGGATG 57.585 50.000 0.00 0.00 38.47 3.51
5437 5978 1.376466 GGCCCTCAAAGCTCAGTGA 59.624 57.895 0.00 0.00 0.00 3.41
5478 6019 8.514594 TCTCTTGTAAACCATTCATGACATTTC 58.485 33.333 0.00 0.00 0.00 2.17
5585 6126 1.202348 CCAACAAAACACATGCCGACA 60.202 47.619 0.00 0.00 0.00 4.35
5675 6216 5.639506 CCTCTACACACTGAACAAGGTAATG 59.360 44.000 0.00 0.00 0.00 1.90
5676 6217 5.547465 TCTACACACTGAACAAGGTAATGG 58.453 41.667 0.00 0.00 0.00 3.16
5681 6222 5.182950 CACACTGAACAAGGTAATGGCATTA 59.817 40.000 15.73 15.73 0.00 1.90
5701 6242 7.984422 CATTATGTGCCCATATCTCAGTTAA 57.016 36.000 0.00 0.00 33.63 2.01
5703 6244 9.671279 CATTATGTGCCCATATCTCAGTTAATA 57.329 33.333 0.00 0.00 33.63 0.98
5704 6245 9.672673 ATTATGTGCCCATATCTCAGTTAATAC 57.327 33.333 0.00 0.00 33.63 1.89
5732 6284 7.696992 AAACTTGAAAACTAACACCAAGAGA 57.303 32.000 0.00 0.00 38.02 3.10
5733 6285 7.696992 AACTTGAAAACTAACACCAAGAGAA 57.303 32.000 0.00 0.00 38.02 2.87
5734 6286 7.085052 ACTTGAAAACTAACACCAAGAGAAC 57.915 36.000 0.00 0.00 38.02 3.01
5735 6287 6.657541 ACTTGAAAACTAACACCAAGAGAACA 59.342 34.615 0.00 0.00 38.02 3.18
5737 6289 6.177610 TGAAAACTAACACCAAGAGAACACT 58.822 36.000 0.00 0.00 0.00 3.55
5739 6291 6.679327 AAACTAACACCAAGAGAACACTTC 57.321 37.500 0.00 0.00 0.00 3.01
5774 6328 0.606401 ACTCCAAGGGCATGACAACG 60.606 55.000 0.00 0.00 0.00 4.10
5807 6361 2.022428 TCCACACTGTGGGGAGGTATAT 60.022 50.000 27.37 0.00 46.95 0.86
5812 6366 3.008375 CACTGTGGGGAGGTATATCCATG 59.992 52.174 0.00 0.00 41.52 3.66
5822 6376 4.586884 AGGTATATCCATGCTGCATCTTG 58.413 43.478 13.10 3.21 39.02 3.02
5828 6382 3.392882 TCCATGCTGCATCTTGTATACG 58.607 45.455 13.10 0.00 0.00 3.06
5830 6384 3.561310 CCATGCTGCATCTTGTATACGTT 59.439 43.478 13.10 0.00 0.00 3.99
5831 6385 4.035558 CCATGCTGCATCTTGTATACGTTT 59.964 41.667 13.10 0.00 0.00 3.60
5832 6386 4.857871 TGCTGCATCTTGTATACGTTTC 57.142 40.909 0.00 0.00 0.00 2.78
5833 6387 4.503910 TGCTGCATCTTGTATACGTTTCT 58.496 39.130 0.00 0.00 0.00 2.52
5834 6388 4.329801 TGCTGCATCTTGTATACGTTTCTG 59.670 41.667 0.00 0.00 0.00 3.02
5835 6389 4.330074 GCTGCATCTTGTATACGTTTCTGT 59.670 41.667 0.00 0.00 0.00 3.41
5837 6391 6.620733 GCTGCATCTTGTATACGTTTCTGTTT 60.621 38.462 0.00 0.00 0.00 2.83
5838 6392 7.197071 TGCATCTTGTATACGTTTCTGTTTT 57.803 32.000 0.00 0.00 0.00 2.43
5839 6393 7.644490 TGCATCTTGTATACGTTTCTGTTTTT 58.356 30.769 0.00 0.00 0.00 1.94
5840 6394 7.589587 TGCATCTTGTATACGTTTCTGTTTTTG 59.410 33.333 0.00 0.00 0.00 2.44
5843 6397 9.659830 ATCTTGTATACGTTTCTGTTTTTGAAC 57.340 29.630 0.00 0.00 0.00 3.18
5846 6400 9.843334 TTGTATACGTTTCTGTTTTTGAACTTT 57.157 25.926 0.00 0.00 0.00 2.66
5850 6404 7.701809 ACGTTTCTGTTTTTGAACTTTTTGA 57.298 28.000 0.00 0.00 0.00 2.69
5852 6406 7.222999 ACGTTTCTGTTTTTGAACTTTTTGACA 59.777 29.630 0.00 0.00 0.00 3.58
5853 6407 7.735586 CGTTTCTGTTTTTGAACTTTTTGACAG 59.264 33.333 0.00 0.00 35.73 3.51
5854 6408 8.547894 GTTTCTGTTTTTGAACTTTTTGACAGT 58.452 29.630 0.00 0.00 35.84 3.55
5868 6521 4.979943 TTGACAGTGTTCTGCATTTGAA 57.020 36.364 0.00 0.00 44.77 2.69
5892 6545 9.820229 GAATTGAACACGTTGTCTTAATGATTA 57.180 29.630 0.00 0.00 0.00 1.75
6134 6788 9.279108 TCTCCTTTGAGCAACAACTCATTGTTC 62.279 40.741 2.48 0.00 45.05 3.18
6188 6842 6.575162 TTTTTCTTAAGAGGCCTGAATGTC 57.425 37.500 12.00 0.00 0.00 3.06
6191 6845 3.452627 TCTTAAGAGGCCTGAATGTCTCC 59.547 47.826 12.00 0.00 0.00 3.71
6210 6864 0.528470 CCTCTCAACTGACGACCCTC 59.472 60.000 0.00 0.00 0.00 4.30
6237 6891 6.420903 GCAAATTCACCTAACAAAAGAACCTC 59.579 38.462 0.00 0.00 0.00 3.85
6285 6939 1.749063 CGGTAAATTCCTTTGCTCCCC 59.251 52.381 0.00 0.00 0.00 4.81
6286 6940 2.620627 CGGTAAATTCCTTTGCTCCCCT 60.621 50.000 0.00 0.00 0.00 4.79
6287 6941 3.371166 CGGTAAATTCCTTTGCTCCCCTA 60.371 47.826 0.00 0.00 0.00 3.53
6306 6960 3.449018 CCTACCACTATGTGCTCTGTTCT 59.551 47.826 0.00 0.00 31.34 3.01
6307 6961 3.325293 ACCACTATGTGCTCTGTTCTG 57.675 47.619 0.00 0.00 31.34 3.02
6316 6970 0.536006 GCTCTGTTCTGTGCCCACTT 60.536 55.000 0.00 0.00 0.00 3.16
6341 6997 3.134458 CCTGCCTAATTCTTGATCGACC 58.866 50.000 0.00 0.00 0.00 4.79
6380 7036 3.437049 GTGGAAGCTTAGTTCATGTGACC 59.563 47.826 0.00 0.00 0.00 4.02
6415 7071 3.600388 CAGGAATTCTGTGTACCAGTCC 58.400 50.000 5.23 9.80 42.19 3.85
6440 7096 5.071115 GGTTTCTCTCATAGGCTGAAGGTAT 59.929 44.000 0.00 0.00 32.14 2.73
6607 7270 4.074970 ACCAGACAAATGTTCCTCACATC 58.925 43.478 0.00 0.00 46.23 3.06
6701 7387 2.233431 TGTGCTTGGGTTGATAATTGCC 59.767 45.455 0.00 0.00 0.00 4.52
6811 7500 2.053627 GATGTTGCGGCAGTTTTCAAG 58.946 47.619 1.67 0.00 0.00 3.02
6831 7523 2.176546 CCACGCGTTTCAGGCATG 59.823 61.111 10.22 0.00 0.00 4.06
6853 7545 0.826256 ACCCCGTTTTCTGGGCTTTC 60.826 55.000 0.00 0.00 46.50 2.62
6967 7659 6.777091 TGTATAGGCAAATGTTAGCATGGAAT 59.223 34.615 0.00 0.00 35.15 3.01
7040 7736 0.232559 ATCGTCGCTCACTCGATACG 59.767 55.000 0.00 0.00 41.46 3.06
7090 7789 5.379732 TGTATCTTTTGCTTTTTACCCGG 57.620 39.130 0.00 0.00 0.00 5.73
7093 7792 4.513198 TCTTTTGCTTTTTACCCGGATG 57.487 40.909 0.73 0.00 0.00 3.51
7145 7858 9.197694 CTATTAGAGATTCACCGGTTATTTCTG 57.802 37.037 21.15 5.02 0.00 3.02
7149 7862 4.630069 AGATTCACCGGTTATTTCTGTTCG 59.370 41.667 2.97 0.00 0.00 3.95
7152 7865 3.742369 TCACCGGTTATTTCTGTTCGAAC 59.258 43.478 21.42 21.42 0.00 3.95
7169 7882 8.058667 TGTTCGAACAGGACTAGTATATTTGA 57.941 34.615 26.53 0.00 34.30 2.69
7188 7901 6.942532 TTTGATATCATAAGTTGCAGTCCC 57.057 37.500 6.17 0.00 0.00 4.46
7190 7903 6.994421 TGATATCATAAGTTGCAGTCCCTA 57.006 37.500 0.00 0.00 0.00 3.53
7191 7904 7.559335 TGATATCATAAGTTGCAGTCCCTAT 57.441 36.000 0.00 0.00 0.00 2.57
7193 7906 5.636903 ATCATAAGTTGCAGTCCCTATGT 57.363 39.130 0.00 0.00 0.00 2.29
7194 7907 5.023533 TCATAAGTTGCAGTCCCTATGTC 57.976 43.478 0.00 0.00 0.00 3.06
7197 7910 0.618458 GTTGCAGTCCCTATGTCCCA 59.382 55.000 0.00 0.00 0.00 4.37
7199 7912 0.546507 TGCAGTCCCTATGTCCCACA 60.547 55.000 0.00 0.00 0.00 4.17
7200 7913 0.618458 GCAGTCCCTATGTCCCACAA 59.382 55.000 0.00 0.00 0.00 3.33
7201 7914 1.212935 GCAGTCCCTATGTCCCACAAT 59.787 52.381 0.00 0.00 0.00 2.71
7202 7915 2.438021 GCAGTCCCTATGTCCCACAATA 59.562 50.000 0.00 0.00 0.00 1.90
7203 7916 3.073062 GCAGTCCCTATGTCCCACAATAT 59.927 47.826 0.00 0.00 0.00 1.28
7204 7917 4.286032 GCAGTCCCTATGTCCCACAATATA 59.714 45.833 0.00 0.00 0.00 0.86
7205 7918 5.221843 GCAGTCCCTATGTCCCACAATATAA 60.222 44.000 0.00 0.00 0.00 0.98
7206 7919 6.467677 CAGTCCCTATGTCCCACAATATAAG 58.532 44.000 0.00 0.00 0.00 1.73
7207 7920 6.270000 CAGTCCCTATGTCCCACAATATAAGA 59.730 42.308 0.00 0.00 0.00 2.10
7208 7921 7.025620 AGTCCCTATGTCCCACAATATAAGAT 58.974 38.462 0.00 0.00 0.00 2.40
7209 7922 8.184249 AGTCCCTATGTCCCACAATATAAGATA 58.816 37.037 0.00 0.00 0.00 1.98
7210 7923 8.993424 GTCCCTATGTCCCACAATATAAGATAT 58.007 37.037 0.00 0.00 0.00 1.63
7211 7924 9.574577 TCCCTATGTCCCACAATATAAGATATT 57.425 33.333 0.00 0.00 0.00 1.28
7217 7930 9.337396 TGTCCCACAATATAAGATATTTCACAC 57.663 33.333 0.00 0.00 0.00 3.82
7218 7931 9.337396 GTCCCACAATATAAGATATTTCACACA 57.663 33.333 0.00 0.00 0.00 3.72
7228 7941 9.793252 ATAAGATATTTCACACATGTTTTGAGC 57.207 29.630 0.00 0.00 0.00 4.26
7259 7996 3.434299 GTGTATGTTTGGTGTCGGTTAGG 59.566 47.826 0.00 0.00 0.00 2.69
7263 8000 1.605232 GTTTGGTGTCGGTTAGGGTTG 59.395 52.381 0.00 0.00 0.00 3.77
7267 8004 2.300433 GGTGTCGGTTAGGGTTGTTTT 58.700 47.619 0.00 0.00 0.00 2.43
7270 8007 3.002965 GTGTCGGTTAGGGTTGTTTTCTG 59.997 47.826 0.00 0.00 0.00 3.02
7271 8008 2.031420 GTCGGTTAGGGTTGTTTTCTGC 60.031 50.000 0.00 0.00 0.00 4.26
7409 8150 4.487412 GTGATGCAAGCTGGCCGC 62.487 66.667 11.50 11.02 39.57 6.53
7434 8176 2.839486 TCCGAGAACTCACAAATGCT 57.161 45.000 2.78 0.00 0.00 3.79
7435 8177 3.953712 TCCGAGAACTCACAAATGCTA 57.046 42.857 2.78 0.00 0.00 3.49
7436 8178 4.471904 TCCGAGAACTCACAAATGCTAT 57.528 40.909 2.78 0.00 0.00 2.97
7437 8179 4.183865 TCCGAGAACTCACAAATGCTATG 58.816 43.478 2.78 0.00 0.00 2.23
7438 8180 3.242543 CCGAGAACTCACAAATGCTATGC 60.243 47.826 2.78 0.00 0.00 3.14
7439 8181 3.620374 CGAGAACTCACAAATGCTATGCT 59.380 43.478 2.78 0.00 0.00 3.79
7440 8182 4.805719 CGAGAACTCACAAATGCTATGCTA 59.194 41.667 2.78 0.00 0.00 3.49
7441 8183 5.464722 CGAGAACTCACAAATGCTATGCTAT 59.535 40.000 2.78 0.00 0.00 2.97
7442 8184 6.563567 CGAGAACTCACAAATGCTATGCTATG 60.564 42.308 2.78 0.00 0.00 2.23
7443 8185 4.825546 ACTCACAAATGCTATGCTATGC 57.174 40.909 0.00 0.00 0.00 3.14
7444 8186 4.458397 ACTCACAAATGCTATGCTATGCT 58.542 39.130 0.00 0.00 0.00 3.79
7492 8270 1.988107 CACCCCTAGCATCATACCCAT 59.012 52.381 0.00 0.00 0.00 4.00
7514 8292 3.372822 TGTTGGTGTCTCGAACAAAACTC 59.627 43.478 17.82 4.39 40.68 3.01
7527 8305 4.483476 ACAAAACTCAATGGAAGTACGC 57.517 40.909 0.00 0.00 0.00 4.42
7554 8332 4.617875 AGCCATGACGCTGGTTAC 57.382 55.556 0.00 0.00 37.82 2.50
7555 8333 1.676968 AGCCATGACGCTGGTTACA 59.323 52.632 0.00 0.00 37.82 2.41
7627 8432 1.593006 GACTTCACGTCACCTGTGTTG 59.407 52.381 0.00 0.00 42.37 3.33
7653 8458 6.349300 TGCTTCCTCTGGTTTCTTGATATAC 58.651 40.000 0.00 0.00 0.00 1.47
7654 8459 6.070251 TGCTTCCTCTGGTTTCTTGATATACA 60.070 38.462 0.00 0.00 0.00 2.29
7655 8460 6.823689 GCTTCCTCTGGTTTCTTGATATACAA 59.176 38.462 0.00 0.00 36.97 2.41
7693 8498 3.251004 GGAATAATCATTGAGCCACGGAC 59.749 47.826 0.00 0.00 0.00 4.79
7717 8522 7.145323 ACGAAAAACAAGAACAGGAATAATGG 58.855 34.615 0.00 0.00 0.00 3.16
7732 8537 6.618196 AGGAATAATGGCCCAACTACTAGTTA 59.382 38.462 0.00 0.00 36.03 2.24
7734 8539 7.228108 GGAATAATGGCCCAACTACTAGTTAAC 59.772 40.741 0.00 0.00 36.03 2.01
7751 8556 4.631773 CCAGAGCAGTGGTCCATG 57.368 61.111 18.47 11.15 32.32 3.66
7757 8562 1.555075 GAGCAGTGGTCCATGTTCCTA 59.445 52.381 11.37 0.00 0.00 2.94
7765 8570 3.288092 GGTCCATGTTCCTATTTCACCC 58.712 50.000 0.00 0.00 0.00 4.61
7775 8580 5.310409 TCCTATTTCACCCTTCATCATCC 57.690 43.478 0.00 0.00 0.00 3.51
7787 8598 2.693210 TCATCATCCTGCCACTCCATA 58.307 47.619 0.00 0.00 0.00 2.74
7792 8603 3.010027 TCATCCTGCCACTCCATACAAAA 59.990 43.478 0.00 0.00 0.00 2.44
7803 8615 5.752472 CACTCCATACAAAAACACATTTGCA 59.248 36.000 0.00 0.00 42.68 4.08
7819 8631 1.100463 TGCAAGCCTTTCGTGCTTCA 61.100 50.000 4.68 0.00 45.58 3.02
7848 8660 8.677148 AAAGAATTACTTACTCACAGCTTGAA 57.323 30.769 0.00 0.00 37.93 2.69
7862 8674 4.402155 ACAGCTTGAAAACAGATTGGTTGA 59.598 37.500 0.00 0.00 0.00 3.18
7905 8721 4.338400 AGAAAACCCGGAGACAAAAAGAAG 59.662 41.667 0.73 0.00 0.00 2.85
7911 8738 4.154918 CCCGGAGACAAAAAGAAGAAGATG 59.845 45.833 0.73 0.00 0.00 2.90
7965 8811 3.568907 GACGACGACGACGACTGCA 62.569 63.158 25.15 0.00 42.66 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.671279 TGCAAGTGAGAAATAAAATCAGAGATA 57.329 29.630 0.00 0.00 0.00 1.98
1 2 8.571461 TGCAAGTGAGAAATAAAATCAGAGAT 57.429 30.769 0.00 0.00 0.00 2.75
2 3 7.984422 TGCAAGTGAGAAATAAAATCAGAGA 57.016 32.000 0.00 0.00 0.00 3.10
3 4 8.456471 TCATGCAAGTGAGAAATAAAATCAGAG 58.544 33.333 0.00 0.00 0.00 3.35
4 5 8.239314 GTCATGCAAGTGAGAAATAAAATCAGA 58.761 33.333 0.00 0.00 0.00 3.27
5 6 8.242053 AGTCATGCAAGTGAGAAATAAAATCAG 58.758 33.333 0.00 0.00 0.00 2.90
6 7 8.114331 AGTCATGCAAGTGAGAAATAAAATCA 57.886 30.769 0.00 0.00 0.00 2.57
7 8 8.976986 AAGTCATGCAAGTGAGAAATAAAATC 57.023 30.769 0.00 0.00 0.00 2.17
10 11 9.453572 AGATAAGTCATGCAAGTGAGAAATAAA 57.546 29.630 0.00 0.00 0.00 1.40
13 14 9.624373 AATAGATAAGTCATGCAAGTGAGAAAT 57.376 29.630 0.00 0.00 0.00 2.17
14 15 8.886719 CAATAGATAAGTCATGCAAGTGAGAAA 58.113 33.333 0.00 0.00 0.00 2.52
15 16 7.011763 GCAATAGATAAGTCATGCAAGTGAGAA 59.988 37.037 0.00 0.00 33.56 2.87
16 17 6.481313 GCAATAGATAAGTCATGCAAGTGAGA 59.519 38.462 0.00 0.00 33.56 3.27
17 18 6.482641 AGCAATAGATAAGTCATGCAAGTGAG 59.517 38.462 0.00 0.00 34.88 3.51
18 19 6.351711 AGCAATAGATAAGTCATGCAAGTGA 58.648 36.000 0.00 0.00 34.88 3.41
19 20 6.615264 AGCAATAGATAAGTCATGCAAGTG 57.385 37.500 0.00 0.00 34.88 3.16
20 21 6.825213 TCAAGCAATAGATAAGTCATGCAAGT 59.175 34.615 0.00 0.00 34.88 3.16
21 22 7.226128 TCTCAAGCAATAGATAAGTCATGCAAG 59.774 37.037 0.00 0.00 34.88 4.01
22 23 7.049754 TCTCAAGCAATAGATAAGTCATGCAA 58.950 34.615 0.00 0.00 34.88 4.08
23 24 6.585416 TCTCAAGCAATAGATAAGTCATGCA 58.415 36.000 0.00 0.00 34.88 3.96
24 25 7.488187 TTCTCAAGCAATAGATAAGTCATGC 57.512 36.000 0.00 0.00 33.54 4.06
32 33 9.817809 ACGACTTTATTTCTCAAGCAATAGATA 57.182 29.630 0.00 0.00 0.00 1.98
33 34 8.723942 ACGACTTTATTTCTCAAGCAATAGAT 57.276 30.769 0.00 0.00 0.00 1.98
34 35 8.547967 AACGACTTTATTTCTCAAGCAATAGA 57.452 30.769 0.00 0.00 0.00 1.98
35 36 9.612620 AAAACGACTTTATTTCTCAAGCAATAG 57.387 29.630 0.00 0.00 0.00 1.73
36 37 9.959749 AAAAACGACTTTATTTCTCAAGCAATA 57.040 25.926 0.00 0.00 0.00 1.90
37 38 8.871686 AAAAACGACTTTATTTCTCAAGCAAT 57.128 26.923 0.00 0.00 0.00 3.56
38 39 7.434013 GGAAAAACGACTTTATTTCTCAAGCAA 59.566 33.333 0.00 0.00 33.42 3.91
39 40 6.915843 GGAAAAACGACTTTATTTCTCAAGCA 59.084 34.615 0.00 0.00 33.42 3.91
40 41 7.113544 CAGGAAAAACGACTTTATTTCTCAAGC 59.886 37.037 0.00 0.00 33.42 4.01
41 42 8.129211 ACAGGAAAAACGACTTTATTTCTCAAG 58.871 33.333 0.00 0.00 33.42 3.02
42 43 7.992008 ACAGGAAAAACGACTTTATTTCTCAA 58.008 30.769 0.00 0.00 33.42 3.02
43 44 7.562454 ACAGGAAAAACGACTTTATTTCTCA 57.438 32.000 0.00 0.00 33.42 3.27
44 45 9.940166 TTTACAGGAAAAACGACTTTATTTCTC 57.060 29.630 0.00 0.00 33.42 2.87
74 75 5.022021 CGTTGAAGAACAAGTGTCAAGTTC 58.978 41.667 0.00 0.00 41.37 3.01
75 76 4.693566 TCGTTGAAGAACAAGTGTCAAGTT 59.306 37.500 0.00 0.00 39.30 2.66
76 77 4.250464 TCGTTGAAGAACAAGTGTCAAGT 58.750 39.130 0.00 0.00 39.30 3.16
77 78 4.857871 TCGTTGAAGAACAAGTGTCAAG 57.142 40.909 0.00 0.00 39.30 3.02
87 88 1.161563 TGCCCCGTTCGTTGAAGAAC 61.162 55.000 0.21 0.21 45.05 3.01
88 89 0.882927 CTGCCCCGTTCGTTGAAGAA 60.883 55.000 0.00 0.00 0.00 2.52
89 90 1.301401 CTGCCCCGTTCGTTGAAGA 60.301 57.895 0.00 0.00 0.00 2.87
90 91 0.882927 TTCTGCCCCGTTCGTTGAAG 60.883 55.000 0.00 0.00 0.00 3.02
91 92 0.464013 TTTCTGCCCCGTTCGTTGAA 60.464 50.000 0.00 0.00 0.00 2.69
92 93 0.464013 TTTTCTGCCCCGTTCGTTGA 60.464 50.000 0.00 0.00 0.00 3.18
93 94 0.596082 ATTTTCTGCCCCGTTCGTTG 59.404 50.000 0.00 0.00 0.00 4.10
94 95 2.188062 TATTTTCTGCCCCGTTCGTT 57.812 45.000 0.00 0.00 0.00 3.85
95 96 2.188062 TTATTTTCTGCCCCGTTCGT 57.812 45.000 0.00 0.00 0.00 3.85
96 97 2.226912 TGTTTATTTTCTGCCCCGTTCG 59.773 45.455 0.00 0.00 0.00 3.95
97 98 3.926821 TGTTTATTTTCTGCCCCGTTC 57.073 42.857 0.00 0.00 0.00 3.95
98 99 4.882842 ATTGTTTATTTTCTGCCCCGTT 57.117 36.364 0.00 0.00 0.00 4.44
99 100 4.282195 TCAATTGTTTATTTTCTGCCCCGT 59.718 37.500 5.13 0.00 0.00 5.28
100 101 4.815269 TCAATTGTTTATTTTCTGCCCCG 58.185 39.130 5.13 0.00 0.00 5.73
101 102 6.313658 GTCATCAATTGTTTATTTTCTGCCCC 59.686 38.462 5.13 0.00 0.00 5.80
102 103 7.099120 AGTCATCAATTGTTTATTTTCTGCCC 58.901 34.615 5.13 0.00 0.00 5.36
103 104 8.538409 AAGTCATCAATTGTTTATTTTCTGCC 57.462 30.769 5.13 0.00 0.00 4.85
104 105 8.650714 GGAAGTCATCAATTGTTTATTTTCTGC 58.349 33.333 5.13 0.00 0.00 4.26
105 106 9.695526 TGGAAGTCATCAATTGTTTATTTTCTG 57.304 29.630 5.13 0.00 0.00 3.02
106 107 9.918630 CTGGAAGTCATCAATTGTTTATTTTCT 57.081 29.630 5.13 0.00 0.00 2.52
126 127 6.594159 ACGACCACTTCAATAAATACTGGAAG 59.406 38.462 0.00 0.00 40.50 3.46
127 128 6.469410 ACGACCACTTCAATAAATACTGGAA 58.531 36.000 0.00 0.00 0.00 3.53
128 129 6.045072 ACGACCACTTCAATAAATACTGGA 57.955 37.500 0.00 0.00 0.00 3.86
129 130 7.039882 AGTACGACCACTTCAATAAATACTGG 58.960 38.462 0.00 0.00 0.00 4.00
130 131 7.758076 TGAGTACGACCACTTCAATAAATACTG 59.242 37.037 0.00 0.00 0.00 2.74
131 132 7.833786 TGAGTACGACCACTTCAATAAATACT 58.166 34.615 0.00 0.00 0.00 2.12
132 133 8.470040 TTGAGTACGACCACTTCAATAAATAC 57.530 34.615 0.00 0.00 0.00 1.89
133 134 8.525316 TCTTGAGTACGACCACTTCAATAAATA 58.475 33.333 0.00 0.00 0.00 1.40
134 135 7.383687 TCTTGAGTACGACCACTTCAATAAAT 58.616 34.615 0.00 0.00 0.00 1.40
135 136 6.751157 TCTTGAGTACGACCACTTCAATAAA 58.249 36.000 0.00 0.00 0.00 1.40
136 137 6.335471 TCTTGAGTACGACCACTTCAATAA 57.665 37.500 0.00 0.00 0.00 1.40
137 138 5.970317 TCTTGAGTACGACCACTTCAATA 57.030 39.130 0.00 0.00 0.00 1.90
138 139 4.866508 TCTTGAGTACGACCACTTCAAT 57.133 40.909 0.00 0.00 0.00 2.57
139 140 4.556233 CATCTTGAGTACGACCACTTCAA 58.444 43.478 0.00 0.00 0.00 2.69
140 141 3.614150 GCATCTTGAGTACGACCACTTCA 60.614 47.826 0.00 0.00 0.00 3.02
141 142 2.924290 GCATCTTGAGTACGACCACTTC 59.076 50.000 0.00 0.00 0.00 3.01
142 143 2.299013 TGCATCTTGAGTACGACCACTT 59.701 45.455 0.00 0.00 0.00 3.16
143 144 1.893137 TGCATCTTGAGTACGACCACT 59.107 47.619 0.00 0.00 0.00 4.00
144 145 1.993370 GTGCATCTTGAGTACGACCAC 59.007 52.381 0.00 0.00 0.00 4.16
145 146 1.616374 TGTGCATCTTGAGTACGACCA 59.384 47.619 0.00 0.00 0.00 4.02
146 147 1.993370 GTGTGCATCTTGAGTACGACC 59.007 52.381 0.00 0.00 0.00 4.79
147 148 1.649171 CGTGTGCATCTTGAGTACGAC 59.351 52.381 0.00 0.00 32.36 4.34
148 149 1.268625 ACGTGTGCATCTTGAGTACGA 59.731 47.619 0.00 0.00 34.52 3.43
149 150 1.698165 ACGTGTGCATCTTGAGTACG 58.302 50.000 0.00 0.00 36.28 3.67
150 151 2.800544 ACAACGTGTGCATCTTGAGTAC 59.199 45.455 0.00 0.00 0.00 2.73
151 152 3.057019 GACAACGTGTGCATCTTGAGTA 58.943 45.455 0.00 0.00 0.00 2.59
152 153 1.867233 GACAACGTGTGCATCTTGAGT 59.133 47.619 0.00 0.00 0.00 3.41
153 154 2.138320 AGACAACGTGTGCATCTTGAG 58.862 47.619 0.00 0.00 0.00 3.02
154 155 2.135139 GAGACAACGTGTGCATCTTGA 58.865 47.619 0.00 0.00 0.00 3.02
155 156 1.195448 GGAGACAACGTGTGCATCTTG 59.805 52.381 0.00 0.00 0.00 3.02
156 157 1.512926 GGAGACAACGTGTGCATCTT 58.487 50.000 0.00 0.00 0.00 2.40
157 158 0.320771 GGGAGACAACGTGTGCATCT 60.321 55.000 0.00 0.00 0.00 2.90
158 159 0.320771 AGGGAGACAACGTGTGCATC 60.321 55.000 0.00 0.00 0.00 3.91
159 160 0.108585 AAGGGAGACAACGTGTGCAT 59.891 50.000 0.00 0.00 0.00 3.96
160 161 0.531974 GAAGGGAGACAACGTGTGCA 60.532 55.000 0.00 0.00 0.00 4.57
161 162 1.228657 GGAAGGGAGACAACGTGTGC 61.229 60.000 0.00 0.00 0.00 4.57
162 163 0.393077 AGGAAGGGAGACAACGTGTG 59.607 55.000 0.00 0.00 0.00 3.82
163 164 1.129058 AAGGAAGGGAGACAACGTGT 58.871 50.000 0.00 0.00 0.00 4.49
164 165 2.143925 GAAAGGAAGGGAGACAACGTG 58.856 52.381 0.00 0.00 0.00 4.49
165 166 2.047830 AGAAAGGAAGGGAGACAACGT 58.952 47.619 0.00 0.00 0.00 3.99
166 167 2.037251 TCAGAAAGGAAGGGAGACAACG 59.963 50.000 0.00 0.00 0.00 4.10
167 168 3.771577 TCAGAAAGGAAGGGAGACAAC 57.228 47.619 0.00 0.00 0.00 3.32
168 169 4.788925 TTTCAGAAAGGAAGGGAGACAA 57.211 40.909 0.00 0.00 0.00 3.18
176 177 6.603095 CGGTCAGTTAATTTCAGAAAGGAAG 58.397 40.000 1.28 0.00 0.00 3.46
182 183 4.320202 GCAAGCGGTCAGTTAATTTCAGAA 60.320 41.667 0.00 0.00 0.00 3.02
188 189 2.778299 TGAGCAAGCGGTCAGTTAATT 58.222 42.857 0.00 0.00 44.51 1.40
189 190 2.472695 TGAGCAAGCGGTCAGTTAAT 57.527 45.000 0.00 0.00 44.51 1.40
190 191 3.999821 TGAGCAAGCGGTCAGTTAA 57.000 47.368 0.00 0.00 44.51 2.01
223 224 1.862201 GTGGACGATGAAACGTGACAA 59.138 47.619 0.00 0.00 46.52 3.18
280 290 4.511454 TCAGATTTCAGTCCAACAAACTCG 59.489 41.667 0.00 0.00 0.00 4.18
288 298 4.780815 ACAACACTCAGATTTCAGTCCAA 58.219 39.130 0.00 0.00 0.00 3.53
306 316 1.873698 TTTGCTCGTGGAGGTACAAC 58.126 50.000 0.00 0.00 0.00 3.32
307 317 2.489971 CTTTTGCTCGTGGAGGTACAA 58.510 47.619 0.00 0.00 0.00 2.41
323 333 5.073008 ACATATTGGGGGAAACTTTGCTTTT 59.927 36.000 0.00 0.00 0.00 2.27
364 374 6.369890 AGTGAAGCGGTGATTTATGCATATAG 59.630 38.462 7.36 0.00 0.00 1.31
366 376 5.049198 CAGTGAAGCGGTGATTTATGCATAT 60.049 40.000 7.36 0.00 0.00 1.78
367 377 4.273235 CAGTGAAGCGGTGATTTATGCATA 59.727 41.667 1.16 1.16 0.00 3.14
370 380 2.792542 GCAGTGAAGCGGTGATTTATGC 60.793 50.000 0.00 0.00 0.00 3.14
408 462 2.995258 GCACATTACATGCCTTGGTTTG 59.005 45.455 0.00 0.00 37.08 2.93
409 463 2.632028 TGCACATTACATGCCTTGGTTT 59.368 40.909 0.00 0.00 42.69 3.27
410 464 2.246469 TGCACATTACATGCCTTGGTT 58.754 42.857 0.00 0.00 42.69 3.67
411 465 1.921982 TGCACATTACATGCCTTGGT 58.078 45.000 0.00 0.00 42.69 3.67
412 466 3.380954 TGTATGCACATTACATGCCTTGG 59.619 43.478 0.00 0.00 42.69 3.61
414 468 3.065233 CGTGTATGCACATTACATGCCTT 59.935 43.478 14.55 0.00 45.50 4.35
415 469 2.613595 CGTGTATGCACATTACATGCCT 59.386 45.455 14.55 0.00 45.50 4.75
416 470 2.354510 ACGTGTATGCACATTACATGCC 59.645 45.455 14.55 0.00 45.50 4.40
417 471 3.673746 ACGTGTATGCACATTACATGC 57.326 42.857 14.55 0.00 45.50 4.06
433 505 3.676172 TGTACTCGCCAAATAGAAACGTG 59.324 43.478 0.00 0.00 0.00 4.49
434 506 3.916761 TGTACTCGCCAAATAGAAACGT 58.083 40.909 0.00 0.00 0.00 3.99
435 507 4.914312 TTGTACTCGCCAAATAGAAACG 57.086 40.909 0.00 0.00 0.00 3.60
458 530 7.663081 CAGGAATATTTGTAGCAGATGTACCAT 59.337 37.037 0.00 0.00 0.00 3.55
467 550 3.248602 GCGTCCAGGAATATTTGTAGCAG 59.751 47.826 0.00 0.00 0.00 4.24
474 557 3.297134 ACCATGCGTCCAGGAATATTT 57.703 42.857 0.00 0.00 0.00 1.40
475 558 3.297134 AACCATGCGTCCAGGAATATT 57.703 42.857 0.00 0.00 0.00 1.28
476 559 3.646162 TCTAACCATGCGTCCAGGAATAT 59.354 43.478 0.00 0.00 0.00 1.28
477 560 3.035363 TCTAACCATGCGTCCAGGAATA 58.965 45.455 0.00 0.00 0.00 1.75
478 561 1.837439 TCTAACCATGCGTCCAGGAAT 59.163 47.619 0.00 0.00 0.00 3.01
479 562 1.207089 CTCTAACCATGCGTCCAGGAA 59.793 52.381 0.00 0.00 0.00 3.36
480 563 0.824109 CTCTAACCATGCGTCCAGGA 59.176 55.000 0.00 0.00 0.00 3.86
481 564 0.811616 GCTCTAACCATGCGTCCAGG 60.812 60.000 0.00 0.00 0.00 4.45
482 565 0.108186 TGCTCTAACCATGCGTCCAG 60.108 55.000 0.00 0.00 0.00 3.86
483 566 0.541392 ATGCTCTAACCATGCGTCCA 59.459 50.000 0.00 0.00 0.00 4.02
484 567 1.221414 GATGCTCTAACCATGCGTCC 58.779 55.000 0.00 0.00 36.91 4.79
485 568 1.221414 GGATGCTCTAACCATGCGTC 58.779 55.000 0.00 0.00 40.74 5.19
486 569 0.541392 TGGATGCTCTAACCATGCGT 59.459 50.000 0.00 0.00 34.25 5.24
504 587 3.044809 CGGACAGTGACCGGTTATG 57.955 57.895 23.81 10.92 45.65 1.90
530 613 2.022129 CCTGCAGACGTGACCGAAC 61.022 63.158 17.39 0.00 37.88 3.95
532 615 4.357947 GCCTGCAGACGTGACCGA 62.358 66.667 17.39 0.00 37.88 4.69
534 617 4.664677 ACGCCTGCAGACGTGACC 62.665 66.667 27.56 0.00 41.76 4.02
535 618 2.244651 AAACGCCTGCAGACGTGAC 61.245 57.895 28.72 3.01 42.68 3.67
539 622 2.671177 CCTCAAACGCCTGCAGACG 61.671 63.158 21.42 21.42 0.00 4.18
542 625 3.058160 CCCCTCAAACGCCTGCAG 61.058 66.667 6.78 6.78 0.00 4.41
543 626 3.842925 GACCCCTCAAACGCCTGCA 62.843 63.158 0.00 0.00 0.00 4.41
546 629 4.016706 CGGACCCCTCAAACGCCT 62.017 66.667 0.00 0.00 0.00 5.52
549 632 0.802494 CAAATCGGACCCCTCAAACG 59.198 55.000 0.00 0.00 0.00 3.60
558 641 1.134907 TCGGACTTAGCAAATCGGACC 60.135 52.381 0.00 0.00 0.00 4.46
562 645 7.463383 GCATCTATAATCGGACTTAGCAAATCG 60.463 40.741 0.00 0.00 0.00 3.34
584 667 8.263940 TGTTAGTTGGTGTAAATAAGAGCATC 57.736 34.615 0.00 0.00 30.31 3.91
618 702 3.429207 GCTTTTATACTAGCCTAGCGCAC 59.571 47.826 11.47 0.00 41.38 5.34
630 714 7.094592 GCAGAAAACTTCTCAGGCTTTTATACT 60.095 37.037 0.00 0.00 38.11 2.12
638 722 2.645838 TGCAGAAAACTTCTCAGGCT 57.354 45.000 0.00 0.00 38.11 4.58
642 726 5.833406 TCACATTTGCAGAAAACTTCTCA 57.167 34.783 0.00 0.00 38.11 3.27
675 759 7.682628 TGGAGTATTATTAAAATCTACCCCCG 58.317 38.462 0.00 0.00 0.00 5.73
688 772 9.472361 GCACGAGATAAGTTTGGAGTATTATTA 57.528 33.333 0.00 0.00 0.00 0.98
691 775 5.975344 CGCACGAGATAAGTTTGGAGTATTA 59.025 40.000 0.00 0.00 0.00 0.98
705 789 5.849604 CGATTTGTATCTAACGCACGAGATA 59.150 40.000 0.00 0.00 34.28 1.98
736 822 6.709018 TGTATCTGTCATCCGTCATTTCTA 57.291 37.500 0.00 0.00 0.00 2.10
747 833 8.657729 GTTGATGATGATGATGTATCTGTCATC 58.342 37.037 20.99 20.99 45.81 2.92
748 834 8.376270 AGTTGATGATGATGATGTATCTGTCAT 58.624 33.333 10.78 10.78 40.86 3.06
749 835 7.732996 AGTTGATGATGATGATGTATCTGTCA 58.267 34.615 0.00 0.00 36.38 3.58
753 842 7.964624 ACTGAGTTGATGATGATGATGTATCT 58.035 34.615 0.00 0.00 36.71 1.98
769 858 6.868864 GCTACTCTTACAAATGACTGAGTTGA 59.131 38.462 0.00 0.00 36.39 3.18
776 865 6.360370 TCTTGGCTACTCTTACAAATGACT 57.640 37.500 0.00 0.00 0.00 3.41
791 880 9.921637 CCACTATTTTGTAATTTTTCTTGGCTA 57.078 29.630 0.00 0.00 0.00 3.93
804 893 9.603921 GGCTGTATTACTACCACTATTTTGTAA 57.396 33.333 0.00 0.00 0.00 2.41
828 934 1.171308 AATGCAGCATATCCATCGGC 58.829 50.000 8.75 0.00 0.00 5.54
843 949 1.821216 TCCACCTCGGAGAAAAATGC 58.179 50.000 6.58 0.00 39.64 3.56
1261 1754 4.824515 CTCCTCCGCGTCCTCCCT 62.825 72.222 4.92 0.00 0.00 4.20
1381 1892 0.110104 GGGATGCAGGAATCAGGAGG 59.890 60.000 0.00 0.00 0.00 4.30
1430 1941 2.047274 ACTACCACAAGCGCGCAT 60.047 55.556 35.10 20.88 0.00 4.73
1441 1952 1.391933 ATCGATGCCTCGCACTACCA 61.392 55.000 6.51 0.00 43.04 3.25
1483 1995 3.739300 CGGAACTACTGAACAAATCACGT 59.261 43.478 0.00 0.00 33.47 4.49
1504 2016 1.756375 GAACTGCATCCTAGCGCACG 61.756 60.000 11.47 0.00 37.31 5.34
1513 2027 1.639298 GCCACTGACGAACTGCATCC 61.639 60.000 0.00 0.00 0.00 3.51
1554 2070 2.486504 CCGACGCTAACACCGCTA 59.513 61.111 0.00 0.00 0.00 4.26
1590 2106 0.618458 GAGTACTGGGCCACAATGGA 59.382 55.000 0.00 0.00 40.96 3.41
1623 2139 3.004106 AGTGTACGGTATGCGAATAGGAC 59.996 47.826 0.00 0.00 0.00 3.85
1685 2211 0.527113 CGGATGCATTTGTGGAGCAA 59.473 50.000 0.00 0.00 42.15 3.91
1695 2221 3.157087 GGATACATTTCCCGGATGCATT 58.843 45.455 0.73 0.00 0.00 3.56
1769 2296 5.804692 TCAATTGTTTTGTCACTACACGT 57.195 34.783 5.13 0.00 34.61 4.49
1780 2307 6.949578 ACTGTGTCTGTTTCAATTGTTTTG 57.050 33.333 5.13 0.00 0.00 2.44
1781 2308 7.754924 CACTACTGTGTCTGTTTCAATTGTTTT 59.245 33.333 5.13 0.00 39.24 2.43
1857 2384 6.039616 GCTGTTACAAAACATGTTTTCTGGA 58.960 36.000 29.21 17.03 44.43 3.86
1862 2389 8.940768 ATTACAGCTGTTACAAAACATGTTTT 57.059 26.923 27.01 27.01 44.43 2.43
1881 2408 8.833493 TCATATGAAATGTCTTGCAGATTACAG 58.167 33.333 1.98 0.00 0.00 2.74
1903 2430 6.459024 GGCCAACATTAGCATAAAACGTCATA 60.459 38.462 0.00 0.00 0.00 2.15
1937 2464 2.263741 GGGCTTGCCTGAGTGTGTG 61.264 63.158 11.71 0.00 0.00 3.82
1938 2465 2.113986 GGGCTTGCCTGAGTGTGT 59.886 61.111 11.71 0.00 0.00 3.72
1939 2466 2.113774 TGGGCTTGCCTGAGTGTG 59.886 61.111 11.71 0.00 0.00 3.82
1940 2467 1.127567 TAGTGGGCTTGCCTGAGTGT 61.128 55.000 11.71 0.00 0.00 3.55
2030 2561 2.259266 TGCTCTCAAATGTGCTGACA 57.741 45.000 0.00 0.00 36.22 3.58
2057 2588 3.547813 CGAGATCAACATCCTCGTCTGAG 60.548 52.174 0.00 0.00 42.18 3.35
2078 2609 1.742831 TCATTTTTGGAATCCGGCTCG 59.257 47.619 0.00 0.00 0.00 5.03
2126 2657 8.915057 ATATGCATCTTGAACTTACAATAGCT 57.085 30.769 0.19 0.00 0.00 3.32
2139 2670 6.151480 TGCTTGTCAAAGAATATGCATCTTGA 59.849 34.615 0.19 3.36 37.22 3.02
2152 2683 4.462394 AGCGCTGCTTGTCAAAGA 57.538 50.000 10.39 0.00 33.89 2.52
2204 2735 5.221422 CCTTACAAACCCAACATGTTGTCAT 60.221 40.000 31.20 16.78 38.85 3.06
2260 2791 6.446318 TGGTAGACATGTTTTCATTCAAAGC 58.554 36.000 0.00 0.00 38.64 3.51
2270 2801 6.524101 AAGTTGTGTTGGTAGACATGTTTT 57.476 33.333 0.00 0.00 0.00 2.43
2478 3009 9.556030 GGTATATTTGCAAGTAGAAAGTTGTTC 57.444 33.333 7.76 0.00 38.17 3.18
2539 3070 4.397417 GGTCTGATCCCTGTGAAATTTCAG 59.603 45.833 21.05 10.44 37.98 3.02
2541 3072 3.696548 GGGTCTGATCCCTGTGAAATTTC 59.303 47.826 11.41 11.41 43.85 2.17
2579 3110 3.668821 TGGTATGTCCCCATTCTGATCT 58.331 45.455 0.00 0.00 34.77 2.75
2642 3173 2.785269 TGGATTTAGCTGGATCCCATGT 59.215 45.455 20.98 0.00 40.92 3.21
2723 3254 3.648339 AAAAGCATACCAACAGCTGTG 57.352 42.857 22.49 11.68 38.86 3.66
2773 3304 1.133025 GAGACAATCAACATTGGGCCG 59.867 52.381 0.00 0.00 43.47 6.13
2776 3307 9.293404 AGATATAATGAGACAATCAACATTGGG 57.707 33.333 0.00 0.00 43.47 4.12
2921 3453 6.369065 ACATGTAAGCAAAGAACACTAGCTAC 59.631 38.462 0.00 0.00 34.66 3.58
3110 3644 1.985473 ACGGGTTTGGGTTAGGTTTC 58.015 50.000 0.00 0.00 0.00 2.78
3220 3754 7.733773 AGAAGGGAAAACAATATTTTAGGGG 57.266 36.000 0.00 0.00 0.00 4.79
3229 3763 6.493115 TGATGCTGAAAGAAGGGAAAACAATA 59.507 34.615 0.00 0.00 34.07 1.90
3373 3907 5.710513 TTAGCTGCATCAACAAAGACAAT 57.289 34.783 1.02 0.00 0.00 2.71
3407 3941 1.350684 TGGTAGCATCAGCAACAGGAA 59.649 47.619 0.00 0.00 45.49 3.36
3532 4066 5.452636 GCAAATGTTTGGAAGGAACAAGGTA 60.453 40.000 7.51 0.00 40.10 3.08
3535 4069 4.696455 AGCAAATGTTTGGAAGGAACAAG 58.304 39.130 7.51 0.00 40.10 3.16
3545 4079 4.389687 GGCAACAATAGAGCAAATGTTTGG 59.610 41.667 7.51 0.00 38.57 3.28
3552 4086 2.237643 TGCAGGCAACAATAGAGCAAA 58.762 42.857 0.00 0.00 41.41 3.68
3583 4117 0.886490 CACAGGCCAGTCTGGAACAC 60.886 60.000 23.77 8.92 40.96 3.32
3628 4162 4.053469 TGTGACGTCATCAAGTTCTCAA 57.947 40.909 23.12 0.00 39.72 3.02
3647 4181 6.038356 GCAGAATAAAATAGCTTGTGCATGT 58.962 36.000 0.00 0.00 42.74 3.21
3653 4187 7.756722 GTCAATGTGCAGAATAAAATAGCTTGT 59.243 33.333 0.00 0.00 0.00 3.16
3671 4205 3.665409 GCATGAAAACAGACGTCAATGTG 59.335 43.478 19.50 9.70 0.00 3.21
3680 4214 7.434897 TGAAATTACACAAGCATGAAAACAGAC 59.565 33.333 0.00 0.00 0.00 3.51
3900 4434 4.144297 ACAGCAACAATTAGGCAAGAAGA 58.856 39.130 0.00 0.00 0.00 2.87
3924 4458 5.955959 TCTCAGGTTTATTGCTAGGTGAGTA 59.044 40.000 0.00 0.00 33.44 2.59
3925 4459 4.777896 TCTCAGGTTTATTGCTAGGTGAGT 59.222 41.667 0.00 0.00 33.44 3.41
3954 4491 2.040278 AGCATAGGTCAAGTGCAGGAAA 59.960 45.455 0.00 0.00 41.19 3.13
3955 4492 1.630369 AGCATAGGTCAAGTGCAGGAA 59.370 47.619 0.00 0.00 41.19 3.36
4248 4786 5.026121 TGCTTAAGAAAGATCTCCCTGAGA 58.974 41.667 6.67 0.00 36.84 3.27
4325 4863 7.972277 TGAAAAAGAGAGTATAGCGATTAACGT 59.028 33.333 0.00 0.00 44.60 3.99
4326 4864 8.336498 TGAAAAAGAGAGTATAGCGATTAACG 57.664 34.615 0.00 0.00 45.66 3.18
4330 4868 9.606631 AGAAATGAAAAAGAGAGTATAGCGATT 57.393 29.630 0.00 0.00 0.00 3.34
4331 4869 9.255304 GAGAAATGAAAAAGAGAGTATAGCGAT 57.745 33.333 0.00 0.00 0.00 4.58
4332 4870 8.470805 AGAGAAATGAAAAAGAGAGTATAGCGA 58.529 33.333 0.00 0.00 0.00 4.93
4333 4871 8.641499 AGAGAAATGAAAAAGAGAGTATAGCG 57.359 34.615 0.00 0.00 0.00 4.26
4406 4944 2.505628 TACAGTCAACGTTTGCGGTA 57.494 45.000 0.00 2.97 43.45 4.02
4412 4950 9.575783 AAAATTGTATGTTTACAGTCAACGTTT 57.424 25.926 0.00 0.00 39.43 3.60
4468 5006 1.327764 GTTAATTCAGCGAGGAAGCGG 59.672 52.381 0.00 0.00 43.00 5.52
4535 5073 8.579863 ACTGGACAAATCAATAAAGAAAGAAGG 58.420 33.333 0.00 0.00 0.00 3.46
4588 5126 7.918643 AGCCAATATTTCCGCATTAAAAATTG 58.081 30.769 0.00 0.00 0.00 2.32
4600 5138 5.989168 TGTACATGAGTAGCCAATATTTCCG 59.011 40.000 0.00 0.00 0.00 4.30
4660 5198 5.013079 AGCATTAGCCACAGCCATATAGTAA 59.987 40.000 0.00 0.00 43.56 2.24
4661 5199 4.532126 AGCATTAGCCACAGCCATATAGTA 59.468 41.667 0.00 0.00 43.56 1.82
4662 5200 3.328931 AGCATTAGCCACAGCCATATAGT 59.671 43.478 0.00 0.00 43.56 2.12
4673 5211 5.869753 ATTCGATTATGAGCATTAGCCAC 57.130 39.130 0.00 0.00 43.56 5.01
4689 5227 8.316946 TCAGCCATCTGATAAAGATAATTCGAT 58.683 33.333 0.00 0.00 44.24 3.59
4719 5257 9.944376 TTCTTTCTCCCATAAATAGATATTCGG 57.056 33.333 0.00 0.00 0.00 4.30
4912 5451 3.134574 TGTTGCAGTCCGGTTTTAGAT 57.865 42.857 0.00 0.00 0.00 1.98
5126 5665 3.560068 CCTGTTCTAAGAAAACGTGCAGT 59.440 43.478 0.00 0.00 0.00 4.40
5166 5705 4.209452 ACGCAGACAAGTAACAAACATG 57.791 40.909 0.00 0.00 32.98 3.21
5169 5708 5.744490 ACATAACGCAGACAAGTAACAAAC 58.256 37.500 0.00 0.00 0.00 2.93
5359 5898 3.287222 TGATGGTTTTATACTGCAGGCC 58.713 45.455 19.93 0.00 0.00 5.19
5392 5932 9.249457 CTCTTAGTGGAAGAAATTTGGAAAAAC 57.751 33.333 0.00 0.00 43.75 2.43
5461 6002 5.573219 TGGAGAGAAATGTCATGAATGGTT 58.427 37.500 0.00 0.00 0.00 3.67
5478 6019 3.618351 AGAAACAATGATGGCTGGAGAG 58.382 45.455 0.00 0.00 0.00 3.20
5585 6126 4.307032 AACATTAGTCCATTGCTCAGGT 57.693 40.909 0.00 0.00 0.00 4.00
5681 6222 7.321717 AGTATTAACTGAGATATGGGCACAT 57.678 36.000 6.71 6.71 36.43 3.21
5703 6244 9.634163 CTTGGTGTTAGTTTTCAAGTTTTTAGT 57.366 29.630 0.00 0.00 32.59 2.24
5704 6245 9.849166 TCTTGGTGTTAGTTTTCAAGTTTTTAG 57.151 29.630 0.00 0.00 36.94 1.85
5719 6271 4.369182 ACGAAGTGTTCTCTTGGTGTTAG 58.631 43.478 0.00 0.00 42.51 2.34
5726 6278 3.181526 GCTGCATACGAAGTGTTCTCTTG 60.182 47.826 0.00 0.00 45.73 3.02
5727 6279 2.996621 GCTGCATACGAAGTGTTCTCTT 59.003 45.455 0.00 0.00 45.73 2.85
5732 6284 1.726791 CGAAGCTGCATACGAAGTGTT 59.273 47.619 1.02 0.00 45.73 3.32
5733 6285 1.336887 ACGAAGCTGCATACGAAGTGT 60.337 47.619 16.67 0.00 45.73 3.55
5734 6286 1.059692 CACGAAGCTGCATACGAAGTG 59.940 52.381 16.67 6.96 45.73 3.16
5737 6289 1.067846 AGTCACGAAGCTGCATACGAA 60.068 47.619 16.67 5.12 0.00 3.85
5739 6291 0.917259 GAGTCACGAAGCTGCATACG 59.083 55.000 1.02 6.99 0.00 3.06
5807 6361 3.181466 ACGTATACAAGATGCAGCATGGA 60.181 43.478 14.22 2.77 44.23 3.41
5812 6366 4.330074 ACAGAAACGTATACAAGATGCAGC 59.670 41.667 3.32 0.00 0.00 5.25
5828 6382 8.547894 ACTGTCAAAAAGTTCAAAAACAGAAAC 58.452 29.630 6.21 0.00 37.88 2.78
5830 6384 7.708752 ACACTGTCAAAAAGTTCAAAAACAGAA 59.291 29.630 6.21 0.00 37.88 3.02
5831 6385 7.206687 ACACTGTCAAAAAGTTCAAAAACAGA 58.793 30.769 6.21 0.00 37.88 3.41
5832 6386 7.406799 ACACTGTCAAAAAGTTCAAAAACAG 57.593 32.000 0.00 0.00 37.88 3.16
5833 6387 7.708752 AGAACACTGTCAAAAAGTTCAAAAACA 59.291 29.630 0.00 0.00 40.63 2.83
5834 6388 8.003784 CAGAACACTGTCAAAAAGTTCAAAAAC 58.996 33.333 0.00 0.00 40.63 2.43
5835 6389 7.307101 GCAGAACACTGTCAAAAAGTTCAAAAA 60.307 33.333 0.00 0.00 40.63 1.94
5837 6391 5.633182 GCAGAACACTGTCAAAAAGTTCAAA 59.367 36.000 0.00 0.00 40.63 2.69
5838 6392 5.160641 GCAGAACACTGTCAAAAAGTTCAA 58.839 37.500 0.00 0.00 40.63 2.69
5839 6393 4.217334 TGCAGAACACTGTCAAAAAGTTCA 59.783 37.500 0.00 0.00 40.63 3.18
5840 6394 4.732784 TGCAGAACACTGTCAAAAAGTTC 58.267 39.130 0.00 0.00 38.99 3.01
5843 6397 5.806502 TCAAATGCAGAACACTGTCAAAAAG 59.193 36.000 0.00 0.00 34.51 2.27
5846 6400 4.979943 TCAAATGCAGAACACTGTCAAA 57.020 36.364 0.00 0.00 34.51 2.69
5850 6404 5.518848 TCAATTCAAATGCAGAACACTGT 57.481 34.783 0.00 0.00 34.51 3.55
5852 6406 5.904941 TGTTCAATTCAAATGCAGAACACT 58.095 33.333 9.14 0.00 40.01 3.55
5854 6408 4.739228 CGTGTTCAATTCAAATGCAGAACA 59.261 37.500 9.14 9.14 41.88 3.18
5892 6545 0.254178 ATCGCCAGCCTGAAGACAAT 59.746 50.000 0.00 0.00 0.00 2.71
6134 6788 1.677820 GGGTTCCGGTGGTAGTCAATG 60.678 57.143 0.00 0.00 0.00 2.82
6188 6842 0.528470 GGTCGTCAGTTGAGAGGGAG 59.472 60.000 0.00 0.00 0.00 4.30
6191 6845 0.528470 GAGGGTCGTCAGTTGAGAGG 59.472 60.000 0.00 0.00 0.00 3.69
6210 6864 6.200854 GGTTCTTTTGTTAGGTGAATTTGCAG 59.799 38.462 0.00 0.00 0.00 4.41
6237 6891 4.516698 AGCAACACTGTATTCTTCAACCAG 59.483 41.667 0.00 0.00 0.00 4.00
6285 6939 4.081972 ACAGAACAGAGCACATAGTGGTAG 60.082 45.833 1.45 1.42 44.55 3.18
6286 6940 3.832490 ACAGAACAGAGCACATAGTGGTA 59.168 43.478 1.45 0.00 44.55 3.25
6306 6960 2.515398 CAGGTCCAAGTGGGCACA 59.485 61.111 3.99 0.00 42.93 4.57
6307 6961 2.985847 GCAGGTCCAAGTGGGCAC 60.986 66.667 3.99 0.00 42.93 5.01
6316 6970 3.432186 CGATCAAGAATTAGGCAGGTCCA 60.432 47.826 0.00 0.00 37.29 4.02
6341 6997 0.235665 CACAGCTGCCACAAGTAACG 59.764 55.000 15.27 0.00 0.00 3.18
6370 7026 4.455533 GCTATTTCACACAGGTCACATGAA 59.544 41.667 0.00 0.00 0.00 2.57
6373 7029 3.244875 TGGCTATTTCACACAGGTCACAT 60.245 43.478 0.00 0.00 0.00 3.21
6380 7036 4.946157 AGAATTCCTGGCTATTTCACACAG 59.054 41.667 0.65 0.00 0.00 3.66
6415 7071 3.452474 CTTCAGCCTATGAGAGAAACCG 58.548 50.000 0.00 0.00 39.68 4.44
6440 7096 4.021280 ACTGGCAAATGAATGTACAATGCA 60.021 37.500 0.00 0.00 37.94 3.96
6607 7270 3.424829 CGTTGTGTCGGAATTCAATCCTG 60.425 47.826 7.93 0.00 37.34 3.86
6679 7348 3.306641 GGCAATTATCAACCCAAGCACAA 60.307 43.478 0.00 0.00 0.00 3.33
6681 7350 2.497273 AGGCAATTATCAACCCAAGCAC 59.503 45.455 0.00 0.00 0.00 4.40
6682 7351 2.818921 AGGCAATTATCAACCCAAGCA 58.181 42.857 0.00 0.00 0.00 3.91
6683 7352 3.893326 AAGGCAATTATCAACCCAAGC 57.107 42.857 0.00 0.00 0.00 4.01
6684 7353 4.931002 CACAAAGGCAATTATCAACCCAAG 59.069 41.667 0.00 0.00 0.00 3.61
6685 7354 4.590647 TCACAAAGGCAATTATCAACCCAA 59.409 37.500 0.00 0.00 0.00 4.12
6687 7356 4.799564 TCACAAAGGCAATTATCAACCC 57.200 40.909 0.00 0.00 0.00 4.11
6701 7387 1.879380 TCTGCGGGTCAAATCACAAAG 59.121 47.619 0.00 0.00 0.00 2.77
6831 7523 2.989253 CCCAGAAAACGGGGTGCC 60.989 66.667 0.00 0.00 40.35 5.01
6853 7545 2.762535 TAGGTTTGCTTCCTTCTCCG 57.237 50.000 0.86 0.00 36.60 4.63
6967 7659 5.067936 CCTAGAGCGTCTTCTCCTTTTATCA 59.932 44.000 0.00 0.00 33.66 2.15
6971 7663 3.432378 TCCTAGAGCGTCTTCTCCTTTT 58.568 45.455 0.00 0.00 33.66 2.27
7083 7782 3.420300 TGCTGTAAAACATCCGGGTAA 57.580 42.857 0.00 0.00 0.00 2.85
7085 7784 2.091541 CATGCTGTAAAACATCCGGGT 58.908 47.619 0.00 0.00 0.00 5.28
7087 7786 3.848272 AACATGCTGTAAAACATCCGG 57.152 42.857 0.00 0.00 0.00 5.14
7088 7787 4.793071 TCAAACATGCTGTAAAACATCCG 58.207 39.130 0.00 0.00 0.00 4.18
7090 7789 7.307694 TCAGATCAAACATGCTGTAAAACATC 58.692 34.615 0.00 0.00 0.00 3.06
7093 7792 9.443283 GATATCAGATCAAACATGCTGTAAAAC 57.557 33.333 0.00 0.00 0.00 2.43
7119 7820 9.197694 CAGAAATAACCGGTGAATCTCTAATAG 57.802 37.037 8.52 0.00 0.00 1.73
7167 7880 5.894298 AGGGACTGCAACTTATGATATCA 57.106 39.130 8.10 8.10 37.18 2.15
7168 7881 7.390027 ACATAGGGACTGCAACTTATGATATC 58.610 38.462 16.51 0.00 41.52 1.63
7169 7882 7.321717 ACATAGGGACTGCAACTTATGATAT 57.678 36.000 16.51 0.00 41.52 1.63
7173 7886 4.130118 GGACATAGGGACTGCAACTTATG 58.870 47.826 11.05 11.05 41.52 1.90
7177 7890 0.912486 GGGACATAGGGACTGCAACT 59.088 55.000 0.00 0.00 41.52 3.16
7178 7891 0.618458 TGGGACATAGGGACTGCAAC 59.382 55.000 0.00 0.00 41.52 4.17
7179 7892 0.618458 GTGGGACATAGGGACTGCAA 59.382 55.000 0.00 0.00 44.52 4.08
7181 7894 0.618458 TTGTGGGACATAGGGACTGC 59.382 55.000 0.00 0.00 44.52 4.40
7182 7895 4.982241 ATATTGTGGGACATAGGGACTG 57.018 45.455 0.00 0.00 44.52 3.51
7183 7896 6.390504 TCTTATATTGTGGGACATAGGGACT 58.609 40.000 0.00 0.00 44.52 3.85
7184 7897 6.681729 TCTTATATTGTGGGACATAGGGAC 57.318 41.667 0.00 0.00 44.52 4.46
7191 7904 9.337396 GTGTGAAATATCTTATATTGTGGGACA 57.663 33.333 0.00 0.00 0.00 4.02
7202 7915 9.793252 GCTCAAAACATGTGTGAAATATCTTAT 57.207 29.630 12.25 0.00 0.00 1.73
7203 7916 8.791675 TGCTCAAAACATGTGTGAAATATCTTA 58.208 29.630 12.25 0.00 0.00 2.10
7204 7917 7.660112 TGCTCAAAACATGTGTGAAATATCTT 58.340 30.769 12.25 0.00 0.00 2.40
7205 7918 7.175467 TCTGCTCAAAACATGTGTGAAATATCT 59.825 33.333 12.25 0.00 0.00 1.98
7206 7919 7.307694 TCTGCTCAAAACATGTGTGAAATATC 58.692 34.615 12.25 3.04 0.00 1.63
7207 7920 7.218228 TCTGCTCAAAACATGTGTGAAATAT 57.782 32.000 12.25 0.00 0.00 1.28
7208 7921 6.631971 TCTGCTCAAAACATGTGTGAAATA 57.368 33.333 12.25 3.38 0.00 1.40
7209 7922 5.518848 TCTGCTCAAAACATGTGTGAAAT 57.481 34.783 12.25 0.00 0.00 2.17
7210 7923 4.979943 TCTGCTCAAAACATGTGTGAAA 57.020 36.364 12.25 4.95 0.00 2.69
7211 7924 6.822667 ATATCTGCTCAAAACATGTGTGAA 57.177 33.333 12.25 0.69 0.00 3.18
7212 7925 6.822667 AATATCTGCTCAAAACATGTGTGA 57.177 33.333 0.00 5.69 0.00 3.58
7213 7926 7.695201 CACTAATATCTGCTCAAAACATGTGTG 59.305 37.037 0.00 0.66 0.00 3.82
7214 7927 7.391554 ACACTAATATCTGCTCAAAACATGTGT 59.608 33.333 0.00 0.00 0.00 3.72
7215 7928 7.755591 ACACTAATATCTGCTCAAAACATGTG 58.244 34.615 0.00 0.00 0.00 3.21
7216 7929 7.928307 ACACTAATATCTGCTCAAAACATGT 57.072 32.000 0.00 0.00 0.00 3.21
7217 7930 9.874215 CATACACTAATATCTGCTCAAAACATG 57.126 33.333 0.00 0.00 0.00 3.21
7218 7931 9.618890 ACATACACTAATATCTGCTCAAAACAT 57.381 29.630 0.00 0.00 0.00 2.71
7219 7932 9.448438 AACATACACTAATATCTGCTCAAAACA 57.552 29.630 0.00 0.00 0.00 2.83
7227 7940 7.516785 CGACACCAAACATACACTAATATCTGC 60.517 40.741 0.00 0.00 0.00 4.26
7228 7941 7.042725 CCGACACCAAACATACACTAATATCTG 60.043 40.741 0.00 0.00 0.00 2.90
7259 7996 1.130955 CACATGCGCAGAAAACAACC 58.869 50.000 18.32 0.00 0.00 3.77
7312 8052 3.174788 CGGCTTTACGCTCCCAAC 58.825 61.111 0.00 0.00 39.13 3.77
7387 8128 3.136123 CAGCTTGCATCACCCCGG 61.136 66.667 0.00 0.00 0.00 5.73
7388 8129 3.136123 CCAGCTTGCATCACCCCG 61.136 66.667 0.00 0.00 0.00 5.73
7409 8150 1.186200 TGTGAGTTCTCGGATGGGAG 58.814 55.000 0.00 0.00 35.32 4.30
7434 8176 2.037641 CCACTGGCACTAGCATAGCATA 59.962 50.000 0.00 0.00 44.39 3.14
7435 8177 1.202734 CCACTGGCACTAGCATAGCAT 60.203 52.381 0.00 0.00 44.39 3.79
7436 8178 0.178767 CCACTGGCACTAGCATAGCA 59.821 55.000 0.00 0.00 44.39 3.49
7437 8179 0.179000 ACCACTGGCACTAGCATAGC 59.821 55.000 0.00 0.00 44.39 2.97
7438 8180 1.473965 CCACCACTGGCACTAGCATAG 60.474 57.143 0.00 0.00 46.50 2.23
7439 8181 0.541392 CCACCACTGGCACTAGCATA 59.459 55.000 0.00 0.00 44.61 3.14
7440 8182 1.300963 CCACCACTGGCACTAGCAT 59.699 57.895 0.00 0.00 44.61 3.79
7441 8183 2.749682 CCACCACTGGCACTAGCA 59.250 61.111 0.00 0.00 44.61 3.49
7492 8270 3.340034 AGTTTTGTTCGAGACACCAACA 58.660 40.909 16.03 3.43 38.18 3.33
7514 8292 3.728864 GCAACATCAGCGTACTTCCATTG 60.729 47.826 0.00 0.00 0.00 2.82
7527 8305 0.098200 CGTCATGGCTGCAACATCAG 59.902 55.000 0.50 0.00 37.15 2.90
7554 8332 9.615295 TCATGAATATACGCAATCATCATTTTG 57.385 29.630 0.00 0.00 30.39 2.44
7594 8398 0.319555 TGAAGTCAGTTTCTCCGGCG 60.320 55.000 0.00 0.00 0.00 6.46
7595 8399 1.149148 GTGAAGTCAGTTTCTCCGGC 58.851 55.000 0.00 0.00 0.00 6.13
7596 8400 1.269621 ACGTGAAGTCAGTTTCTCCGG 60.270 52.381 0.00 0.00 31.26 5.14
7597 8401 2.135664 ACGTGAAGTCAGTTTCTCCG 57.864 50.000 0.00 0.00 0.00 4.63
7627 8432 3.214328 TCAAGAAACCAGAGGAAGCAAC 58.786 45.455 0.00 0.00 0.00 4.17
7653 8458 9.121658 GATTATTCCTAGGGAAAAAGGTAGTTG 57.878 37.037 9.46 0.00 45.41 3.16
7654 8459 8.842764 TGATTATTCCTAGGGAAAAAGGTAGTT 58.157 33.333 9.46 0.00 45.41 2.24
7655 8460 8.401955 TGATTATTCCTAGGGAAAAAGGTAGT 57.598 34.615 9.46 0.00 45.41 2.73
7666 8471 5.006386 GTGGCTCAATGATTATTCCTAGGG 58.994 45.833 9.46 0.00 0.00 3.53
7693 8498 6.089417 GCCATTATTCCTGTTCTTGTTTTTCG 59.911 38.462 0.00 0.00 0.00 3.46
7717 8522 4.756502 CTCTGGTTAACTAGTAGTTGGGC 58.243 47.826 23.14 13.23 39.11 5.36
7732 8537 0.037303 CATGGACCACTGCTCTGGTT 59.963 55.000 0.00 0.00 45.15 3.67
7734 8539 0.037303 AACATGGACCACTGCTCTGG 59.963 55.000 0.00 0.00 37.33 3.86
7751 8556 5.532779 GGATGATGAAGGGTGAAATAGGAAC 59.467 44.000 0.00 0.00 0.00 3.62
7757 8562 3.294214 GCAGGATGATGAAGGGTGAAAT 58.706 45.455 0.00 0.00 39.69 2.17
7765 8570 1.211212 TGGAGTGGCAGGATGATGAAG 59.789 52.381 0.00 0.00 39.69 3.02
7775 8580 3.317711 TGTGTTTTTGTATGGAGTGGCAG 59.682 43.478 0.00 0.00 0.00 4.85
7787 8598 3.608796 AGGCTTGCAAATGTGTTTTTGT 58.391 36.364 0.00 0.00 38.55 2.83
7792 8603 2.159114 ACGAAAGGCTTGCAAATGTGTT 60.159 40.909 5.96 0.00 0.00 3.32
7819 8631 8.451908 AGCTGTGAGTAAGTAATTCTTTTGTT 57.548 30.769 0.00 0.00 37.56 2.83
7848 8660 8.006298 TCTTTGTGTAATCAACCAATCTGTTT 57.994 30.769 0.00 0.00 0.00 2.83
7896 8712 7.172190 TGTGCTCTACTCATCTTCTTCTTTTTG 59.828 37.037 0.00 0.00 0.00 2.44
7905 8721 6.202516 AGTAGTTGTGCTCTACTCATCTTC 57.797 41.667 6.15 0.00 42.74 2.87
7911 8738 6.919115 GCCTAATTAGTAGTTGTGCTCTACTC 59.081 42.308 11.50 0.27 44.39 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.