Multiple sequence alignment - TraesCS2B01G101000
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS2B01G101000
chr2B
100.000
2816
0
0
1
2816
61469467
61466652
0.000000e+00
5201.0
1
TraesCS2B01G101000
chr2A
92.159
2283
147
11
1
2281
233956112
233958364
0.000000e+00
3195.0
2
TraesCS2B01G101000
chr2A
90.294
1257
92
12
1492
2738
233958368
233959604
0.000000e+00
1618.0
3
TraesCS2B01G101000
chr2A
86.721
1235
132
18
463
1684
713921581
713920366
0.000000e+00
1343.0
4
TraesCS2B01G101000
chr2A
85.874
446
57
6
1
444
713921993
713921552
1.180000e-128
470.0
5
TraesCS2B01G101000
chr2A
88.024
167
18
2
2573
2738
233942524
233942359
2.210000e-46
196.0
6
TraesCS2B01G101000
chrUn
89.763
2276
119
36
489
2738
79946865
79949052
0.000000e+00
2808.0
7
TraesCS2B01G101000
chrUn
91.485
1515
77
23
319
1803
79946670
79948162
0.000000e+00
2036.0
8
TraesCS2B01G101000
chr5A
91.210
967
78
2
1006
1972
519654567
519655526
0.000000e+00
1308.0
9
TraesCS2B01G101000
chr5A
90.772
596
39
5
1
592
519640842
519641425
0.000000e+00
782.0
10
TraesCS2B01G101000
chr5A
86.154
650
65
13
2106
2740
519655529
519656168
0.000000e+00
678.0
11
TraesCS2B01G101000
chr5A
88.406
276
23
4
743
1015
519645146
519645415
9.730000e-85
324.0
12
TraesCS2B01G101000
chr5A
88.024
167
18
2
2573
2738
519564693
519564528
2.210000e-46
196.0
13
TraesCS2B01G101000
chr5A
95.763
118
5
0
630
747
519644697
519644814
1.030000e-44
191.0
14
TraesCS2B01G101000
chr5A
97.727
44
1
0
588
631
519643087
519643130
3.010000e-10
76.8
15
TraesCS2B01G101000
chr1B
82.712
1099
135
25
1005
2087
395241812
395240753
0.000000e+00
926.0
16
TraesCS2B01G101000
chr7B
82.455
1100
138
25
1005
2087
501595896
501594835
0.000000e+00
911.0
17
TraesCS2B01G101000
chr4B
81.495
1097
131
31
1005
2087
168717408
168716370
0.000000e+00
835.0
18
TraesCS2B01G101000
chr2D
77.715
534
64
22
1569
2087
640719530
640720023
2.760000e-70
276.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS2B01G101000
chr2B
61466652
61469467
2815
True
5201.00
5201
100.0000
1
2816
1
chr2B.!!$R1
2815
1
TraesCS2B01G101000
chr2A
233956112
233959604
3492
False
2406.50
3195
91.2265
1
2738
2
chr2A.!!$F1
2737
2
TraesCS2B01G101000
chr2A
713920366
713921993
1627
True
906.50
1343
86.2975
1
1684
2
chr2A.!!$R2
1683
3
TraesCS2B01G101000
chrUn
79946670
79949052
2382
False
2422.00
2808
90.6240
319
2738
2
chrUn.!!$F1
2419
4
TraesCS2B01G101000
chr5A
519654567
519656168
1601
False
993.00
1308
88.6820
1006
2740
2
chr5A.!!$F2
1734
5
TraesCS2B01G101000
chr5A
519640842
519645415
4573
False
343.45
782
93.1670
1
1015
4
chr5A.!!$F1
1014
6
TraesCS2B01G101000
chr1B
395240753
395241812
1059
True
926.00
926
82.7120
1005
2087
1
chr1B.!!$R1
1082
7
TraesCS2B01G101000
chr7B
501594835
501595896
1061
True
911.00
911
82.4550
1005
2087
1
chr7B.!!$R1
1082
8
TraesCS2B01G101000
chr4B
168716370
168717408
1038
True
835.00
835
81.4950
1005
2087
1
chr4B.!!$R1
1082
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
844
4448
0.106918
TGCAAAAAGTGGGTCGGAGT
60.107
50.0
0.0
0.0
0.0
3.85
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2784
7295
0.029267
AGGCCCCTCCTCTCATCAAT
60.029
55.0
0.0
0.0
43.2
2.57
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
109
110
1.830477
TGCAGTGCAAAAGGTTTTCCT
59.170
42.857
17.26
0.00
44.21
3.36
173
174
3.608316
TTCCACAAATTGCATAAGGGC
57.392
42.857
0.00
0.00
0.00
5.19
177
178
2.423185
CACAAATTGCATAAGGGCGAGA
59.577
45.455
0.00
0.00
36.28
4.04
201
202
4.219288
AGTTGAAGAATGATCTTTGGGCAC
59.781
41.667
0.00
0.00
45.91
5.01
246
247
7.671398
AGATTGAATACCAGAAAAACATGGACT
59.329
33.333
0.00
0.00
39.02
3.85
350
353
5.431731
ACCCATTCCCAAAGTGTGATATCTA
59.568
40.000
3.98
0.00
0.00
1.98
398
405
4.322057
ACAGGTTAGCTTCCAATCCATT
57.678
40.909
9.72
0.00
0.00
3.16
503
510
1.167851
AAACCATGCCATGACACTCG
58.832
50.000
6.18
0.00
0.00
4.18
548
581
7.425606
AGTACTTCAAAAACATTCCATGACAC
58.574
34.615
0.00
0.00
0.00
3.67
563
596
3.433306
TGACACCCCACTCTTAATTGG
57.567
47.619
0.00
0.00
0.00
3.16
677
3944
4.414337
AGAATCAGATAAGTGGACTGGC
57.586
45.455
0.00
0.00
33.19
4.85
749
4352
4.337555
GCTGCTCATTGTATGGTTCAAGAT
59.662
41.667
0.00
0.00
0.00
2.40
771
4374
2.303311
GCTGGTAGAGGAGTTTTCCAGT
59.697
50.000
10.08
0.00
46.64
4.00
838
4442
3.642848
AGATGTGAATGCAAAAAGTGGGT
59.357
39.130
0.00
0.00
0.00
4.51
840
4444
2.223688
TGTGAATGCAAAAAGTGGGTCG
60.224
45.455
0.00
0.00
0.00
4.79
841
4445
1.339610
TGAATGCAAAAAGTGGGTCGG
59.660
47.619
0.00
0.00
0.00
4.79
842
4446
1.611491
GAATGCAAAAAGTGGGTCGGA
59.389
47.619
0.00
0.00
0.00
4.55
843
4447
1.247567
ATGCAAAAAGTGGGTCGGAG
58.752
50.000
0.00
0.00
0.00
4.63
844
4448
0.106918
TGCAAAAAGTGGGTCGGAGT
60.107
50.000
0.00
0.00
0.00
3.85
846
4450
1.407618
GCAAAAAGTGGGTCGGAGTTT
59.592
47.619
0.00
0.00
0.00
2.66
847
4451
2.159156
GCAAAAAGTGGGTCGGAGTTTT
60.159
45.455
0.00
0.00
0.00
2.43
848
4452
3.702330
CAAAAAGTGGGTCGGAGTTTTC
58.298
45.455
0.00
0.00
0.00
2.29
881
4487
3.625764
GCCATCATTCCGTAGCTTGTTTA
59.374
43.478
0.00
0.00
0.00
2.01
996
4602
3.126453
AGGGACAAAGCTAGATGGGAAT
58.874
45.455
0.00
0.00
0.00
3.01
1017
4623
9.073475
GGGAATAAAATGTATGGCACTATTGTA
57.927
33.333
0.00
0.00
0.00
2.41
1116
4722
2.009774
CATGGAGGGTTGAAGCTTACG
58.990
52.381
0.00
0.00
0.00
3.18
1185
4791
7.067496
TCATAACAAAAAGGGCCATTACAAA
57.933
32.000
1.49
0.00
0.00
2.83
1188
4794
4.447290
ACAAAAAGGGCCATTACAAACAC
58.553
39.130
1.49
0.00
0.00
3.32
1199
4805
5.382303
CCATTACAAACACGAGAATGTCAC
58.618
41.667
0.00
0.00
30.55
3.67
1213
4819
6.073058
CGAGAATGTCACTCCAAATGAAGAAA
60.073
38.462
0.00
0.00
0.00
2.52
1392
5009
3.330267
CAACTCAAACTCCTGGCTCTAC
58.670
50.000
0.00
0.00
0.00
2.59
1414
5031
5.957798
ACGATTTTCATGATGCAAGAACAT
58.042
33.333
0.00
0.00
0.00
2.71
1600
6007
2.074576
CATCTGCCAGAGTGACAACAG
58.925
52.381
0.00
0.00
0.00
3.16
1601
6008
0.250038
TCTGCCAGAGTGACAACAGC
60.250
55.000
0.00
0.00
0.00
4.40
1602
6009
0.250209
CTGCCAGAGTGACAACAGCT
60.250
55.000
0.00
0.00
0.00
4.24
1603
6010
1.001293
CTGCCAGAGTGACAACAGCTA
59.999
52.381
0.00
0.00
0.00
3.32
1604
6011
1.416030
TGCCAGAGTGACAACAGCTAA
59.584
47.619
0.00
0.00
0.00
3.09
1605
6012
1.801178
GCCAGAGTGACAACAGCTAAC
59.199
52.381
0.00
0.00
0.00
2.34
1606
6013
2.806745
GCCAGAGTGACAACAGCTAACA
60.807
50.000
0.00
0.00
0.00
2.41
1688
6102
4.106925
GAGGAGGGGCTGGTGCTG
62.107
72.222
0.00
0.00
39.59
4.41
1696
6110
4.025858
GCTGGTGCTGGCAGAGGA
62.026
66.667
20.86
0.00
36.03
3.71
1697
6111
2.752358
CTGGTGCTGGCAGAGGAA
59.248
61.111
20.86
0.00
0.00
3.36
1698
6112
1.673665
CTGGTGCTGGCAGAGGAAC
60.674
63.158
20.86
9.91
0.00
3.62
1699
6113
2.401699
CTGGTGCTGGCAGAGGAACA
62.402
60.000
20.86
8.90
37.39
3.18
1700
6114
1.228245
GGTGCTGGCAGAGGAACAA
60.228
57.895
20.86
0.00
27.77
2.83
1701
6115
1.239968
GGTGCTGGCAGAGGAACAAG
61.240
60.000
20.86
0.00
27.77
3.16
1702
6116
0.250467
GTGCTGGCAGAGGAACAAGA
60.250
55.000
20.86
0.00
0.00
3.02
1703
6117
0.035881
TGCTGGCAGAGGAACAAGAG
59.964
55.000
20.86
0.00
0.00
2.85
1704
6118
0.676151
GCTGGCAGAGGAACAAGAGG
60.676
60.000
20.86
0.00
0.00
3.69
1705
6119
0.979665
CTGGCAGAGGAACAAGAGGA
59.020
55.000
9.42
0.00
0.00
3.71
1706
6120
0.979665
TGGCAGAGGAACAAGAGGAG
59.020
55.000
0.00
0.00
0.00
3.69
1707
6121
0.251634
GGCAGAGGAACAAGAGGAGG
59.748
60.000
0.00
0.00
0.00
4.30
1708
6122
0.251634
GCAGAGGAACAAGAGGAGGG
59.748
60.000
0.00
0.00
0.00
4.30
1709
6123
1.650528
CAGAGGAACAAGAGGAGGGT
58.349
55.000
0.00
0.00
0.00
4.34
1710
6124
1.552792
CAGAGGAACAAGAGGAGGGTC
59.447
57.143
0.00
0.00
0.00
4.46
1711
6125
1.435168
AGAGGAACAAGAGGAGGGTCT
59.565
52.381
0.00
0.00
0.00
3.85
1712
6126
1.552792
GAGGAACAAGAGGAGGGTCTG
59.447
57.143
0.00
0.00
0.00
3.51
1713
6127
0.615850
GGAACAAGAGGAGGGTCTGG
59.384
60.000
0.00
0.00
0.00
3.86
1714
6128
1.353091
GAACAAGAGGAGGGTCTGGT
58.647
55.000
0.00
0.00
31.45
4.00
1715
6129
1.002544
GAACAAGAGGAGGGTCTGGTG
59.997
57.143
0.00
0.00
30.54
4.17
1716
6130
1.298014
CAAGAGGAGGGTCTGGTGC
59.702
63.158
0.00
0.00
0.00
5.01
1717
6131
1.159664
AAGAGGAGGGTCTGGTGCT
59.840
57.895
0.00
0.00
0.00
4.40
1741
6185
2.239654
CAGAGGAACAATAAGAGGGGCA
59.760
50.000
0.00
0.00
0.00
5.36
1760
6204
0.196118
AGGGAGGGGAACAAGAGGAA
59.804
55.000
0.00
0.00
0.00
3.36
1765
6209
0.609406
GGGGAACAAGAGGAAGTGCC
60.609
60.000
0.00
0.00
32.25
5.01
1799
6249
2.169832
TGCAACTGCTACAAGAGGAC
57.830
50.000
2.95
0.00
42.66
3.85
1811
6261
4.961438
ACAAGAGGACCAAATGCAAATT
57.039
36.364
0.00
0.00
0.00
1.82
1824
6307
6.376581
CCAAATGCAAATTCTAGAAGAGGAGT
59.623
38.462
11.53
1.21
0.00
3.85
1862
6345
2.571653
ACAAGAGCAGGTGCCACTAATA
59.428
45.455
0.00
0.00
43.38
0.98
1870
6353
3.322254
CAGGTGCCACTAATACTAGAGGG
59.678
52.174
0.00
0.00
36.63
4.30
1883
6366
1.200760
TAGAGGGGCAAGAGCAGCAA
61.201
55.000
0.00
0.00
44.61
3.91
1890
6373
0.888285
GCAAGAGCAGCAACTCCTGT
60.888
55.000
0.00
0.00
41.58
4.00
1928
6412
6.547141
CCTTTTTGGAGATGACATGGCTAATA
59.453
38.462
0.00
0.00
38.35
0.98
2120
6605
6.184789
TGTAATACATTTCTGAACCTTCCCC
58.815
40.000
0.00
0.00
0.00
4.81
2141
6626
3.632145
CCTTTGTGCTACTGAACCTTGTT
59.368
43.478
0.00
0.00
0.00
2.83
2211
6707
6.301486
TGCTATGTATGATGCAATCTTCCTT
58.699
36.000
0.00
0.00
45.81
3.36
2338
6839
1.209261
TGTTCTTCTGGCAGTGTGACA
59.791
47.619
15.27
12.45
32.24
3.58
2362
6863
7.117812
ACACACTATATGTAGTTCTGCAACAAC
59.882
37.037
0.00
0.69
40.64
3.32
2392
6895
5.777732
ACTGATGTAAAATTTGGTTGGCCTA
59.222
36.000
3.32
0.00
35.27
3.93
2415
6918
2.374170
GGTTTGAACCCAAGACCTAGGA
59.626
50.000
17.98
0.00
43.43
2.94
2461
6964
4.026744
AGTGAGCTAGCACCAGATTTCTA
58.973
43.478
18.83
0.00
39.59
2.10
2466
6969
7.659390
GTGAGCTAGCACCAGATTTCTAATATT
59.341
37.037
18.83
0.00
32.68
1.28
2500
7005
4.440826
AGCTACTAGTAGAAGCCTGCTA
57.559
45.455
30.09
0.00
36.70
3.49
2525
7030
0.167251
CCGCCGTTTCACGCTTTTAT
59.833
50.000
0.00
0.00
40.91
1.40
2545
7050
3.844577
TCCTGCGACTAGTACAAAGTC
57.155
47.619
15.07
15.07
40.01
3.01
2654
7164
2.284401
CGTGCTCGCAAAAACAAGTTTG
60.284
45.455
0.00
0.00
40.72
2.93
2655
7165
2.920490
GTGCTCGCAAAAACAAGTTTGA
59.080
40.909
0.00
0.00
40.29
2.69
2719
7230
6.828273
TGCACATCCTAAGCAACTTTATGTAT
59.172
34.615
0.00
0.00
34.97
2.29
2724
7235
7.195374
TCCTAAGCAACTTTATGTATCACCT
57.805
36.000
0.00
0.00
0.00
4.00
2725
7236
8.313944
TCCTAAGCAACTTTATGTATCACCTA
57.686
34.615
0.00
0.00
0.00
3.08
2740
7251
6.936335
TGTATCACCTATGCATTTACCTCATG
59.064
38.462
3.54
0.00
0.00
3.07
2741
7252
5.372343
TCACCTATGCATTTACCTCATGT
57.628
39.130
3.54
0.00
0.00
3.21
2742
7253
6.493189
TCACCTATGCATTTACCTCATGTA
57.507
37.500
3.54
0.00
0.00
2.29
2743
7254
6.524734
TCACCTATGCATTTACCTCATGTAG
58.475
40.000
3.54
0.00
0.00
2.74
2760
7271
8.209917
CTCATGTAGGTTTATGAGGGTTTTAC
57.790
38.462
0.00
0.00
44.06
2.01
2761
7272
7.691213
TCATGTAGGTTTATGAGGGTTTTACA
58.309
34.615
0.00
0.00
0.00
2.41
2762
7273
7.827236
TCATGTAGGTTTATGAGGGTTTTACAG
59.173
37.037
0.00
0.00
0.00
2.74
2763
7274
6.478129
TGTAGGTTTATGAGGGTTTTACAGG
58.522
40.000
0.00
0.00
0.00
4.00
2764
7275
4.341487
AGGTTTATGAGGGTTTTACAGGC
58.659
43.478
0.00
0.00
0.00
4.85
2765
7276
4.083565
GGTTTATGAGGGTTTTACAGGCA
58.916
43.478
0.00
0.00
0.00
4.75
2766
7277
4.157840
GGTTTATGAGGGTTTTACAGGCAG
59.842
45.833
0.00
0.00
0.00
4.85
2767
7278
2.514458
ATGAGGGTTTTACAGGCAGG
57.486
50.000
0.00
0.00
0.00
4.85
2768
7279
1.145571
TGAGGGTTTTACAGGCAGGT
58.854
50.000
0.00
0.00
0.00
4.00
2769
7280
1.202879
TGAGGGTTTTACAGGCAGGTG
60.203
52.381
0.00
0.00
0.00
4.00
2770
7281
1.073284
GAGGGTTTTACAGGCAGGTGA
59.927
52.381
0.00
0.00
0.00
4.02
2771
7282
1.497286
AGGGTTTTACAGGCAGGTGAA
59.503
47.619
0.00
0.00
0.00
3.18
2772
7283
2.110011
AGGGTTTTACAGGCAGGTGAAT
59.890
45.455
0.00
0.00
0.00
2.57
2773
7284
2.897326
GGGTTTTACAGGCAGGTGAATT
59.103
45.455
0.00
0.00
0.00
2.17
2774
7285
3.323691
GGGTTTTACAGGCAGGTGAATTT
59.676
43.478
0.00
0.00
0.00
1.82
2775
7286
4.202315
GGGTTTTACAGGCAGGTGAATTTT
60.202
41.667
0.00
0.00
0.00
1.82
2776
7287
4.749598
GGTTTTACAGGCAGGTGAATTTTG
59.250
41.667
0.00
0.00
0.00
2.44
2777
7288
5.452636
GGTTTTACAGGCAGGTGAATTTTGA
60.453
40.000
0.00
0.00
0.00
2.69
2778
7289
6.223120
GTTTTACAGGCAGGTGAATTTTGAT
58.777
36.000
0.00
0.00
0.00
2.57
2779
7290
6.418057
TTTACAGGCAGGTGAATTTTGATT
57.582
33.333
0.00
0.00
0.00
2.57
2780
7291
4.261578
ACAGGCAGGTGAATTTTGATTG
57.738
40.909
0.00
0.00
0.00
2.67
2781
7292
3.896888
ACAGGCAGGTGAATTTTGATTGA
59.103
39.130
0.00
0.00
0.00
2.57
2782
7293
4.344679
ACAGGCAGGTGAATTTTGATTGAA
59.655
37.500
0.00
0.00
0.00
2.69
2783
7294
4.927425
CAGGCAGGTGAATTTTGATTGAAG
59.073
41.667
0.00
0.00
0.00
3.02
2784
7295
4.834496
AGGCAGGTGAATTTTGATTGAAGA
59.166
37.500
0.00
0.00
0.00
2.87
2785
7296
5.482878
AGGCAGGTGAATTTTGATTGAAGAT
59.517
36.000
0.00
0.00
0.00
2.40
2786
7297
6.013984
AGGCAGGTGAATTTTGATTGAAGATT
60.014
34.615
0.00
0.00
0.00
2.40
2787
7298
6.091713
GGCAGGTGAATTTTGATTGAAGATTG
59.908
38.462
0.00
0.00
0.00
2.67
2788
7299
6.869913
GCAGGTGAATTTTGATTGAAGATTGA
59.130
34.615
0.00
0.00
0.00
2.57
2789
7300
7.548075
GCAGGTGAATTTTGATTGAAGATTGAT
59.452
33.333
0.00
0.00
0.00
2.57
2790
7301
8.869897
CAGGTGAATTTTGATTGAAGATTGATG
58.130
33.333
0.00
0.00
0.00
3.07
2791
7302
8.809066
AGGTGAATTTTGATTGAAGATTGATGA
58.191
29.630
0.00
0.00
0.00
2.92
2792
7303
9.084164
GGTGAATTTTGATTGAAGATTGATGAG
57.916
33.333
0.00
0.00
0.00
2.90
2793
7304
9.850628
GTGAATTTTGATTGAAGATTGATGAGA
57.149
29.630
0.00
0.00
0.00
3.27
2795
7306
9.517609
GAATTTTGATTGAAGATTGATGAGAGG
57.482
33.333
0.00
0.00
0.00
3.69
2796
7307
8.818622
ATTTTGATTGAAGATTGATGAGAGGA
57.181
30.769
0.00
0.00
0.00
3.71
2797
7308
7.860918
TTTGATTGAAGATTGATGAGAGGAG
57.139
36.000
0.00
0.00
0.00
3.69
2798
7309
5.926663
TGATTGAAGATTGATGAGAGGAGG
58.073
41.667
0.00
0.00
0.00
4.30
2799
7310
4.767578
TTGAAGATTGATGAGAGGAGGG
57.232
45.455
0.00
0.00
0.00
4.30
2800
7311
3.044156
TGAAGATTGATGAGAGGAGGGG
58.956
50.000
0.00
0.00
0.00
4.79
2801
7312
1.433121
AGATTGATGAGAGGAGGGGC
58.567
55.000
0.00
0.00
0.00
5.80
2802
7313
0.399833
GATTGATGAGAGGAGGGGCC
59.600
60.000
0.00
0.00
0.00
5.80
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
150
151
5.669477
GCCCTTATGCAATTTGTGGAAATA
58.331
37.500
0.00
0.00
31.18
1.40
173
174
6.402983
CCCAAAGATCATTCTTCAACTTCTCG
60.403
42.308
0.00
0.00
41.42
4.04
177
178
4.834496
TGCCCAAAGATCATTCTTCAACTT
59.166
37.500
0.00
0.00
41.42
2.66
201
202
5.578005
ATCTCATTTGTGGATCTTGCAAG
57.422
39.130
20.81
20.81
0.00
4.01
246
247
2.301870
CCTGACTGTGTGCCCTTAACTA
59.698
50.000
0.00
0.00
0.00
2.24
535
568
1.004745
GAGTGGGGTGTCATGGAATGT
59.995
52.381
0.00
0.00
46.80
2.71
563
596
8.371699
AGTTCTCTTGCCTCCAATATATAACTC
58.628
37.037
0.00
0.00
0.00
3.01
677
3944
1.280133
TGGATCTTTGGGCAGAGTCTG
59.720
52.381
16.21
16.21
34.12
3.51
749
4352
2.303022
CTGGAAAACTCCTCTACCAGCA
59.697
50.000
0.00
0.00
38.40
4.41
771
4374
9.258826
CAAATAAATGTTGTTGAAGGATGTCAA
57.741
29.630
0.00
0.00
35.14
3.18
818
4421
3.552684
CGACCCACTTTTTGCATTCACAT
60.553
43.478
0.00
0.00
0.00
3.21
838
4442
1.078708
GGGATGCCGAAAACTCCGA
60.079
57.895
0.00
0.00
0.00
4.55
840
4444
0.740737
CATGGGATGCCGAAAACTCC
59.259
55.000
0.00
0.00
0.00
3.85
881
4487
7.587037
TTCTGGTTCAATTCTTTCATGTCTT
57.413
32.000
0.00
0.00
0.00
3.01
1017
4623
5.801380
ACTTTCGTGTACAAAGGTGGATAT
58.199
37.500
9.90
0.00
35.49
1.63
1116
4722
3.194116
AGTGCATTGTGGATCCATGTTTC
59.806
43.478
19.62
4.90
0.00
2.78
1158
4764
6.667414
TGTAATGGCCCTTTTTGTTATGATCT
59.333
34.615
0.00
0.00
0.00
2.75
1185
4791
3.469008
TTTGGAGTGACATTCTCGTGT
57.531
42.857
0.00
0.00
33.26
4.49
1188
4794
4.931601
TCTTCATTTGGAGTGACATTCTCG
59.068
41.667
0.00
0.00
33.26
4.04
1199
4805
6.127814
TGCTTGAGCTATTTCTTCATTTGGAG
60.128
38.462
4.44
0.00
42.66
3.86
1213
4819
7.733969
TCATAATCTTCTTCTGCTTGAGCTAT
58.266
34.615
4.44
0.00
42.66
2.97
1365
4982
2.350522
CAGGAGTTTGAGTTGGATCCG
58.649
52.381
7.39
0.00
31.97
4.18
1392
5009
5.803461
ACATGTTCTTGCATCATGAAAATCG
59.197
36.000
20.34
8.31
40.64
3.34
1484
5104
7.230747
TGTGAACCTCTCCTAATGAATCAAAA
58.769
34.615
0.00
0.00
0.00
2.44
1600
6007
2.170607
TCCCCTTGACATAGCTGTTAGC
59.829
50.000
0.00
0.00
42.84
3.09
1601
6008
4.446371
CTTCCCCTTGACATAGCTGTTAG
58.554
47.826
0.00
0.00
35.14
2.34
1602
6009
3.199946
CCTTCCCCTTGACATAGCTGTTA
59.800
47.826
0.00
0.00
35.14
2.41
1603
6010
2.025887
CCTTCCCCTTGACATAGCTGTT
60.026
50.000
0.00
0.00
35.14
3.16
1604
6011
1.561542
CCTTCCCCTTGACATAGCTGT
59.438
52.381
0.00
0.00
38.67
4.40
1605
6012
1.748591
GCCTTCCCCTTGACATAGCTG
60.749
57.143
0.00
0.00
0.00
4.24
1606
6013
0.548510
GCCTTCCCCTTGACATAGCT
59.451
55.000
0.00
0.00
0.00
3.32
1688
6102
0.251634
CCTCCTCTTGTTCCTCTGCC
59.748
60.000
0.00
0.00
0.00
4.85
1689
6103
0.251634
CCCTCCTCTTGTTCCTCTGC
59.748
60.000
0.00
0.00
0.00
4.26
1690
6104
1.552792
GACCCTCCTCTTGTTCCTCTG
59.447
57.143
0.00
0.00
0.00
3.35
1691
6105
1.435168
AGACCCTCCTCTTGTTCCTCT
59.565
52.381
0.00
0.00
0.00
3.69
1692
6106
1.552792
CAGACCCTCCTCTTGTTCCTC
59.447
57.143
0.00
0.00
0.00
3.71
1693
6107
1.650528
CAGACCCTCCTCTTGTTCCT
58.349
55.000
0.00
0.00
0.00
3.36
1694
6108
0.615850
CCAGACCCTCCTCTTGTTCC
59.384
60.000
0.00
0.00
0.00
3.62
1695
6109
1.002544
CACCAGACCCTCCTCTTGTTC
59.997
57.143
0.00
0.00
0.00
3.18
1696
6110
1.059913
CACCAGACCCTCCTCTTGTT
58.940
55.000
0.00
0.00
0.00
2.83
1697
6111
1.484444
GCACCAGACCCTCCTCTTGT
61.484
60.000
0.00
0.00
0.00
3.16
1698
6112
1.197430
AGCACCAGACCCTCCTCTTG
61.197
60.000
0.00
0.00
0.00
3.02
1699
6113
1.159664
AGCACCAGACCCTCCTCTT
59.840
57.895
0.00
0.00
0.00
2.85
1700
6114
1.611851
CAGCACCAGACCCTCCTCT
60.612
63.158
0.00
0.00
0.00
3.69
1701
6115
2.664081
CCAGCACCAGACCCTCCTC
61.664
68.421
0.00
0.00
0.00
3.71
1702
6116
2.608988
CCAGCACCAGACCCTCCT
60.609
66.667
0.00
0.00
0.00
3.69
1703
6117
4.416738
GCCAGCACCAGACCCTCC
62.417
72.222
0.00
0.00
0.00
4.30
1704
6118
3.618780
CTGCCAGCACCAGACCCTC
62.619
68.421
0.00
0.00
32.03
4.30
1705
6119
3.644606
CTGCCAGCACCAGACCCT
61.645
66.667
0.00
0.00
32.03
4.34
1706
6120
3.618780
CTCTGCCAGCACCAGACCC
62.619
68.421
0.00
0.00
35.60
4.46
1707
6121
2.046507
CTCTGCCAGCACCAGACC
60.047
66.667
0.00
0.00
35.60
3.85
1708
6122
2.046507
CCTCTGCCAGCACCAGAC
60.047
66.667
0.00
0.00
35.60
3.51
1709
6123
1.842920
TTCCTCTGCCAGCACCAGA
60.843
57.895
0.00
0.00
37.71
3.86
1710
6124
1.673665
GTTCCTCTGCCAGCACCAG
60.674
63.158
0.00
0.00
0.00
4.00
1711
6125
1.993701
TTGTTCCTCTGCCAGCACCA
61.994
55.000
0.00
0.00
0.00
4.17
1712
6126
0.610232
ATTGTTCCTCTGCCAGCACC
60.610
55.000
0.00
0.00
0.00
5.01
1713
6127
2.113860
TATTGTTCCTCTGCCAGCAC
57.886
50.000
0.00
0.00
0.00
4.40
1714
6128
2.305635
TCTTATTGTTCCTCTGCCAGCA
59.694
45.455
0.00
0.00
0.00
4.41
1715
6129
2.941720
CTCTTATTGTTCCTCTGCCAGC
59.058
50.000
0.00
0.00
0.00
4.85
1716
6130
3.539604
CCTCTTATTGTTCCTCTGCCAG
58.460
50.000
0.00
0.00
0.00
4.85
1717
6131
2.239654
CCCTCTTATTGTTCCTCTGCCA
59.760
50.000
0.00
0.00
0.00
4.92
1741
6185
0.196118
TTCCTCTTGTTCCCCTCCCT
59.804
55.000
0.00
0.00
0.00
4.20
1765
6209
2.157305
TTGCATTTGCCCCTCTTGCG
62.157
55.000
0.00
0.00
41.18
4.85
1799
6249
6.376581
ACTCCTCTTCTAGAATTTGCATTTGG
59.623
38.462
5.44
0.00
0.00
3.28
1811
6261
6.859112
AGTTGCATTTACTCCTCTTCTAGA
57.141
37.500
0.00
0.00
0.00
2.43
1844
6327
2.472029
AGTATTAGTGGCACCTGCTCT
58.528
47.619
15.27
5.25
41.70
4.09
1855
6338
4.262249
GCTCTTGCCCCTCTAGTATTAGTG
60.262
50.000
0.00
0.00
0.00
2.74
1862
6345
1.621672
GCTGCTCTTGCCCCTCTAGT
61.622
60.000
0.00
0.00
38.71
2.57
1870
6353
1.303155
AGGAGTTGCTGCTCTTGCC
60.303
57.895
0.00
0.00
38.71
4.52
1883
6366
3.166679
GGAGGTTGTAGAAGACAGGAGT
58.833
50.000
0.00
0.00
39.88
3.85
1890
6373
5.640158
TCCAAAAAGGAGGTTGTAGAAGA
57.360
39.130
0.00
0.00
43.07
2.87
1928
6412
5.376625
TCTTGAAGTTCCTGTTGCTGTAAT
58.623
37.500
0.00
0.00
0.00
1.89
2100
6585
5.536497
AAGGGGAAGGTTCAGAAATGTAT
57.464
39.130
0.00
0.00
0.00
2.29
2120
6605
4.576463
AGAACAAGGTTCAGTAGCACAAAG
59.424
41.667
11.28
0.00
0.00
2.77
2161
6646
6.774170
ACATCACAACCATCACATATAGCAAT
59.226
34.615
0.00
0.00
0.00
3.56
2338
6839
7.158697
TGTTGTTGCAGAACTACATATAGTGT
58.841
34.615
10.90
0.00
41.14
3.55
2385
6888
3.757836
GGTTCAAACCCTAGGCCAA
57.242
52.632
5.01
0.00
43.43
4.52
2406
6909
3.264964
ACGACTCTTCTCTTCCTAGGTCT
59.735
47.826
9.08
0.00
0.00
3.85
2415
6918
2.442413
AGCTAGCACGACTCTTCTCTT
58.558
47.619
18.83
0.00
0.00
2.85
2479
6982
3.306472
AGCAGGCTTCTACTAGTAGCT
57.694
47.619
22.87
13.64
38.48
3.32
2480
6983
5.941647
AGTATAGCAGGCTTCTACTAGTAGC
59.058
44.000
22.87
15.25
37.82
3.58
2500
7005
4.926207
GTGAAACGGCGGGAGTAT
57.074
55.556
13.24
0.00
0.00
2.12
2525
7030
3.151554
TGACTTTGTACTAGTCGCAGGA
58.848
45.455
17.88
4.06
43.90
3.86
2545
7050
2.421529
GGCACTTTACAGATACCCCCTG
60.422
54.545
0.00
0.00
37.64
4.45
2615
7121
1.269883
ACGTACGGTGCAAATCAGACA
60.270
47.619
21.06
0.00
0.00
3.41
2654
7164
5.537188
TGCAAAATATGGAAAAGTGGTGTC
58.463
37.500
0.00
0.00
0.00
3.67
2655
7165
5.543507
TGCAAAATATGGAAAAGTGGTGT
57.456
34.783
0.00
0.00
0.00
4.16
2719
7230
5.372343
ACATGAGGTAAATGCATAGGTGA
57.628
39.130
0.00
0.00
0.00
4.02
2740
7251
5.356190
GCCTGTAAAACCCTCATAAACCTAC
59.644
44.000
0.00
0.00
0.00
3.18
2741
7252
5.014333
TGCCTGTAAAACCCTCATAAACCTA
59.986
40.000
0.00
0.00
0.00
3.08
2742
7253
4.202631
TGCCTGTAAAACCCTCATAAACCT
60.203
41.667
0.00
0.00
0.00
3.50
2743
7254
4.083565
TGCCTGTAAAACCCTCATAAACC
58.916
43.478
0.00
0.00
0.00
3.27
2744
7255
4.157840
CCTGCCTGTAAAACCCTCATAAAC
59.842
45.833
0.00
0.00
0.00
2.01
2745
7256
4.202631
ACCTGCCTGTAAAACCCTCATAAA
60.203
41.667
0.00
0.00
0.00
1.40
2746
7257
3.332485
ACCTGCCTGTAAAACCCTCATAA
59.668
43.478
0.00
0.00
0.00
1.90
2747
7258
2.916934
ACCTGCCTGTAAAACCCTCATA
59.083
45.455
0.00
0.00
0.00
2.15
2748
7259
1.710809
ACCTGCCTGTAAAACCCTCAT
59.289
47.619
0.00
0.00
0.00
2.90
2749
7260
1.145571
ACCTGCCTGTAAAACCCTCA
58.854
50.000
0.00
0.00
0.00
3.86
2750
7261
1.073284
TCACCTGCCTGTAAAACCCTC
59.927
52.381
0.00
0.00
0.00
4.30
2751
7262
1.145571
TCACCTGCCTGTAAAACCCT
58.854
50.000
0.00
0.00
0.00
4.34
2752
7263
1.989706
TTCACCTGCCTGTAAAACCC
58.010
50.000
0.00
0.00
0.00
4.11
2753
7264
4.600692
AAATTCACCTGCCTGTAAAACC
57.399
40.909
0.00
0.00
0.00
3.27
2754
7265
5.596845
TCAAAATTCACCTGCCTGTAAAAC
58.403
37.500
0.00
0.00
0.00
2.43
2755
7266
5.860941
TCAAAATTCACCTGCCTGTAAAA
57.139
34.783
0.00
0.00
0.00
1.52
2756
7267
6.041409
TCAATCAAAATTCACCTGCCTGTAAA
59.959
34.615
0.00
0.00
0.00
2.01
2757
7268
5.538053
TCAATCAAAATTCACCTGCCTGTAA
59.462
36.000
0.00
0.00
0.00
2.41
2758
7269
5.076182
TCAATCAAAATTCACCTGCCTGTA
58.924
37.500
0.00
0.00
0.00
2.74
2759
7270
3.896888
TCAATCAAAATTCACCTGCCTGT
59.103
39.130
0.00
0.00
0.00
4.00
2760
7271
4.524316
TCAATCAAAATTCACCTGCCTG
57.476
40.909
0.00
0.00
0.00
4.85
2761
7272
4.834496
TCTTCAATCAAAATTCACCTGCCT
59.166
37.500
0.00
0.00
0.00
4.75
2762
7273
5.138125
TCTTCAATCAAAATTCACCTGCC
57.862
39.130
0.00
0.00
0.00
4.85
2763
7274
6.869913
TCAATCTTCAATCAAAATTCACCTGC
59.130
34.615
0.00
0.00
0.00
4.85
2764
7275
8.869897
CATCAATCTTCAATCAAAATTCACCTG
58.130
33.333
0.00
0.00
0.00
4.00
2765
7276
8.809066
TCATCAATCTTCAATCAAAATTCACCT
58.191
29.630
0.00
0.00
0.00
4.00
2766
7277
8.991243
TCATCAATCTTCAATCAAAATTCACC
57.009
30.769
0.00
0.00
0.00
4.02
2767
7278
9.850628
TCTCATCAATCTTCAATCAAAATTCAC
57.149
29.630
0.00
0.00
0.00
3.18
2769
7280
9.517609
CCTCTCATCAATCTTCAATCAAAATTC
57.482
33.333
0.00
0.00
0.00
2.17
2770
7281
9.251440
TCCTCTCATCAATCTTCAATCAAAATT
57.749
29.630
0.00
0.00
0.00
1.82
2771
7282
8.818622
TCCTCTCATCAATCTTCAATCAAAAT
57.181
30.769
0.00
0.00
0.00
1.82
2772
7283
7.338703
CCTCCTCTCATCAATCTTCAATCAAAA
59.661
37.037
0.00
0.00
0.00
2.44
2773
7284
6.827251
CCTCCTCTCATCAATCTTCAATCAAA
59.173
38.462
0.00
0.00
0.00
2.69
2774
7285
6.354938
CCTCCTCTCATCAATCTTCAATCAA
58.645
40.000
0.00
0.00
0.00
2.57
2775
7286
5.163227
CCCTCCTCTCATCAATCTTCAATCA
60.163
44.000
0.00
0.00
0.00
2.57
2776
7287
5.307204
CCCTCCTCTCATCAATCTTCAATC
58.693
45.833
0.00
0.00
0.00
2.67
2777
7288
4.104420
CCCCTCCTCTCATCAATCTTCAAT
59.896
45.833
0.00
0.00
0.00
2.57
2778
7289
3.457380
CCCCTCCTCTCATCAATCTTCAA
59.543
47.826
0.00
0.00
0.00
2.69
2779
7290
3.044156
CCCCTCCTCTCATCAATCTTCA
58.956
50.000
0.00
0.00
0.00
3.02
2780
7291
2.224499
GCCCCTCCTCTCATCAATCTTC
60.224
54.545
0.00
0.00
0.00
2.87
2781
7292
1.773653
GCCCCTCCTCTCATCAATCTT
59.226
52.381
0.00
0.00
0.00
2.40
2782
7293
1.433121
GCCCCTCCTCTCATCAATCT
58.567
55.000
0.00
0.00
0.00
2.40
2783
7294
0.399833
GGCCCCTCCTCTCATCAATC
59.600
60.000
0.00
0.00
0.00
2.67
2784
7295
0.029267
AGGCCCCTCCTCTCATCAAT
60.029
55.000
0.00
0.00
43.20
2.57
2785
7296
0.642156
TAGGCCCCTCCTCTCATCAA
59.358
55.000
0.00
0.00
43.20
2.57
2786
7297
0.105453
GTAGGCCCCTCCTCTCATCA
60.105
60.000
0.00
0.00
43.20
3.07
2787
7298
0.834261
GGTAGGCCCCTCCTCTCATC
60.834
65.000
0.00
0.00
43.20
2.92
2788
7299
1.237458
GGTAGGCCCCTCCTCTCAT
59.763
63.158
0.00
0.00
43.20
2.90
2789
7300
2.696893
GGTAGGCCCCTCCTCTCA
59.303
66.667
0.00
0.00
43.20
3.27
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.