Multiple sequence alignment - TraesCS2B01G100500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G100500 chr2B 100.000 3335 0 0 1 3335 61268106 61264772 0.000000e+00 6159.0
1 TraesCS2B01G100500 chr2B 93.923 181 10 1 2359 2539 801141346 801141525 4.240000e-69 272.0
2 TraesCS2B01G100500 chr2B 90.000 200 16 4 2362 2560 7658827 7659023 4.270000e-64 255.0
3 TraesCS2B01G100500 chr2B 90.385 52 5 0 3281 3332 216932878 216932929 5.970000e-08 69.4
4 TraesCS2B01G100500 chr2A 90.453 1875 115 32 532 2367 39577699 39579548 0.000000e+00 2412.0
5 TraesCS2B01G100500 chr2A 87.547 803 52 23 498 1255 39949992 39949193 0.000000e+00 885.0
6 TraesCS2B01G100500 chr2A 84.519 478 43 18 158 607 39550174 39550648 8.490000e-121 444.0
7 TraesCS2B01G100500 chr2A 89.935 308 27 3 137 443 39557508 39557812 8.670000e-106 394.0
8 TraesCS2B01G100500 chr2A 91.844 282 16 2 2086 2360 39948090 39947809 1.450000e-103 387.0
9 TraesCS2B01G100500 chr2A 83.012 259 19 14 638 889 39557247 39557487 9.370000e-51 211.0
10 TraesCS2B01G100500 chr2A 91.579 95 6 2 2543 2635 39579540 39579634 2.700000e-26 130.0
11 TraesCS2B01G100500 chr2A 82.803 157 4 10 3168 3323 306110302 306110436 5.840000e-23 119.0
12 TraesCS2B01G100500 chr2D 92.674 1324 91 1 1050 2367 36222058 36223381 0.000000e+00 1903.0
13 TraesCS2B01G100500 chr2D 85.224 758 52 26 158 883 36219708 36220437 0.000000e+00 725.0
14 TraesCS2B01G100500 chr2D 91.639 299 21 3 137 434 36220464 36220759 8.610000e-111 411.0
15 TraesCS2B01G100500 chr2D 83.183 333 16 21 765 1059 36221494 36221824 5.480000e-68 268.0
16 TraesCS2B01G100500 chr2D 88.942 208 15 7 2358 2562 590723118 590722916 1.990000e-62 250.0
17 TraesCS2B01G100500 chr3D 89.908 981 74 7 1052 2029 380480368 380479410 0.000000e+00 1240.0
18 TraesCS2B01G100500 chr3D 87.295 488 21 15 606 1054 380482279 380481794 1.370000e-143 520.0
19 TraesCS2B01G100500 chr3D 86.842 152 18 2 440 591 380095427 380095576 5.720000e-38 169.0
20 TraesCS2B01G100500 chr6D 84.035 689 77 9 2667 3332 57822335 57821657 1.690000e-177 632.0
21 TraesCS2B01G100500 chr6D 83.741 695 71 15 2667 3335 142982798 142983476 1.310000e-173 619.0
22 TraesCS2B01G100500 chr6D 80.309 711 70 23 2665 3323 69791172 69790480 1.080000e-129 473.0
23 TraesCS2B01G100500 chr6D 80.028 711 72 26 2665 3323 69752785 69752093 2.340000e-126 462.0
24 TraesCS2B01G100500 chr6D 84.635 384 49 7 2939 3319 341082355 341082731 1.130000e-99 374.0
25 TraesCS2B01G100500 chr6A 84.351 639 67 12 2668 3282 72841492 72840863 2.210000e-166 595.0
26 TraesCS2B01G100500 chr7B 82.148 717 68 17 2665 3335 156759411 156758709 8.080000e-156 560.0
27 TraesCS2B01G100500 chr7B 85.714 392 49 5 2942 3332 599800314 599799929 1.110000e-109 407.0
28 TraesCS2B01G100500 chr7B 92.593 189 12 2 2352 2539 668908789 668908602 1.520000e-68 270.0
29 TraesCS2B01G100500 chr7B 93.407 182 10 2 2360 2539 716683195 716683376 5.480000e-68 268.0
30 TraesCS2B01G100500 chr7B 92.063 189 13 2 2359 2547 218546275 218546089 7.090000e-67 265.0
31 TraesCS2B01G100500 chr5D 81.552 683 80 15 2678 3332 134728297 134728961 3.810000e-144 521.0
32 TraesCS2B01G100500 chr7D 80.460 696 86 25 2665 3332 33717219 33716546 1.390000e-133 486.0
33 TraesCS2B01G100500 chr5B 80.680 647 86 19 2678 3295 146170670 146171306 1.810000e-127 466.0
34 TraesCS2B01G100500 chr1D 88.564 376 30 4 2908 3282 288932131 288931768 8.490000e-121 444.0
35 TraesCS2B01G100500 chr1D 81.092 513 54 15 2699 3184 263168796 263168300 1.460000e-98 370.0
36 TraesCS2B01G100500 chr4A 79.769 692 75 23 2667 3328 673411449 673410793 3.050000e-120 442.0
37 TraesCS2B01G100500 chr6B 88.366 361 27 11 2939 3295 144756258 144755909 1.430000e-113 420.0
38 TraesCS2B01G100500 chr7A 82.167 443 44 12 2697 3117 50573010 50573439 6.850000e-92 348.0
39 TraesCS2B01G100500 chr7A 83.586 396 39 11 2941 3334 668313325 668313696 6.850000e-92 348.0
40 TraesCS2B01G100500 chr7A 84.681 235 22 4 3099 3332 710821206 710820985 4.330000e-54 222.0
41 TraesCS2B01G100500 chr3B 92.670 191 12 2 2362 2551 15973987 15974176 1.180000e-69 274.0
42 TraesCS2B01G100500 chr3B 92.473 186 11 3 2355 2539 752167901 752168084 2.550000e-66 263.0
43 TraesCS2B01G100500 chr5A 75.287 696 97 34 2665 3320 639190317 639190977 2.550000e-66 263.0
44 TraesCS2B01G100500 chr4B 92.432 185 12 2 2357 2539 592626506 592626690 2.550000e-66 263.0
45 TraesCS2B01G100500 chr3A 90.805 87 8 0 3233 3319 224354604 224354518 2.100000e-22 117.0
46 TraesCS2B01G100500 chr3A 90.769 65 6 0 3252 3316 583740121 583740185 1.650000e-13 87.9
47 TraesCS2B01G100500 chr3A 100.000 36 0 0 672 707 510299819 510299854 2.150000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G100500 chr2B 61264772 61268106 3334 True 6159.00 6159 100.0000 1 3335 1 chr2B.!!$R1 3334
1 TraesCS2B01G100500 chr2A 39577699 39579634 1935 False 1271.00 2412 91.0160 532 2635 2 chr2A.!!$F4 2103
2 TraesCS2B01G100500 chr2A 39947809 39949992 2183 True 636.00 885 89.6955 498 2360 2 chr2A.!!$R1 1862
3 TraesCS2B01G100500 chr2A 39557247 39557812 565 False 302.50 394 86.4735 137 889 2 chr2A.!!$F3 752
4 TraesCS2B01G100500 chr2D 36219708 36223381 3673 False 826.75 1903 88.1800 137 2367 4 chr2D.!!$F1 2230
5 TraesCS2B01G100500 chr3D 380479410 380482279 2869 True 880.00 1240 88.6015 606 2029 2 chr3D.!!$R1 1423
6 TraesCS2B01G100500 chr6D 57821657 57822335 678 True 632.00 632 84.0350 2667 3332 1 chr6D.!!$R1 665
7 TraesCS2B01G100500 chr6D 142982798 142983476 678 False 619.00 619 83.7410 2667 3335 1 chr6D.!!$F1 668
8 TraesCS2B01G100500 chr6D 69790480 69791172 692 True 473.00 473 80.3090 2665 3323 1 chr6D.!!$R3 658
9 TraesCS2B01G100500 chr6D 69752093 69752785 692 True 462.00 462 80.0280 2665 3323 1 chr6D.!!$R2 658
10 TraesCS2B01G100500 chr6A 72840863 72841492 629 True 595.00 595 84.3510 2668 3282 1 chr6A.!!$R1 614
11 TraesCS2B01G100500 chr7B 156758709 156759411 702 True 560.00 560 82.1480 2665 3335 1 chr7B.!!$R1 670
12 TraesCS2B01G100500 chr5D 134728297 134728961 664 False 521.00 521 81.5520 2678 3332 1 chr5D.!!$F1 654
13 TraesCS2B01G100500 chr7D 33716546 33717219 673 True 486.00 486 80.4600 2665 3332 1 chr7D.!!$R1 667
14 TraesCS2B01G100500 chr5B 146170670 146171306 636 False 466.00 466 80.6800 2678 3295 1 chr5B.!!$F1 617
15 TraesCS2B01G100500 chr4A 673410793 673411449 656 True 442.00 442 79.7690 2667 3328 1 chr4A.!!$R1 661
16 TraesCS2B01G100500 chr5A 639190317 639190977 660 False 263.00 263 75.2870 2665 3320 1 chr5A.!!$F1 655

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.039165 GCGTTCCTTTTGGCTCCAAG 60.039 55.0 1.26 0.0 40.12 3.61 F
252 253 0.181350 CTAATGACCCAGACTGCCCC 59.819 60.0 0.00 0.0 0.00 5.80 F
1635 5020 0.179045 AGCACCAGGAATACGCCATC 60.179 55.0 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1385 4767 0.320247 CACGTCAAGGAAGCTCTGCT 60.320 55.0 0.00 0.00 42.56 4.24 R
2091 5555 0.035725 CTGAGATCACCAGGCTTGCA 60.036 55.0 0.00 0.00 0.00 4.08 R
3285 6923 0.249073 CTTCGGAGCTACCATGGACG 60.249 60.0 21.47 9.78 38.90 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.126071 ACGGCAGATCGTTCACCG 60.126 61.111 20.13 20.13 44.77 4.94
23 24 2.885644 CGGCAGATCGTTCACCGG 60.886 66.667 16.12 0.00 39.11 5.28
24 25 3.195698 GGCAGATCGTTCACCGGC 61.196 66.667 0.00 0.00 37.11 6.13
25 26 2.434185 GCAGATCGTTCACCGGCA 60.434 61.111 0.00 0.00 37.11 5.69
26 27 2.740714 GCAGATCGTTCACCGGCAC 61.741 63.158 0.00 0.00 37.11 5.01
27 28 2.100631 CAGATCGTTCACCGGCACC 61.101 63.158 0.00 0.00 37.11 5.01
28 29 2.264794 GATCGTTCACCGGCACCT 59.735 61.111 0.00 0.00 37.11 4.00
29 30 1.810030 GATCGTTCACCGGCACCTC 60.810 63.158 0.00 0.00 37.11 3.85
30 31 3.310860 ATCGTTCACCGGCACCTCC 62.311 63.158 0.00 0.00 37.11 4.30
32 33 3.637273 GTTCACCGGCACCTCCCT 61.637 66.667 0.00 0.00 0.00 4.20
33 34 3.636231 TTCACCGGCACCTCCCTG 61.636 66.667 0.00 0.00 0.00 4.45
34 35 4.631740 TCACCGGCACCTCCCTGA 62.632 66.667 0.00 0.00 0.00 3.86
35 36 3.636231 CACCGGCACCTCCCTGAA 61.636 66.667 0.00 0.00 0.00 3.02
36 37 3.637273 ACCGGCACCTCCCTGAAC 61.637 66.667 0.00 0.00 0.00 3.18
37 38 4.410400 CCGGCACCTCCCTGAACC 62.410 72.222 0.00 0.00 0.00 3.62
38 39 4.760047 CGGCACCTCCCTGAACCG 62.760 72.222 0.00 0.00 0.00 4.44
39 40 4.410400 GGCACCTCCCTGAACCGG 62.410 72.222 0.00 0.00 0.00 5.28
40 41 3.637273 GCACCTCCCTGAACCGGT 61.637 66.667 0.00 0.00 0.00 5.28
41 42 2.288025 GCACCTCCCTGAACCGGTA 61.288 63.158 8.00 0.00 0.00 4.02
42 43 1.833787 GCACCTCCCTGAACCGGTAA 61.834 60.000 8.00 0.00 0.00 2.85
43 44 0.688487 CACCTCCCTGAACCGGTAAA 59.312 55.000 8.00 0.00 0.00 2.01
44 45 1.072648 CACCTCCCTGAACCGGTAAAA 59.927 52.381 8.00 0.00 0.00 1.52
45 46 1.776063 ACCTCCCTGAACCGGTAAAAA 59.224 47.619 8.00 0.00 0.00 1.94
46 47 2.224695 ACCTCCCTGAACCGGTAAAAAG 60.225 50.000 8.00 2.89 0.00 2.27
47 48 2.224695 CCTCCCTGAACCGGTAAAAAGT 60.225 50.000 8.00 0.00 0.00 2.66
48 49 2.812011 CTCCCTGAACCGGTAAAAAGTG 59.188 50.000 8.00 0.00 0.00 3.16
49 50 1.883926 CCCTGAACCGGTAAAAAGTGG 59.116 52.381 8.00 3.58 0.00 4.00
50 51 2.578786 CCTGAACCGGTAAAAAGTGGT 58.421 47.619 8.00 0.00 35.90 4.16
51 52 2.953648 CCTGAACCGGTAAAAAGTGGTT 59.046 45.455 8.00 0.00 46.90 3.67
52 53 3.382227 CCTGAACCGGTAAAAAGTGGTTT 59.618 43.478 8.00 0.00 44.40 3.27
53 54 4.356289 CTGAACCGGTAAAAAGTGGTTTG 58.644 43.478 8.00 0.00 44.40 2.93
54 55 2.875087 ACCGGTAAAAAGTGGTTTGC 57.125 45.000 4.49 0.00 0.00 3.68
55 56 1.065851 ACCGGTAAAAAGTGGTTTGCG 59.934 47.619 4.49 0.00 0.00 4.85
56 57 1.065851 CCGGTAAAAAGTGGTTTGCGT 59.934 47.619 0.00 0.00 0.00 5.24
57 58 2.479901 CCGGTAAAAAGTGGTTTGCGTT 60.480 45.455 0.00 0.00 0.00 4.84
58 59 2.784928 CGGTAAAAAGTGGTTTGCGTTC 59.215 45.455 0.00 0.00 0.00 3.95
59 60 3.117794 GGTAAAAAGTGGTTTGCGTTCC 58.882 45.455 0.00 0.00 0.00 3.62
60 61 3.181484 GGTAAAAAGTGGTTTGCGTTCCT 60.181 43.478 0.00 0.00 0.00 3.36
61 62 3.603158 AAAAAGTGGTTTGCGTTCCTT 57.397 38.095 0.00 0.00 0.00 3.36
62 63 3.603158 AAAAGTGGTTTGCGTTCCTTT 57.397 38.095 0.00 0.00 0.00 3.11
63 64 3.603158 AAAGTGGTTTGCGTTCCTTTT 57.397 38.095 0.00 0.00 0.00 2.27
64 65 2.577449 AGTGGTTTGCGTTCCTTTTG 57.423 45.000 0.00 0.00 0.00 2.44
65 66 1.136110 AGTGGTTTGCGTTCCTTTTGG 59.864 47.619 0.00 0.00 42.21 3.28
66 67 0.179097 TGGTTTGCGTTCCTTTTGGC 60.179 50.000 0.00 0.00 40.12 4.52
67 68 0.104120 GGTTTGCGTTCCTTTTGGCT 59.896 50.000 0.00 0.00 40.12 4.75
68 69 1.487482 GTTTGCGTTCCTTTTGGCTC 58.513 50.000 0.00 0.00 40.12 4.70
69 70 0.387565 TTTGCGTTCCTTTTGGCTCC 59.612 50.000 0.00 0.00 40.12 4.70
70 71 0.753479 TTGCGTTCCTTTTGGCTCCA 60.753 50.000 0.00 0.00 40.12 3.86
71 72 0.753479 TGCGTTCCTTTTGGCTCCAA 60.753 50.000 0.00 0.00 40.12 3.53
72 73 0.039165 GCGTTCCTTTTGGCTCCAAG 60.039 55.000 1.26 0.00 40.12 3.61
73 74 0.598065 CGTTCCTTTTGGCTCCAAGG 59.402 55.000 1.26 1.15 41.04 3.61
74 75 0.969149 GTTCCTTTTGGCTCCAAGGG 59.031 55.000 13.09 13.09 40.21 3.95
75 76 0.560688 TTCCTTTTGGCTCCAAGGGT 59.439 50.000 16.49 0.00 40.21 4.34
76 77 0.560688 TCCTTTTGGCTCCAAGGGTT 59.439 50.000 16.49 0.00 40.21 4.11
77 78 1.783979 TCCTTTTGGCTCCAAGGGTTA 59.216 47.619 16.49 3.10 40.21 2.85
78 79 2.381961 TCCTTTTGGCTCCAAGGGTTAT 59.618 45.455 16.49 0.00 40.21 1.89
79 80 2.760650 CCTTTTGGCTCCAAGGGTTATC 59.239 50.000 1.26 0.00 36.62 1.75
80 81 3.564352 CCTTTTGGCTCCAAGGGTTATCT 60.564 47.826 1.26 0.00 36.62 1.98
81 82 4.325030 CCTTTTGGCTCCAAGGGTTATCTA 60.325 45.833 1.26 0.00 36.62 1.98
82 83 4.938575 TTTGGCTCCAAGGGTTATCTAA 57.061 40.909 1.26 0.00 37.24 2.10
83 84 5.466127 TTTGGCTCCAAGGGTTATCTAAT 57.534 39.130 1.26 0.00 37.24 1.73
84 85 4.706842 TGGCTCCAAGGGTTATCTAATC 57.293 45.455 0.00 0.00 0.00 1.75
85 86 3.394606 TGGCTCCAAGGGTTATCTAATCC 59.605 47.826 0.00 0.00 36.70 3.01
86 87 3.244946 GGCTCCAAGGGTTATCTAATCCC 60.245 52.174 0.00 0.00 37.15 3.85
87 88 3.394606 GCTCCAAGGGTTATCTAATCCCA 59.605 47.826 0.00 0.00 43.31 4.37
88 89 4.141251 GCTCCAAGGGTTATCTAATCCCAA 60.141 45.833 0.00 0.00 43.31 4.12
89 90 5.633854 GCTCCAAGGGTTATCTAATCCCAAA 60.634 44.000 0.00 0.00 43.31 3.28
90 91 6.410222 TCCAAGGGTTATCTAATCCCAAAA 57.590 37.500 0.00 0.00 43.31 2.44
91 92 6.992235 TCCAAGGGTTATCTAATCCCAAAAT 58.008 36.000 0.00 0.00 43.31 1.82
92 93 7.066781 TCCAAGGGTTATCTAATCCCAAAATC 58.933 38.462 0.00 0.00 43.31 2.17
93 94 7.069344 CCAAGGGTTATCTAATCCCAAAATCT 58.931 38.462 0.00 0.00 43.31 2.40
94 95 7.014615 CCAAGGGTTATCTAATCCCAAAATCTG 59.985 40.741 0.00 0.00 43.31 2.90
95 96 7.465900 AGGGTTATCTAATCCCAAAATCTGA 57.534 36.000 0.00 0.00 43.31 3.27
96 97 7.521669 AGGGTTATCTAATCCCAAAATCTGAG 58.478 38.462 0.00 0.00 43.31 3.35
97 98 7.129504 AGGGTTATCTAATCCCAAAATCTGAGT 59.870 37.037 0.00 0.00 43.31 3.41
98 99 7.445707 GGGTTATCTAATCCCAAAATCTGAGTC 59.554 40.741 0.00 0.00 40.79 3.36
99 100 7.171678 GGTTATCTAATCCCAAAATCTGAGTCG 59.828 40.741 0.00 0.00 0.00 4.18
100 101 5.932619 TCTAATCCCAAAATCTGAGTCGA 57.067 39.130 0.00 0.00 0.00 4.20
101 102 5.661458 TCTAATCCCAAAATCTGAGTCGAC 58.339 41.667 7.70 7.70 0.00 4.20
102 103 2.762535 TCCCAAAATCTGAGTCGACC 57.237 50.000 13.01 4.42 0.00 4.79
103 104 1.974957 TCCCAAAATCTGAGTCGACCA 59.025 47.619 13.01 9.18 0.00 4.02
104 105 2.370519 TCCCAAAATCTGAGTCGACCAA 59.629 45.455 13.01 0.00 0.00 3.67
105 106 3.009033 TCCCAAAATCTGAGTCGACCAAT 59.991 43.478 13.01 0.00 0.00 3.16
106 107 3.758554 CCCAAAATCTGAGTCGACCAATT 59.241 43.478 13.01 4.31 0.00 2.32
107 108 4.142600 CCCAAAATCTGAGTCGACCAATTC 60.143 45.833 13.01 3.55 0.00 2.17
108 109 4.697352 CCAAAATCTGAGTCGACCAATTCT 59.303 41.667 13.01 0.00 0.00 2.40
109 110 5.391310 CCAAAATCTGAGTCGACCAATTCTG 60.391 44.000 13.01 7.46 0.00 3.02
110 111 4.543590 AATCTGAGTCGACCAATTCTGT 57.456 40.909 13.01 0.00 0.00 3.41
111 112 4.543590 ATCTGAGTCGACCAATTCTGTT 57.456 40.909 13.01 0.00 0.00 3.16
112 113 5.661056 ATCTGAGTCGACCAATTCTGTTA 57.339 39.130 13.01 0.00 0.00 2.41
113 114 5.462530 TCTGAGTCGACCAATTCTGTTAA 57.537 39.130 13.01 0.00 0.00 2.01
114 115 5.470368 TCTGAGTCGACCAATTCTGTTAAG 58.530 41.667 13.01 0.00 0.00 1.85
115 116 5.243060 TCTGAGTCGACCAATTCTGTTAAGA 59.757 40.000 13.01 0.00 0.00 2.10
116 117 6.037786 TGAGTCGACCAATTCTGTTAAGAT 57.962 37.500 13.01 0.00 30.72 2.40
117 118 5.869344 TGAGTCGACCAATTCTGTTAAGATG 59.131 40.000 13.01 0.00 30.72 2.90
118 119 5.794894 AGTCGACCAATTCTGTTAAGATGT 58.205 37.500 13.01 0.00 30.72 3.06
119 120 5.639506 AGTCGACCAATTCTGTTAAGATGTG 59.360 40.000 13.01 0.00 30.72 3.21
120 121 4.391830 TCGACCAATTCTGTTAAGATGTGC 59.608 41.667 0.00 0.00 30.72 4.57
121 122 4.154015 CGACCAATTCTGTTAAGATGTGCA 59.846 41.667 0.00 0.00 30.72 4.57
122 123 5.376854 ACCAATTCTGTTAAGATGTGCAC 57.623 39.130 10.75 10.75 30.72 4.57
123 124 4.218417 ACCAATTCTGTTAAGATGTGCACC 59.782 41.667 15.69 0.00 30.72 5.01
124 125 4.406069 CAATTCTGTTAAGATGTGCACCG 58.594 43.478 15.69 0.00 30.72 4.94
125 126 2.093306 TCTGTTAAGATGTGCACCGG 57.907 50.000 15.69 0.00 0.00 5.28
126 127 0.447801 CTGTTAAGATGTGCACCGGC 59.552 55.000 15.69 3.33 41.68 6.13
127 128 0.958382 TGTTAAGATGTGCACCGGCC 60.958 55.000 15.69 0.00 40.13 6.13
128 129 1.743623 TTAAGATGTGCACCGGCCG 60.744 57.895 21.04 21.04 40.13 6.13
129 130 2.457743 TTAAGATGTGCACCGGCCGT 62.458 55.000 26.12 9.63 40.13 5.68
130 131 2.457743 TAAGATGTGCACCGGCCGTT 62.458 55.000 26.12 6.99 40.13 4.44
131 132 4.101790 GATGTGCACCGGCCGTTG 62.102 66.667 26.12 22.89 40.13 4.10
140 141 3.283684 CGGCCGTTGCACCTCAAA 61.284 61.111 19.50 0.00 40.13 2.69
141 142 2.840066 CGGCCGTTGCACCTCAAAA 61.840 57.895 19.50 0.00 40.13 2.44
142 143 1.439644 GGCCGTTGCACCTCAAAAA 59.560 52.632 0.00 0.00 40.13 1.94
204 205 2.530460 ACATAAAGGGGCAGATGCAA 57.470 45.000 7.19 0.00 44.36 4.08
252 253 0.181350 CTAATGACCCAGACTGCCCC 59.819 60.000 0.00 0.00 0.00 5.80
253 254 1.622607 TAATGACCCAGACTGCCCCG 61.623 60.000 0.00 0.00 0.00 5.73
284 285 1.391485 GACATGTCTAGCGTGCAACTG 59.609 52.381 18.83 0.00 37.62 3.16
292 293 4.747108 GTCTAGCGTGCAACTGATATCATT 59.253 41.667 5.72 0.00 31.75 2.57
392 393 4.536364 ACTGCATAATATCAACGTGCAC 57.464 40.909 6.82 6.82 40.51 4.57
396 397 3.242706 GCATAATATCAACGTGCACTGCA 60.243 43.478 16.19 0.00 35.93 4.41
444 446 2.331809 GGTAAAACCGCTTGAAGCAG 57.668 50.000 18.22 8.58 42.58 4.24
445 447 1.877443 GGTAAAACCGCTTGAAGCAGA 59.123 47.619 18.22 0.00 42.58 4.26
447 449 2.492019 AAAACCGCTTGAAGCAGAAC 57.508 45.000 18.22 0.00 42.58 3.01
448 450 1.680338 AAACCGCTTGAAGCAGAACT 58.320 45.000 18.22 0.00 42.58 3.01
449 451 0.947244 AACCGCTTGAAGCAGAACTG 59.053 50.000 18.22 0.00 42.58 3.16
453 483 0.892814 GCTTGAAGCAGAACTGGGCT 60.893 55.000 13.09 0.00 41.89 5.19
471 501 2.543653 GGCTGGCAAACACAACAACTAG 60.544 50.000 0.00 0.00 0.00 2.57
472 502 2.543653 GCTGGCAAACACAACAACTAGG 60.544 50.000 0.00 0.00 0.00 3.02
489 519 3.834231 ACTAGGGTATGTGGTTTGTACGT 59.166 43.478 0.00 0.00 0.00 3.57
502 532 6.421801 GTGGTTTGTACGTGAACACTACTATT 59.578 38.462 0.00 0.00 0.00 1.73
574 604 8.480853 GCTTAGAATATCACGGCGAATATTATC 58.519 37.037 22.45 15.57 0.00 1.75
578 608 3.737032 TCACGGCGAATATTATCACCA 57.263 42.857 16.62 0.00 0.00 4.17
597 627 4.209703 CACCAACAAGAATCAATTGTGTGC 59.790 41.667 5.13 0.00 39.91 4.57
604 634 9.926158 AACAAGAATCAATTGTGTGCAATATTA 57.074 25.926 5.13 0.00 43.89 0.98
775 831 6.645700 TTGTGTGCAATCAGAAAGAAAAAC 57.354 33.333 0.00 0.00 0.00 2.43
787 851 2.542766 AGAAAAACAGCACACACACG 57.457 45.000 0.00 0.00 0.00 4.49
904 2155 5.676532 CGGTCACCGGATATAGATAGATC 57.323 47.826 8.94 0.00 44.15 2.75
905 2156 5.123936 CGGTCACCGGATATAGATAGATCA 58.876 45.833 8.94 0.00 44.15 2.92
906 2157 5.765677 CGGTCACCGGATATAGATAGATCAT 59.234 44.000 8.94 0.00 44.15 2.45
920 2194 6.083383 AGATAGATCATTGACCATCTCCACT 58.917 40.000 0.00 0.00 31.57 4.00
952 2236 3.495331 TCTGCATTTCTGGCCTACAAAA 58.505 40.909 3.32 0.00 0.00 2.44
1151 3869 2.355363 CTTCGTGTTCGCGGGTGA 60.355 61.111 6.13 0.00 36.96 4.02
1356 4735 3.589988 CATTGCTAAACCTCACGAGTCT 58.410 45.455 0.00 0.00 0.00 3.24
1635 5020 0.179045 AGCACCAGGAATACGCCATC 60.179 55.000 0.00 0.00 0.00 3.51
1710 5095 3.449227 CTGGCGCCGGTGTCTCTA 61.449 66.667 27.83 1.51 0.00 2.43
1747 5132 2.922503 TCCAGCGCCTCAAGGACA 60.923 61.111 2.29 0.00 37.39 4.02
2091 5555 2.729479 CGCCATGCCAGACCTCTCT 61.729 63.158 0.00 0.00 0.00 3.10
2094 5558 1.600638 CATGCCAGACCTCTCTGCA 59.399 57.895 0.00 0.00 42.55 4.41
2109 5573 0.035725 CTGCAAGCCTGGTGATCTCA 60.036 55.000 0.00 0.00 0.00 3.27
2148 5612 1.381327 GGAGGACCTGGACATCGGA 60.381 63.158 0.00 0.00 0.00 4.55
2283 5747 2.711922 CGAGAGGTTGGAGGACCGG 61.712 68.421 0.00 0.00 44.62 5.28
2285 5749 1.889530 GAGAGGTTGGAGGACCGGTG 61.890 65.000 14.63 0.00 44.62 4.94
2286 5750 2.122547 AGGTTGGAGGACCGGTGT 60.123 61.111 14.63 0.00 44.62 4.16
2410 5881 8.972662 TCTAGATGAGATATAATTTGGTCCCA 57.027 34.615 0.00 0.00 0.00 4.37
2411 5882 9.566331 TCTAGATGAGATATAATTTGGTCCCAT 57.434 33.333 0.00 0.00 0.00 4.00
2414 5885 8.672329 AGATGAGATATAATTTGGTCCCATTCA 58.328 33.333 0.00 0.00 0.00 2.57
2415 5886 8.641498 ATGAGATATAATTTGGTCCCATTCAC 57.359 34.615 0.00 0.00 0.00 3.18
2416 5887 7.581814 TGAGATATAATTTGGTCCCATTCACA 58.418 34.615 0.00 0.00 0.00 3.58
2417 5888 8.226810 TGAGATATAATTTGGTCCCATTCACAT 58.773 33.333 0.00 0.00 0.00 3.21
2418 5889 9.082313 GAGATATAATTTGGTCCCATTCACATT 57.918 33.333 0.00 0.00 0.00 2.71
2419 5890 9.438163 AGATATAATTTGGTCCCATTCACATTT 57.562 29.630 0.00 0.00 0.00 2.32
2425 5896 6.463995 TTGGTCCCATTCACATTTTATAGC 57.536 37.500 0.00 0.00 0.00 2.97
2426 5897 4.892934 TGGTCCCATTCACATTTTATAGCC 59.107 41.667 0.00 0.00 0.00 3.93
2427 5898 4.892934 GGTCCCATTCACATTTTATAGCCA 59.107 41.667 0.00 0.00 0.00 4.75
2428 5899 5.539955 GGTCCCATTCACATTTTATAGCCAT 59.460 40.000 0.00 0.00 0.00 4.40
2429 5900 6.041979 GGTCCCATTCACATTTTATAGCCATT 59.958 38.462 0.00 0.00 0.00 3.16
2430 5901 7.232534 GGTCCCATTCACATTTTATAGCCATTA 59.767 37.037 0.00 0.00 0.00 1.90
2431 5902 8.637986 GTCCCATTCACATTTTATAGCCATTAA 58.362 33.333 0.00 0.00 0.00 1.40
2432 5903 9.206690 TCCCATTCACATTTTATAGCCATTAAA 57.793 29.630 0.00 0.00 0.00 1.52
2456 5927 8.777865 AATATTATGCTATAAGATGCGTGTGT 57.222 30.769 0.00 0.00 0.00 3.72
2457 5928 5.905480 TTATGCTATAAGATGCGTGTGTG 57.095 39.130 0.00 0.00 0.00 3.82
2458 5929 1.933181 TGCTATAAGATGCGTGTGTGC 59.067 47.619 0.00 0.00 0.00 4.57
2459 5930 2.205074 GCTATAAGATGCGTGTGTGCT 58.795 47.619 0.00 0.00 35.36 4.40
2460 5931 2.033407 GCTATAAGATGCGTGTGTGCTG 60.033 50.000 0.00 0.00 35.36 4.41
2461 5932 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
2462 5933 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
2463 5934 1.560004 AAGATGCGTGTGTGCTGACG 61.560 55.000 0.00 0.00 38.63 4.35
2464 5935 2.280119 ATGCGTGTGTGCTGACGT 60.280 55.556 0.00 0.00 37.89 4.34
2465 5936 2.484631 GATGCGTGTGTGCTGACGTG 62.485 60.000 0.00 0.00 37.89 4.49
2466 5937 4.000557 GCGTGTGTGCTGACGTGG 62.001 66.667 0.00 0.00 37.89 4.94
2467 5938 3.337889 CGTGTGTGCTGACGTGGG 61.338 66.667 0.00 0.00 0.00 4.61
2468 5939 2.203015 GTGTGTGCTGACGTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
2469 5940 1.817941 GTGTGTGCTGACGTGGGTT 60.818 57.895 0.00 0.00 0.00 4.11
2470 5941 1.078072 TGTGTGCTGACGTGGGTTT 60.078 52.632 0.00 0.00 0.00 3.27
2471 5942 0.678366 TGTGTGCTGACGTGGGTTTT 60.678 50.000 0.00 0.00 0.00 2.43
2472 5943 1.301423 GTGTGCTGACGTGGGTTTTA 58.699 50.000 0.00 0.00 0.00 1.52
2473 5944 1.877443 GTGTGCTGACGTGGGTTTTAT 59.123 47.619 0.00 0.00 0.00 1.40
2474 5945 2.095919 GTGTGCTGACGTGGGTTTTATC 60.096 50.000 0.00 0.00 0.00 1.75
2475 5946 2.224426 TGTGCTGACGTGGGTTTTATCT 60.224 45.455 0.00 0.00 0.00 1.98
2476 5947 2.159627 GTGCTGACGTGGGTTTTATCTG 59.840 50.000 0.00 0.00 0.00 2.90
2477 5948 2.224426 TGCTGACGTGGGTTTTATCTGT 60.224 45.455 0.00 0.00 0.00 3.41
2478 5949 2.812011 GCTGACGTGGGTTTTATCTGTT 59.188 45.455 0.00 0.00 0.00 3.16
2479 5950 3.120304 GCTGACGTGGGTTTTATCTGTTC 60.120 47.826 0.00 0.00 0.00 3.18
2480 5951 4.315803 CTGACGTGGGTTTTATCTGTTCT 58.684 43.478 0.00 0.00 0.00 3.01
2481 5952 4.710324 TGACGTGGGTTTTATCTGTTCTT 58.290 39.130 0.00 0.00 0.00 2.52
2482 5953 5.856156 TGACGTGGGTTTTATCTGTTCTTA 58.144 37.500 0.00 0.00 0.00 2.10
2483 5954 6.469410 TGACGTGGGTTTTATCTGTTCTTAT 58.531 36.000 0.00 0.00 0.00 1.73
2484 5955 6.938030 TGACGTGGGTTTTATCTGTTCTTATT 59.062 34.615 0.00 0.00 0.00 1.40
2485 5956 7.446013 TGACGTGGGTTTTATCTGTTCTTATTT 59.554 33.333 0.00 0.00 0.00 1.40
2486 5957 8.173542 ACGTGGGTTTTATCTGTTCTTATTTT 57.826 30.769 0.00 0.00 0.00 1.82
2487 5958 8.294577 ACGTGGGTTTTATCTGTTCTTATTTTC 58.705 33.333 0.00 0.00 0.00 2.29
2488 5959 8.293867 CGTGGGTTTTATCTGTTCTTATTTTCA 58.706 33.333 0.00 0.00 0.00 2.69
2489 5960 9.974980 GTGGGTTTTATCTGTTCTTATTTTCAA 57.025 29.630 0.00 0.00 0.00 2.69
2501 5972 9.950680 TGTTCTTATTTTCAAAGTGAATGAGAC 57.049 29.630 0.00 0.00 36.11 3.36
2502 5973 9.399403 GTTCTTATTTTCAAAGTGAATGAGACC 57.601 33.333 0.00 0.00 36.11 3.85
2503 5974 8.690203 TCTTATTTTCAAAGTGAATGAGACCA 57.310 30.769 0.00 0.00 36.11 4.02
2504 5975 9.130661 TCTTATTTTCAAAGTGAATGAGACCAA 57.869 29.630 0.00 0.00 36.11 3.67
2505 5976 9.748708 CTTATTTTCAAAGTGAATGAGACCAAA 57.251 29.630 0.00 0.00 36.11 3.28
2538 6009 7.455058 TCATCTAGATGAGTTCTAGGTACTCC 58.545 42.308 27.93 8.04 44.99 3.85
2539 6010 7.293771 TCATCTAGATGAGTTCTAGGTACTCCT 59.706 40.741 27.93 11.31 44.99 3.69
2540 6011 7.606456 CATCTAGATGAGTTCTAGGTACTCCTC 59.394 44.444 25.78 16.93 44.99 3.71
2541 6012 5.056553 AGATGAGTTCTAGGTACTCCTCC 57.943 47.826 17.72 10.13 43.94 4.30
2542 6013 4.479056 AGATGAGTTCTAGGTACTCCTCCA 59.521 45.833 17.72 5.83 43.94 3.86
2543 6014 4.669866 TGAGTTCTAGGTACTCCTCCAA 57.330 45.455 17.72 2.75 43.94 3.53
2544 6015 5.208294 TGAGTTCTAGGTACTCCTCCAAT 57.792 43.478 17.72 0.00 43.94 3.16
2545 6016 6.337185 TGAGTTCTAGGTACTCCTCCAATA 57.663 41.667 17.72 1.70 43.94 1.90
2546 6017 6.923670 TGAGTTCTAGGTACTCCTCCAATAT 58.076 40.000 17.72 0.00 43.94 1.28
2547 6018 8.053776 TGAGTTCTAGGTACTCCTCCAATATA 57.946 38.462 17.72 0.64 43.94 0.86
2548 6019 8.679725 TGAGTTCTAGGTACTCCTCCAATATAT 58.320 37.037 17.72 0.00 43.94 0.86
2549 6020 8.887264 AGTTCTAGGTACTCCTCCAATATATG 57.113 38.462 0.00 0.00 43.94 1.78
2550 6021 8.457757 AGTTCTAGGTACTCCTCCAATATATGT 58.542 37.037 0.00 0.00 43.94 2.29
2575 6048 8.364894 GTTGGATGTTTTTCCTACAACCTTAAT 58.635 33.333 0.00 0.00 40.10 1.40
2610 6083 2.627699 TGGCCTTTGAAGAGCGAATTTT 59.372 40.909 3.32 0.00 0.00 1.82
2637 6110 8.776376 TTTTCTAAAGGTAAAGGTATGTACGG 57.224 34.615 0.00 0.00 0.00 4.02
2638 6111 7.480760 TTCTAAAGGTAAAGGTATGTACGGT 57.519 36.000 0.00 0.00 0.00 4.83
2639 6112 7.480760 TCTAAAGGTAAAGGTATGTACGGTT 57.519 36.000 0.00 0.00 0.00 4.44
2640 6113 7.547227 TCTAAAGGTAAAGGTATGTACGGTTC 58.453 38.462 0.00 0.00 0.00 3.62
2641 6114 5.743636 AAGGTAAAGGTATGTACGGTTCA 57.256 39.130 0.00 0.00 0.00 3.18
2642 6115 5.334724 AGGTAAAGGTATGTACGGTTCAG 57.665 43.478 0.00 0.00 0.00 3.02
2643 6116 4.774200 AGGTAAAGGTATGTACGGTTCAGT 59.226 41.667 0.00 0.00 0.00 3.41
2644 6117 4.866486 GGTAAAGGTATGTACGGTTCAGTG 59.134 45.833 0.00 0.00 0.00 3.66
2645 6118 3.604875 AAGGTATGTACGGTTCAGTGG 57.395 47.619 0.00 0.00 0.00 4.00
2646 6119 1.206371 AGGTATGTACGGTTCAGTGGC 59.794 52.381 0.00 0.00 0.00 5.01
2647 6120 1.066716 GGTATGTACGGTTCAGTGGCA 60.067 52.381 0.00 0.00 0.00 4.92
2648 6121 2.613474 GGTATGTACGGTTCAGTGGCAA 60.613 50.000 0.00 0.00 0.00 4.52
2649 6122 2.489938 ATGTACGGTTCAGTGGCAAT 57.510 45.000 0.00 0.00 0.00 3.56
2650 6123 3.620427 ATGTACGGTTCAGTGGCAATA 57.380 42.857 0.00 0.00 0.00 1.90
2651 6124 3.620427 TGTACGGTTCAGTGGCAATAT 57.380 42.857 0.00 0.00 0.00 1.28
2652 6125 3.527533 TGTACGGTTCAGTGGCAATATC 58.472 45.455 0.00 0.00 0.00 1.63
2653 6126 2.038387 ACGGTTCAGTGGCAATATCC 57.962 50.000 0.00 0.00 0.00 2.59
2654 6127 1.280710 ACGGTTCAGTGGCAATATCCA 59.719 47.619 0.00 0.00 0.00 3.41
2719 6192 3.223157 CGCGCTAAAACAAGTTTACAGG 58.777 45.455 5.56 0.00 31.63 4.00
2751 6226 0.320421 ACTTTTAGCGCGCCAGAGAA 60.320 50.000 30.33 13.86 0.00 2.87
2821 6306 1.632046 GCCGCGCTAAACTACAGCAA 61.632 55.000 5.56 0.00 39.04 3.91
2822 6307 1.006832 CCGCGCTAAACTACAGCAAT 58.993 50.000 5.56 0.00 39.04 3.56
2862 6360 6.237384 GCTTGCAATATGTTCATTTTGAGACG 60.237 38.462 16.03 0.00 0.00 4.18
2867 6366 9.669353 GCAATATGTTCATTTTGAGACGATATT 57.331 29.630 16.03 0.00 0.00 1.28
2956 6506 6.407639 CCACATCATCATCCAACCAAATTCAT 60.408 38.462 0.00 0.00 0.00 2.57
3000 6572 2.112380 TGGCACATCAACGATCATGT 57.888 45.000 0.00 0.00 33.29 3.21
3021 6593 3.033909 TCACATCCTCATCATCGTCCTT 58.966 45.455 0.00 0.00 0.00 3.36
3050 6622 3.308401 TCCGATTCTTCATCCTCATCCA 58.692 45.455 0.00 0.00 0.00 3.41
3117 6689 0.543410 TGGGGAGCTCGAAAGGTGTA 60.543 55.000 7.83 0.00 32.07 2.90
3135 6707 3.614616 GTGTAGGCAAGATCTTCAACGAG 59.385 47.826 4.57 0.00 0.00 4.18
3157 6732 2.107366 TCATGCGAAGGTATGTGAGGA 58.893 47.619 0.00 0.00 37.50 3.71
3158 6733 2.101415 TCATGCGAAGGTATGTGAGGAG 59.899 50.000 0.00 0.00 37.50 3.69
3159 6734 0.824109 TGCGAAGGTATGTGAGGAGG 59.176 55.000 0.00 0.00 0.00 4.30
3249 6869 4.368003 CATGCCTCCCATGCCTTT 57.632 55.556 0.00 0.00 44.34 3.11
3279 6917 2.037847 AAAGCCACCCATGCCTCC 59.962 61.111 0.00 0.00 0.00 4.30
3280 6918 3.607084 AAAGCCACCCATGCCTCCC 62.607 63.158 0.00 0.00 0.00 4.30
3282 6920 4.380945 GCCACCCATGCCTCCCAA 62.381 66.667 0.00 0.00 0.00 4.12
3283 6921 2.043652 CCACCCATGCCTCCCAAG 60.044 66.667 0.00 0.00 0.00 3.61
3284 6922 2.757099 CACCCATGCCTCCCAAGC 60.757 66.667 0.00 0.00 0.00 4.01
3285 6923 4.066139 ACCCATGCCTCCCAAGCC 62.066 66.667 0.00 0.00 0.00 4.35
3287 6925 4.431131 CCATGCCTCCCAAGCCGT 62.431 66.667 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.637273 AGGGAGGTGCCGGTGAAC 61.637 66.667 1.90 0.00 37.63 3.18
16 17 3.636231 CAGGGAGGTGCCGGTGAA 61.636 66.667 1.90 0.00 37.63 3.18
17 18 4.631740 TCAGGGAGGTGCCGGTGA 62.632 66.667 1.90 0.00 37.63 4.02
18 19 3.636231 TTCAGGGAGGTGCCGGTG 61.636 66.667 1.90 0.00 37.63 4.94
19 20 3.637273 GTTCAGGGAGGTGCCGGT 61.637 66.667 1.90 0.00 37.63 5.28
20 21 4.410400 GGTTCAGGGAGGTGCCGG 62.410 72.222 0.00 0.00 37.63 6.13
21 22 4.760047 CGGTTCAGGGAGGTGCCG 62.760 72.222 0.00 0.00 37.63 5.69
22 23 4.410400 CCGGTTCAGGGAGGTGCC 62.410 72.222 0.00 0.00 0.00 5.01
23 24 1.833787 TTACCGGTTCAGGGAGGTGC 61.834 60.000 15.04 0.00 37.57 5.01
24 25 0.688487 TTTACCGGTTCAGGGAGGTG 59.312 55.000 15.04 0.00 37.57 4.00
25 26 1.437397 TTTTACCGGTTCAGGGAGGT 58.563 50.000 15.04 0.00 40.52 3.85
26 27 2.224695 ACTTTTTACCGGTTCAGGGAGG 60.225 50.000 15.04 0.00 35.02 4.30
27 28 2.812011 CACTTTTTACCGGTTCAGGGAG 59.188 50.000 15.04 6.63 35.02 4.30
28 29 2.487625 CCACTTTTTACCGGTTCAGGGA 60.488 50.000 15.04 0.00 35.02 4.20
29 30 1.883926 CCACTTTTTACCGGTTCAGGG 59.116 52.381 15.04 4.73 35.02 4.45
30 31 2.578786 ACCACTTTTTACCGGTTCAGG 58.421 47.619 15.04 8.37 37.30 3.86
31 32 4.356289 CAAACCACTTTTTACCGGTTCAG 58.644 43.478 15.04 6.43 40.84 3.02
32 33 3.429135 GCAAACCACTTTTTACCGGTTCA 60.429 43.478 15.04 0.00 40.84 3.18
33 34 3.117794 GCAAACCACTTTTTACCGGTTC 58.882 45.455 15.04 0.00 40.84 3.62
34 35 2.479901 CGCAAACCACTTTTTACCGGTT 60.480 45.455 15.04 0.00 43.55 4.44
35 36 1.065851 CGCAAACCACTTTTTACCGGT 59.934 47.619 13.98 13.98 0.00 5.28
36 37 1.065851 ACGCAAACCACTTTTTACCGG 59.934 47.619 0.00 0.00 0.00 5.28
37 38 2.478547 ACGCAAACCACTTTTTACCG 57.521 45.000 0.00 0.00 0.00 4.02
38 39 3.117794 GGAACGCAAACCACTTTTTACC 58.882 45.455 0.00 0.00 0.00 2.85
39 40 4.036567 AGGAACGCAAACCACTTTTTAC 57.963 40.909 0.00 0.00 0.00 2.01
40 41 4.722361 AAGGAACGCAAACCACTTTTTA 57.278 36.364 0.00 0.00 0.00 1.52
41 42 3.603158 AAGGAACGCAAACCACTTTTT 57.397 38.095 0.00 0.00 0.00 1.94
42 43 3.603158 AAAGGAACGCAAACCACTTTT 57.397 38.095 0.00 0.00 0.00 2.27
43 44 3.258228 CAAAAGGAACGCAAACCACTTT 58.742 40.909 0.00 0.00 0.00 2.66
44 45 2.418060 CCAAAAGGAACGCAAACCACTT 60.418 45.455 0.00 0.00 0.00 3.16
45 46 1.136110 CCAAAAGGAACGCAAACCACT 59.864 47.619 0.00 0.00 0.00 4.00
46 47 1.566404 CCAAAAGGAACGCAAACCAC 58.434 50.000 0.00 0.00 0.00 4.16
47 48 0.179097 GCCAAAAGGAACGCAAACCA 60.179 50.000 0.00 0.00 0.00 3.67
48 49 0.104120 AGCCAAAAGGAACGCAAACC 59.896 50.000 0.00 0.00 0.00 3.27
49 50 1.487482 GAGCCAAAAGGAACGCAAAC 58.513 50.000 0.00 0.00 0.00 2.93
50 51 0.387565 GGAGCCAAAAGGAACGCAAA 59.612 50.000 0.00 0.00 0.00 3.68
51 52 0.753479 TGGAGCCAAAAGGAACGCAA 60.753 50.000 0.00 0.00 0.00 4.85
52 53 0.753479 TTGGAGCCAAAAGGAACGCA 60.753 50.000 0.00 0.00 32.44 5.24
53 54 0.039165 CTTGGAGCCAAAAGGAACGC 60.039 55.000 3.24 0.00 35.33 4.84
54 55 0.598065 CCTTGGAGCCAAAAGGAACG 59.402 55.000 3.24 0.00 44.93 3.95
55 56 0.969149 CCCTTGGAGCCAAAAGGAAC 59.031 55.000 8.52 0.00 44.93 3.62
56 57 0.560688 ACCCTTGGAGCCAAAAGGAA 59.439 50.000 19.48 0.00 44.93 3.36
57 58 0.560688 AACCCTTGGAGCCAAAAGGA 59.439 50.000 19.48 0.00 44.93 3.36
58 59 2.302587 TAACCCTTGGAGCCAAAAGG 57.697 50.000 13.66 13.66 42.29 3.11
59 60 3.701664 AGATAACCCTTGGAGCCAAAAG 58.298 45.455 3.24 0.55 35.33 2.27
60 61 3.825908 AGATAACCCTTGGAGCCAAAA 57.174 42.857 3.24 0.00 35.33 2.44
61 62 4.938575 TTAGATAACCCTTGGAGCCAAA 57.061 40.909 3.24 0.00 35.33 3.28
62 63 4.141251 GGATTAGATAACCCTTGGAGCCAA 60.141 45.833 1.47 1.47 0.00 4.52
63 64 3.394606 GGATTAGATAACCCTTGGAGCCA 59.605 47.826 0.00 0.00 0.00 4.75
64 65 3.244946 GGGATTAGATAACCCTTGGAGCC 60.245 52.174 0.00 0.00 40.39 4.70
65 66 3.394606 TGGGATTAGATAACCCTTGGAGC 59.605 47.826 0.00 0.00 43.59 4.70
66 67 5.646692 TTGGGATTAGATAACCCTTGGAG 57.353 43.478 0.00 0.00 43.59 3.86
67 68 6.410222 TTTTGGGATTAGATAACCCTTGGA 57.590 37.500 0.00 0.00 43.59 3.53
68 69 7.014615 CAGATTTTGGGATTAGATAACCCTTGG 59.985 40.741 0.00 0.00 43.59 3.61
69 70 7.779798 TCAGATTTTGGGATTAGATAACCCTTG 59.220 37.037 0.00 0.00 43.59 3.61
70 71 7.882755 TCAGATTTTGGGATTAGATAACCCTT 58.117 34.615 0.00 0.00 43.59 3.95
71 72 7.129504 ACTCAGATTTTGGGATTAGATAACCCT 59.870 37.037 0.00 0.00 43.59 4.34
72 73 7.290813 ACTCAGATTTTGGGATTAGATAACCC 58.709 38.462 0.00 0.00 43.51 4.11
73 74 7.171678 CGACTCAGATTTTGGGATTAGATAACC 59.828 40.741 0.00 0.00 0.00 2.85
74 75 7.926555 TCGACTCAGATTTTGGGATTAGATAAC 59.073 37.037 0.00 0.00 0.00 1.89
75 76 7.926555 GTCGACTCAGATTTTGGGATTAGATAA 59.073 37.037 8.70 0.00 0.00 1.75
76 77 7.434492 GTCGACTCAGATTTTGGGATTAGATA 58.566 38.462 8.70 0.00 0.00 1.98
77 78 6.284459 GTCGACTCAGATTTTGGGATTAGAT 58.716 40.000 8.70 0.00 0.00 1.98
78 79 5.395324 GGTCGACTCAGATTTTGGGATTAGA 60.395 44.000 16.46 0.00 0.00 2.10
79 80 4.811557 GGTCGACTCAGATTTTGGGATTAG 59.188 45.833 16.46 0.00 0.00 1.73
80 81 4.224147 TGGTCGACTCAGATTTTGGGATTA 59.776 41.667 16.46 0.00 0.00 1.75
81 82 3.009033 TGGTCGACTCAGATTTTGGGATT 59.991 43.478 16.46 0.00 0.00 3.01
82 83 2.571653 TGGTCGACTCAGATTTTGGGAT 59.428 45.455 16.46 0.00 0.00 3.85
83 84 1.974957 TGGTCGACTCAGATTTTGGGA 59.025 47.619 16.46 0.00 0.00 4.37
84 85 2.472695 TGGTCGACTCAGATTTTGGG 57.527 50.000 16.46 0.00 0.00 4.12
85 86 4.697352 AGAATTGGTCGACTCAGATTTTGG 59.303 41.667 16.46 0.00 0.00 3.28
86 87 5.180117 ACAGAATTGGTCGACTCAGATTTTG 59.820 40.000 16.46 15.77 0.00 2.44
87 88 5.308825 ACAGAATTGGTCGACTCAGATTTT 58.691 37.500 16.46 3.71 0.00 1.82
88 89 4.899502 ACAGAATTGGTCGACTCAGATTT 58.100 39.130 16.46 7.00 0.00 2.17
89 90 4.543590 ACAGAATTGGTCGACTCAGATT 57.456 40.909 16.46 10.19 0.00 2.40
90 91 4.543590 AACAGAATTGGTCGACTCAGAT 57.456 40.909 16.46 4.69 0.00 2.90
91 92 5.243060 TCTTAACAGAATTGGTCGACTCAGA 59.757 40.000 16.46 0.96 0.00 3.27
92 93 5.470368 TCTTAACAGAATTGGTCGACTCAG 58.530 41.667 16.46 4.49 0.00 3.35
93 94 5.462530 TCTTAACAGAATTGGTCGACTCA 57.537 39.130 16.46 9.06 0.00 3.41
94 95 5.869888 ACATCTTAACAGAATTGGTCGACTC 59.130 40.000 16.46 4.89 30.76 3.36
95 96 5.639506 CACATCTTAACAGAATTGGTCGACT 59.360 40.000 16.46 0.00 30.76 4.18
96 97 5.671329 GCACATCTTAACAGAATTGGTCGAC 60.671 44.000 7.13 7.13 30.76 4.20
97 98 4.391830 GCACATCTTAACAGAATTGGTCGA 59.608 41.667 0.00 0.00 30.76 4.20
98 99 4.154015 TGCACATCTTAACAGAATTGGTCG 59.846 41.667 0.00 0.00 30.76 4.79
99 100 5.393962 GTGCACATCTTAACAGAATTGGTC 58.606 41.667 13.17 0.00 30.76 4.02
100 101 4.218417 GGTGCACATCTTAACAGAATTGGT 59.782 41.667 20.43 0.00 30.76 3.67
101 102 4.672542 CGGTGCACATCTTAACAGAATTGG 60.673 45.833 20.43 0.00 30.76 3.16
102 103 4.406069 CGGTGCACATCTTAACAGAATTG 58.594 43.478 20.43 0.00 30.76 2.32
103 104 3.440173 CCGGTGCACATCTTAACAGAATT 59.560 43.478 20.43 0.00 30.76 2.17
104 105 3.009723 CCGGTGCACATCTTAACAGAAT 58.990 45.455 20.43 0.00 30.76 2.40
105 106 2.422597 CCGGTGCACATCTTAACAGAA 58.577 47.619 20.43 0.00 30.76 3.02
106 107 1.943968 GCCGGTGCACATCTTAACAGA 60.944 52.381 20.43 0.00 37.47 3.41
107 108 0.447801 GCCGGTGCACATCTTAACAG 59.552 55.000 20.43 0.00 37.47 3.16
108 109 0.958382 GGCCGGTGCACATCTTAACA 60.958 55.000 20.43 0.00 40.13 2.41
109 110 1.800681 GGCCGGTGCACATCTTAAC 59.199 57.895 20.43 0.00 40.13 2.01
110 111 1.743623 CGGCCGGTGCACATCTTAA 60.744 57.895 20.10 0.00 40.13 1.85
111 112 2.125310 CGGCCGGTGCACATCTTA 60.125 61.111 20.10 0.00 40.13 2.10
112 113 3.842925 AACGGCCGGTGCACATCTT 62.843 57.895 31.76 8.20 40.13 2.40
113 114 4.329545 AACGGCCGGTGCACATCT 62.330 61.111 31.76 0.57 40.13 2.90
114 115 4.101790 CAACGGCCGGTGCACATC 62.102 66.667 33.15 6.43 40.13 3.06
123 124 2.343163 TTTTTGAGGTGCAACGGCCG 62.343 55.000 26.86 26.86 40.13 6.13
124 125 1.439644 TTTTTGAGGTGCAACGGCC 59.560 52.632 0.00 0.00 40.13 6.13
187 188 2.834638 AGTTGCATCTGCCCCTTTAT 57.165 45.000 0.00 0.00 41.18 1.40
198 199 6.441093 TTGATGGTCAAGATTAGTTGCATC 57.559 37.500 0.00 0.00 31.83 3.91
204 205 4.702131 GCTGGTTTGATGGTCAAGATTAGT 59.298 41.667 0.00 0.00 37.70 2.24
392 393 5.176774 TGAAACTAGAAATGTGTACGTGCAG 59.823 40.000 6.58 0.00 0.00 4.41
396 397 8.333186 GTTTCTTGAAACTAGAAATGTGTACGT 58.667 33.333 16.31 0.00 41.95 3.57
398 399 9.434559 GTGTTTCTTGAAACTAGAAATGTGTAC 57.565 33.333 21.81 7.95 41.95 2.90
425 427 2.331809 CTGCTTCAAGCGGTTTTACC 57.668 50.000 10.38 0.00 46.26 2.85
439 441 2.282745 GCCAGCCCAGTTCTGCTT 60.283 61.111 0.00 0.00 35.12 3.91
443 445 1.109323 GTGTTTGCCAGCCCAGTTCT 61.109 55.000 0.00 0.00 0.00 3.01
444 446 1.363807 GTGTTTGCCAGCCCAGTTC 59.636 57.895 0.00 0.00 0.00 3.01
445 447 0.975040 TTGTGTTTGCCAGCCCAGTT 60.975 50.000 0.00 0.00 0.00 3.16
447 449 1.067916 GTTGTGTTTGCCAGCCCAG 59.932 57.895 0.00 0.00 0.00 4.45
448 450 1.260538 TTGTTGTGTTTGCCAGCCCA 61.261 50.000 0.00 0.00 0.00 5.36
449 451 0.809636 GTTGTTGTGTTTGCCAGCCC 60.810 55.000 0.00 0.00 0.00 5.19
453 483 2.028130 CCCTAGTTGTTGTGTTTGCCA 58.972 47.619 0.00 0.00 0.00 4.92
471 501 3.042871 TCACGTACAAACCACATACCC 57.957 47.619 0.00 0.00 0.00 3.69
472 502 3.808726 TGTTCACGTACAAACCACATACC 59.191 43.478 0.00 0.00 0.00 2.73
502 532 4.159693 TCTTCGCTCCTAGCAAAGAATACA 59.840 41.667 0.00 0.00 40.91 2.29
574 604 4.209703 GCACACAATTGATTCTTGTTGGTG 59.790 41.667 13.59 0.00 34.69 4.17
578 608 8.836268 AATATTGCACACAATTGATTCTTGTT 57.164 26.923 13.59 0.00 44.21 2.83
636 668 8.784043 GTGAAGACCTTGTTGTAATAAATCAGT 58.216 33.333 0.00 0.00 0.00 3.41
787 851 2.030007 TGGCTATTCAAAGTGCTTGCAC 60.030 45.455 16.98 16.98 34.76 4.57
789 853 2.489329 TCTGGCTATTCAAAGTGCTTGC 59.511 45.455 0.00 0.00 34.76 4.01
793 857 2.991250 TCCTCTGGCTATTCAAAGTGC 58.009 47.619 0.00 0.00 0.00 4.40
889 2140 9.076781 AGATGGTCAATGATCTATCTATATCCG 57.923 37.037 8.88 0.00 0.00 4.18
893 2144 9.194972 GTGGAGATGGTCAATGATCTATCTATA 57.805 37.037 10.02 3.21 0.00 1.31
894 2145 7.900246 AGTGGAGATGGTCAATGATCTATCTAT 59.100 37.037 10.02 0.00 0.00 1.98
896 2147 6.083383 AGTGGAGATGGTCAATGATCTATCT 58.917 40.000 9.89 9.89 0.00 1.98
897 2148 6.357579 AGTGGAGATGGTCAATGATCTATC 57.642 41.667 0.00 0.00 0.00 2.08
898 2149 6.070881 GCTAGTGGAGATGGTCAATGATCTAT 60.071 42.308 0.00 0.00 0.00 1.98
899 2150 5.244851 GCTAGTGGAGATGGTCAATGATCTA 59.755 44.000 0.00 0.00 0.00 1.98
900 2151 4.040217 GCTAGTGGAGATGGTCAATGATCT 59.960 45.833 0.00 0.00 0.00 2.75
901 2152 4.040217 AGCTAGTGGAGATGGTCAATGATC 59.960 45.833 0.00 0.00 0.00 2.92
903 2154 3.133542 CAGCTAGTGGAGATGGTCAATGA 59.866 47.826 0.00 0.00 37.96 2.57
904 2155 3.118482 ACAGCTAGTGGAGATGGTCAATG 60.118 47.826 0.00 0.00 46.38 2.82
905 2156 3.110705 ACAGCTAGTGGAGATGGTCAAT 58.889 45.455 0.00 0.00 46.38 2.57
906 2157 2.540383 ACAGCTAGTGGAGATGGTCAA 58.460 47.619 0.00 0.00 46.38 3.18
920 2194 4.397103 CCAGAAATGCAGATCAAACAGCTA 59.603 41.667 0.00 0.00 0.00 3.32
952 2236 3.303135 TCGACTTCGGCTGCTGGT 61.303 61.111 8.89 0.00 40.29 4.00
1234 3952 2.594962 CGACAAGCTTGCCGTCGTT 61.595 57.895 24.76 5.08 45.59 3.85
1377 4756 3.731653 GAAGCTCTGCTCCTCGGCC 62.732 68.421 0.00 0.00 38.25 6.13
1385 4767 0.320247 CACGTCAAGGAAGCTCTGCT 60.320 55.000 0.00 0.00 42.56 4.24
1532 4914 4.736896 GGTCGGCGGCTTCGAACT 62.737 66.667 12.73 0.00 40.74 3.01
1667 5052 4.069232 CGAAGAGGCTGGGCGTCA 62.069 66.667 13.34 0.00 44.54 4.35
1710 5095 3.494254 TGTGCCCCCGTGAAGGTT 61.494 61.111 0.00 0.00 38.74 3.50
2013 5398 4.576873 ACGTAGTCATCGTCAATCATCTCT 59.423 41.667 0.00 0.00 29.74 3.10
2091 5555 0.035725 CTGAGATCACCAGGCTTGCA 60.036 55.000 0.00 0.00 0.00 4.08
2094 5558 0.917533 ATGCTGAGATCACCAGGCTT 59.082 50.000 14.42 5.34 32.51 4.35
2109 5573 4.592192 CCGATCCGCGTCCATGCT 62.592 66.667 4.92 0.00 38.67 3.79
2281 5745 0.036164 TCCAACCCATGAAGACACCG 59.964 55.000 0.00 0.00 0.00 4.94
2283 5747 2.749621 GTCATCCAACCCATGAAGACAC 59.250 50.000 0.00 0.00 31.98 3.67
2285 5749 3.071874 TGTCATCCAACCCATGAAGAC 57.928 47.619 0.00 0.00 31.98 3.01
2286 5750 3.623703 CATGTCATCCAACCCATGAAGA 58.376 45.455 0.00 0.00 37.47 2.87
2384 5855 9.566331 TGGGACCAAATTATATCTCATCTAGAT 57.434 33.333 0.00 0.00 46.95 1.98
2385 5856 8.972662 TGGGACCAAATTATATCTCATCTAGA 57.027 34.615 0.00 0.00 39.02 2.43
2388 5859 8.672329 TGAATGGGACCAAATTATATCTCATCT 58.328 33.333 0.00 0.00 30.88 2.90
2389 5860 8.734386 GTGAATGGGACCAAATTATATCTCATC 58.266 37.037 0.00 0.00 30.88 2.92
2390 5861 8.226810 TGTGAATGGGACCAAATTATATCTCAT 58.773 33.333 0.00 0.00 33.60 2.90
2391 5862 7.581814 TGTGAATGGGACCAAATTATATCTCA 58.418 34.615 0.00 0.00 0.00 3.27
2392 5863 8.641498 ATGTGAATGGGACCAAATTATATCTC 57.359 34.615 0.00 0.00 0.00 2.75
2393 5864 9.438163 AAATGTGAATGGGACCAAATTATATCT 57.562 29.630 0.00 0.00 0.00 1.98
2399 5870 7.986889 GCTATAAAATGTGAATGGGACCAAATT 59.013 33.333 0.00 0.00 0.00 1.82
2400 5871 7.418942 GGCTATAAAATGTGAATGGGACCAAAT 60.419 37.037 0.00 0.00 0.00 2.32
2401 5872 6.127196 GGCTATAAAATGTGAATGGGACCAAA 60.127 38.462 0.00 0.00 0.00 3.28
2402 5873 5.362430 GGCTATAAAATGTGAATGGGACCAA 59.638 40.000 0.00 0.00 0.00 3.67
2403 5874 4.892934 GGCTATAAAATGTGAATGGGACCA 59.107 41.667 0.00 0.00 0.00 4.02
2404 5875 4.892934 TGGCTATAAAATGTGAATGGGACC 59.107 41.667 0.00 0.00 0.00 4.46
2405 5876 6.655078 ATGGCTATAAAATGTGAATGGGAC 57.345 37.500 0.00 0.00 0.00 4.46
2406 5877 8.774546 TTAATGGCTATAAAATGTGAATGGGA 57.225 30.769 0.00 0.00 0.00 4.37
2430 5901 9.219603 ACACACGCATCTTATAGCATAATATTT 57.780 29.630 0.00 0.00 0.00 1.40
2431 5902 8.659491 CACACACGCATCTTATAGCATAATATT 58.341 33.333 0.00 0.00 0.00 1.28
2432 5903 7.201556 GCACACACGCATCTTATAGCATAATAT 60.202 37.037 0.00 0.00 0.00 1.28
2433 5904 6.090763 GCACACACGCATCTTATAGCATAATA 59.909 38.462 0.00 0.00 0.00 0.98
2434 5905 5.106948 GCACACACGCATCTTATAGCATAAT 60.107 40.000 0.00 0.00 0.00 1.28
2435 5906 4.211164 GCACACACGCATCTTATAGCATAA 59.789 41.667 0.00 0.00 0.00 1.90
2436 5907 3.740832 GCACACACGCATCTTATAGCATA 59.259 43.478 0.00 0.00 0.00 3.14
2437 5908 2.545526 GCACACACGCATCTTATAGCAT 59.454 45.455 0.00 0.00 0.00 3.79
2438 5909 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
2439 5910 2.033407 CAGCACACACGCATCTTATAGC 60.033 50.000 0.00 0.00 0.00 2.97
2440 5911 3.243877 GTCAGCACACACGCATCTTATAG 59.756 47.826 0.00 0.00 0.00 1.31
2441 5912 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
2442 5913 2.002586 GTCAGCACACACGCATCTTAT 58.997 47.619 0.00 0.00 0.00 1.73
2443 5914 1.428448 GTCAGCACACACGCATCTTA 58.572 50.000 0.00 0.00 0.00 2.10
2444 5915 1.560004 CGTCAGCACACACGCATCTT 61.560 55.000 0.00 0.00 0.00 2.40
2445 5916 2.023771 CGTCAGCACACACGCATCT 61.024 57.895 0.00 0.00 0.00 2.90
2446 5917 2.310233 ACGTCAGCACACACGCATC 61.310 57.895 0.00 0.00 39.73 3.91
2447 5918 2.280119 ACGTCAGCACACACGCAT 60.280 55.556 0.00 0.00 39.73 4.73
2448 5919 3.261216 CACGTCAGCACACACGCA 61.261 61.111 0.00 0.00 39.73 5.24
2449 5920 4.000557 CCACGTCAGCACACACGC 62.001 66.667 0.00 0.00 39.73 5.34
2450 5921 3.337889 CCCACGTCAGCACACACG 61.338 66.667 0.00 0.00 41.90 4.49
2451 5922 1.373590 AAACCCACGTCAGCACACAC 61.374 55.000 0.00 0.00 0.00 3.82
2452 5923 0.678366 AAAACCCACGTCAGCACACA 60.678 50.000 0.00 0.00 0.00 3.72
2453 5924 1.301423 TAAAACCCACGTCAGCACAC 58.699 50.000 0.00 0.00 0.00 3.82
2454 5925 2.147958 GATAAAACCCACGTCAGCACA 58.852 47.619 0.00 0.00 0.00 4.57
2455 5926 2.159627 CAGATAAAACCCACGTCAGCAC 59.840 50.000 0.00 0.00 0.00 4.40
2456 5927 2.224426 ACAGATAAAACCCACGTCAGCA 60.224 45.455 0.00 0.00 0.00 4.41
2457 5928 2.423577 ACAGATAAAACCCACGTCAGC 58.576 47.619 0.00 0.00 0.00 4.26
2458 5929 4.315803 AGAACAGATAAAACCCACGTCAG 58.684 43.478 0.00 0.00 0.00 3.51
2459 5930 4.345859 AGAACAGATAAAACCCACGTCA 57.654 40.909 0.00 0.00 0.00 4.35
2460 5931 6.980051 ATAAGAACAGATAAAACCCACGTC 57.020 37.500 0.00 0.00 0.00 4.34
2461 5932 7.754851 AAATAAGAACAGATAAAACCCACGT 57.245 32.000 0.00 0.00 0.00 4.49
2462 5933 8.293867 TGAAAATAAGAACAGATAAAACCCACG 58.706 33.333 0.00 0.00 0.00 4.94
2463 5934 9.974980 TTGAAAATAAGAACAGATAAAACCCAC 57.025 29.630 0.00 0.00 0.00 4.61
2475 5946 9.950680 GTCTCATTCACTTTGAAAATAAGAACA 57.049 29.630 0.00 0.00 40.12 3.18
2476 5947 9.399403 GGTCTCATTCACTTTGAAAATAAGAAC 57.601 33.333 0.00 0.00 40.12 3.01
2477 5948 9.130661 TGGTCTCATTCACTTTGAAAATAAGAA 57.869 29.630 0.00 0.00 40.12 2.52
2478 5949 8.690203 TGGTCTCATTCACTTTGAAAATAAGA 57.310 30.769 0.00 0.00 40.12 2.10
2479 5950 9.748708 TTTGGTCTCATTCACTTTGAAAATAAG 57.251 29.630 0.00 0.00 40.12 1.73
2544 6015 8.962679 GGTTGTAGGAAAAACATCCAACATATA 58.037 33.333 0.00 0.00 42.27 0.86
2545 6016 7.673926 AGGTTGTAGGAAAAACATCCAACATAT 59.326 33.333 0.00 0.00 42.27 1.78
2546 6017 7.007723 AGGTTGTAGGAAAAACATCCAACATA 58.992 34.615 0.00 0.00 42.27 2.29
2547 6018 5.838521 AGGTTGTAGGAAAAACATCCAACAT 59.161 36.000 0.00 0.00 42.27 2.71
2548 6019 5.205056 AGGTTGTAGGAAAAACATCCAACA 58.795 37.500 0.00 0.00 42.27 3.33
2549 6020 5.784578 AGGTTGTAGGAAAAACATCCAAC 57.215 39.130 6.20 0.00 42.27 3.77
2550 6021 7.899648 TTAAGGTTGTAGGAAAAACATCCAA 57.100 32.000 6.20 0.00 42.27 3.53
2561 6032 5.642063 CGCAAGAAAGATTAAGGTTGTAGGA 59.358 40.000 0.00 0.00 43.02 2.94
2567 6038 5.508994 CCAAACCGCAAGAAAGATTAAGGTT 60.509 40.000 0.00 0.00 41.85 3.50
2575 6048 0.467290 AGGCCAAACCGCAAGAAAGA 60.467 50.000 5.01 0.00 46.52 2.52
2621 6094 4.866486 CACTGAACCGTACATACCTTTACC 59.134 45.833 0.00 0.00 0.00 2.85
2624 6097 3.867216 GCCACTGAACCGTACATACCTTT 60.867 47.826 0.00 0.00 0.00 3.11
2625 6098 2.354403 GCCACTGAACCGTACATACCTT 60.354 50.000 0.00 0.00 0.00 3.50
2626 6099 1.206371 GCCACTGAACCGTACATACCT 59.794 52.381 0.00 0.00 0.00 3.08
2627 6100 1.066716 TGCCACTGAACCGTACATACC 60.067 52.381 0.00 0.00 0.00 2.73
2628 6101 2.373540 TGCCACTGAACCGTACATAC 57.626 50.000 0.00 0.00 0.00 2.39
2629 6102 3.620427 ATTGCCACTGAACCGTACATA 57.380 42.857 0.00 0.00 0.00 2.29
2630 6103 2.489938 ATTGCCACTGAACCGTACAT 57.510 45.000 0.00 0.00 0.00 2.29
2631 6104 3.527533 GATATTGCCACTGAACCGTACA 58.472 45.455 0.00 0.00 0.00 2.90
2632 6105 2.870411 GGATATTGCCACTGAACCGTAC 59.130 50.000 0.00 0.00 0.00 3.67
2633 6106 2.502130 TGGATATTGCCACTGAACCGTA 59.498 45.455 0.00 0.00 31.66 4.02
2634 6107 1.280710 TGGATATTGCCACTGAACCGT 59.719 47.619 0.00 0.00 31.66 4.83
2635 6108 2.036958 TGGATATTGCCACTGAACCG 57.963 50.000 0.00 0.00 31.66 4.44
2656 6129 7.987458 CCTGTTGGAGATGCTCTAAAGTATTTA 59.013 37.037 0.00 0.00 35.80 1.40
2657 6130 6.825721 CCTGTTGGAGATGCTCTAAAGTATTT 59.174 38.462 0.00 0.00 37.58 1.40
2658 6131 6.069963 ACCTGTTGGAGATGCTCTAAAGTATT 60.070 38.462 0.00 0.00 33.06 1.89
2659 6132 5.426833 ACCTGTTGGAGATGCTCTAAAGTAT 59.573 40.000 0.00 0.00 33.06 2.12
2660 6133 4.777896 ACCTGTTGGAGATGCTCTAAAGTA 59.222 41.667 0.00 0.00 33.06 2.24
2661 6134 3.584848 ACCTGTTGGAGATGCTCTAAAGT 59.415 43.478 0.00 0.00 33.06 2.66
2662 6135 3.937706 CACCTGTTGGAGATGCTCTAAAG 59.062 47.826 0.00 0.00 33.06 1.85
2663 6136 3.869912 GCACCTGTTGGAGATGCTCTAAA 60.870 47.826 0.00 0.00 33.06 1.85
2719 6192 3.612423 CGCTAAAAGTTGCTATTTTGGCC 59.388 43.478 17.40 0.00 45.75 5.36
2775 6250 3.111442 GGCGGGCGTGCAATTTTG 61.111 61.111 0.00 0.00 36.28 2.44
2803 6283 1.004927 GATTGCTGTAGTTTAGCGCGG 60.005 52.381 8.83 0.00 44.01 6.46
2893 6418 6.803320 TGTGTCGTGCAACTAAACTATACTAC 59.197 38.462 0.00 0.00 31.75 2.73
2906 6431 2.466870 TTGTTGATGTGTCGTGCAAC 57.533 45.000 0.00 0.00 40.62 4.17
3000 6572 2.670939 AGGACGATGATGAGGATGTGA 58.329 47.619 0.00 0.00 0.00 3.58
3021 6593 2.247699 TGAAGAATCGGAGGAAGGGA 57.752 50.000 0.00 0.00 0.00 4.20
3117 6689 3.791245 GATCTCGTTGAAGATCTTGCCT 58.209 45.455 14.00 0.00 45.45 4.75
3135 6707 3.062763 CCTCACATACCTTCGCATGATC 58.937 50.000 0.00 0.00 0.00 2.92
3157 6732 1.003355 CATGTCTTCCGGTGTGCCT 60.003 57.895 0.00 0.00 0.00 4.75
3158 6733 2.690778 GCATGTCTTCCGGTGTGCC 61.691 63.158 0.00 0.00 0.00 5.01
3159 6734 2.870372 GCATGTCTTCCGGTGTGC 59.130 61.111 0.00 0.48 0.00 4.57
3279 6917 1.819632 GCTACCATGGACGGCTTGG 60.820 63.158 21.47 8.97 36.56 3.61
3280 6918 0.811616 GAGCTACCATGGACGGCTTG 60.812 60.000 21.47 0.00 33.13 4.01
3281 6919 1.522569 GAGCTACCATGGACGGCTT 59.477 57.895 21.47 8.93 33.13 4.35
3282 6920 2.435693 GGAGCTACCATGGACGGCT 61.436 63.158 21.47 22.45 38.79 5.52
3283 6921 2.109181 GGAGCTACCATGGACGGC 59.891 66.667 21.47 18.19 38.79 5.68
3284 6922 1.672854 TTCGGAGCTACCATGGACGG 61.673 60.000 21.47 8.82 38.90 4.79
3285 6923 0.249073 CTTCGGAGCTACCATGGACG 60.249 60.000 21.47 9.78 38.90 4.79
3286 6924 0.530870 GCTTCGGAGCTACCATGGAC 60.531 60.000 21.47 7.45 45.65 4.02
3287 6925 1.823295 GCTTCGGAGCTACCATGGA 59.177 57.895 21.47 0.67 45.65 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.