Multiple sequence alignment - TraesCS2B01G099800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G099800 chr2B 100.000 4377 0 0 1 4377 58999120 59003496 0.000000e+00 8083.0
1 TraesCS2B01G099800 chr2B 85.821 268 32 4 2346 2608 62175839 62176105 3.330000e-71 279.0
2 TraesCS2B01G099800 chr2B 93.421 76 4 1 3617 3692 306355275 306355349 1.290000e-20 111.0
3 TraesCS2B01G099800 chr2B 87.692 65 7 1 1923 1986 554728751 554728687 1.690000e-09 75.0
4 TraesCS2B01G099800 chr2A 89.221 3182 218 68 304 3418 39006212 39009335 0.000000e+00 3860.0
5 TraesCS2B01G099800 chr2A 90.643 171 15 1 3418 3587 39009484 39009654 4.400000e-55 226.0
6 TraesCS2B01G099800 chr2A 89.209 139 15 0 3587 3725 39122175 39122313 1.620000e-39 174.0
7 TraesCS2B01G099800 chr2A 95.349 43 2 0 2749 2791 39008570 39008612 7.850000e-08 69.4
8 TraesCS2B01G099800 chr2D 89.796 2450 143 44 306 2723 35803269 35805643 0.000000e+00 3040.0
9 TraesCS2B01G099800 chr2D 85.799 676 52 23 2782 3420 35805657 35806325 0.000000e+00 676.0
10 TraesCS2B01G099800 chr2D 85.430 302 43 1 1 302 35802710 35803010 3.290000e-81 313.0
11 TraesCS2B01G099800 chr2D 100.000 33 0 0 2749 2781 35805585 35805617 1.310000e-05 62.1
12 TraesCS2B01G099800 chr3B 99.081 653 5 1 3725 4377 381485878 381485227 0.000000e+00 1171.0
13 TraesCS2B01G099800 chr3B 98.928 653 6 1 3725 4377 547328993 547329644 0.000000e+00 1166.0
14 TraesCS2B01G099800 chr3B 98.928 653 6 1 3725 4377 803532064 803532715 0.000000e+00 1166.0
15 TraesCS2B01G099800 chr3B 87.726 277 27 4 3418 3692 45249503 45249232 2.540000e-82 316.0
16 TraesCS2B01G099800 chr3B 94.413 179 10 0 3243 3421 45249715 45249537 4.310000e-70 276.0
17 TraesCS2B01G099800 chr3B 77.130 223 45 6 275 493 7585242 7585462 1.650000e-24 124.0
18 TraesCS2B01G099800 chr1A 99.081 653 5 1 3725 4377 82082659 82083310 0.000000e+00 1171.0
19 TraesCS2B01G099800 chr6B 98.928 653 6 1 3725 4377 574419585 574418934 0.000000e+00 1166.0
20 TraesCS2B01G099800 chr6B 98.775 653 7 1 3725 4377 54366183 54366834 0.000000e+00 1160.0
21 TraesCS2B01G099800 chr5B 98.775 653 7 1 3725 4377 689879631 689880282 0.000000e+00 1160.0
22 TraesCS2B01G099800 chr5B 98.622 653 8 1 3725 4377 461439433 461440084 0.000000e+00 1155.0
23 TraesCS2B01G099800 chr4B 98.622 653 8 1 3725 4377 338490154 338489503 0.000000e+00 1155.0
24 TraesCS2B01G099800 chr4B 90.253 277 20 4 3418 3692 650470507 650470778 5.380000e-94 355.0
25 TraesCS2B01G099800 chr4B 89.531 277 21 5 3418 3692 650509692 650509962 1.170000e-90 344.0
26 TraesCS2B01G099800 chr4B 94.667 75 3 1 3618 3692 166397439 166397512 9.950000e-22 115.0
27 TraesCS2B01G099800 chr4B 92.105 76 5 1 3617 3692 360673919 360673993 5.990000e-19 106.0
28 TraesCS2B01G099800 chr7B 90.288 278 19 5 3418 3692 646949974 646950246 1.500000e-94 357.0
29 TraesCS2B01G099800 chr7B 90.253 277 20 4 3418 3692 442119894 442120165 5.380000e-94 355.0
30 TraesCS2B01G099800 chr7B 94.886 176 9 0 3243 3418 646949762 646949937 4.310000e-70 276.0
31 TraesCS2B01G099800 chr4A 75.463 216 47 6 274 485 370247790 370247577 2.790000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G099800 chr2B 58999120 59003496 4376 False 8083.000000 8083 100.000000 1 4377 1 chr2B.!!$F1 4376
1 TraesCS2B01G099800 chr2A 39006212 39009654 3442 False 1385.133333 3860 91.737667 304 3587 3 chr2A.!!$F2 3283
2 TraesCS2B01G099800 chr2D 35802710 35806325 3615 False 1022.775000 3040 90.256250 1 3420 4 chr2D.!!$F1 3419
3 TraesCS2B01G099800 chr3B 381485227 381485878 651 True 1171.000000 1171 99.081000 3725 4377 1 chr3B.!!$R1 652
4 TraesCS2B01G099800 chr3B 547328993 547329644 651 False 1166.000000 1166 98.928000 3725 4377 1 chr3B.!!$F2 652
5 TraesCS2B01G099800 chr3B 803532064 803532715 651 False 1166.000000 1166 98.928000 3725 4377 1 chr3B.!!$F3 652
6 TraesCS2B01G099800 chr1A 82082659 82083310 651 False 1171.000000 1171 99.081000 3725 4377 1 chr1A.!!$F1 652
7 TraesCS2B01G099800 chr6B 574418934 574419585 651 True 1166.000000 1166 98.928000 3725 4377 1 chr6B.!!$R1 652
8 TraesCS2B01G099800 chr6B 54366183 54366834 651 False 1160.000000 1160 98.775000 3725 4377 1 chr6B.!!$F1 652
9 TraesCS2B01G099800 chr5B 689879631 689880282 651 False 1160.000000 1160 98.775000 3725 4377 1 chr5B.!!$F2 652
10 TraesCS2B01G099800 chr5B 461439433 461440084 651 False 1155.000000 1155 98.622000 3725 4377 1 chr5B.!!$F1 652
11 TraesCS2B01G099800 chr4B 338489503 338490154 651 True 1155.000000 1155 98.622000 3725 4377 1 chr4B.!!$R1 652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.033504 TCAACGTCCTTGAGCCTCAC 59.966 55.0 0.00 0.0 33.65 3.51 F
1031 1359 0.179181 GAGTACGTCGCGTTCATGGA 60.179 55.0 5.77 0.0 41.54 3.41 F
1380 1708 0.675837 GTAAGAGGGGGTTTGGCGAC 60.676 60.0 0.00 0.0 0.00 5.19 F
2268 2605 0.179137 TCTACTGCGACCAATGCGAG 60.179 55.0 0.00 0.0 34.24 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1447 1775 0.041982 GAGACCCTCCTCACCTTCCT 59.958 60.0 0.00 0.0 33.50 3.36 R
2085 2422 0.533951 AGTCGCAGATCAGCATGTCA 59.466 50.0 10.95 0.0 40.67 3.58 R
2829 3169 0.549469 ATCCCCGGAAATTTAGCCGT 59.451 50.0 14.98 0.0 45.85 5.68 R
3717 4246 0.033109 TTGGCTCCGAGAGAGGATGA 60.033 55.0 0.00 0.0 43.46 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.073437 TCCTTTGAATCCCCTCTTTTTCA 57.927 39.130 0.00 0.00 0.00 2.69
26 27 5.304357 TCCTTTGAATCCCCTCTTTTTCAAC 59.696 40.000 0.00 0.00 37.69 3.18
28 29 3.827722 TGAATCCCCTCTTTTTCAACGT 58.172 40.909 0.00 0.00 0.00 3.99
41 42 0.033504 TCAACGTCCTTGAGCCTCAC 59.966 55.000 0.00 0.00 33.65 3.51
48 49 2.280797 TTGAGCCTCACCGCACAC 60.281 61.111 0.00 0.00 0.00 3.82
56 57 2.137425 CTCACCGCACACGTACCTCA 62.137 60.000 0.00 0.00 37.70 3.86
70 71 5.924254 CACGTACCTCATGTAAGTTTCTTCA 59.076 40.000 0.00 0.00 39.68 3.02
82 83 7.054124 TGTAAGTTTCTTCATTGTCTCCTGTT 58.946 34.615 0.00 0.00 0.00 3.16
83 84 6.382869 AAGTTTCTTCATTGTCTCCTGTTG 57.617 37.500 0.00 0.00 0.00 3.33
95 96 2.317609 CCTGTTGACGCCTCGTTGG 61.318 63.158 0.00 0.00 41.37 3.77
104 105 3.781307 CCTCGTTGGGCGGGATCA 61.781 66.667 0.00 0.00 45.67 2.92
105 106 2.505982 CTCGTTGGGCGGGATCAT 59.494 61.111 0.00 0.00 45.67 2.45
107 108 2.189257 CGTTGGGCGGGATCATCA 59.811 61.111 0.00 0.00 36.85 3.07
111 112 0.550432 TTGGGCGGGATCATCATTGA 59.450 50.000 0.00 0.00 36.00 2.57
118 119 2.797156 CGGGATCATCATTGACTTCGAC 59.203 50.000 0.00 0.00 33.85 4.20
154 155 4.626081 ACACCTGCACTGTCGCCC 62.626 66.667 0.00 0.00 0.00 6.13
178 179 2.248431 GCGGACTGTGTCGTTTGC 59.752 61.111 0.00 0.00 32.65 3.68
180 181 2.935955 GGACTGTGTCGTTTGCCG 59.064 61.111 0.00 0.00 32.65 5.69
191 192 1.083489 CGTTTGCCGGCTCAATCTTA 58.917 50.000 29.70 0.07 0.00 2.10
195 196 0.744414 TGCCGGCTCAATCTTAGTGC 60.744 55.000 29.70 0.00 0.00 4.40
206 207 2.284263 TCTTAGTGCGTCATGCTCAG 57.716 50.000 0.00 0.00 46.63 3.35
214 215 0.799917 CGTCATGCTCAGTCTCCACG 60.800 60.000 0.00 0.00 0.00 4.94
223 224 1.901948 AGTCTCCACGTCGCCTTCA 60.902 57.895 0.00 0.00 0.00 3.02
225 226 0.389948 GTCTCCACGTCGCCTTCATT 60.390 55.000 0.00 0.00 0.00 2.57
226 227 0.389817 TCTCCACGTCGCCTTCATTG 60.390 55.000 0.00 0.00 0.00 2.82
232 233 0.179250 CGTCGCCTTCATTGTTGTCG 60.179 55.000 0.00 0.00 0.00 4.35
236 237 0.951558 GCCTTCATTGTTGTCGGTGT 59.048 50.000 0.00 0.00 0.00 4.16
238 239 2.858260 GCCTTCATTGTTGTCGGTGTTG 60.858 50.000 0.00 0.00 0.00 3.33
245 246 3.462483 TGTTGTCGGTGTTGTAGACAT 57.538 42.857 0.00 0.00 43.34 3.06
261 262 3.196040 CATGACCCATGTCCCCTTG 57.804 57.895 0.00 0.00 41.01 3.61
278 279 1.682451 TTGGCCGCGGCTAATAGAGT 61.682 55.000 45.23 0.00 41.60 3.24
279 280 1.069258 GGCCGCGGCTAATAGAGTT 59.931 57.895 45.23 0.00 41.60 3.01
280 281 0.944788 GGCCGCGGCTAATAGAGTTC 60.945 60.000 45.23 23.69 41.60 3.01
283 284 2.094649 GCCGCGGCTAATAGAGTTCTAT 60.095 50.000 41.71 0.00 38.20 1.98
284 285 3.760537 CCGCGGCTAATAGAGTTCTATC 58.239 50.000 14.67 0.00 38.15 2.08
302 303 9.654663 AGTTCTATCGAATATTTGGTATAAGGC 57.345 33.333 2.78 0.00 0.00 4.35
356 612 5.221481 TGTGAAAACAGGGTATGAAGTCGTA 60.221 40.000 0.00 0.00 0.00 3.43
365 621 7.727186 ACAGGGTATGAAGTCGTATCCTAATAA 59.273 37.037 11.29 0.00 44.92 1.40
387 644 4.467198 AACACTTGTATCCTAACCCTCG 57.533 45.455 0.00 0.00 0.00 4.63
446 704 3.064271 CCGTCATAATAACCCAAACACGG 59.936 47.826 0.00 0.00 38.43 4.94
449 707 5.446741 CGTCATAATAACCCAAACACGGAAG 60.447 44.000 0.00 0.00 0.00 3.46
505 763 1.152819 AGTCGGAGCGCCCATAGTA 60.153 57.895 2.29 0.00 34.14 1.82
506 764 1.007618 GTCGGAGCGCCCATAGTAC 60.008 63.158 2.29 0.00 34.14 2.73
508 766 1.038681 TCGGAGCGCCCATAGTACAA 61.039 55.000 2.29 0.00 34.14 2.41
509 767 0.874607 CGGAGCGCCCATAGTACAAC 60.875 60.000 2.29 0.00 34.14 3.32
510 768 0.532196 GGAGCGCCCATAGTACAACC 60.532 60.000 2.29 0.00 34.14 3.77
524 782 3.094498 AACCCCGGGATGTAGCCC 61.094 66.667 26.32 0.00 45.10 5.19
534 792 1.338769 GGATGTAGCCCAACTCAACGT 60.339 52.381 0.00 0.00 0.00 3.99
578 844 2.568509 TCATGCCTCTGTGATTGTCTGA 59.431 45.455 0.00 0.00 0.00 3.27
586 852 3.129462 TCTGTGATTGTCTGATCCTCGAC 59.871 47.826 0.00 0.00 0.00 4.20
592 859 2.027385 TGTCTGATCCTCGACAGATGG 58.973 52.381 6.72 0.00 43.46 3.51
595 862 1.001924 CTGATCCTCGACAGATGGACG 60.002 57.143 0.00 0.00 36.38 4.79
598 865 2.710902 CCTCGACAGATGGACGGCA 61.711 63.158 0.00 0.00 0.00 5.69
599 866 1.517257 CTCGACAGATGGACGGCAC 60.517 63.158 0.00 0.00 0.00 5.01
616 885 2.614057 GGCACACCTCGGATTAATTCTG 59.386 50.000 0.00 0.00 0.00 3.02
620 889 5.118990 CACACCTCGGATTAATTCTGACAT 58.881 41.667 0.00 0.00 34.70 3.06
689 999 4.451150 GTCGTCGCCATGGCCAGA 62.451 66.667 30.79 22.82 37.98 3.86
761 1074 2.093128 TCCGGCCATCTTCCTACTTTTC 60.093 50.000 2.24 0.00 0.00 2.29
767 1080 5.476945 GGCCATCTTCCTACTTTTCTTTTCA 59.523 40.000 0.00 0.00 0.00 2.69
784 1097 8.980143 TTCTTTTCACGAGATTTTGTTTTCTT 57.020 26.923 0.00 0.00 0.00 2.52
786 1099 9.498307 TCTTTTCACGAGATTTTGTTTTCTTAC 57.502 29.630 0.00 0.00 0.00 2.34
787 1100 8.623310 TTTTCACGAGATTTTGTTTTCTTACC 57.377 30.769 0.00 0.00 0.00 2.85
826 1139 1.059913 CCAGAATCCCCGAGGCTTAT 58.940 55.000 0.00 0.00 0.00 1.73
853 1166 3.000080 CTCGCACGAGGTGTTTCGC 62.000 63.158 12.17 0.00 44.15 4.70
922 1243 3.185797 CCGGAAAAACTCGAGTTTGGTAG 59.814 47.826 36.86 27.44 46.47 3.18
923 1244 3.363673 CGGAAAAACTCGAGTTTGGTAGC 60.364 47.826 36.86 24.38 46.47 3.58
924 1245 3.562557 GGAAAAACTCGAGTTTGGTAGCA 59.437 43.478 36.86 0.00 46.47 3.49
925 1246 4.319549 GGAAAAACTCGAGTTTGGTAGCAG 60.320 45.833 36.86 1.19 46.47 4.24
926 1247 3.470645 AAACTCGAGTTTGGTAGCAGT 57.529 42.857 36.05 14.25 45.55 4.40
975 1299 0.654683 GAAGCATCGCATCTGTGTCC 59.345 55.000 0.00 0.00 0.00 4.02
1031 1359 0.179181 GAGTACGTCGCGTTCATGGA 60.179 55.000 5.77 0.00 41.54 3.41
1217 1545 2.225255 GCAAGAAGTTCCAGCTCTTCAC 59.775 50.000 13.59 1.79 41.46 3.18
1279 1607 2.762234 CGTAGGAAGAGGAGCGCGT 61.762 63.158 8.43 0.00 0.00 6.01
1333 1661 1.876799 AGGAGATCGCTCGTGTGATAG 59.123 52.381 13.07 0.00 42.78 2.08
1360 1688 3.747976 GTGCGGAAAATGGCGGCT 61.748 61.111 11.43 0.00 33.37 5.52
1366 1694 1.459450 GGAAAATGGCGGCTGTAAGA 58.541 50.000 11.43 0.00 34.07 2.10
1371 1699 4.176752 GGCGGCTGTAAGAGGGGG 62.177 72.222 0.00 0.00 34.07 5.40
1377 1705 0.965866 GCTGTAAGAGGGGGTTTGGC 60.966 60.000 0.00 0.00 34.07 4.52
1378 1706 0.676782 CTGTAAGAGGGGGTTTGGCG 60.677 60.000 0.00 0.00 34.07 5.69
1379 1707 1.128809 TGTAAGAGGGGGTTTGGCGA 61.129 55.000 0.00 0.00 0.00 5.54
1380 1708 0.675837 GTAAGAGGGGGTTTGGCGAC 60.676 60.000 0.00 0.00 0.00 5.19
1533 1864 3.055905 GAAGAAAGCGTCGGCGTCG 62.056 63.158 21.39 21.39 46.35 5.12
1573 1904 2.097038 CAAAGCTCTGCGTCTCCCG 61.097 63.158 0.00 0.00 40.40 5.14
1591 1922 4.394712 CGGCGTCTCCCCAAAGCT 62.395 66.667 0.00 0.00 0.00 3.74
1726 2063 3.760684 GGTGCTCATGGACAAGAAAATCT 59.239 43.478 0.00 0.00 36.16 2.40
1728 2065 5.397326 GTGCTCATGGACAAGAAAATCTTC 58.603 41.667 0.00 0.00 33.78 2.87
1759 2096 2.743183 GCCAAGATGTCCTACAAGCGAT 60.743 50.000 0.00 0.00 0.00 4.58
1944 2281 3.606662 AGGTCGCTGTCGCAGTGT 61.607 61.111 16.31 0.15 41.99 3.55
2095 2432 0.388520 CGACTTCGGTGACATGCTGA 60.389 55.000 0.00 0.00 35.37 4.26
2112 2449 4.827087 ATCTGCGACTGCTGCCCG 62.827 66.667 0.00 0.00 43.34 6.13
2268 2605 0.179137 TCTACTGCGACCAATGCGAG 60.179 55.000 0.00 0.00 34.24 5.03
2290 2629 5.162075 AGCGAGAGTGTAAGTACATTCAAC 58.838 41.667 14.21 8.20 43.03 3.18
2323 2662 8.331022 CAAATTACTCCGAGAATCTACAATGTG 58.669 37.037 1.33 0.00 0.00 3.21
2327 2666 4.371786 TCCGAGAATCTACAATGTGCATC 58.628 43.478 0.00 0.00 0.00 3.91
2345 2684 4.976116 TGCATCGAATCAACTACGTAGATG 59.024 41.667 28.74 25.56 37.76 2.90
2487 2826 3.688159 CTGCAAGGGCTGGTTGGC 61.688 66.667 0.00 0.00 41.91 4.52
2507 2846 2.225963 GCAGATCAATGCCTACATCAGC 59.774 50.000 0.00 0.00 40.43 4.26
2613 2952 2.809601 GCGTTCGACGTGCTCCAT 60.810 61.111 0.00 0.00 44.73 3.41
2616 2955 1.006825 CGTTCGACGTGCTCCATGAA 61.007 55.000 0.00 0.00 36.74 2.57
2690 3029 4.162096 TCGTCTTCAACAGAGAGTAAGC 57.838 45.455 0.00 0.00 29.34 3.09
2698 3037 6.101650 TCAACAGAGAGTAAGCAAATCTGA 57.898 37.500 7.45 0.00 39.80 3.27
2707 3046 9.905171 GAGAGTAAGCAAATCTGAATTTTCTTT 57.095 29.630 2.11 0.00 38.64 2.52
2728 3067 9.820725 TTCTTTTCAACATCTCATTTCATTTGT 57.179 25.926 0.00 0.00 0.00 2.83
2731 3070 6.897706 TCAACATCTCATTTCATTTGTGGA 57.102 33.333 0.00 0.00 0.00 4.02
2749 3088 6.000891 TGTGGAAATCTGAATGTCTTTTCG 57.999 37.500 0.00 0.00 0.00 3.46
2750 3089 5.762711 TGTGGAAATCTGAATGTCTTTTCGA 59.237 36.000 0.00 0.00 0.00 3.71
2778 3117 7.883217 TCGTCTTCAACAGAGAGTAAGTAAAT 58.117 34.615 0.00 0.00 29.34 1.40
2829 3169 0.967380 TGTGCAGATCGGAGCTGAGA 60.967 55.000 26.07 9.19 35.39 3.27
2859 3199 1.039233 TCCGGGGATTCTACGTGGTC 61.039 60.000 0.00 0.00 0.00 4.02
2911 3255 4.814294 GCACGCTCAGGTACCCCG 62.814 72.222 8.74 9.19 35.12 5.73
2912 3256 4.143333 CACGCTCAGGTACCCCGG 62.143 72.222 8.74 0.00 35.12 5.73
2933 3277 5.355596 CGGCTACTTGATCATCTTCTTCTT 58.644 41.667 0.00 0.00 0.00 2.52
2980 3336 5.595257 TTGCCTTGCAAATGCTGAATATA 57.405 34.783 18.27 0.00 45.96 0.86
2985 3341 6.129009 GCCTTGCAAATGCTGAATATAAATCG 60.129 38.462 12.16 0.00 42.66 3.34
2989 3345 6.262944 TGCAAATGCTGAATATAAATCGTCCT 59.737 34.615 6.97 0.00 42.66 3.85
3013 3369 2.264794 GTGCAGGGTGTACGGGAG 59.735 66.667 0.00 0.00 0.00 4.30
3098 3454 3.878778 CCTCCTCATAAACCAACTGGAG 58.121 50.000 1.86 0.00 39.26 3.86
3135 3508 4.455877 AGTTTGATCGTCCAAGAATTGTCC 59.544 41.667 0.00 0.00 46.99 4.02
3143 3516 4.530875 GTCCAAGAATTGTCCTCCATGAT 58.469 43.478 0.00 0.00 46.99 2.45
3144 3517 4.578105 GTCCAAGAATTGTCCTCCATGATC 59.422 45.833 0.00 0.00 46.99 2.92
3145 3518 4.227982 TCCAAGAATTGTCCTCCATGATCA 59.772 41.667 0.00 0.00 46.99 2.92
3168 3541 5.784750 TCGTCAGAGCTAAACATTTCATG 57.215 39.130 0.00 0.00 0.00 3.07
3199 3572 0.533978 TGCAGTTGCTTGGCGAGTTA 60.534 50.000 3.19 0.00 42.66 2.24
3291 3664 1.442526 GCCATGAGCCATTCCGACAG 61.443 60.000 0.00 0.00 34.35 3.51
3304 3677 1.371022 CGACAGGATGGAGATCGCG 60.371 63.158 0.00 0.00 43.62 5.87
3359 3732 1.225855 GTGCCACAAGTTCATCGTCA 58.774 50.000 0.00 0.00 0.00 4.35
3364 3740 1.291877 ACAAGTTCATCGTCAGCGCC 61.292 55.000 2.29 0.00 38.14 6.53
3401 3777 5.526479 AGATGAAACATGCTGCTACTATGTG 59.474 40.000 0.00 0.00 35.39 3.21
3402 3778 3.374988 TGAAACATGCTGCTACTATGTGC 59.625 43.478 0.00 0.00 35.39 4.57
3421 3914 5.240891 TGTGCTAGAAATCAAGAGTTCAGG 58.759 41.667 12.10 5.81 37.82 3.86
3422 3915 5.012046 TGTGCTAGAAATCAAGAGTTCAGGA 59.988 40.000 12.10 6.47 37.82 3.86
3423 3916 5.580297 GTGCTAGAAATCAAGAGTTCAGGAG 59.420 44.000 12.10 7.47 37.82 3.69
3431 3959 1.398692 AGAGTTCAGGAGAGGATCGC 58.601 55.000 0.00 0.00 42.67 4.58
3436 3964 1.681538 TCAGGAGAGGATCGCTACAC 58.318 55.000 0.00 0.00 42.67 2.90
3445 3973 1.202313 GGATCGCTACACTGACAGACC 60.202 57.143 10.08 0.00 0.00 3.85
3453 3981 1.068127 ACACTGACAGACCGGTTGTAC 59.932 52.381 9.42 9.74 0.00 2.90
3469 3997 6.532657 CCGGTTGTACATTAGTTTGGTACTAG 59.467 42.308 0.00 0.00 40.35 2.57
3497 4025 6.458210 TGCACATGTATGATGTAGGATGTAG 58.542 40.000 0.00 0.00 0.00 2.74
3502 4030 7.290014 ACATGTATGATGTAGGATGTAGGTGAA 59.710 37.037 0.00 0.00 0.00 3.18
3506 4034 6.620877 TGATGTAGGATGTAGGTGAAAAGT 57.379 37.500 0.00 0.00 0.00 2.66
3507 4035 7.016153 TGATGTAGGATGTAGGTGAAAAGTT 57.984 36.000 0.00 0.00 0.00 2.66
3525 4054 7.913297 TGAAAAGTTAAAGTCCATTTTCTGTCG 59.087 33.333 9.35 0.00 39.46 4.35
3537 4066 3.496898 TCTGTCGTGTGACTGATGC 57.503 52.632 1.51 0.00 44.91 3.91
3574 4103 8.044908 ACTTTTATGAAGGAAATTACTAGCGGA 58.955 33.333 0.00 0.00 0.00 5.54
3596 4125 8.983724 GCGGAGATCCTATTATTTATAATCTGC 58.016 37.037 0.00 0.00 34.91 4.26
3608 4137 9.970395 TTATTTATAATCTGCTGAAAAGCATGG 57.030 29.630 0.11 0.00 44.47 3.66
3609 4138 2.667473 AATCTGCTGAAAAGCATGGC 57.333 45.000 0.11 0.00 44.47 4.40
3610 4139 1.552578 ATCTGCTGAAAAGCATGGCA 58.447 45.000 0.11 0.00 44.47 4.92
3611 4140 1.552578 TCTGCTGAAAAGCATGGCAT 58.447 45.000 0.11 0.00 44.47 4.40
3612 4141 1.203758 TCTGCTGAAAAGCATGGCATG 59.796 47.619 22.99 22.99 44.47 4.06
3613 4142 0.970640 TGCTGAAAAGCATGGCATGT 59.029 45.000 26.94 12.32 40.23 3.21
3614 4143 1.337354 TGCTGAAAAGCATGGCATGTG 60.337 47.619 26.94 6.53 40.23 3.21
3615 4144 1.355971 CTGAAAAGCATGGCATGTGC 58.644 50.000 26.94 16.68 42.81 4.57
3616 4145 0.388778 TGAAAAGCATGGCATGTGCG 60.389 50.000 26.94 3.70 46.86 5.34
3617 4146 0.109179 GAAAAGCATGGCATGTGCGA 60.109 50.000 26.94 0.00 46.86 5.10
3618 4147 0.388907 AAAAGCATGGCATGTGCGAC 60.389 50.000 26.94 11.21 46.86 5.19
3619 4148 1.525718 AAAGCATGGCATGTGCGACA 61.526 50.000 26.94 0.00 46.86 4.35
3620 4149 1.525718 AAGCATGGCATGTGCGACAA 61.526 50.000 26.94 0.00 46.86 3.18
3621 4150 1.802715 GCATGGCATGTGCGACAAC 60.803 57.895 26.94 5.59 43.26 3.32
3622 4151 1.580437 CATGGCATGTGCGACAACA 59.420 52.632 19.32 0.00 43.26 3.33
3623 4152 0.455464 CATGGCATGTGCGACAACAG 60.455 55.000 19.32 0.00 43.26 3.16
3624 4153 0.606130 ATGGCATGTGCGACAACAGA 60.606 50.000 0.00 0.00 43.26 3.41
3625 4154 1.207593 GGCATGTGCGACAACAGAC 59.792 57.895 0.00 0.00 43.26 3.51
3626 4155 1.207593 GCATGTGCGACAACAGACC 59.792 57.895 0.00 0.00 32.52 3.85
3627 4156 1.492873 CATGTGCGACAACAGACCG 59.507 57.895 0.00 0.00 32.52 4.79
3628 4157 1.667830 ATGTGCGACAACAGACCGG 60.668 57.895 0.00 0.00 32.52 5.28
3629 4158 2.279918 GTGCGACAACAGACCGGT 60.280 61.111 6.92 6.92 0.00 5.28
3630 4159 2.028484 TGCGACAACAGACCGGTC 59.972 61.111 27.67 27.67 0.00 4.79
3631 4160 2.737376 GCGACAACAGACCGGTCC 60.737 66.667 30.82 13.36 0.00 4.46
3632 4161 2.732016 CGACAACAGACCGGTCCA 59.268 61.111 30.82 0.00 0.00 4.02
3633 4162 1.372997 CGACAACAGACCGGTCCAG 60.373 63.158 30.82 24.75 0.00 3.86
3634 4163 1.746517 GACAACAGACCGGTCCAGT 59.253 57.895 30.82 25.42 0.00 4.00
3635 4164 0.963962 GACAACAGACCGGTCCAGTA 59.036 55.000 30.82 0.00 0.00 2.74
3636 4165 1.342174 GACAACAGACCGGTCCAGTAA 59.658 52.381 30.82 0.00 0.00 2.24
3637 4166 1.764134 ACAACAGACCGGTCCAGTAAA 59.236 47.619 30.82 0.00 0.00 2.01
3638 4167 2.140717 CAACAGACCGGTCCAGTAAAC 58.859 52.381 30.82 4.01 0.00 2.01
3639 4168 1.416243 ACAGACCGGTCCAGTAAACA 58.584 50.000 30.82 0.00 0.00 2.83
3640 4169 1.764134 ACAGACCGGTCCAGTAAACAA 59.236 47.619 30.82 0.00 0.00 2.83
3641 4170 2.171027 ACAGACCGGTCCAGTAAACAAA 59.829 45.455 30.82 0.00 0.00 2.83
3642 4171 3.207778 CAGACCGGTCCAGTAAACAAAA 58.792 45.455 30.82 0.00 0.00 2.44
3643 4172 3.250040 CAGACCGGTCCAGTAAACAAAAG 59.750 47.826 30.82 1.66 0.00 2.27
3644 4173 1.951602 ACCGGTCCAGTAAACAAAAGC 59.048 47.619 0.00 0.00 0.00 3.51
3645 4174 1.950909 CCGGTCCAGTAAACAAAAGCA 59.049 47.619 0.00 0.00 0.00 3.91
3646 4175 2.359531 CCGGTCCAGTAAACAAAAGCAA 59.640 45.455 0.00 0.00 0.00 3.91
3647 4176 3.005367 CCGGTCCAGTAAACAAAAGCAAT 59.995 43.478 0.00 0.00 0.00 3.56
3648 4177 4.500716 CCGGTCCAGTAAACAAAAGCAATT 60.501 41.667 0.00 0.00 0.00 2.32
3649 4178 5.047188 CGGTCCAGTAAACAAAAGCAATTT 58.953 37.500 0.00 0.00 0.00 1.82
3650 4179 5.174943 CGGTCCAGTAAACAAAAGCAATTTC 59.825 40.000 0.00 0.00 0.00 2.17
3651 4180 6.045955 GGTCCAGTAAACAAAAGCAATTTCA 58.954 36.000 0.00 0.00 0.00 2.69
3652 4181 6.705825 GGTCCAGTAAACAAAAGCAATTTCAT 59.294 34.615 0.00 0.00 0.00 2.57
3653 4182 7.095649 GGTCCAGTAAACAAAAGCAATTTCATC 60.096 37.037 0.00 0.00 0.00 2.92
3654 4183 6.928492 TCCAGTAAACAAAAGCAATTTCATCC 59.072 34.615 0.00 0.00 0.00 3.51
3655 4184 6.930722 CCAGTAAACAAAAGCAATTTCATCCT 59.069 34.615 0.00 0.00 0.00 3.24
3656 4185 7.095523 CCAGTAAACAAAAGCAATTTCATCCTG 60.096 37.037 0.00 0.00 0.00 3.86
3657 4186 7.652909 CAGTAAACAAAAGCAATTTCATCCTGA 59.347 33.333 0.00 0.00 0.00 3.86
3658 4187 8.370182 AGTAAACAAAAGCAATTTCATCCTGAT 58.630 29.630 0.00 0.00 0.00 2.90
3659 4188 7.429636 AAACAAAAGCAATTTCATCCTGATG 57.570 32.000 0.55 0.55 40.09 3.07
3660 4189 6.349243 ACAAAAGCAATTTCATCCTGATGA 57.651 33.333 5.74 5.74 45.30 2.92
3661 4190 6.942976 ACAAAAGCAATTTCATCCTGATGAT 58.057 32.000 10.44 0.00 46.12 2.45
3662 4191 8.070034 ACAAAAGCAATTTCATCCTGATGATA 57.930 30.769 10.44 6.69 46.12 2.15
3663 4192 8.701895 ACAAAAGCAATTTCATCCTGATGATAT 58.298 29.630 10.44 8.61 46.12 1.63
3664 4193 8.978539 CAAAAGCAATTTCATCCTGATGATATG 58.021 33.333 10.44 10.49 46.12 1.78
3665 4194 6.268825 AGCAATTTCATCCTGATGATATGC 57.731 37.500 21.94 21.94 46.12 3.14
3666 4195 5.773176 AGCAATTTCATCCTGATGATATGCA 59.227 36.000 26.44 8.74 46.12 3.96
3667 4196 6.071896 AGCAATTTCATCCTGATGATATGCAG 60.072 38.462 26.44 16.27 46.12 4.41
3668 4197 6.072119 GCAATTTCATCCTGATGATATGCAGA 60.072 38.462 23.22 0.00 46.12 4.26
3669 4198 7.523216 GCAATTTCATCCTGATGATATGCAGAA 60.523 37.037 23.22 11.39 46.12 3.02
3670 4199 8.357402 CAATTTCATCCTGATGATATGCAGAAA 58.643 33.333 10.44 0.79 46.12 2.52
3671 4200 6.872628 TTCATCCTGATGATATGCAGAAAC 57.127 37.500 10.44 0.00 46.12 2.78
3672 4201 5.932455 TCATCCTGATGATATGCAGAAACA 58.068 37.500 5.74 0.00 42.42 2.83
3673 4202 6.540083 TCATCCTGATGATATGCAGAAACAT 58.460 36.000 5.74 4.49 42.42 2.71
3674 4203 6.653740 TCATCCTGATGATATGCAGAAACATC 59.346 38.462 18.46 18.46 42.42 3.06
3675 4204 5.932455 TCCTGATGATATGCAGAAACATCA 58.068 37.500 23.16 23.16 42.85 3.07
3676 4205 6.358991 TCCTGATGATATGCAGAAACATCAA 58.641 36.000 24.04 14.35 43.85 2.57
3677 4206 6.829811 TCCTGATGATATGCAGAAACATCAAA 59.170 34.615 24.04 16.85 43.85 2.69
3678 4207 6.916387 CCTGATGATATGCAGAAACATCAAAC 59.084 38.462 24.04 12.78 43.85 2.93
3679 4208 7.201794 CCTGATGATATGCAGAAACATCAAACT 60.202 37.037 24.04 3.92 43.85 2.66
3680 4209 7.477494 TGATGATATGCAGAAACATCAAACTG 58.523 34.615 22.77 0.00 42.38 3.16
3681 4210 7.337436 TGATGATATGCAGAAACATCAAACTGA 59.663 33.333 22.77 7.32 42.38 3.41
3682 4211 6.845302 TGATATGCAGAAACATCAAACTGAC 58.155 36.000 0.00 0.00 32.90 3.51
3683 4212 6.430616 TGATATGCAGAAACATCAAACTGACA 59.569 34.615 0.00 0.00 32.90 3.58
3684 4213 4.979943 TGCAGAAACATCAAACTGACAA 57.020 36.364 0.00 0.00 32.90 3.18
3685 4214 4.671377 TGCAGAAACATCAAACTGACAAC 58.329 39.130 0.00 0.00 32.90 3.32
3686 4215 4.157472 TGCAGAAACATCAAACTGACAACA 59.843 37.500 0.00 0.00 32.90 3.33
3687 4216 5.101628 GCAGAAACATCAAACTGACAACAA 58.898 37.500 0.00 0.00 32.90 2.83
3688 4217 5.576384 GCAGAAACATCAAACTGACAACAAA 59.424 36.000 0.00 0.00 32.90 2.83
3689 4218 6.237648 GCAGAAACATCAAACTGACAACAAAG 60.238 38.462 0.00 0.00 32.90 2.77
3690 4219 7.028962 CAGAAACATCAAACTGACAACAAAGA 58.971 34.615 0.00 0.00 32.90 2.52
3691 4220 7.541783 CAGAAACATCAAACTGACAACAAAGAA 59.458 33.333 0.00 0.00 32.90 2.52
3692 4221 8.253113 AGAAACATCAAACTGACAACAAAGAAT 58.747 29.630 0.00 0.00 0.00 2.40
3693 4222 9.515020 GAAACATCAAACTGACAACAAAGAATA 57.485 29.630 0.00 0.00 0.00 1.75
3694 4223 9.520204 AAACATCAAACTGACAACAAAGAATAG 57.480 29.630 0.00 0.00 0.00 1.73
3695 4224 8.450578 ACATCAAACTGACAACAAAGAATAGA 57.549 30.769 0.00 0.00 0.00 1.98
3696 4225 8.902806 ACATCAAACTGACAACAAAGAATAGAA 58.097 29.630 0.00 0.00 0.00 2.10
3697 4226 9.734620 CATCAAACTGACAACAAAGAATAGAAA 57.265 29.630 0.00 0.00 0.00 2.52
3698 4227 9.736023 ATCAAACTGACAACAAAGAATAGAAAC 57.264 29.630 0.00 0.00 0.00 2.78
3699 4228 8.735315 TCAAACTGACAACAAAGAATAGAAACA 58.265 29.630 0.00 0.00 0.00 2.83
3700 4229 9.352784 CAAACTGACAACAAAGAATAGAAACAA 57.647 29.630 0.00 0.00 0.00 2.83
3702 4231 9.520204 AACTGACAACAAAGAATAGAAACAATG 57.480 29.630 0.00 0.00 0.00 2.82
3703 4232 8.137437 ACTGACAACAAAGAATAGAAACAATGG 58.863 33.333 0.00 0.00 0.00 3.16
3704 4233 6.922957 TGACAACAAAGAATAGAAACAATGGC 59.077 34.615 0.00 0.00 0.00 4.40
3705 4234 6.815089 ACAACAAAGAATAGAAACAATGGCA 58.185 32.000 0.00 0.00 0.00 4.92
3706 4235 7.271511 ACAACAAAGAATAGAAACAATGGCAA 58.728 30.769 0.00 0.00 0.00 4.52
3707 4236 7.439056 ACAACAAAGAATAGAAACAATGGCAAG 59.561 33.333 0.00 0.00 0.00 4.01
3708 4237 6.458210 ACAAAGAATAGAAACAATGGCAAGG 58.542 36.000 0.00 0.00 0.00 3.61
3709 4238 6.267471 ACAAAGAATAGAAACAATGGCAAGGA 59.733 34.615 0.00 0.00 0.00 3.36
3710 4239 6.916360 AAGAATAGAAACAATGGCAAGGAA 57.084 33.333 0.00 0.00 0.00 3.36
3711 4240 6.272822 AGAATAGAAACAATGGCAAGGAAC 57.727 37.500 0.00 0.00 0.00 3.62
3713 4242 5.904362 ATAGAAACAATGGCAAGGAACTC 57.096 39.130 0.00 0.00 38.49 3.01
3714 4243 2.554032 AGAAACAATGGCAAGGAACTCG 59.446 45.455 0.00 0.00 38.49 4.18
3715 4244 2.270352 AACAATGGCAAGGAACTCGA 57.730 45.000 0.00 0.00 38.49 4.04
3716 4245 1.813513 ACAATGGCAAGGAACTCGAG 58.186 50.000 11.84 11.84 38.49 4.04
3717 4246 1.072331 ACAATGGCAAGGAACTCGAGT 59.928 47.619 13.58 13.58 38.49 4.18
3718 4247 1.734465 CAATGGCAAGGAACTCGAGTC 59.266 52.381 20.33 12.14 38.49 3.36
3719 4248 0.976641 ATGGCAAGGAACTCGAGTCA 59.023 50.000 20.33 10.95 38.49 3.41
3720 4249 0.976641 TGGCAAGGAACTCGAGTCAT 59.023 50.000 20.33 3.47 38.49 3.06
3721 4250 1.066858 TGGCAAGGAACTCGAGTCATC 60.067 52.381 20.33 13.65 38.49 2.92
3722 4251 1.646189 GCAAGGAACTCGAGTCATCC 58.354 55.000 23.35 23.35 38.49 3.51
3723 4252 1.205893 GCAAGGAACTCGAGTCATCCT 59.794 52.381 26.45 26.45 44.08 3.24
3735 4264 0.753479 GTCATCCTCTCTCGGAGCCA 60.753 60.000 0.00 0.00 40.57 4.75
3929 4458 1.959899 CTCACTCATGAACGCGCCAC 61.960 60.000 5.73 0.00 33.30 5.01
4032 4561 1.278127 GGGAAGTTCTCGGTCCAATCA 59.722 52.381 2.25 0.00 32.70 2.57
4119 4648 7.618137 CCATCCCTCTGAAGATCAAAATTTTT 58.382 34.615 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.190744 GGACGTTGAAAAAGAGGGGATTC 59.809 47.826 0.00 0.00 0.00 2.52
12 13 2.271944 AGGACGTTGAAAAAGAGGGG 57.728 50.000 0.00 0.00 0.00 4.79
24 25 1.371558 GGTGAGGCTCAAGGACGTT 59.628 57.895 20.62 0.00 0.00 3.99
26 27 2.125912 CGGTGAGGCTCAAGGACG 60.126 66.667 20.62 16.89 0.00 4.79
28 29 2.922503 TGCGGTGAGGCTCAAGGA 60.923 61.111 20.62 14.74 0.00 3.36
41 42 0.171679 TACATGAGGTACGTGTGCGG 59.828 55.000 0.00 0.00 46.58 5.69
48 49 7.117812 ACAATGAAGAAACTTACATGAGGTACG 59.882 37.037 0.00 0.00 0.00 3.67
56 57 7.227156 ACAGGAGACAATGAAGAAACTTACAT 58.773 34.615 0.00 0.00 0.00 2.29
70 71 0.687354 AGGCGTCAACAGGAGACAAT 59.313 50.000 0.00 0.00 35.77 2.71
95 96 1.876156 GAAGTCAATGATGATCCCGCC 59.124 52.381 0.00 0.00 38.01 6.13
104 105 1.471676 GCCCTCGTCGAAGTCAATGAT 60.472 52.381 0.00 0.00 0.00 2.45
105 106 0.108804 GCCCTCGTCGAAGTCAATGA 60.109 55.000 0.00 0.00 0.00 2.57
107 108 0.173708 GAGCCCTCGTCGAAGTCAAT 59.826 55.000 0.00 0.00 0.00 2.57
111 112 1.668101 GGATGAGCCCTCGTCGAAGT 61.668 60.000 10.47 0.00 44.44 3.01
172 173 1.062587 CTAAGATTGAGCCGGCAAACG 59.937 52.381 31.54 2.51 43.80 3.60
178 179 0.460284 ACGCACTAAGATTGAGCCGG 60.460 55.000 0.00 0.00 0.00 6.13
180 181 2.010145 TGACGCACTAAGATTGAGCC 57.990 50.000 0.00 0.00 0.00 4.70
191 192 0.108898 GAGACTGAGCATGACGCACT 60.109 55.000 0.00 0.00 46.13 4.40
195 196 0.799917 CGTGGAGACTGAGCATGACG 60.800 60.000 0.00 0.00 0.00 4.35
206 207 0.389948 AATGAAGGCGACGTGGAGAC 60.390 55.000 0.11 0.00 0.00 3.36
214 215 0.165944 CCGACAACAATGAAGGCGAC 59.834 55.000 6.52 0.00 0.00 5.19
223 224 3.799366 TGTCTACAACACCGACAACAAT 58.201 40.909 0.00 0.00 34.99 2.71
225 226 2.963548 TGTCTACAACACCGACAACA 57.036 45.000 0.00 0.00 34.99 3.33
226 227 3.183775 GTCATGTCTACAACACCGACAAC 59.816 47.826 0.00 0.00 41.75 3.32
232 233 2.851263 TGGGTCATGTCTACAACACC 57.149 50.000 0.00 5.61 41.75 4.16
245 246 2.917897 GCCAAGGGGACATGGGTCA 61.918 63.158 0.00 0.00 46.17 4.02
260 261 1.682451 AACTCTATTAGCCGCGGCCA 61.682 55.000 44.47 32.33 43.17 5.36
261 262 0.944788 GAACTCTATTAGCCGCGGCC 60.945 60.000 44.47 27.39 43.17 6.13
280 281 8.041323 ACCTGCCTTATACCAAATATTCGATAG 58.959 37.037 0.00 0.00 0.00 2.08
283 284 6.182507 ACCTGCCTTATACCAAATATTCGA 57.817 37.500 0.00 0.00 0.00 3.71
284 285 6.877611 AACCTGCCTTATACCAAATATTCG 57.122 37.500 0.00 0.00 0.00 3.34
297 298 5.338871 CCAAGTCCAACTATAACCTGCCTTA 60.339 44.000 0.00 0.00 0.00 2.69
302 303 6.414732 TGAATCCAAGTCCAACTATAACCTG 58.585 40.000 0.00 0.00 0.00 4.00
311 567 5.463061 CACACAATTTGAATCCAAGTCCAAC 59.537 40.000 2.79 0.00 33.23 3.77
365 621 4.285260 ACGAGGGTTAGGATACAAGTGTTT 59.715 41.667 0.00 0.00 41.41 2.83
387 644 5.648572 GTGGGTCTACCTTCGCATATATAC 58.351 45.833 0.00 0.00 41.11 1.47
487 745 1.152819 TACTATGGGCGCTCCGACT 60.153 57.895 3.94 0.00 38.76 4.18
490 748 0.874607 GTTGTACTATGGGCGCTCCG 60.875 60.000 3.94 0.00 38.76 4.63
497 755 0.691748 TCCCGGGGTTGTACTATGGG 60.692 60.000 23.50 0.00 36.48 4.00
505 763 2.676265 GGCTACATCCCGGGGTTGT 61.676 63.158 27.95 27.95 38.85 3.32
506 764 2.192175 GGCTACATCCCGGGGTTG 59.808 66.667 23.50 20.95 0.00 3.77
534 792 3.376234 CACCGAGATCTGTTAACGAGGTA 59.624 47.826 0.00 0.00 0.00 3.08
578 844 1.739338 GCCGTCCATCTGTCGAGGAT 61.739 60.000 0.00 0.00 33.33 3.24
586 852 1.448540 GAGGTGTGCCGTCCATCTG 60.449 63.158 0.00 0.00 40.50 2.90
592 859 0.108520 TTAATCCGAGGTGTGCCGTC 60.109 55.000 0.00 0.00 40.50 4.79
595 862 2.614057 CAGAATTAATCCGAGGTGTGCC 59.386 50.000 0.00 0.00 0.00 5.01
598 865 4.819105 TGTCAGAATTAATCCGAGGTGT 57.181 40.909 0.00 0.00 0.00 4.16
599 866 6.683974 AAATGTCAGAATTAATCCGAGGTG 57.316 37.500 0.00 0.00 0.00 4.00
616 885 5.634020 AGTGTCGAAAGTGCTACTAAATGTC 59.366 40.000 0.00 0.00 0.00 3.06
620 889 7.117236 CCAAATAGTGTCGAAAGTGCTACTAAA 59.883 37.037 0.00 0.00 0.00 1.85
761 1074 8.743099 GGTAAGAAAACAAAATCTCGTGAAAAG 58.257 33.333 0.00 0.00 0.00 2.27
767 1080 8.989653 TTTTTGGTAAGAAAACAAAATCTCGT 57.010 26.923 2.11 0.00 41.84 4.18
794 1107 5.163550 CGGGGATTCTGGTTTTAAGGAAATC 60.164 44.000 0.00 0.00 0.00 2.17
797 1110 3.331294 TCGGGGATTCTGGTTTTAAGGAA 59.669 43.478 0.00 0.00 0.00 3.36
798 1111 2.914278 TCGGGGATTCTGGTTTTAAGGA 59.086 45.455 0.00 0.00 0.00 3.36
853 1166 2.874780 GCCGGTATATCGCGCGAG 60.875 66.667 36.99 22.37 0.00 5.03
922 1243 2.213499 CGGTGGGAAGATGAATACTGC 58.787 52.381 0.00 0.00 0.00 4.40
923 1244 2.213499 GCGGTGGGAAGATGAATACTG 58.787 52.381 0.00 0.00 0.00 2.74
924 1245 1.202533 CGCGGTGGGAAGATGAATACT 60.203 52.381 0.00 0.00 0.00 2.12
925 1246 1.217882 CGCGGTGGGAAGATGAATAC 58.782 55.000 0.00 0.00 0.00 1.89
926 1247 0.828022 ACGCGGTGGGAAGATGAATA 59.172 50.000 12.47 0.00 0.00 1.75
987 1311 0.179148 TGTCCATGATCGTTCGTCCG 60.179 55.000 0.00 0.00 0.00 4.79
994 1322 1.300156 CCGCGATGTCCATGATCGT 60.300 57.895 8.23 0.36 43.74 3.73
995 1323 1.005804 CTCCGCGATGTCCATGATCG 61.006 60.000 8.23 10.13 44.49 3.69
996 1324 0.032678 ACTCCGCGATGTCCATGATC 59.967 55.000 8.23 0.00 0.00 2.92
997 1325 1.000163 GTACTCCGCGATGTCCATGAT 60.000 52.381 8.23 0.00 0.00 2.45
998 1326 0.384309 GTACTCCGCGATGTCCATGA 59.616 55.000 8.23 0.00 0.00 3.07
1261 1589 2.024871 CGCGCTCCTCTTCCTACG 59.975 66.667 5.56 0.00 0.00 3.51
1262 1590 1.064458 GACGCGCTCCTCTTCCTAC 59.936 63.158 5.73 0.00 0.00 3.18
1263 1591 2.470362 CGACGCGCTCCTCTTCCTA 61.470 63.158 5.73 0.00 0.00 2.94
1279 1607 4.668118 GGACGAACAACCCGGCGA 62.668 66.667 9.30 0.00 35.53 5.54
1286 1614 1.670083 CCCTTCCCGGACGAACAAC 60.670 63.158 0.73 0.00 33.16 3.32
1360 1688 1.128809 TCGCCAAACCCCCTCTTACA 61.129 55.000 0.00 0.00 0.00 2.41
1447 1775 0.041982 GAGACCCTCCTCACCTTCCT 59.958 60.000 0.00 0.00 33.50 3.36
1492 1820 0.669318 TTCTTGGCGGCGTACTTCTG 60.669 55.000 9.37 0.00 0.00 3.02
1544 1875 4.394712 AGCTTTGGGGAGACGCCG 62.395 66.667 0.00 0.00 43.93 6.46
1545 1876 2.436824 GAGCTTTGGGGAGACGCC 60.437 66.667 0.00 0.00 43.93 5.68
1546 1877 1.743252 CAGAGCTTTGGGGAGACGC 60.743 63.158 0.00 0.00 44.99 5.19
1547 1878 1.743252 GCAGAGCTTTGGGGAGACG 60.743 63.158 6.36 0.00 0.00 4.18
1548 1879 1.743252 CGCAGAGCTTTGGGGAGAC 60.743 63.158 12.96 0.00 0.00 3.36
1549 1880 2.172483 GACGCAGAGCTTTGGGGAGA 62.172 60.000 22.76 0.00 35.52 3.71
1550 1881 1.743252 GACGCAGAGCTTTGGGGAG 60.743 63.158 22.76 0.57 35.52 4.30
1638 1969 2.175184 CTGCCTTGTCGCCGTCTTTG 62.175 60.000 0.00 0.00 0.00 2.77
1704 2041 3.760684 AGATTTTCTTGTCCATGAGCACC 59.239 43.478 0.00 0.00 0.00 5.01
1744 2081 1.414181 CCTGGATCGCTTGTAGGACAT 59.586 52.381 0.00 0.00 0.00 3.06
1779 2116 3.050275 GTGACCGTGCCCTGCTTC 61.050 66.667 0.00 0.00 0.00 3.86
2085 2422 0.533951 AGTCGCAGATCAGCATGTCA 59.466 50.000 10.95 0.00 40.67 3.58
2095 2432 4.827087 CGGGCAGCAGTCGCAGAT 62.827 66.667 0.00 0.00 40.67 2.90
2112 2449 2.732094 CCGTGGTGGAACGTCGAC 60.732 66.667 5.18 5.18 42.01 4.20
2157 2494 4.410400 GGGCAGAACCACTCCCCG 62.410 72.222 0.00 0.00 42.05 5.73
2227 2564 2.517598 CCGTCTTGTCGGTGAACTG 58.482 57.895 0.00 0.00 44.77 3.16
2268 2605 4.921515 TGTTGAATGTACTTACACTCTCGC 59.078 41.667 0.00 0.00 39.30 5.03
2290 2629 4.137116 TCTCGGAGTAATTTGGGATGTG 57.863 45.455 4.69 0.00 0.00 3.21
2436 2775 3.200593 GAGCAGTCATGGCCGCAG 61.201 66.667 8.47 0.00 0.00 5.18
2440 2779 0.745845 ATGTTCGAGCAGTCATGGCC 60.746 55.000 8.26 0.00 0.00 5.36
2487 2826 2.479275 CGCTGATGTAGGCATTGATCTG 59.521 50.000 0.00 0.00 35.07 2.90
2517 2856 2.288825 TGATCTCAACACGGTGAAGGTC 60.289 50.000 16.29 14.07 0.00 3.85
2616 2955 1.764723 TCGATGAGGGTGATGAAGCAT 59.235 47.619 0.00 0.00 0.00 3.79
2707 3046 7.287512 TCCACAAATGAAATGAGATGTTGAA 57.712 32.000 0.00 0.00 0.00 2.69
2749 3088 4.167554 ACTCTCTGTTGAAGACGATGTC 57.832 45.455 0.00 0.00 0.00 3.06
2750 3089 5.241949 ACTTACTCTCTGTTGAAGACGATGT 59.758 40.000 0.00 0.00 0.00 3.06
2829 3169 0.549469 ATCCCCGGAAATTTAGCCGT 59.451 50.000 14.98 0.00 45.85 5.68
2835 3175 3.275999 CACGTAGAATCCCCGGAAATTT 58.724 45.455 0.73 0.00 0.00 1.82
2859 3199 2.202623 CCGCCTTTCTCGAGACCG 60.203 66.667 16.36 14.70 37.07 4.79
2911 3255 7.930865 ACATAAGAAGAAGATGATCAAGTAGCC 59.069 37.037 0.00 0.00 0.00 3.93
2912 3256 8.885494 ACATAAGAAGAAGATGATCAAGTAGC 57.115 34.615 0.00 0.00 0.00 3.58
2939 3283 9.289303 CAAGGCAAAATGTATTTCATGTAGTAC 57.711 33.333 0.00 0.00 36.81 2.73
2941 3285 6.813152 GCAAGGCAAAATGTATTTCATGTAGT 59.187 34.615 0.00 0.00 36.81 2.73
2944 3288 5.549347 TGCAAGGCAAAATGTATTTCATGT 58.451 33.333 0.00 0.00 34.76 3.21
2980 3336 2.028130 TGCACCAACAAAGGACGATTT 58.972 42.857 0.00 0.00 0.00 2.17
2985 3341 0.755327 ACCCTGCACCAACAAAGGAC 60.755 55.000 0.00 0.00 30.92 3.85
2989 3345 1.394618 GTACACCCTGCACCAACAAA 58.605 50.000 0.00 0.00 0.00 2.83
3098 3454 4.323868 CGATCAAACTTCAGACGTACCTTC 59.676 45.833 0.00 0.00 0.00 3.46
3110 3466 6.002062 ACAATTCTTGGACGATCAAACTTC 57.998 37.500 0.00 0.00 34.12 3.01
3135 3508 2.296752 AGCTCTGACGATGATCATGGAG 59.703 50.000 22.78 16.05 0.00 3.86
3143 3516 5.478407 TGAAATGTTTAGCTCTGACGATGA 58.522 37.500 0.00 0.00 0.00 2.92
3144 3517 5.784750 TGAAATGTTTAGCTCTGACGATG 57.215 39.130 0.00 0.00 0.00 3.84
3145 3518 6.355397 CATGAAATGTTTAGCTCTGACGAT 57.645 37.500 0.00 0.00 40.20 3.73
3199 3572 3.999285 ACGAGCCTCTCCACCCCT 61.999 66.667 0.00 0.00 0.00 4.79
3291 3664 2.048690 GCTCCGCGATCTCCATCC 60.049 66.667 8.23 0.00 0.00 3.51
3304 3677 3.566261 CACATGACGGTGTGCTCC 58.434 61.111 0.00 0.00 42.51 4.70
3337 3710 2.226437 GACGATGAACTTGTGGCACATT 59.774 45.455 22.73 13.94 44.52 2.71
3346 3719 1.421485 GGCGCTGACGATGAACTTG 59.579 57.895 7.64 0.00 43.93 3.16
3364 3740 1.926561 TTCATCTTCATGGAGTCGCG 58.073 50.000 0.00 0.00 0.00 5.87
3401 3777 5.971763 TCTCCTGAACTCTTGATTTCTAGC 58.028 41.667 3.15 0.00 0.00 3.42
3402 3778 6.379703 TCCTCTCCTGAACTCTTGATTTCTAG 59.620 42.308 3.15 0.00 0.00 2.43
3421 3914 2.017782 TGTCAGTGTAGCGATCCTCTC 58.982 52.381 0.00 0.00 0.00 3.20
3422 3915 2.020720 CTGTCAGTGTAGCGATCCTCT 58.979 52.381 0.00 0.00 0.00 3.69
3423 3916 2.017782 TCTGTCAGTGTAGCGATCCTC 58.982 52.381 0.00 0.00 0.00 3.71
3431 3959 1.340248 ACAACCGGTCTGTCAGTGTAG 59.660 52.381 8.04 0.00 0.00 2.74
3436 3964 2.743636 ATGTACAACCGGTCTGTCAG 57.256 50.000 20.78 0.00 0.00 3.51
3445 3973 7.062605 CACTAGTACCAAACTAATGTACAACCG 59.937 40.741 0.00 0.00 40.21 4.44
3453 3981 4.935205 TGCAGCACTAGTACCAAACTAATG 59.065 41.667 0.00 0.00 40.20 1.90
3469 3997 3.249320 CCTACATCATACATGTGCAGCAC 59.751 47.826 19.37 19.37 33.76 4.40
3497 4025 7.979537 ACAGAAAATGGACTTTAACTTTTCACC 59.020 33.333 8.30 0.00 37.95 4.02
3502 4030 7.148137 ACACGACAGAAAATGGACTTTAACTTT 60.148 33.333 0.00 0.00 0.00 2.66
3506 4034 5.818336 TCACACGACAGAAAATGGACTTTAA 59.182 36.000 0.00 0.00 0.00 1.52
3507 4035 5.235616 GTCACACGACAGAAAATGGACTTTA 59.764 40.000 0.00 0.00 42.13 1.85
3525 4054 4.455533 TCCAAATTACTGCATCAGTCACAC 59.544 41.667 2.39 0.00 41.21 3.82
3534 4063 8.253113 CCTTCATAAAAGTCCAAATTACTGCAT 58.747 33.333 0.00 0.00 0.00 3.96
3595 4124 2.594403 GCACATGCCATGCTTTTCAGC 61.594 52.381 4.17 0.00 40.08 4.26
3596 4125 1.355971 GCACATGCCATGCTTTTCAG 58.644 50.000 4.17 0.00 40.08 3.02
3597 4126 0.388778 CGCACATGCCATGCTTTTCA 60.389 50.000 4.17 0.00 41.10 2.69
3598 4127 0.109179 TCGCACATGCCATGCTTTTC 60.109 50.000 4.17 0.00 41.10 2.29
3599 4128 0.388907 GTCGCACATGCCATGCTTTT 60.389 50.000 4.17 0.00 41.10 2.27
3600 4129 1.213537 GTCGCACATGCCATGCTTT 59.786 52.632 4.17 0.00 41.10 3.51
3601 4130 1.525718 TTGTCGCACATGCCATGCTT 61.526 50.000 4.17 0.00 41.10 3.91
3602 4131 1.972752 TTGTCGCACATGCCATGCT 60.973 52.632 4.17 0.00 41.10 3.79
3603 4132 1.802715 GTTGTCGCACATGCCATGC 60.803 57.895 4.17 0.00 39.81 4.06
3604 4133 0.455464 CTGTTGTCGCACATGCCATG 60.455 55.000 2.40 2.40 37.91 3.66
3605 4134 0.606130 TCTGTTGTCGCACATGCCAT 60.606 50.000 0.00 0.00 37.91 4.40
3606 4135 1.227793 TCTGTTGTCGCACATGCCA 60.228 52.632 0.00 0.00 37.91 4.92
3607 4136 1.207593 GTCTGTTGTCGCACATGCC 59.792 57.895 0.00 0.00 37.91 4.40
3608 4137 1.207593 GGTCTGTTGTCGCACATGC 59.792 57.895 0.00 0.00 37.78 4.06
3609 4138 1.492873 CGGTCTGTTGTCGCACATG 59.507 57.895 0.00 0.00 0.00 3.21
3610 4139 1.667830 CCGGTCTGTTGTCGCACAT 60.668 57.895 0.00 0.00 0.00 3.21
3611 4140 2.279851 CCGGTCTGTTGTCGCACA 60.280 61.111 0.00 0.00 0.00 4.57
3612 4141 2.279918 ACCGGTCTGTTGTCGCAC 60.280 61.111 0.00 0.00 0.00 5.34
3613 4142 2.028484 GACCGGTCTGTTGTCGCA 59.972 61.111 27.64 0.00 0.00 5.10
3614 4143 2.737376 GGACCGGTCTGTTGTCGC 60.737 66.667 32.52 10.90 0.00 5.19
3615 4144 1.372997 CTGGACCGGTCTGTTGTCG 60.373 63.158 32.52 10.50 0.00 4.35
3616 4145 0.963962 TACTGGACCGGTCTGTTGTC 59.036 55.000 32.52 16.20 0.00 3.18
3617 4146 1.416243 TTACTGGACCGGTCTGTTGT 58.584 50.000 32.52 24.80 0.00 3.32
3618 4147 2.140717 GTTTACTGGACCGGTCTGTTG 58.859 52.381 32.52 21.04 0.00 3.33
3619 4148 1.764134 TGTTTACTGGACCGGTCTGTT 59.236 47.619 32.52 18.94 0.00 3.16
3620 4149 1.416243 TGTTTACTGGACCGGTCTGT 58.584 50.000 32.52 29.41 0.00 3.41
3621 4150 2.536761 TTGTTTACTGGACCGGTCTG 57.463 50.000 32.52 25.90 0.00 3.51
3622 4151 3.473625 CTTTTGTTTACTGGACCGGTCT 58.526 45.455 32.52 16.90 0.00 3.85
3623 4152 2.031420 GCTTTTGTTTACTGGACCGGTC 60.031 50.000 27.04 27.04 0.00 4.79
3624 4153 1.951602 GCTTTTGTTTACTGGACCGGT 59.048 47.619 6.92 6.92 0.00 5.28
3625 4154 1.950909 TGCTTTTGTTTACTGGACCGG 59.049 47.619 0.00 0.00 0.00 5.28
3626 4155 3.701532 TTGCTTTTGTTTACTGGACCG 57.298 42.857 0.00 0.00 0.00 4.79
3627 4156 6.045955 TGAAATTGCTTTTGTTTACTGGACC 58.954 36.000 0.00 0.00 0.00 4.46
3628 4157 7.095649 GGATGAAATTGCTTTTGTTTACTGGAC 60.096 37.037 0.00 0.00 0.00 4.02
3629 4158 6.928492 GGATGAAATTGCTTTTGTTTACTGGA 59.072 34.615 0.00 0.00 0.00 3.86
3630 4159 6.930722 AGGATGAAATTGCTTTTGTTTACTGG 59.069 34.615 0.00 0.00 0.00 4.00
3631 4160 7.652909 TCAGGATGAAATTGCTTTTGTTTACTG 59.347 33.333 0.00 0.00 45.97 2.74
3632 4161 7.725251 TCAGGATGAAATTGCTTTTGTTTACT 58.275 30.769 0.00 0.00 45.97 2.24
3633 4162 7.945033 TCAGGATGAAATTGCTTTTGTTTAC 57.055 32.000 0.00 0.00 45.97 2.01
3650 4179 6.430000 TGATGTTTCTGCATATCATCAGGATG 59.570 38.462 15.11 2.84 39.53 3.51
3651 4180 6.540083 TGATGTTTCTGCATATCATCAGGAT 58.460 36.000 15.11 0.00 39.53 3.24
3652 4181 5.932455 TGATGTTTCTGCATATCATCAGGA 58.068 37.500 15.11 0.00 39.53 3.86
3653 4182 6.628919 TTGATGTTTCTGCATATCATCAGG 57.371 37.500 17.03 0.00 43.25 3.86
3654 4183 7.644157 CAGTTTGATGTTTCTGCATATCATCAG 59.356 37.037 17.03 8.04 43.25 2.90
3655 4184 7.337436 TCAGTTTGATGTTTCTGCATATCATCA 59.663 33.333 15.11 15.11 41.62 3.07
3656 4185 7.642978 GTCAGTTTGATGTTTCTGCATATCATC 59.357 37.037 11.64 11.64 36.46 2.92
3657 4186 7.121611 TGTCAGTTTGATGTTTCTGCATATCAT 59.878 33.333 0.00 0.00 30.45 2.45
3658 4187 6.430616 TGTCAGTTTGATGTTTCTGCATATCA 59.569 34.615 0.00 0.00 0.00 2.15
3659 4188 6.845302 TGTCAGTTTGATGTTTCTGCATATC 58.155 36.000 0.00 0.00 0.00 1.63
3660 4189 6.822667 TGTCAGTTTGATGTTTCTGCATAT 57.177 33.333 0.00 0.00 0.00 1.78
3661 4190 6.039159 TGTTGTCAGTTTGATGTTTCTGCATA 59.961 34.615 0.00 0.00 0.00 3.14
3662 4191 5.163530 TGTTGTCAGTTTGATGTTTCTGCAT 60.164 36.000 0.00 0.00 0.00 3.96
3663 4192 4.157472 TGTTGTCAGTTTGATGTTTCTGCA 59.843 37.500 0.00 0.00 0.00 4.41
3664 4193 4.671377 TGTTGTCAGTTTGATGTTTCTGC 58.329 39.130 0.00 0.00 0.00 4.26
3665 4194 7.028962 TCTTTGTTGTCAGTTTGATGTTTCTG 58.971 34.615 0.00 0.00 0.00 3.02
3666 4195 7.156876 TCTTTGTTGTCAGTTTGATGTTTCT 57.843 32.000 0.00 0.00 0.00 2.52
3667 4196 7.810766 TTCTTTGTTGTCAGTTTGATGTTTC 57.189 32.000 0.00 0.00 0.00 2.78
3668 4197 9.520204 CTATTCTTTGTTGTCAGTTTGATGTTT 57.480 29.630 0.00 0.00 0.00 2.83
3669 4198 8.902806 TCTATTCTTTGTTGTCAGTTTGATGTT 58.097 29.630 0.00 0.00 0.00 2.71
3670 4199 8.450578 TCTATTCTTTGTTGTCAGTTTGATGT 57.549 30.769 0.00 0.00 0.00 3.06
3671 4200 9.734620 TTTCTATTCTTTGTTGTCAGTTTGATG 57.265 29.630 0.00 0.00 0.00 3.07
3672 4201 9.736023 GTTTCTATTCTTTGTTGTCAGTTTGAT 57.264 29.630 0.00 0.00 0.00 2.57
3673 4202 8.735315 TGTTTCTATTCTTTGTTGTCAGTTTGA 58.265 29.630 0.00 0.00 0.00 2.69
3674 4203 8.909708 TGTTTCTATTCTTTGTTGTCAGTTTG 57.090 30.769 0.00 0.00 0.00 2.93
3676 4205 9.520204 CATTGTTTCTATTCTTTGTTGTCAGTT 57.480 29.630 0.00 0.00 0.00 3.16
3677 4206 8.137437 CCATTGTTTCTATTCTTTGTTGTCAGT 58.863 33.333 0.00 0.00 0.00 3.41
3678 4207 7.115378 GCCATTGTTTCTATTCTTTGTTGTCAG 59.885 37.037 0.00 0.00 0.00 3.51
3679 4208 6.922957 GCCATTGTTTCTATTCTTTGTTGTCA 59.077 34.615 0.00 0.00 0.00 3.58
3680 4209 6.922957 TGCCATTGTTTCTATTCTTTGTTGTC 59.077 34.615 0.00 0.00 0.00 3.18
3681 4210 6.815089 TGCCATTGTTTCTATTCTTTGTTGT 58.185 32.000 0.00 0.00 0.00 3.32
3682 4211 7.095523 CCTTGCCATTGTTTCTATTCTTTGTTG 60.096 37.037 0.00 0.00 0.00 3.33
3683 4212 6.930722 CCTTGCCATTGTTTCTATTCTTTGTT 59.069 34.615 0.00 0.00 0.00 2.83
3684 4213 6.267471 TCCTTGCCATTGTTTCTATTCTTTGT 59.733 34.615 0.00 0.00 0.00 2.83
3685 4214 6.690530 TCCTTGCCATTGTTTCTATTCTTTG 58.309 36.000 0.00 0.00 0.00 2.77
3686 4215 6.916360 TCCTTGCCATTGTTTCTATTCTTT 57.084 33.333 0.00 0.00 0.00 2.52
3687 4216 6.494835 AGTTCCTTGCCATTGTTTCTATTCTT 59.505 34.615 0.00 0.00 0.00 2.52
3688 4217 6.012745 AGTTCCTTGCCATTGTTTCTATTCT 58.987 36.000 0.00 0.00 0.00 2.40
3689 4218 6.272822 AGTTCCTTGCCATTGTTTCTATTC 57.727 37.500 0.00 0.00 0.00 1.75
3690 4219 5.106157 CGAGTTCCTTGCCATTGTTTCTATT 60.106 40.000 0.00 0.00 0.00 1.73
3691 4220 4.396166 CGAGTTCCTTGCCATTGTTTCTAT 59.604 41.667 0.00 0.00 0.00 1.98
3692 4221 3.751175 CGAGTTCCTTGCCATTGTTTCTA 59.249 43.478 0.00 0.00 0.00 2.10
3693 4222 2.554032 CGAGTTCCTTGCCATTGTTTCT 59.446 45.455 0.00 0.00 0.00 2.52
3694 4223 2.552315 TCGAGTTCCTTGCCATTGTTTC 59.448 45.455 0.00 0.00 0.00 2.78
3695 4224 2.554032 CTCGAGTTCCTTGCCATTGTTT 59.446 45.455 3.62 0.00 0.00 2.83
3696 4225 2.154462 CTCGAGTTCCTTGCCATTGTT 58.846 47.619 3.62 0.00 0.00 2.83
3697 4226 1.072331 ACTCGAGTTCCTTGCCATTGT 59.928 47.619 13.58 0.00 0.00 2.71
3698 4227 1.734465 GACTCGAGTTCCTTGCCATTG 59.266 52.381 21.08 0.00 0.00 2.82
3699 4228 1.347707 TGACTCGAGTTCCTTGCCATT 59.652 47.619 21.08 0.00 0.00 3.16
3700 4229 0.976641 TGACTCGAGTTCCTTGCCAT 59.023 50.000 21.08 0.00 0.00 4.40
3701 4230 0.976641 ATGACTCGAGTTCCTTGCCA 59.023 50.000 21.08 11.39 0.00 4.92
3702 4231 1.646189 GATGACTCGAGTTCCTTGCC 58.354 55.000 21.08 5.33 0.00 4.52
3703 4232 1.205893 AGGATGACTCGAGTTCCTTGC 59.794 52.381 26.45 15.41 32.81 4.01
3704 4233 3.157932 GAGGATGACTCGAGTTCCTTG 57.842 52.381 30.44 2.35 35.89 3.61
3714 4243 0.951558 GCTCCGAGAGAGGATGACTC 59.048 60.000 0.00 0.00 46.98 3.36
3715 4244 0.467290 GGCTCCGAGAGAGGATGACT 60.467 60.000 0.00 0.00 43.46 3.41
3716 4245 0.753479 TGGCTCCGAGAGAGGATGAC 60.753 60.000 0.00 0.00 43.46 3.06
3717 4246 0.033109 TTGGCTCCGAGAGAGGATGA 60.033 55.000 0.00 0.00 43.46 2.92
3718 4247 0.826715 TTTGGCTCCGAGAGAGGATG 59.173 55.000 0.00 0.00 43.46 3.51
3719 4248 1.118838 CTTTGGCTCCGAGAGAGGAT 58.881 55.000 0.00 0.00 43.46 3.24
3720 4249 0.251832 ACTTTGGCTCCGAGAGAGGA 60.252 55.000 0.00 0.00 43.46 3.71
3721 4250 0.610687 AACTTTGGCTCCGAGAGAGG 59.389 55.000 0.00 0.00 43.46 3.69
3722 4251 1.273606 TGAACTTTGGCTCCGAGAGAG 59.726 52.381 0.00 0.00 46.29 3.20
3723 4252 1.338107 TGAACTTTGGCTCCGAGAGA 58.662 50.000 0.00 0.00 0.00 3.10
3735 4264 7.494922 AGCCCCATTATTAACATTGAACTTT 57.505 32.000 0.00 0.00 0.00 2.66
4032 4561 4.322049 CCTTCGGTCATCTTGTTGTAGAGT 60.322 45.833 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.