Multiple sequence alignment - TraesCS2B01G099500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G099500 chr2B 100.000 4871 0 0 1 4871 58847788 58842918 0.000000e+00 8996.0
1 TraesCS2B01G099500 chr2B 80.000 740 92 20 1906 2633 773749804 773749109 3.390000e-136 496.0
2 TraesCS2B01G099500 chr2B 78.451 710 97 21 1933 2633 774612807 774613469 3.510000e-111 412.0
3 TraesCS2B01G099500 chr2B 83.434 332 39 3 2308 2633 774654317 774654638 1.330000e-75 294.0
4 TraesCS2B01G099500 chr2B 81.928 332 43 4 2308 2633 774637975 774638295 1.040000e-66 265.0
5 TraesCS2B01G099500 chr2B 96.522 115 3 1 968 1082 58867557 58867444 6.440000e-44 189.0
6 TraesCS2B01G099500 chr2B 94.792 96 5 0 853 948 58869392 58869297 3.040000e-32 150.0
7 TraesCS2B01G099500 chr2D 86.130 2747 201 74 1 2634 35687505 35684826 0.000000e+00 2796.0
8 TraesCS2B01G099500 chr2D 89.207 1501 131 13 3357 4837 35684299 35682810 0.000000e+00 1845.0
9 TraesCS2B01G099500 chr2D 83.527 431 40 16 2910 3332 35684765 35684358 1.660000e-99 374.0
10 TraesCS2B01G099500 chr2D 83.155 374 30 14 626 989 35711614 35711964 1.320000e-80 311.0
11 TraesCS2B01G099500 chr2D 76.604 265 43 7 634 894 35691760 35691511 1.420000e-25 128.0
12 TraesCS2B01G099500 chr2A 91.196 1840 85 35 865 2634 38915690 38913858 0.000000e+00 2429.0
13 TraesCS2B01G099500 chr2A 91.353 1515 89 18 3349 4843 38913224 38911732 0.000000e+00 2034.0
14 TraesCS2B01G099500 chr2A 90.506 474 32 6 2866 3332 38913745 38913278 8.960000e-172 614.0
15 TraesCS2B01G099500 chr2A 80.839 715 87 14 1933 2633 760433093 760433771 2.600000e-142 516.0
16 TraesCS2B01G099500 chr2A 82.137 571 66 15 1 538 38917307 38916740 1.600000e-124 457.0
17 TraesCS2B01G099500 chr2A 84.348 230 26 2 2395 2624 760493074 760493293 2.950000e-52 217.0
18 TraesCS2B01G099500 chr2A 76.901 342 55 10 440 776 38916115 38915793 6.480000e-39 172.0
19 TraesCS2B01G099500 chr2A 100.000 30 0 0 4842 4871 38911742 38911713 6.810000e-04 56.5
20 TraesCS2B01G099500 chr7D 85.083 543 44 21 1152 1684 495138647 495139162 2.010000e-143 520.0
21 TraesCS2B01G099500 chr7D 93.617 47 3 0 2624 2670 329500223 329500177 2.430000e-08 71.3
22 TraesCS2B01G099500 chr4A 89.256 242 26 0 1240 1481 132703144 132702903 2.200000e-78 303.0
23 TraesCS2B01G099500 chr4A 87.586 145 18 0 3448 3592 132701343 132701199 8.380000e-38 169.0
24 TraesCS2B01G099500 chr4A 76.068 234 51 5 1258 1489 459627702 459627932 3.080000e-22 117.0
25 TraesCS2B01G099500 chr4A 90.361 83 7 1 1779 1861 132702621 132702540 1.850000e-19 108.0
26 TraesCS2B01G099500 chr4B 89.121 239 26 0 1240 1478 418752280 418752518 1.020000e-76 298.0
27 TraesCS2B01G099500 chr4B 86.207 145 20 0 3448 3592 418754080 418754224 1.810000e-34 158.0
28 TraesCS2B01G099500 chr4B 76.496 234 50 5 1258 1489 178853863 178853633 6.620000e-24 122.0
29 TraesCS2B01G099500 chr4B 92.000 75 6 0 1783 1857 418752808 418752882 6.670000e-19 106.0
30 TraesCS2B01G099500 chr5A 78.927 261 46 9 1230 1486 332215283 332215538 8.380000e-38 169.0
31 TraesCS2B01G099500 chr5A 95.604 91 2 2 2775 2864 285846636 285846725 1.410000e-30 145.0
32 TraesCS2B01G099500 chr5A 97.674 43 0 1 2632 2674 44801141 44801100 6.760000e-09 73.1
33 TraesCS2B01G099500 chr5D 78.516 256 48 7 1230 1482 249523606 249523857 1.400000e-35 161.0
34 TraesCS2B01G099500 chr5D 97.674 43 0 1 2632 2674 255371811 255371852 6.760000e-09 73.1
35 TraesCS2B01G099500 chr5B 78.516 256 48 7 1230 1482 282264877 282265128 1.400000e-35 161.0
36 TraesCS2B01G099500 chr5B 93.617 94 4 2 2770 2862 419403261 419403353 6.570000e-29 139.0
37 TraesCS2B01G099500 chr5B 92.857 98 3 4 2775 2871 705083934 705084028 6.570000e-29 139.0
38 TraesCS2B01G099500 chr4D 85.517 145 21 0 3448 3592 339228355 339228499 8.440000e-33 152.0
39 TraesCS2B01G099500 chr4D 76.496 234 50 5 1258 1489 116823006 116822776 6.620000e-24 122.0
40 TraesCS2B01G099500 chr4D 89.873 79 7 1 1779 1857 339227058 339227135 3.100000e-17 100.0
41 TraesCS2B01G099500 chr3A 94.624 93 3 2 2771 2862 697244145 697244236 5.080000e-30 143.0
42 TraesCS2B01G099500 chr1A 94.624 93 3 2 2771 2862 486046070 486046161 5.080000e-30 143.0
43 TraesCS2B01G099500 chr1B 95.506 89 2 2 2775 2862 35658039 35658126 1.830000e-29 141.0
44 TraesCS2B01G099500 chr1B 95.506 89 2 2 2775 2862 117282740 117282827 1.830000e-29 141.0
45 TraesCS2B01G099500 chr1B 97.674 43 0 1 2628 2670 2525826 2525785 6.760000e-09 73.1
46 TraesCS2B01G099500 chr6D 93.617 94 4 2 2770 2862 452939007 452939099 6.570000e-29 139.0
47 TraesCS2B01G099500 chr6D 95.556 45 1 1 2630 2674 26738823 26738780 2.430000e-08 71.3
48 TraesCS2B01G099500 chr6A 94.444 90 3 2 2776 2864 297654449 297654361 2.360000e-28 137.0
49 TraesCS2B01G099500 chr6A 97.674 43 0 1 2632 2674 4785905 4785864 6.760000e-09 73.1
50 TraesCS2B01G099500 chr1D 95.745 47 0 2 2628 2674 358222550 358222594 1.880000e-09 75.0
51 TraesCS2B01G099500 chr1D 97.674 43 0 1 2632 2674 339102036 339102077 6.760000e-09 73.1
52 TraesCS2B01G099500 chr3B 97.674 43 0 1 2632 2674 135685088 135685047 6.760000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G099500 chr2B 58842918 58847788 4870 True 8996.000000 8996 100.000000 1 4871 1 chr2B.!!$R1 4870
1 TraesCS2B01G099500 chr2B 773749109 773749804 695 True 496.000000 496 80.000000 1906 2633 1 chr2B.!!$R2 727
2 TraesCS2B01G099500 chr2B 774612807 774613469 662 False 412.000000 412 78.451000 1933 2633 1 chr2B.!!$F1 700
3 TraesCS2B01G099500 chr2D 35682810 35687505 4695 True 1671.666667 2796 86.288000 1 4837 3 chr2D.!!$R2 4836
4 TraesCS2B01G099500 chr2A 38911713 38917307 5594 True 960.416667 2429 88.682167 1 4871 6 chr2A.!!$R1 4870
5 TraesCS2B01G099500 chr2A 760433093 760433771 678 False 516.000000 516 80.839000 1933 2633 1 chr2A.!!$F1 700
6 TraesCS2B01G099500 chr7D 495138647 495139162 515 False 520.000000 520 85.083000 1152 1684 1 chr7D.!!$F1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 581 0.242825 TGGAACTGCTTACGTCGAGG 59.757 55.0 3.03 3.03 0.00 4.63 F
678 1451 0.317269 TTCGTCGACCTTCACGTGTC 60.317 55.0 16.51 4.54 37.30 3.67 F
1714 2606 0.535797 CCTTCTTACACCTCGACCCC 59.464 60.0 0.00 0.00 0.00 4.95 F
2784 3725 0.340208 AGCCCTGCTAACTACTCCCT 59.660 55.0 0.00 0.00 36.99 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2180 3100 0.321122 CTGGACTCCTTGACCACTGC 60.321 60.0 0.0 0.0 35.68 4.40 R
2615 3553 2.930682 GGAGTAACTCGCAATTCCAGAC 59.069 50.0 0.0 0.0 0.00 3.51 R
2843 3784 0.337082 TTACTCCCTCCGTCCCATGA 59.663 55.0 0.0 0.0 0.00 3.07 R
3908 4898 0.103208 GGCTACTCGGTCAGGTGATG 59.897 60.0 0.0 0.0 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.761449 TGTGTGAGCAACATTGGTGT 58.239 45.000 3.21 0.00 41.97 4.16
57 58 2.027460 GGTGGTTTGCCGCTGTTG 59.973 61.111 0.00 0.00 44.44 3.33
92 93 7.897864 AGAAAGAGAAAACGAGAGATTAGGAA 58.102 34.615 0.00 0.00 0.00 3.36
112 114 7.763564 AGGAAAGAGAAAGGGAGAGATAAAT 57.236 36.000 0.00 0.00 0.00 1.40
150 166 7.991460 GCAAAAGGACTATACTACCCTTATGTT 59.009 37.037 0.00 0.00 37.99 2.71
168 190 7.659799 CCTTATGTTGAACCGATATGGAATACA 59.340 37.037 0.00 0.00 42.00 2.29
174 196 8.885722 GTTGAACCGATATGGAATACACTAAAA 58.114 33.333 0.00 0.00 42.00 1.52
197 219 4.047135 ACTTTTAGTGGGGTAGGGGTAGTA 59.953 45.833 0.00 0.00 0.00 1.82
222 254 2.502538 CAAACCTACGGGACCCTTATGA 59.497 50.000 9.41 0.00 36.25 2.15
239 271 8.784043 ACCCTTATGAATTTCTTAATACATCGC 58.216 33.333 5.50 0.00 0.00 4.58
247 279 4.585955 TCTTAATACATCGCCAGGAGAC 57.414 45.455 0.00 0.00 0.00 3.36
251 283 1.557099 TACATCGCCAGGAGACACTT 58.443 50.000 0.00 0.00 0.00 3.16
256 288 1.376553 GCCAGGAGACACTTGAGGC 60.377 63.158 0.00 0.00 0.00 4.70
277 309 8.087750 TGAGGCAAAAGAACGAATTTCATAATT 58.912 29.630 0.00 0.00 36.57 1.40
280 312 8.162245 GGCAAAAGAACGAATTTCATAATTCAC 58.838 33.333 10.25 2.94 46.52 3.18
285 317 9.831737 AAGAACGAATTTCATAATTCACTCTTG 57.168 29.630 15.87 3.28 46.52 3.02
330 364 4.406648 TGTCAACTCTCAGCTTCTTTCA 57.593 40.909 0.00 0.00 0.00 2.69
335 369 4.414337 ACTCTCAGCTTCTTTCACAACT 57.586 40.909 0.00 0.00 0.00 3.16
345 379 7.754924 CAGCTTCTTTCACAACTGTTTCTTTAA 59.245 33.333 0.00 0.00 0.00 1.52
348 382 9.405587 CTTCTTTCACAACTGTTTCTTTAACAA 57.594 29.630 0.00 0.00 45.69 2.83
371 406 1.664629 CAGTCTCGTAGCTAATCGCG 58.335 55.000 0.00 0.00 45.59 5.87
381 416 2.690786 AGCTAATCGCGTTTGTACCAA 58.309 42.857 12.54 0.00 45.59 3.67
396 431 5.099042 TGTACCAAAGAGAGAATAAGCCC 57.901 43.478 0.00 0.00 0.00 5.19
397 432 3.268023 ACCAAAGAGAGAATAAGCCCG 57.732 47.619 0.00 0.00 0.00 6.13
402 437 2.683768 AGAGAGAATAAGCCCGTGGAT 58.316 47.619 0.00 0.00 0.00 3.41
406 441 3.070018 GAGAATAAGCCCGTGGATCATG 58.930 50.000 0.00 0.00 0.00 3.07
413 448 3.568000 CCGTGGATCATGGGTGAAA 57.432 52.632 0.00 0.00 38.01 2.69
414 449 1.382522 CCGTGGATCATGGGTGAAAG 58.617 55.000 0.00 0.00 38.01 2.62
415 450 0.734889 CGTGGATCATGGGTGAAAGC 59.265 55.000 0.00 0.00 38.01 3.51
418 453 1.353103 GATCATGGGTGAAAGCGCG 59.647 57.895 0.00 0.00 38.01 6.86
420 455 4.817063 CATGGGTGAAAGCGCGCG 62.817 66.667 28.44 28.44 40.02 6.86
443 492 1.623542 GCGGGGGTCAACCTACTCAT 61.624 60.000 0.00 0.00 40.03 2.90
464 514 7.292120 ACTCATTATAGATGGGCTTTCTCTTCT 59.708 37.037 0.00 0.00 0.00 2.85
469 520 2.550830 TGGGCTTTCTCTTCTGTGTC 57.449 50.000 0.00 0.00 0.00 3.67
478 529 6.567511 GCTTTCTCTTCTGTGTCCATTCTTTC 60.568 42.308 0.00 0.00 0.00 2.62
479 530 5.815233 TCTCTTCTGTGTCCATTCTTTCT 57.185 39.130 0.00 0.00 0.00 2.52
499 550 9.965824 TCTTTCTTTTGCTGTAAAGATAAAAGG 57.034 29.630 16.52 6.91 42.11 3.11
503 554 9.520515 TCTTTTGCTGTAAAGATAAAAGGAGAT 57.479 29.630 16.52 0.00 38.78 2.75
528 579 2.512485 TTTGGAACTGCTTACGTCGA 57.488 45.000 0.00 0.00 0.00 4.20
530 581 0.242825 TGGAACTGCTTACGTCGAGG 59.757 55.000 3.03 3.03 0.00 4.63
550 1322 0.381801 AACAACAAAGAGCAGTGCGG 59.618 50.000 10.00 0.94 0.00 5.69
551 1323 0.748005 ACAACAAAGAGCAGTGCGGT 60.748 50.000 10.00 0.00 0.00 5.68
601 1373 5.392767 TGACACCTTCTCTCTAACATGTC 57.607 43.478 0.00 0.00 36.58 3.06
602 1374 5.080337 TGACACCTTCTCTCTAACATGTCT 58.920 41.667 0.00 0.00 36.89 3.41
604 1376 6.375736 TGACACCTTCTCTCTAACATGTCTAG 59.624 42.308 0.00 3.89 36.89 2.43
605 1377 6.249951 ACACCTTCTCTCTAACATGTCTAGT 58.750 40.000 0.00 0.00 0.00 2.57
609 1381 7.032580 CCTTCTCTCTAACATGTCTAGTTGTG 58.967 42.308 0.00 3.72 0.00 3.33
611 1383 5.073311 TCTCTAACATGTCTAGTTGTGGC 57.927 43.478 0.00 0.00 0.00 5.01
612 1384 4.772624 TCTCTAACATGTCTAGTTGTGGCT 59.227 41.667 0.00 0.00 0.00 4.75
613 1385 5.073311 TCTAACATGTCTAGTTGTGGCTC 57.927 43.478 0.00 0.00 0.00 4.70
614 1386 4.772624 TCTAACATGTCTAGTTGTGGCTCT 59.227 41.667 0.00 0.00 0.00 4.09
615 1387 3.601443 ACATGTCTAGTTGTGGCTCTC 57.399 47.619 0.00 0.00 0.00 3.20
616 1388 2.899900 ACATGTCTAGTTGTGGCTCTCA 59.100 45.455 0.00 0.00 0.00 3.27
617 1389 3.324846 ACATGTCTAGTTGTGGCTCTCAA 59.675 43.478 0.00 0.00 0.00 3.02
618 1390 3.386768 TGTCTAGTTGTGGCTCTCAAC 57.613 47.619 10.34 10.34 43.51 3.18
619 1391 2.698274 TGTCTAGTTGTGGCTCTCAACA 59.302 45.455 16.86 0.00 44.97 3.33
620 1392 3.133901 TGTCTAGTTGTGGCTCTCAACAA 59.866 43.478 16.86 3.99 44.97 2.83
621 1393 4.127171 GTCTAGTTGTGGCTCTCAACAAA 58.873 43.478 16.86 8.05 44.97 2.83
622 1394 4.574828 GTCTAGTTGTGGCTCTCAACAAAA 59.425 41.667 16.86 6.41 44.97 2.44
623 1395 5.065988 GTCTAGTTGTGGCTCTCAACAAAAA 59.934 40.000 16.86 4.78 44.97 1.94
678 1451 0.317269 TTCGTCGACCTTCACGTGTC 60.317 55.000 16.51 4.54 37.30 3.67
682 1455 3.932289 GACCTTCACGTGTCGGTG 58.068 61.111 27.52 12.19 39.29 4.94
693 1466 3.649986 GTCGGTGCAGCTGCGTTT 61.650 61.111 32.11 0.00 45.83 3.60
694 1467 2.899838 TCGGTGCAGCTGCGTTTT 60.900 55.556 32.11 0.00 45.83 2.43
702 1475 3.049206 TGCAGCTGCGTTTTATTTTGTC 58.951 40.909 32.11 2.73 45.83 3.18
723 1502 8.861033 TTGTCATCAACAAGAATGAAAGAAAG 57.139 30.769 0.00 0.00 42.95 2.62
725 1504 9.119418 TGTCATCAACAAGAATGAAAGAAAGTA 57.881 29.630 0.00 0.00 34.03 2.24
742 1521 6.493166 AGAAAGTATCATGGTTTCCATTCCA 58.507 36.000 0.00 0.00 42.23 3.53
743 1522 6.953520 AGAAAGTATCATGGTTTCCATTCCAA 59.046 34.615 0.00 0.00 42.23 3.53
744 1523 6.780457 AAGTATCATGGTTTCCATTCCAAG 57.220 37.500 0.00 0.00 42.23 3.61
745 1524 4.646492 AGTATCATGGTTTCCATTCCAAGC 59.354 41.667 0.00 0.00 42.23 4.01
746 1525 2.886913 TCATGGTTTCCATTCCAAGCA 58.113 42.857 0.00 0.00 42.23 3.91
747 1526 2.827322 TCATGGTTTCCATTCCAAGCAG 59.173 45.455 0.00 0.00 42.23 4.24
816 1617 7.870509 TTTGGTGGATTCAGAAGATATCAAG 57.129 36.000 5.32 0.00 0.00 3.02
817 1618 6.813293 TGGTGGATTCAGAAGATATCAAGA 57.187 37.500 5.32 0.00 0.00 3.02
819 1620 5.994668 GGTGGATTCAGAAGATATCAAGACC 59.005 44.000 5.32 0.00 0.00 3.85
821 1622 7.050377 GTGGATTCAGAAGATATCAAGACCAA 58.950 38.462 5.32 0.00 0.00 3.67
822 1623 7.718753 GTGGATTCAGAAGATATCAAGACCAAT 59.281 37.037 5.32 0.00 0.00 3.16
824 1625 7.935755 GGATTCAGAAGATATCAAGACCAATCA 59.064 37.037 5.32 0.00 0.00 2.57
825 1626 8.674263 ATTCAGAAGATATCAAGACCAATCAC 57.326 34.615 5.32 0.00 0.00 3.06
827 1628 6.156775 TCAGAAGATATCAAGACCAATCACCA 59.843 38.462 5.32 0.00 0.00 4.17
829 1630 7.012138 CAGAAGATATCAAGACCAATCACCAAG 59.988 40.741 5.32 0.00 0.00 3.61
830 1631 6.319048 AGATATCAAGACCAATCACCAAGT 57.681 37.500 5.32 0.00 0.00 3.16
831 1632 6.118170 AGATATCAAGACCAATCACCAAGTG 58.882 40.000 5.32 0.00 34.45 3.16
832 1633 2.229792 TCAAGACCAATCACCAAGTGC 58.770 47.619 0.00 0.00 32.98 4.40
833 1634 1.955778 CAAGACCAATCACCAAGTGCA 59.044 47.619 0.00 0.00 32.98 4.57
834 1635 2.361757 CAAGACCAATCACCAAGTGCAA 59.638 45.455 0.00 0.00 32.98 4.08
835 1636 2.665165 AGACCAATCACCAAGTGCAAA 58.335 42.857 0.00 0.00 32.98 3.68
836 1637 2.362077 AGACCAATCACCAAGTGCAAAC 59.638 45.455 0.00 0.00 32.98 2.93
837 1638 1.066908 ACCAATCACCAAGTGCAAACG 59.933 47.619 0.00 0.00 32.98 3.60
838 1639 1.130955 CAATCACCAAGTGCAAACGC 58.869 50.000 0.00 0.00 32.98 4.84
839 1640 1.032014 AATCACCAAGTGCAAACGCT 58.968 45.000 0.00 0.00 38.63 5.07
840 1641 0.593128 ATCACCAAGTGCAAACGCTC 59.407 50.000 0.00 0.00 34.90 5.03
1517 2393 4.714632 TCAGTTTCTCCGTCCTTGAAAAT 58.285 39.130 0.00 0.00 32.50 1.82
1519 2395 6.292923 TCAGTTTCTCCGTCCTTGAAAATTA 58.707 36.000 0.00 0.00 32.50 1.40
1523 2399 8.471609 AGTTTCTCCGTCCTTGAAAATTAAAAA 58.528 29.630 0.00 0.00 32.50 1.94
1526 2403 9.825109 TTCTCCGTCCTTGAAAATTAAAAATTT 57.175 25.926 0.00 0.00 0.00 1.82
1554 2431 0.679640 AGGAGCTCACCGTCTCTCTG 60.680 60.000 17.19 0.00 34.73 3.35
1564 2441 3.254657 CACCGTCTCTCTGTCTCTCTTTT 59.745 47.826 0.00 0.00 0.00 2.27
1575 2452 3.136443 TGTCTCTCTTTTCATGGTGGTGT 59.864 43.478 0.00 0.00 0.00 4.16
1576 2453 3.748568 GTCTCTCTTTTCATGGTGGTGTC 59.251 47.826 0.00 0.00 0.00 3.67
1711 2603 3.057734 CAACACCTTCTTACACCTCGAC 58.942 50.000 0.00 0.00 0.00 4.20
1714 2606 0.535797 CCTTCTTACACCTCGACCCC 59.464 60.000 0.00 0.00 0.00 4.95
1722 2614 1.152096 ACCTCGACCCCCTTCTTGT 60.152 57.895 0.00 0.00 0.00 3.16
1725 2617 1.610886 CCTCGACCCCCTTCTTGTTTC 60.611 57.143 0.00 0.00 0.00 2.78
1727 2619 1.071699 TCGACCCCCTTCTTGTTTCTG 59.928 52.381 0.00 0.00 0.00 3.02
1736 2629 6.350445 CCCCCTTCTTGTTTCTGATAATGTTG 60.350 42.308 0.00 0.00 0.00 3.33
1745 2638 7.829725 TGTTTCTGATAATGTTGCAATAGCTT 58.170 30.769 0.59 0.00 42.74 3.74
1748 2659 6.267817 TCTGATAATGTTGCAATAGCTTTGC 58.732 36.000 20.06 20.06 45.11 3.68
1760 2671 5.570589 GCAATAGCTTTGCTGTCAGTAAAAG 59.429 40.000 15.69 17.31 40.10 2.27
1904 2819 5.106555 GCTGCTTACTTTGCTCATGTTCTTA 60.107 40.000 0.00 0.00 0.00 2.10
1921 2836 9.177608 CATGTTCTTAAGGAATCTGATTAACCA 57.822 33.333 2.28 0.00 36.24 3.67
1922 2837 9.927081 ATGTTCTTAAGGAATCTGATTAACCAT 57.073 29.630 2.28 0.00 36.24 3.55
1928 2843 5.831103 AGGAATCTGATTAACCATGGTGTT 58.169 37.500 20.60 6.17 0.00 3.32
1954 2869 4.916831 CGTGTTTTGAATCAATTGCTGCTA 59.083 37.500 0.00 0.00 0.00 3.49
2180 3100 7.648142 ACTGTATTATTTGTGTTCAACCTGTG 58.352 34.615 0.00 0.00 32.93 3.66
2354 3279 5.243730 GCCTCTTCAGATACTCAAGCTCTAT 59.756 44.000 0.00 0.00 0.00 1.98
2504 3435 4.948847 ACCAAGTTTCCTTGCTGAATTTC 58.051 39.130 0.00 0.00 45.57 2.17
2609 3547 5.335348 GCGGAAAGGTAAAATTAACAGAGCA 60.335 40.000 0.00 0.00 0.00 4.26
2612 3550 6.866770 GGAAAGGTAAAATTAACAGAGCAACC 59.133 38.462 0.00 0.00 0.00 3.77
2615 3553 6.924111 AGGTAAAATTAACAGAGCAACCATG 58.076 36.000 0.00 0.00 0.00 3.66
2634 3572 3.678056 TGTCTGGAATTGCGAGTTACT 57.322 42.857 0.00 0.00 0.00 2.24
2635 3573 3.585862 TGTCTGGAATTGCGAGTTACTC 58.414 45.455 1.64 1.64 0.00 2.59
2636 3574 2.930682 GTCTGGAATTGCGAGTTACTCC 59.069 50.000 6.80 0.63 0.00 3.85
2637 3575 2.093658 TCTGGAATTGCGAGTTACTCCC 60.094 50.000 6.80 0.00 0.00 4.30
2638 3576 1.906574 TGGAATTGCGAGTTACTCCCT 59.093 47.619 6.80 0.00 0.00 4.20
2639 3577 2.093658 TGGAATTGCGAGTTACTCCCTC 60.094 50.000 6.80 0.00 0.00 4.30
2640 3578 2.168728 GGAATTGCGAGTTACTCCCTCT 59.831 50.000 6.80 0.00 0.00 3.69
2641 3579 2.969628 ATTGCGAGTTACTCCCTCTG 57.030 50.000 6.80 0.00 0.00 3.35
2642 3580 1.629043 TTGCGAGTTACTCCCTCTGT 58.371 50.000 6.80 0.00 0.00 3.41
2643 3581 2.502142 TGCGAGTTACTCCCTCTGTA 57.498 50.000 6.80 0.00 0.00 2.74
2644 3582 2.799017 TGCGAGTTACTCCCTCTGTAA 58.201 47.619 6.80 0.00 0.00 2.41
2645 3583 3.159472 TGCGAGTTACTCCCTCTGTAAA 58.841 45.455 6.80 0.00 32.58 2.01
2646 3584 3.057033 TGCGAGTTACTCCCTCTGTAAAC 60.057 47.826 6.80 0.00 32.58 2.01
2647 3585 3.193056 GCGAGTTACTCCCTCTGTAAACT 59.807 47.826 6.80 0.00 32.58 2.66
2648 3586 4.397417 GCGAGTTACTCCCTCTGTAAACTA 59.603 45.833 6.80 0.00 32.58 2.24
2649 3587 5.105997 GCGAGTTACTCCCTCTGTAAACTAA 60.106 44.000 6.80 0.00 32.58 2.24
2650 3588 6.405619 GCGAGTTACTCCCTCTGTAAACTAAT 60.406 42.308 6.80 0.00 32.58 1.73
2651 3589 7.201767 GCGAGTTACTCCCTCTGTAAACTAATA 60.202 40.741 6.80 0.00 32.58 0.98
2652 3590 8.848182 CGAGTTACTCCCTCTGTAAACTAATAT 58.152 37.037 6.80 0.00 32.58 1.28
2658 3596 9.145442 ACTCCCTCTGTAAACTAATATAAGACC 57.855 37.037 0.00 0.00 0.00 3.85
2659 3597 9.369672 CTCCCTCTGTAAACTAATATAAGACCT 57.630 37.037 0.00 0.00 0.00 3.85
2660 3598 9.725206 TCCCTCTGTAAACTAATATAAGACCTT 57.275 33.333 0.00 0.00 0.00 3.50
2704 3643 2.697431 TTGTGCCAAACTAATGCGTC 57.303 45.000 0.00 0.00 0.00 5.19
2711 3650 4.025229 TGCCAAACTAATGCGTCGATTATC 60.025 41.667 0.00 0.00 0.00 1.75
2718 3657 5.918576 ACTAATGCGTCGATTATCATTTCGA 59.081 36.000 0.00 0.00 41.70 3.71
2748 3689 3.125316 GTGTGTTGTTCAGCAGTATAGCC 59.875 47.826 0.00 0.00 34.23 3.93
2756 3697 3.114825 GCAGTATAGCCCGGCCCAA 62.115 63.158 5.55 0.00 0.00 4.12
2777 3718 6.064717 CCAATATCTAAAAGCCCTGCTAACT 58.935 40.000 0.00 0.00 38.25 2.24
2779 3720 7.173390 CCAATATCTAAAAGCCCTGCTAACTAC 59.827 40.741 0.00 0.00 38.25 2.73
2780 3721 5.959583 ATCTAAAAGCCCTGCTAACTACT 57.040 39.130 0.00 0.00 38.25 2.57
2781 3722 5.340439 TCTAAAAGCCCTGCTAACTACTC 57.660 43.478 0.00 0.00 38.25 2.59
2782 3723 3.351794 AAAAGCCCTGCTAACTACTCC 57.648 47.619 0.00 0.00 38.25 3.85
2783 3724 1.205055 AAGCCCTGCTAACTACTCCC 58.795 55.000 0.00 0.00 38.25 4.30
2784 3725 0.340208 AGCCCTGCTAACTACTCCCT 59.660 55.000 0.00 0.00 36.99 4.20
2785 3726 0.753867 GCCCTGCTAACTACTCCCTC 59.246 60.000 0.00 0.00 0.00 4.30
2786 3727 1.689892 GCCCTGCTAACTACTCCCTCT 60.690 57.143 0.00 0.00 0.00 3.69
2787 3728 2.753247 CCCTGCTAACTACTCCCTCTT 58.247 52.381 0.00 0.00 0.00 2.85
2788 3729 2.432510 CCCTGCTAACTACTCCCTCTTG 59.567 54.545 0.00 0.00 0.00 3.02
2789 3730 3.100671 CCTGCTAACTACTCCCTCTTGT 58.899 50.000 0.00 0.00 0.00 3.16
2790 3731 3.131400 CCTGCTAACTACTCCCTCTTGTC 59.869 52.174 0.00 0.00 0.00 3.18
2791 3732 3.097614 TGCTAACTACTCCCTCTTGTCC 58.902 50.000 0.00 0.00 0.00 4.02
2792 3733 2.431419 GCTAACTACTCCCTCTTGTCCC 59.569 54.545 0.00 0.00 0.00 4.46
2793 3734 2.715763 AACTACTCCCTCTTGTCCCA 57.284 50.000 0.00 0.00 0.00 4.37
2794 3735 2.715763 ACTACTCCCTCTTGTCCCAA 57.284 50.000 0.00 0.00 0.00 4.12
2795 3736 2.986050 ACTACTCCCTCTTGTCCCAAA 58.014 47.619 0.00 0.00 0.00 3.28
2796 3737 3.323775 ACTACTCCCTCTTGTCCCAAAA 58.676 45.455 0.00 0.00 0.00 2.44
2797 3738 3.916989 ACTACTCCCTCTTGTCCCAAAAT 59.083 43.478 0.00 0.00 0.00 1.82
2798 3739 5.098663 ACTACTCCCTCTTGTCCCAAAATA 58.901 41.667 0.00 0.00 0.00 1.40
2799 3740 5.731678 ACTACTCCCTCTTGTCCCAAAATAT 59.268 40.000 0.00 0.00 0.00 1.28
2800 3741 6.906901 ACTACTCCCTCTTGTCCCAAAATATA 59.093 38.462 0.00 0.00 0.00 0.86
2801 3742 6.652205 ACTCCCTCTTGTCCCAAAATATAA 57.348 37.500 0.00 0.00 0.00 0.98
2802 3743 6.663734 ACTCCCTCTTGTCCCAAAATATAAG 58.336 40.000 0.00 0.00 0.00 1.73
2803 3744 6.447084 ACTCCCTCTTGTCCCAAAATATAAGA 59.553 38.462 0.00 0.00 0.00 2.10
2804 3745 6.659824 TCCCTCTTGTCCCAAAATATAAGAC 58.340 40.000 0.00 0.00 0.00 3.01
2805 3746 5.527582 CCCTCTTGTCCCAAAATATAAGACG 59.472 44.000 0.00 0.00 0.00 4.18
2806 3747 6.113411 CCTCTTGTCCCAAAATATAAGACGT 58.887 40.000 0.00 0.00 0.00 4.34
2807 3748 6.598064 CCTCTTGTCCCAAAATATAAGACGTT 59.402 38.462 0.00 0.00 0.00 3.99
2808 3749 7.120726 CCTCTTGTCCCAAAATATAAGACGTTT 59.879 37.037 0.00 0.00 0.00 3.60
2809 3750 8.398878 TCTTGTCCCAAAATATAAGACGTTTT 57.601 30.769 0.00 0.00 0.00 2.43
2810 3751 8.852135 TCTTGTCCCAAAATATAAGACGTTTTT 58.148 29.630 0.00 0.00 0.00 1.94
2813 3754 9.896263 TGTCCCAAAATATAAGACGTTTTTAAC 57.104 29.630 0.00 0.00 0.00 2.01
2814 3755 9.896263 GTCCCAAAATATAAGACGTTTTTAACA 57.104 29.630 0.00 0.00 0.00 2.41
2815 3756 9.896263 TCCCAAAATATAAGACGTTTTTAACAC 57.104 29.630 0.00 0.00 0.00 3.32
2816 3757 9.902196 CCCAAAATATAAGACGTTTTTAACACT 57.098 29.630 0.00 0.00 0.00 3.55
2824 3765 9.971922 ATAAGACGTTTTTAACACTACACTAGT 57.028 29.630 0.00 0.00 40.28 2.57
2839 3780 8.732746 ACTACACTAGTGTCAAAAATGTTCTT 57.267 30.769 31.11 4.99 43.74 2.52
2840 3781 9.826574 ACTACACTAGTGTCAAAAATGTTCTTA 57.173 29.630 31.11 8.36 43.74 2.10
2849 3790 9.520204 GTGTCAAAAATGTTCTTATATCATGGG 57.480 33.333 0.00 0.00 0.00 4.00
2850 3791 9.473007 TGTCAAAAATGTTCTTATATCATGGGA 57.527 29.630 0.00 0.00 0.00 4.37
2851 3792 9.736023 GTCAAAAATGTTCTTATATCATGGGAC 57.264 33.333 0.00 0.00 0.00 4.46
2852 3793 8.620416 TCAAAAATGTTCTTATATCATGGGACG 58.380 33.333 0.00 0.00 0.00 4.79
2853 3794 7.510549 AAAATGTTCTTATATCATGGGACGG 57.489 36.000 0.00 0.00 0.00 4.79
2854 3795 6.433847 AATGTTCTTATATCATGGGACGGA 57.566 37.500 0.00 0.00 0.00 4.69
2855 3796 5.468540 TGTTCTTATATCATGGGACGGAG 57.531 43.478 0.00 0.00 0.00 4.63
2856 3797 4.283467 TGTTCTTATATCATGGGACGGAGG 59.717 45.833 0.00 0.00 0.00 4.30
2857 3798 3.441101 TCTTATATCATGGGACGGAGGG 58.559 50.000 0.00 0.00 0.00 4.30
2858 3799 3.076937 TCTTATATCATGGGACGGAGGGA 59.923 47.826 0.00 0.00 0.00 4.20
2859 3800 1.944177 ATATCATGGGACGGAGGGAG 58.056 55.000 0.00 0.00 0.00 4.30
2860 3801 0.561184 TATCATGGGACGGAGGGAGT 59.439 55.000 0.00 0.00 0.00 3.85
2861 3802 0.561184 ATCATGGGACGGAGGGAGTA 59.439 55.000 0.00 0.00 0.00 2.59
2862 3803 0.337082 TCATGGGACGGAGGGAGTAA 59.663 55.000 0.00 0.00 0.00 2.24
2863 3804 0.464452 CATGGGACGGAGGGAGTAAC 59.536 60.000 0.00 0.00 0.00 2.50
2864 3805 1.041447 ATGGGACGGAGGGAGTAACG 61.041 60.000 0.00 0.00 0.00 3.18
2893 3834 1.180029 GCTGTGCTGATTGGGTCATT 58.820 50.000 0.00 0.00 35.97 2.57
2895 3836 1.475280 CTGTGCTGATTGGGTCATTGG 59.525 52.381 0.00 0.00 35.97 3.16
2896 3837 0.819582 GTGCTGATTGGGTCATTGGG 59.180 55.000 0.00 0.00 35.97 4.12
2897 3838 0.703488 TGCTGATTGGGTCATTGGGA 59.297 50.000 0.00 0.00 35.97 4.37
2898 3839 1.288633 TGCTGATTGGGTCATTGGGAT 59.711 47.619 0.00 0.00 35.97 3.85
2899 3840 2.513317 TGCTGATTGGGTCATTGGGATA 59.487 45.455 0.00 0.00 35.97 2.59
2900 3841 3.152341 GCTGATTGGGTCATTGGGATAG 58.848 50.000 0.00 0.00 35.97 2.08
2901 3842 3.152341 CTGATTGGGTCATTGGGATAGC 58.848 50.000 0.00 0.00 35.97 2.97
2976 3918 4.876107 ACAGGCCGTATCAGATAAAACTTG 59.124 41.667 0.00 0.00 0.00 3.16
3000 3942 6.947733 TGGGATTGAACAGTCTGAATAAACAT 59.052 34.615 6.91 0.00 0.00 2.71
3057 4003 1.545582 TGGCAAGCATAAAAGAGGTGC 59.454 47.619 0.00 0.00 39.10 5.01
3064 4010 4.010349 AGCATAAAAGAGGTGCAGTTACC 58.990 43.478 0.00 0.00 41.19 2.85
3148 4095 5.381174 TTTTCAGCCTTTCATCATGACAG 57.619 39.130 0.00 0.00 0.00 3.51
3192 4141 4.085357 TCTAGCCACATAAATCGCCAAT 57.915 40.909 0.00 0.00 0.00 3.16
3196 4145 3.195396 AGCCACATAAATCGCCAATTGTT 59.805 39.130 4.43 0.00 0.00 2.83
3208 4157 3.241701 GCCAATTGTTGTCCATACGTTG 58.758 45.455 4.43 0.00 0.00 4.10
3229 4178 2.350772 GGACTGCATTTTTCACTGTCCG 60.351 50.000 0.83 0.00 40.90 4.79
3242 4191 5.500645 TCACTGTCCGTCTTCTGTATATG 57.499 43.478 0.00 0.00 0.00 1.78
3244 4193 6.117488 TCACTGTCCGTCTTCTGTATATGTA 58.883 40.000 0.00 0.00 0.00 2.29
3320 4270 3.464111 GGCATACTTTACCGCCTTCTA 57.536 47.619 0.00 0.00 41.50 2.10
3325 4275 3.160777 ACTTTACCGCCTTCTATCACG 57.839 47.619 0.00 0.00 0.00 4.35
3328 4278 2.280186 CCGCCTTCTATCACGGGC 60.280 66.667 0.00 0.00 41.95 6.13
3331 4281 1.429148 CGCCTTCTATCACGGGCAAC 61.429 60.000 0.00 0.00 44.27 4.17
3332 4282 0.392461 GCCTTCTATCACGGGCAACA 60.392 55.000 0.00 0.00 43.59 3.33
3335 4285 2.213499 CTTCTATCACGGGCAACATCC 58.787 52.381 0.00 0.00 39.74 3.51
3336 4286 1.199615 TCTATCACGGGCAACATCCA 58.800 50.000 0.00 0.00 39.74 3.41
3338 4288 1.670811 CTATCACGGGCAACATCCAAC 59.329 52.381 0.00 0.00 39.74 3.77
3341 4291 1.603455 ACGGGCAACATCCAACCAG 60.603 57.895 0.00 0.00 39.74 4.00
3342 4292 1.303236 CGGGCAACATCCAACCAGA 60.303 57.895 0.00 0.00 39.74 3.86
3343 4293 0.893270 CGGGCAACATCCAACCAGAA 60.893 55.000 0.00 0.00 39.74 3.02
3344 4294 1.337118 GGGCAACATCCAACCAGAAA 58.663 50.000 0.00 0.00 39.74 2.52
3345 4295 1.901833 GGGCAACATCCAACCAGAAAT 59.098 47.619 0.00 0.00 39.74 2.17
3346 4296 2.302733 GGGCAACATCCAACCAGAAATT 59.697 45.455 0.00 0.00 39.74 1.82
3348 4298 4.020662 GGGCAACATCCAACCAGAAATTTA 60.021 41.667 0.00 0.00 39.74 1.40
3349 4299 5.512232 GGGCAACATCCAACCAGAAATTTAA 60.512 40.000 0.00 0.00 39.74 1.52
3350 4300 5.994668 GGCAACATCCAACCAGAAATTTAAA 59.005 36.000 0.00 0.00 0.00 1.52
3351 4301 6.484977 GGCAACATCCAACCAGAAATTTAAAA 59.515 34.615 0.00 0.00 0.00 1.52
3352 4302 7.012799 GGCAACATCCAACCAGAAATTTAAAAA 59.987 33.333 0.00 0.00 0.00 1.94
3354 4304 9.108284 CAACATCCAACCAGAAATTTAAAAACT 57.892 29.630 0.00 0.00 0.00 2.66
3355 4305 9.679661 AACATCCAACCAGAAATTTAAAAACTT 57.320 25.926 0.00 0.00 0.00 2.66
3379 4365 5.007332 TCAGATTCATGATTGTCATTGCTCG 59.993 40.000 0.00 0.00 34.28 5.03
3382 4368 4.604843 TCATGATTGTCATTGCTCGAAC 57.395 40.909 0.00 0.00 34.28 3.95
3384 4370 2.777094 TGATTGTCATTGCTCGAACCA 58.223 42.857 0.00 0.00 0.00 3.67
3390 4376 3.567585 TGTCATTGCTCGAACCATTCAAA 59.432 39.130 0.00 0.00 0.00 2.69
3391 4377 4.037327 TGTCATTGCTCGAACCATTCAAAA 59.963 37.500 0.00 0.00 0.00 2.44
3392 4378 4.618489 GTCATTGCTCGAACCATTCAAAAG 59.382 41.667 0.00 0.00 0.00 2.27
3398 4384 5.106317 TGCTCGAACCATTCAAAAGATTACC 60.106 40.000 0.00 0.00 0.00 2.85
3399 4385 5.106317 GCTCGAACCATTCAAAAGATTACCA 60.106 40.000 0.00 0.00 0.00 3.25
3402 4388 6.072728 TCGAACCATTCAAAAGATTACCACTG 60.073 38.462 0.00 0.00 0.00 3.66
3411 4397 6.371548 TCAAAAGATTACCACTGCTGTATGTC 59.628 38.462 0.00 0.00 0.00 3.06
3520 4506 1.203038 TGGCTCAACAACATCCACCAT 60.203 47.619 0.00 0.00 0.00 3.55
3565 4551 1.102978 ATCTTTTCCCGCAAATCCCG 58.897 50.000 0.00 0.00 0.00 5.14
3595 4581 2.693591 TCTAGTGGAGGCGGTAAGAATG 59.306 50.000 0.00 0.00 0.00 2.67
3602 4588 2.104963 GAGGCGGTAAGAATGGAATCCT 59.895 50.000 0.00 0.00 0.00 3.24
3608 4594 5.763204 GCGGTAAGAATGGAATCCTTTGATA 59.237 40.000 5.06 0.00 0.00 2.15
3617 4603 4.473444 GGAATCCTTTGATATTCCCTGCA 58.527 43.478 0.00 0.00 43.58 4.41
3619 4607 4.524802 ATCCTTTGATATTCCCTGCACA 57.475 40.909 0.00 0.00 0.00 4.57
3625 4613 3.205338 TGATATTCCCTGCACATCGTTG 58.795 45.455 0.00 0.00 0.00 4.10
3631 4619 2.002586 CCCTGCACATCGTTGTCTTAG 58.997 52.381 0.00 0.00 32.34 2.18
3634 4622 2.068519 TGCACATCGTTGTCTTAGCAG 58.931 47.619 5.52 0.00 32.34 4.24
3642 4630 3.575256 TCGTTGTCTTAGCAGGAACCTTA 59.425 43.478 0.00 0.00 0.00 2.69
3646 4634 3.908103 TGTCTTAGCAGGAACCTTACCTT 59.092 43.478 0.00 0.00 35.35 3.50
3649 4638 4.468868 TCTTAGCAGGAACCTTACCTTACC 59.531 45.833 0.00 0.00 35.35 2.85
3653 4642 4.786454 AGCAGGAACCTTACCTTACCAATA 59.214 41.667 0.00 0.00 35.35 1.90
3726 4715 0.745468 GGAAGTACTACAGGGAGCCG 59.255 60.000 0.00 0.00 0.00 5.52
3735 4724 2.120718 AGGGAGCCGGACAAGTCT 59.879 61.111 5.05 0.00 0.00 3.24
3747 4736 2.852075 AAGTCTGGCCCGTTCCCA 60.852 61.111 0.00 0.00 0.00 4.37
3765 4754 1.530419 ATTCCACCTGTTTGGCGCA 60.530 52.632 10.83 0.00 40.22 6.09
3849 4838 2.668550 GACCCAAAACTCGCCGCT 60.669 61.111 0.00 0.00 0.00 5.52
3892 4881 6.882610 AACAACATCAAGCATACTCTTTGA 57.117 33.333 0.00 0.00 0.00 2.69
3894 4883 5.106396 ACAACATCAAGCATACTCTTTGAGC 60.106 40.000 0.00 0.00 32.04 4.26
3922 4915 0.174389 CTCACCATCACCTGACCGAG 59.826 60.000 0.00 0.00 0.00 4.63
3983 4976 1.188863 GGCAAATCAAGCAGGTGGAT 58.811 50.000 0.00 0.00 0.00 3.41
3988 4981 2.202236 ATCAAGCAGGTGGATGGCGT 62.202 55.000 0.00 0.00 0.00 5.68
4099 5092 2.397413 CTTTGGACCAGAGCCACGGT 62.397 60.000 0.00 0.00 38.56 4.83
4164 5158 4.430007 TCATTGTTCGATACTACAGCACC 58.570 43.478 0.00 0.00 0.00 5.01
4235 5230 7.522889 GCATATACTACTGCTGTGAAGATCTCA 60.523 40.741 6.48 0.00 35.49 3.27
4248 5243 5.019470 TGAAGATCTCAGCTTAACTCCAGA 58.981 41.667 0.00 0.00 0.00 3.86
4249 5244 5.660417 TGAAGATCTCAGCTTAACTCCAGAT 59.340 40.000 0.00 0.00 30.60 2.90
4250 5245 5.789643 AGATCTCAGCTTAACTCCAGATC 57.210 43.478 0.00 0.00 39.87 2.75
4276 5271 7.744087 TCTTTGCACTAACATGTGAAATAGT 57.256 32.000 0.00 0.00 40.12 2.12
4350 5345 3.181465 TGGTCAGTTGTCCTCTTCAGAAC 60.181 47.826 0.00 0.00 0.00 3.01
4355 5350 0.318441 TGTCCTCTTCAGAACGCAGG 59.682 55.000 0.00 0.00 0.00 4.85
4378 5373 1.310933 GGCTCATTGCTGACCACAGG 61.311 60.000 0.00 0.00 43.62 4.00
4379 5374 1.930908 GCTCATTGCTGACCACAGGC 61.931 60.000 0.00 0.00 43.62 4.85
4380 5375 0.322277 CTCATTGCTGACCACAGGCT 60.322 55.000 0.00 0.00 43.62 4.58
4381 5376 0.983467 TCATTGCTGACCACAGGCTA 59.017 50.000 0.00 0.00 43.62 3.93
4548 5544 1.001406 AGCTGAGCTCTGTGTTACCAC 59.999 52.381 20.24 3.01 36.75 4.16
4589 5585 4.034510 CGGAAACTCCAGATCTTGTAATGC 59.965 45.833 0.00 0.00 35.91 3.56
4604 5600 0.700564 AATGCTGGAGGTGGTGTCAT 59.299 50.000 0.00 0.00 0.00 3.06
4622 5618 4.391830 TGTCATGCCGAATAAAAGTCTCAC 59.608 41.667 0.00 0.00 0.00 3.51
4625 5621 2.000447 GCCGAATAAAAGTCTCACGCT 59.000 47.619 0.00 0.00 0.00 5.07
4632 5628 6.085068 CGAATAAAAGTCTCACGCTGTTTTTC 59.915 38.462 0.00 0.00 0.00 2.29
4639 5635 2.614057 CTCACGCTGTTTTTCTGGTCTT 59.386 45.455 0.00 0.00 0.00 3.01
4643 5639 2.287009 CGCTGTTTTTCTGGTCTTGTCC 60.287 50.000 0.00 0.00 0.00 4.02
4648 5644 1.305201 TTTCTGGTCTTGTCCGTTGC 58.695 50.000 0.00 0.00 0.00 4.17
4666 5662 0.313672 GCAGATTTTGCGGGTTGTCA 59.686 50.000 0.00 0.00 44.09 3.58
4670 5666 1.466950 GATTTTGCGGGTTGTCATCGA 59.533 47.619 0.00 0.00 0.00 3.59
4837 5845 2.029290 TCTAACTCGCACTTCCCAAGAC 60.029 50.000 0.00 0.00 0.00 3.01
4838 5846 0.250338 AACTCGCACTTCCCAAGACC 60.250 55.000 0.00 0.00 0.00 3.85
4839 5847 1.371183 CTCGCACTTCCCAAGACCA 59.629 57.895 0.00 0.00 0.00 4.02
4840 5848 0.250295 CTCGCACTTCCCAAGACCAA 60.250 55.000 0.00 0.00 0.00 3.67
4841 5849 0.534203 TCGCACTTCCCAAGACCAAC 60.534 55.000 0.00 0.00 0.00 3.77
4842 5850 0.817634 CGCACTTCCCAAGACCAACA 60.818 55.000 0.00 0.00 0.00 3.33
4843 5851 1.398692 GCACTTCCCAAGACCAACAA 58.601 50.000 0.00 0.00 0.00 2.83
4844 5852 1.338020 GCACTTCCCAAGACCAACAAG 59.662 52.381 0.00 0.00 0.00 3.16
4845 5853 2.930950 CACTTCCCAAGACCAACAAGA 58.069 47.619 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.859538 CACCAATGTTGCTCACACAAAC 59.140 45.455 0.00 0.00 38.61 2.93
26 27 0.768622 ACCACCACGGATTCTTCCAA 59.231 50.000 0.00 0.00 42.74 3.53
44 45 2.658268 GGCACAACAGCGGCAAAC 60.658 61.111 1.45 0.00 34.64 2.93
57 58 2.457366 TTCTCTTTCTCCTTCGGCAC 57.543 50.000 0.00 0.00 0.00 5.01
71 72 7.394923 TCTCTTTCCTAATCTCTCGTTTTCTCT 59.605 37.037 0.00 0.00 0.00 3.10
92 93 8.923270 CAGTCTATTTATCTCTCCCTTTCTCTT 58.077 37.037 0.00 0.00 0.00 2.85
112 114 5.562298 AGTCCTTTTGCTTAACCAGTCTA 57.438 39.130 0.00 0.00 0.00 2.59
150 166 8.262227 AGTTTTAGTGTATTCCATATCGGTTCA 58.738 33.333 0.00 0.00 35.57 3.18
168 190 5.222192 CCCCTACCCCACTAAAAGTTTTAGT 60.222 44.000 27.81 27.81 35.76 2.24
174 196 2.445806 ACCCCTACCCCACTAAAAGT 57.554 50.000 0.00 0.00 0.00 2.66
222 254 6.483640 GTCTCCTGGCGATGTATTAAGAAATT 59.516 38.462 0.00 0.00 0.00 1.82
239 271 0.397941 TTGCCTCAAGTGTCTCCTGG 59.602 55.000 0.00 0.00 0.00 4.45
247 279 3.691049 TTCGTTCTTTTGCCTCAAGTG 57.309 42.857 0.00 0.00 0.00 3.16
251 283 4.909696 TGAAATTCGTTCTTTTGCCTCA 57.090 36.364 0.00 0.00 37.13 3.86
312 344 4.574013 AGTTGTGAAAGAAGCTGAGAGTTG 59.426 41.667 0.00 0.00 0.00 3.16
313 345 4.574013 CAGTTGTGAAAGAAGCTGAGAGTT 59.426 41.667 0.00 0.00 0.00 3.01
314 346 4.125703 CAGTTGTGAAAGAAGCTGAGAGT 58.874 43.478 0.00 0.00 0.00 3.24
315 347 4.125703 ACAGTTGTGAAAGAAGCTGAGAG 58.874 43.478 0.00 0.00 0.00 3.20
316 348 4.142609 ACAGTTGTGAAAGAAGCTGAGA 57.857 40.909 0.00 0.00 0.00 3.27
320 352 5.904362 AAGAAACAGTTGTGAAAGAAGCT 57.096 34.783 0.00 0.00 0.00 3.74
321 353 7.540745 TGTTAAAGAAACAGTTGTGAAAGAAGC 59.459 33.333 0.00 0.00 43.22 3.86
335 369 5.234329 CGAGACTGCTCTTGTTAAAGAAACA 59.766 40.000 0.00 0.00 41.89 2.83
345 379 1.540267 AGCTACGAGACTGCTCTTGT 58.460 50.000 1.78 1.78 42.90 3.16
348 382 2.546368 CGATTAGCTACGAGACTGCTCT 59.454 50.000 0.00 0.00 39.06 4.09
381 416 2.467880 TCCACGGGCTTATTCTCTCTT 58.532 47.619 0.00 0.00 0.00 2.85
396 431 0.734889 GCTTTCACCCATGATCCACG 59.265 55.000 0.00 0.00 33.85 4.94
397 432 0.734889 CGCTTTCACCCATGATCCAC 59.265 55.000 0.00 0.00 33.85 4.02
402 437 3.430862 GCGCGCTTTCACCCATGA 61.431 61.111 26.67 0.00 0.00 3.07
421 456 4.342086 TAGGTTGACCCCCGCCCT 62.342 66.667 0.00 0.00 36.42 5.19
422 457 4.105553 GTAGGTTGACCCCCGCCC 62.106 72.222 0.00 0.00 36.42 6.13
423 458 3.007323 AGTAGGTTGACCCCCGCC 61.007 66.667 0.00 0.00 36.42 6.13
424 459 1.623542 ATGAGTAGGTTGACCCCCGC 61.624 60.000 0.00 0.00 36.42 6.13
425 460 0.909623 AATGAGTAGGTTGACCCCCG 59.090 55.000 0.00 0.00 36.42 5.73
427 462 6.295916 CCATCTATAATGAGTAGGTTGACCCC 60.296 46.154 0.00 0.00 36.42 4.95
432 481 6.365970 AGCCCATCTATAATGAGTAGGTTG 57.634 41.667 0.00 0.00 0.00 3.77
443 492 6.156949 ACACAGAAGAGAAAGCCCATCTATAA 59.843 38.462 0.00 0.00 0.00 0.98
464 514 4.402155 ACAGCAAAAGAAAGAATGGACACA 59.598 37.500 0.00 0.00 0.00 3.72
469 520 9.912634 TTATCTTTACAGCAAAAGAAAGAATGG 57.087 29.630 11.42 0.00 45.83 3.16
507 558 3.196463 TCGACGTAAGCAGTTCCAAAAA 58.804 40.909 0.00 0.00 45.62 1.94
512 563 0.524862 TCCTCGACGTAAGCAGTTCC 59.475 55.000 0.00 0.00 45.62 3.62
524 575 2.210116 TGCTCTTTGTTGTTCCTCGAC 58.790 47.619 0.00 0.00 0.00 4.20
528 579 1.678101 GCACTGCTCTTTGTTGTTCCT 59.322 47.619 0.00 0.00 0.00 3.36
530 581 1.597937 CCGCACTGCTCTTTGTTGTTC 60.598 52.381 0.00 0.00 0.00 3.18
550 1322 6.035843 CAGATGCAACCAACCATAACAATAC 58.964 40.000 0.00 0.00 0.00 1.89
551 1323 5.948758 TCAGATGCAACCAACCATAACAATA 59.051 36.000 0.00 0.00 0.00 1.90
601 1373 5.499139 TTTTTGTTGAGAGCCACAACTAG 57.501 39.130 15.54 0.00 45.08 2.57
622 1394 3.052036 GACATGCGCATCACAACTTTTT 58.948 40.909 22.51 0.00 0.00 1.94
623 1395 2.664916 GACATGCGCATCACAACTTTT 58.335 42.857 22.51 0.00 0.00 2.27
624 1396 1.400113 CGACATGCGCATCACAACTTT 60.400 47.619 22.51 0.00 0.00 2.66
667 1440 2.279851 TGCACCGACACGTGAAGG 60.280 61.111 25.01 24.80 35.68 3.46
678 1451 0.109781 AATAAAACGCAGCTGCACCG 60.110 50.000 36.03 23.12 42.21 4.94
679 1452 2.064573 AAATAAAACGCAGCTGCACC 57.935 45.000 36.03 9.67 42.21 5.01
681 1454 3.049206 GACAAAATAAAACGCAGCTGCA 58.951 40.909 36.03 18.59 42.21 4.41
682 1455 3.049206 TGACAAAATAAAACGCAGCTGC 58.951 40.909 29.12 29.12 37.78 5.25
723 1502 4.402155 TGCTTGGAATGGAAACCATGATAC 59.598 41.667 3.97 0.00 44.40 2.24
725 1504 3.443052 TGCTTGGAATGGAAACCATGAT 58.557 40.909 3.97 0.00 44.40 2.45
726 1505 2.827322 CTGCTTGGAATGGAAACCATGA 59.173 45.455 3.97 0.00 44.40 3.07
742 1521 2.159198 CCAAACACAACTGCTTCTGCTT 60.159 45.455 0.00 0.00 40.48 3.91
743 1522 1.406539 CCAAACACAACTGCTTCTGCT 59.593 47.619 0.00 0.00 40.48 4.24
744 1523 1.134946 ACCAAACACAACTGCTTCTGC 59.865 47.619 0.00 0.00 40.20 4.26
745 1524 2.223572 GGACCAAACACAACTGCTTCTG 60.224 50.000 0.00 0.00 0.00 3.02
746 1525 2.024414 GGACCAAACACAACTGCTTCT 58.976 47.619 0.00 0.00 0.00 2.85
747 1526 1.748493 TGGACCAAACACAACTGCTTC 59.252 47.619 0.00 0.00 0.00 3.86
812 1613 2.229792 GCACTTGGTGATTGGTCTTGA 58.770 47.619 1.57 0.00 35.23 3.02
815 1616 2.362077 GTTTGCACTTGGTGATTGGTCT 59.638 45.455 1.57 0.00 35.23 3.85
816 1617 2.742774 GTTTGCACTTGGTGATTGGTC 58.257 47.619 1.57 0.00 35.23 4.02
817 1618 1.066908 CGTTTGCACTTGGTGATTGGT 59.933 47.619 1.57 0.00 35.23 3.67
819 1620 1.130955 GCGTTTGCACTTGGTGATTG 58.869 50.000 1.57 0.00 42.15 2.67
821 1622 0.593128 GAGCGTTTGCACTTGGTGAT 59.407 50.000 1.57 0.00 46.23 3.06
822 1623 1.444119 GGAGCGTTTGCACTTGGTGA 61.444 55.000 1.57 0.00 46.23 4.02
824 1625 1.152963 AGGAGCGTTTGCACTTGGT 60.153 52.632 0.00 0.00 46.23 3.67
825 1626 1.576421 GAGGAGCGTTTGCACTTGG 59.424 57.895 0.00 0.00 46.23 3.61
827 1628 0.603975 GAGGAGGAGCGTTTGCACTT 60.604 55.000 0.00 0.00 46.23 3.16
829 1630 2.035442 GGAGGAGGAGCGTTTGCAC 61.035 63.158 0.00 0.00 46.23 4.57
830 1631 2.347490 GGAGGAGGAGCGTTTGCA 59.653 61.111 0.00 0.00 46.23 4.08
831 1632 2.815647 CGGAGGAGGAGCGTTTGC 60.816 66.667 0.00 0.00 43.24 3.68
931 1766 3.238497 TAGTGTGTGGCCACGGCT 61.238 61.111 30.07 26.34 44.92 5.52
943 1778 4.634883 CCGTATCCGAGCATATAGTAGTGT 59.365 45.833 0.00 0.00 35.63 3.55
949 1784 2.493713 GGCCGTATCCGAGCATATAG 57.506 55.000 0.00 0.00 35.63 1.31
1485 2361 0.608640 GAGAAACTGAGGCCGGAGAA 59.391 55.000 5.05 0.00 0.00 2.87
1517 2393 7.502226 TGAGCTCCTCTGAACAGAAATTTTTAA 59.498 33.333 12.15 0.00 36.94 1.52
1519 2395 5.829924 TGAGCTCCTCTGAACAGAAATTTTT 59.170 36.000 12.15 0.00 36.94 1.94
1523 2399 3.307339 GGTGAGCTCCTCTGAACAGAAAT 60.307 47.826 12.15 0.00 36.94 2.17
1526 2403 1.261480 GGTGAGCTCCTCTGAACAGA 58.739 55.000 12.15 4.45 35.85 3.41
1531 2408 0.678366 GAGACGGTGAGCTCCTCTGA 60.678 60.000 12.15 0.00 0.00 3.27
1554 2431 3.744660 ACACCACCATGAAAAGAGAGAC 58.255 45.455 0.00 0.00 0.00 3.36
1564 2441 1.302752 GCAGCAGACACCACCATGA 60.303 57.895 0.00 0.00 0.00 3.07
1711 2603 5.264395 ACATTATCAGAAACAAGAAGGGGG 58.736 41.667 0.00 0.00 0.00 5.40
1714 2606 6.680810 TGCAACATTATCAGAAACAAGAAGG 58.319 36.000 0.00 0.00 0.00 3.46
1722 2614 7.276218 GCAAAGCTATTGCAACATTATCAGAAA 59.724 33.333 21.23 0.00 44.34 2.52
1725 2617 6.506464 GCAAAGCTATTGCAACATTATCAG 57.494 37.500 21.23 0.00 44.34 2.90
1736 2629 4.685169 TTACTGACAGCAAAGCTATTGC 57.315 40.909 19.56 19.56 45.22 3.56
1745 2638 4.708177 AGAGAAGCTTTTACTGACAGCAA 58.292 39.130 0.00 0.00 35.88 3.91
1760 2671 6.089476 GCAGATTTAGTTGGAAAAGAGAAGC 58.911 40.000 0.00 0.00 0.00 3.86
1775 2686 4.202398 TGGCTAATCCTCCTGCAGATTTAG 60.202 45.833 17.39 14.19 34.60 1.85
1776 2687 3.716353 TGGCTAATCCTCCTGCAGATTTA 59.284 43.478 17.39 4.67 34.60 1.40
1780 2691 0.833287 GTGGCTAATCCTCCTGCAGA 59.167 55.000 17.39 0.00 35.26 4.26
1863 2774 3.636300 AGCAGCAACAACTTGGAATGTAA 59.364 39.130 0.00 0.00 0.00 2.41
1866 2781 2.806608 AGCAGCAACAACTTGGAATG 57.193 45.000 0.00 0.00 0.00 2.67
1904 2819 5.831103 ACACCATGGTTAATCAGATTCCTT 58.169 37.500 16.84 0.00 0.00 3.36
1921 2836 6.567687 TGATTCAAAACACGATAACACCAT 57.432 33.333 0.00 0.00 0.00 3.55
1922 2837 6.378710 TTGATTCAAAACACGATAACACCA 57.621 33.333 0.00 0.00 0.00 4.17
1928 2843 5.572511 GCAGCAATTGATTCAAAACACGATA 59.427 36.000 10.34 0.00 0.00 2.92
1954 2869 1.351017 TCTCGGGGAGCTGAAATTTGT 59.649 47.619 0.00 0.00 0.00 2.83
2113 3032 6.803320 CCAAACATATGTTACTTTGTGAGCAG 59.197 38.462 21.07 0.00 37.25 4.24
2163 3083 2.760092 ACTGCACAGGTTGAACACAAAT 59.240 40.909 2.21 0.00 0.00 2.32
2180 3100 0.321122 CTGGACTCCTTGACCACTGC 60.321 60.000 0.00 0.00 35.68 4.40
2504 3435 4.497300 CCACATAACAAAAATCTGCAGGG 58.503 43.478 15.13 0.00 0.00 4.45
2612 3550 3.935203 AGTAACTCGCAATTCCAGACATG 59.065 43.478 0.00 0.00 0.00 3.21
2615 3553 2.930682 GGAGTAACTCGCAATTCCAGAC 59.069 50.000 0.00 0.00 0.00 3.51
2634 3572 9.725206 AAGGTCTTATATTAGTTTACAGAGGGA 57.275 33.333 0.00 0.00 0.00 4.20
2652 3590 9.547753 GCAGATTATGTGATCTAAAAGGTCTTA 57.452 33.333 0.00 0.00 34.68 2.10
2653 3591 7.225538 CGCAGATTATGTGATCTAAAAGGTCTT 59.774 37.037 0.00 0.00 42.31 3.01
2654 3592 6.703607 CGCAGATTATGTGATCTAAAAGGTCT 59.296 38.462 0.00 0.00 42.31 3.85
2655 3593 6.480320 ACGCAGATTATGTGATCTAAAAGGTC 59.520 38.462 0.00 0.00 42.31 3.85
2656 3594 6.349300 ACGCAGATTATGTGATCTAAAAGGT 58.651 36.000 0.00 0.00 42.31 3.50
2657 3595 6.851222 ACGCAGATTATGTGATCTAAAAGG 57.149 37.500 0.00 0.00 42.31 3.11
2658 3596 8.817100 TGTTACGCAGATTATGTGATCTAAAAG 58.183 33.333 0.00 0.00 42.31 2.27
2659 3597 8.710835 TGTTACGCAGATTATGTGATCTAAAA 57.289 30.769 0.00 0.00 42.31 1.52
2660 3598 8.887036 ATGTTACGCAGATTATGTGATCTAAA 57.113 30.769 0.00 0.00 42.31 1.85
2661 3599 8.764287 CAATGTTACGCAGATTATGTGATCTAA 58.236 33.333 0.00 0.00 42.31 2.10
2662 3600 7.926018 ACAATGTTACGCAGATTATGTGATCTA 59.074 33.333 0.00 0.00 42.31 1.98
2663 3601 6.763135 ACAATGTTACGCAGATTATGTGATCT 59.237 34.615 0.00 0.00 42.31 2.75
2664 3602 6.847792 CACAATGTTACGCAGATTATGTGATC 59.152 38.462 0.00 0.00 42.31 2.92
2668 3606 4.201910 GGCACAATGTTACGCAGATTATGT 60.202 41.667 0.00 0.00 0.00 2.29
2670 3608 3.944650 TGGCACAATGTTACGCAGATTAT 59.055 39.130 0.00 0.00 31.92 1.28
2704 3643 4.680110 ACTAAGCGGTCGAAATGATAATCG 59.320 41.667 0.00 0.00 40.31 3.34
2711 3650 2.066262 ACACACTAAGCGGTCGAAATG 58.934 47.619 0.00 0.00 0.00 2.32
2718 3657 2.210116 CTGAACAACACACTAAGCGGT 58.790 47.619 0.00 0.00 0.00 5.68
2748 3689 1.886542 GGCTTTTAGATATTGGGCCGG 59.113 52.381 0.00 0.00 0.00 6.13
2756 3697 7.256368 GGAGTAGTTAGCAGGGCTTTTAGATAT 60.256 40.741 0.00 0.00 40.44 1.63
2787 3728 9.896263 GTTAAAAACGTCTTATATTTTGGGACA 57.104 29.630 4.13 0.00 0.00 4.02
2788 3729 9.896263 TGTTAAAAACGTCTTATATTTTGGGAC 57.104 29.630 4.13 0.00 0.00 4.46
2789 3730 9.896263 GTGTTAAAAACGTCTTATATTTTGGGA 57.104 29.630 4.13 0.00 0.00 4.37
2790 3731 9.902196 AGTGTTAAAAACGTCTTATATTTTGGG 57.098 29.630 4.13 0.00 0.00 4.12
2798 3739 9.971922 ACTAGTGTAGTGTTAAAAACGTCTTAT 57.028 29.630 0.00 0.00 37.69 1.73
2814 3755 8.732746 AAGAACATTTTTGACACTAGTGTAGT 57.267 30.769 27.98 14.29 45.05 2.73
2823 3764 9.520204 CCCATGATATAAGAACATTTTTGACAC 57.480 33.333 0.00 0.00 0.00 3.67
2824 3765 9.473007 TCCCATGATATAAGAACATTTTTGACA 57.527 29.630 0.00 0.00 0.00 3.58
2825 3766 9.736023 GTCCCATGATATAAGAACATTTTTGAC 57.264 33.333 0.00 0.00 0.00 3.18
2826 3767 8.620416 CGTCCCATGATATAAGAACATTTTTGA 58.380 33.333 0.00 0.00 0.00 2.69
2827 3768 7.862372 CCGTCCCATGATATAAGAACATTTTTG 59.138 37.037 0.00 0.00 0.00 2.44
2828 3769 7.777910 TCCGTCCCATGATATAAGAACATTTTT 59.222 33.333 0.00 0.00 0.00 1.94
2829 3770 7.287061 TCCGTCCCATGATATAAGAACATTTT 58.713 34.615 0.00 0.00 0.00 1.82
2830 3771 6.837312 TCCGTCCCATGATATAAGAACATTT 58.163 36.000 0.00 0.00 0.00 2.32
2831 3772 6.433847 TCCGTCCCATGATATAAGAACATT 57.566 37.500 0.00 0.00 0.00 2.71
2832 3773 5.046304 CCTCCGTCCCATGATATAAGAACAT 60.046 44.000 0.00 0.00 0.00 2.71
2833 3774 4.283467 CCTCCGTCCCATGATATAAGAACA 59.717 45.833 0.00 0.00 0.00 3.18
2834 3775 4.322801 CCCTCCGTCCCATGATATAAGAAC 60.323 50.000 0.00 0.00 0.00 3.01
2835 3776 3.838317 CCCTCCGTCCCATGATATAAGAA 59.162 47.826 0.00 0.00 0.00 2.52
2836 3777 3.076937 TCCCTCCGTCCCATGATATAAGA 59.923 47.826 0.00 0.00 0.00 2.10
2837 3778 3.441101 TCCCTCCGTCCCATGATATAAG 58.559 50.000 0.00 0.00 0.00 1.73
2838 3779 3.181410 ACTCCCTCCGTCCCATGATATAA 60.181 47.826 0.00 0.00 0.00 0.98
2839 3780 2.382305 ACTCCCTCCGTCCCATGATATA 59.618 50.000 0.00 0.00 0.00 0.86
2840 3781 1.150135 ACTCCCTCCGTCCCATGATAT 59.850 52.381 0.00 0.00 0.00 1.63
2841 3782 0.561184 ACTCCCTCCGTCCCATGATA 59.439 55.000 0.00 0.00 0.00 2.15
2842 3783 0.561184 TACTCCCTCCGTCCCATGAT 59.439 55.000 0.00 0.00 0.00 2.45
2843 3784 0.337082 TTACTCCCTCCGTCCCATGA 59.663 55.000 0.00 0.00 0.00 3.07
2844 3785 0.464452 GTTACTCCCTCCGTCCCATG 59.536 60.000 0.00 0.00 0.00 3.66
2845 3786 1.041447 CGTTACTCCCTCCGTCCCAT 61.041 60.000 0.00 0.00 0.00 4.00
2846 3787 1.679977 CGTTACTCCCTCCGTCCCA 60.680 63.158 0.00 0.00 0.00 4.37
2847 3788 0.394352 TACGTTACTCCCTCCGTCCC 60.394 60.000 0.00 0.00 34.95 4.46
2848 3789 0.735471 GTACGTTACTCCCTCCGTCC 59.265 60.000 0.00 0.00 34.95 4.79
2849 3790 1.399791 CTGTACGTTACTCCCTCCGTC 59.600 57.143 0.00 0.00 34.95 4.79
2850 3791 1.271597 ACTGTACGTTACTCCCTCCGT 60.272 52.381 0.00 0.00 37.33 4.69
2851 3792 1.131883 CACTGTACGTTACTCCCTCCG 59.868 57.143 0.00 0.00 0.00 4.63
2852 3793 2.165998 ACACTGTACGTTACTCCCTCC 58.834 52.381 0.00 0.00 0.00 4.30
2853 3794 3.181502 GCTACACTGTACGTTACTCCCTC 60.182 52.174 0.00 0.00 0.00 4.30
2854 3795 2.751806 GCTACACTGTACGTTACTCCCT 59.248 50.000 0.00 0.00 0.00 4.20
2855 3796 2.751806 AGCTACACTGTACGTTACTCCC 59.248 50.000 0.00 0.00 0.00 4.30
2856 3797 3.756069 CAGCTACACTGTACGTTACTCC 58.244 50.000 0.00 0.00 41.86 3.85
2893 3834 4.994852 GCAATTATACTTCACGCTATCCCA 59.005 41.667 0.00 0.00 0.00 4.37
2895 3836 7.884816 TTAGCAATTATACTTCACGCTATCC 57.115 36.000 0.00 0.00 31.16 2.59
2896 3837 9.746711 CAATTAGCAATTATACTTCACGCTATC 57.253 33.333 0.00 0.00 31.16 2.08
2897 3838 9.489084 TCAATTAGCAATTATACTTCACGCTAT 57.511 29.630 0.00 0.00 31.16 2.97
2898 3839 8.880878 TCAATTAGCAATTATACTTCACGCTA 57.119 30.769 0.00 0.00 0.00 4.26
2899 3840 7.786178 TCAATTAGCAATTATACTTCACGCT 57.214 32.000 0.00 0.00 0.00 5.07
2900 3841 8.835467 TTTCAATTAGCAATTATACTTCACGC 57.165 30.769 0.00 0.00 0.00 5.34
2957 3899 4.448210 TCCCAAGTTTTATCTGATACGGC 58.552 43.478 0.00 0.00 0.00 5.68
2976 3918 6.817765 TGTTTATTCAGACTGTTCAATCCC 57.182 37.500 1.59 0.00 0.00 3.85
3057 4003 9.630098 TTTGACTAAACTAAGATACGGTAACTG 57.370 33.333 0.00 0.00 0.00 3.16
3101 4048 5.486526 GTGGCTTCTGATATCCTTCCATAG 58.513 45.833 0.00 0.00 0.00 2.23
3148 4095 2.901249 TGCCTTACGTTATCTTCCAGC 58.099 47.619 0.00 0.00 0.00 4.85
3181 4130 5.447954 CGTATGGACAACAATTGGCGATTTA 60.448 40.000 10.83 0.00 40.53 1.40
3187 4136 3.241701 CAACGTATGGACAACAATTGGC 58.758 45.455 10.83 0.00 38.21 4.52
3208 4157 2.350772 CGGACAGTGAAAAATGCAGTCC 60.351 50.000 0.00 6.03 40.39 3.85
3210 4159 2.290641 GACGGACAGTGAAAAATGCAGT 59.709 45.455 0.00 0.00 0.00 4.40
3217 4166 3.536956 ACAGAAGACGGACAGTGAAAA 57.463 42.857 0.00 0.00 0.00 2.29
3242 4191 8.141909 ACTACCACACATATACACATCACATAC 58.858 37.037 0.00 0.00 0.00 2.39
3244 4193 7.124573 ACTACCACACATATACACATCACAT 57.875 36.000 0.00 0.00 0.00 3.21
3290 4239 4.142687 CGGTAAAGTATGCCTTTTCCACAG 60.143 45.833 12.59 0.00 45.89 3.66
3301 4251 4.448060 GTGATAGAAGGCGGTAAAGTATGC 59.552 45.833 0.00 0.00 0.00 3.14
3320 4270 0.965363 GGTTGGATGTTGCCCGTGAT 60.965 55.000 0.00 0.00 0.00 3.06
3325 4275 1.337118 TTTCTGGTTGGATGTTGCCC 58.663 50.000 0.00 0.00 0.00 5.36
3328 4278 9.108284 AGTTTTTAAATTTCTGGTTGGATGTTG 57.892 29.630 0.00 0.00 0.00 3.33
3331 4281 9.323985 TGAAGTTTTTAAATTTCTGGTTGGATG 57.676 29.630 10.49 0.00 36.12 3.51
3332 4282 9.546428 CTGAAGTTTTTAAATTTCTGGTTGGAT 57.454 29.630 10.49 0.00 36.12 3.41
3348 4298 9.991906 AATGACAATCATGAATCTGAAGTTTTT 57.008 25.926 0.00 0.00 37.15 1.94
3349 4299 9.419297 CAATGACAATCATGAATCTGAAGTTTT 57.581 29.630 0.00 0.00 37.15 2.43
3350 4300 7.544566 GCAATGACAATCATGAATCTGAAGTTT 59.455 33.333 0.00 0.00 37.15 2.66
3351 4301 7.033791 GCAATGACAATCATGAATCTGAAGTT 58.966 34.615 0.00 0.00 37.15 2.66
3352 4302 6.377429 AGCAATGACAATCATGAATCTGAAGT 59.623 34.615 0.00 0.00 37.15 3.01
3354 4304 6.457799 CGAGCAATGACAATCATGAATCTGAA 60.458 38.462 0.00 0.00 37.15 3.02
3355 4305 5.007332 CGAGCAATGACAATCATGAATCTGA 59.993 40.000 0.00 0.00 37.15 3.27
3366 4352 3.758023 TGAATGGTTCGAGCAATGACAAT 59.242 39.130 0.53 0.00 0.00 2.71
3379 4365 5.863935 GCAGTGGTAATCTTTTGAATGGTTC 59.136 40.000 0.00 0.00 0.00 3.62
3382 4368 5.047802 ACAGCAGTGGTAATCTTTTGAATGG 60.048 40.000 0.00 0.00 0.00 3.16
3384 4370 7.394359 ACATACAGCAGTGGTAATCTTTTGAAT 59.606 33.333 0.00 0.00 0.00 2.57
3390 4376 5.420725 TGACATACAGCAGTGGTAATCTT 57.579 39.130 0.00 0.00 0.00 2.40
3391 4377 5.129320 TGATGACATACAGCAGTGGTAATCT 59.871 40.000 11.80 0.00 40.09 2.40
3392 4378 5.235186 GTGATGACATACAGCAGTGGTAATC 59.765 44.000 0.00 6.38 45.69 1.75
3402 4388 5.919707 CAGTATCTCAGTGATGACATACAGC 59.080 44.000 0.00 0.00 36.65 4.40
3411 4397 5.321959 ACACAGACAGTATCTCAGTGATG 57.678 43.478 0.00 0.00 35.72 3.07
3424 4410 3.187227 GGTTCACATAGCAACACAGACAG 59.813 47.826 0.00 0.00 0.00 3.51
3472 4458 2.375766 CCTGTCAAGCGTCGTCAGC 61.376 63.158 0.00 0.00 0.00 4.26
3602 4588 3.884895 ACGATGTGCAGGGAATATCAAA 58.115 40.909 0.00 0.00 0.00 2.69
3608 4594 1.003580 AGACAACGATGTGCAGGGAAT 59.996 47.619 1.86 0.00 40.74 3.01
3617 4603 3.326747 GTTCCTGCTAAGACAACGATGT 58.673 45.455 0.00 0.00 44.25 3.06
3619 4607 2.567615 AGGTTCCTGCTAAGACAACGAT 59.432 45.455 0.00 0.00 0.00 3.73
3625 4613 4.554960 AAGGTAAGGTTCCTGCTAAGAC 57.445 45.455 0.00 0.00 35.27 3.01
3631 4619 3.428413 TTGGTAAGGTAAGGTTCCTGC 57.572 47.619 0.00 0.00 35.27 4.85
3634 4622 5.826208 CCATGTATTGGTAAGGTAAGGTTCC 59.174 44.000 0.00 0.00 40.99 3.62
3649 4638 3.507233 AGCACAACCAAGACCATGTATTG 59.493 43.478 0.00 0.00 34.94 1.90
3653 4642 1.682854 CAAGCACAACCAAGACCATGT 59.317 47.619 0.00 0.00 0.00 3.21
3726 4715 1.671379 GAACGGGCCAGACTTGTCC 60.671 63.158 10.86 0.00 0.00 4.02
3735 4724 3.260888 TGGAATGGGAACGGGCCA 61.261 61.111 4.39 0.00 0.00 5.36
3747 4736 1.530419 TGCGCCAAACAGGTGGAAT 60.530 52.632 4.18 0.00 45.98 3.01
3765 4754 1.376424 CTTCATGCTCCGTGCCAGT 60.376 57.895 0.00 0.00 42.00 4.00
3849 4838 0.250684 AATCGGATGTGTGTGCACCA 60.251 50.000 15.69 9.21 44.65 4.17
3906 4896 1.475403 CTACTCGGTCAGGTGATGGT 58.525 55.000 0.00 0.00 0.00 3.55
3908 4898 0.103208 GGCTACTCGGTCAGGTGATG 59.897 60.000 0.00 0.00 0.00 3.07
3934 4927 0.823356 GAACTTGGCAAGGTGAGGCA 60.823 55.000 29.26 0.00 40.01 4.75
3983 4976 4.175337 GGGCTAGCATCCACGCCA 62.175 66.667 18.24 0.00 44.23 5.69
4007 5000 6.268847 AGCCTATTGTACAACCAAAAATCCAA 59.731 34.615 11.22 0.00 0.00 3.53
4099 5092 9.965824 CAAGTTTTTCCAATCTTTTTAGAGCTA 57.034 29.630 0.00 0.00 0.00 3.32
4235 5230 4.880696 GCAAAGATGATCTGGAGTTAAGCT 59.119 41.667 0.00 0.00 0.00 3.74
4248 5243 6.822667 TTCACATGTTAGTGCAAAGATGAT 57.177 33.333 13.51 0.00 39.35 2.45
4249 5244 6.631971 TTTCACATGTTAGTGCAAAGATGA 57.368 33.333 13.51 0.00 39.35 2.92
4250 5245 8.239314 ACTATTTCACATGTTAGTGCAAAGATG 58.761 33.333 7.06 6.70 39.35 2.90
4276 5271 2.793790 ACAACGACAACACGCGTAAATA 59.206 40.909 13.44 0.00 40.23 1.40
4350 5345 2.879907 CAATGAGCCAACCCTGCG 59.120 61.111 0.00 0.00 0.00 5.18
4589 5585 1.377725 GGCATGACACCACCTCCAG 60.378 63.158 0.00 0.00 0.00 3.86
4604 5600 1.730064 GCGTGAGACTTTTATTCGGCA 59.270 47.619 0.00 0.00 0.00 5.69
4622 5618 2.287009 GGACAAGACCAGAAAAACAGCG 60.287 50.000 0.00 0.00 0.00 5.18
4625 5621 2.993937 ACGGACAAGACCAGAAAAACA 58.006 42.857 0.00 0.00 0.00 2.83
4632 5628 0.249868 TCTGCAACGGACAAGACCAG 60.250 55.000 0.00 0.00 0.00 4.00
4648 5644 2.728846 CGATGACAACCCGCAAAATCTG 60.729 50.000 0.00 0.00 0.00 2.90
4666 5662 3.618690 AAGAAAGCCTAAGCACTCGAT 57.381 42.857 0.00 0.00 43.56 3.59
4670 5666 2.887152 CACCAAAGAAAGCCTAAGCACT 59.113 45.455 0.00 0.00 43.56 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.