Multiple sequence alignment - TraesCS2B01G099400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G099400 chr2B 100.000 2725 0 0 1 2725 58825207 58827931 0.000000e+00 5033.0
1 TraesCS2B01G099400 chr2B 80.962 956 106 44 793 1711 58689234 58690150 0.000000e+00 688.0
2 TraesCS2B01G099400 chr2B 85.666 593 53 14 997 1573 58791520 58792096 1.810000e-166 595.0
3 TraesCS2B01G099400 chr2B 86.017 472 33 14 821 1288 58773242 58773684 2.460000e-130 475.0
4 TraesCS2B01G099400 chr2B 87.113 388 33 10 1510 1886 58834989 58835370 9.020000e-115 424.0
5 TraesCS2B01G099400 chr2B 86.087 345 36 8 1378 1711 58773811 58774154 7.170000e-96 361.0
6 TraesCS2B01G099400 chr2B 88.931 262 27 2 467 726 144435574 144435313 3.380000e-84 322.0
7 TraesCS2B01G099400 chr2B 84.574 188 18 5 805 991 58791290 58791467 2.790000e-40 176.0
8 TraesCS2B01G099400 chr2B 82.759 174 15 9 2505 2677 58838983 58839142 1.020000e-29 141.0
9 TraesCS2B01G099400 chr2A 87.297 1480 101 38 745 2183 38908373 38909806 0.000000e+00 1611.0
10 TraesCS2B01G099400 chr2A 88.785 856 55 17 727 1573 38878692 38879515 0.000000e+00 1011.0
11 TraesCS2B01G099400 chr2A 84.736 891 101 22 793 1678 38811963 38812823 0.000000e+00 859.0
12 TraesCS2B01G099400 chr2A 84.653 821 84 24 925 1733 38754963 38755753 0.000000e+00 780.0
13 TraesCS2B01G099400 chr2A 90.446 314 27 2 2265 2578 38910135 38910445 7.020000e-111 411.0
14 TraesCS2B01G099400 chr2A 86.585 164 5 6 316 462 38878505 38878668 6.040000e-37 165.0
15 TraesCS2B01G099400 chr2D 87.538 1300 80 41 996 2258 35677846 35679100 0.000000e+00 1428.0
16 TraesCS2B01G099400 chr2D 84.067 841 75 28 912 1711 35531748 35532570 0.000000e+00 756.0
17 TraesCS2B01G099400 chr2D 86.552 699 60 19 994 1680 35639069 35639745 0.000000e+00 739.0
18 TraesCS2B01G099400 chr2D 85.314 749 61 26 996 1733 35564373 35565083 0.000000e+00 728.0
19 TraesCS2B01G099400 chr2D 93.080 289 15 2 2265 2553 35679140 35679423 4.200000e-113 418.0
20 TraesCS2B01G099400 chr2D 81.628 430 49 22 1319 1730 42075333 42074916 2.020000e-86 329.0
21 TraesCS2B01G099400 chr2D 89.105 257 24 4 463 717 332510411 332510157 1.570000e-82 316.0
22 TraesCS2B01G099400 chr2D 89.868 227 13 6 1044 1269 42076260 42076043 1.600000e-72 283.0
23 TraesCS2B01G099400 chr2D 85.240 271 23 8 726 990 35638755 35639014 2.080000e-66 263.0
24 TraesCS2B01G099400 chr2D 89.623 212 12 6 761 966 35677525 35677732 7.480000e-66 261.0
25 TraesCS2B01G099400 chr2D 85.638 188 17 7 805 984 35564136 35564321 3.580000e-44 189.0
26 TraesCS2B01G099400 chr2D 95.652 115 5 0 1049 1163 605102527 605102413 4.630000e-43 185.0
27 TraesCS2B01G099400 chr2D 84.146 164 8 7 316 462 35677348 35677510 2.830000e-30 143.0
28 TraesCS2B01G099400 chr2D 97.143 35 1 0 1000 1034 605102559 605102525 2.930000e-05 60.2
29 TraesCS2B01G099400 chr4B 96.519 316 10 1 1 315 359593516 359593201 3.110000e-144 521.0
30 TraesCS2B01G099400 chr4B 96.519 316 9 2 1 315 649291543 649291229 3.110000e-144 521.0
31 TraesCS2B01G099400 chr4B 95.016 321 15 1 1 320 101843929 101844249 1.130000e-138 503.0
32 TraesCS2B01G099400 chr4B 95.268 317 11 3 1 315 36616706 36616392 1.460000e-137 499.0
33 TraesCS2B01G099400 chr4B 94.620 316 15 2 1 315 664636495 664636809 3.150000e-134 488.0
34 TraesCS2B01G099400 chr4B 89.062 256 26 2 463 717 4525798 4526052 1.570000e-82 316.0
35 TraesCS2B01G099400 chrUn 95.570 316 13 1 1 315 40768728 40769043 3.130000e-139 505.0
36 TraesCS2B01G099400 chr6B 95.570 316 13 1 1 315 703993142 703992827 3.130000e-139 505.0
37 TraesCS2B01G099400 chr6B 94.304 316 17 1 1 315 149953558 149953243 1.470000e-132 483.0
38 TraesCS2B01G099400 chr5B 95.253 316 14 1 1 315 14603254 14603569 1.460000e-137 499.0
39 TraesCS2B01G099400 chr5B 75.817 306 53 10 1001 1288 357998787 357999089 4.730000e-28 135.0
40 TraesCS2B01G099400 chr5B 75.163 306 55 10 1001 1288 358375818 358376120 1.020000e-24 124.0
41 TraesCS2B01G099400 chr3B 91.057 246 20 2 463 707 730681820 730682064 5.620000e-87 331.0
42 TraesCS2B01G099400 chr7D 90.361 249 22 2 463 709 573989786 573990034 2.620000e-85 326.0
43 TraesCS2B01G099400 chr6D 90.079 252 24 1 459 709 420002410 420002661 2.620000e-85 326.0
44 TraesCS2B01G099400 chr1D 88.931 262 27 2 457 717 481472508 481472768 3.380000e-84 322.0
45 TraesCS2B01G099400 chr1D 88.672 256 27 2 463 717 349468685 349468431 7.330000e-81 311.0
46 TraesCS2B01G099400 chr5A 88.258 264 29 2 455 717 509981842 509981580 5.660000e-82 315.0
47 TraesCS2B01G099400 chr5A 82.635 334 33 16 2348 2678 666922359 666922048 3.460000e-69 272.0
48 TraesCS2B01G099400 chr5A 75.817 306 53 10 1001 1288 405013885 405014187 4.730000e-28 135.0
49 TraesCS2B01G099400 chr1B 88.235 119 13 1 1397 1515 26507704 26507821 1.020000e-29 141.0
50 TraesCS2B01G099400 chr5D 75.817 306 53 10 1001 1288 312057901 312058203 4.730000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G099400 chr2B 58825207 58827931 2724 False 5033.0 5033 100.00000 1 2725 1 chr2B.!!$F2 2724
1 TraesCS2B01G099400 chr2B 58689234 58690150 916 False 688.0 688 80.96200 793 1711 1 chr2B.!!$F1 918
2 TraesCS2B01G099400 chr2B 58773242 58774154 912 False 418.0 475 86.05200 821 1711 2 chr2B.!!$F3 890
3 TraesCS2B01G099400 chr2B 58791290 58792096 806 False 385.5 595 85.12000 805 1573 2 chr2B.!!$F4 768
4 TraesCS2B01G099400 chr2B 58834989 58839142 4153 False 282.5 424 84.93600 1510 2677 2 chr2B.!!$F5 1167
5 TraesCS2B01G099400 chr2A 38908373 38910445 2072 False 1011.0 1611 88.87150 745 2578 2 chr2A.!!$F4 1833
6 TraesCS2B01G099400 chr2A 38811963 38812823 860 False 859.0 859 84.73600 793 1678 1 chr2A.!!$F2 885
7 TraesCS2B01G099400 chr2A 38754963 38755753 790 False 780.0 780 84.65300 925 1733 1 chr2A.!!$F1 808
8 TraesCS2B01G099400 chr2A 38878505 38879515 1010 False 588.0 1011 87.68500 316 1573 2 chr2A.!!$F3 1257
9 TraesCS2B01G099400 chr2D 35531748 35532570 822 False 756.0 756 84.06700 912 1711 1 chr2D.!!$F1 799
10 TraesCS2B01G099400 chr2D 35677348 35679423 2075 False 562.5 1428 88.59675 316 2553 4 chr2D.!!$F4 2237
11 TraesCS2B01G099400 chr2D 35638755 35639745 990 False 501.0 739 85.89600 726 1680 2 chr2D.!!$F3 954
12 TraesCS2B01G099400 chr2D 35564136 35565083 947 False 458.5 728 85.47600 805 1733 2 chr2D.!!$F2 928
13 TraesCS2B01G099400 chr2D 42074916 42076260 1344 True 306.0 329 85.74800 1044 1730 2 chr2D.!!$R2 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.030101 AAAACGCGCTGCTGCTAAAA 59.970 45.0 5.73 0.0 36.97 1.52 F
1323 2210 0.034960 TTCCGAATCCGCCATTGGAA 60.035 50.0 6.95 0.0 42.46 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1329 2216 0.517316 CCGAACAAGAAGCGAAAGGG 59.483 55.0 0.0 0.0 0.00 3.95 R
2613 6824 0.250945 TGGTGGGCATAAGCGTTGAA 60.251 50.0 0.0 0.0 43.41 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.766068 GCAGATCATGAGAGGGAATCA 57.234 47.619 0.09 0.00 0.00 2.57
21 22 3.666274 GCAGATCATGAGAGGGAATCAG 58.334 50.000 0.09 0.00 0.00 2.90
22 23 3.557475 GCAGATCATGAGAGGGAATCAGG 60.557 52.174 0.09 0.00 0.00 3.86
23 24 2.638855 AGATCATGAGAGGGAATCAGGC 59.361 50.000 0.09 0.00 0.00 4.85
24 25 1.135094 TCATGAGAGGGAATCAGGCC 58.865 55.000 0.00 0.00 0.00 5.19
25 26 0.250209 CATGAGAGGGAATCAGGCCG 60.250 60.000 0.00 0.00 0.00 6.13
26 27 2.049627 ATGAGAGGGAATCAGGCCGC 62.050 60.000 0.00 0.00 0.00 6.53
27 28 3.798954 GAGAGGGAATCAGGCCGCG 62.799 68.421 0.00 0.00 0.00 6.46
28 29 4.162690 GAGGGAATCAGGCCGCGT 62.163 66.667 4.92 0.00 0.00 6.01
29 30 4.473520 AGGGAATCAGGCCGCGTG 62.474 66.667 4.92 6.73 0.00 5.34
51 52 4.995624 GGGGGTAGGTGAAAATAGCTAT 57.004 45.455 0.00 0.00 33.70 2.97
53 54 6.443995 GGGGGTAGGTGAAAATAGCTATAA 57.556 41.667 6.68 0.00 33.70 0.98
54 55 6.236409 GGGGGTAGGTGAAAATAGCTATAAC 58.764 44.000 6.68 3.72 33.70 1.89
55 56 6.183361 GGGGGTAGGTGAAAATAGCTATAACA 60.183 42.308 6.68 5.12 33.70 2.41
56 57 6.935208 GGGGTAGGTGAAAATAGCTATAACAG 59.065 42.308 6.68 0.00 33.70 3.16
57 58 7.419865 GGGGTAGGTGAAAATAGCTATAACAGT 60.420 40.741 6.68 1.83 33.70 3.55
58 59 8.645110 GGGTAGGTGAAAATAGCTATAACAGTA 58.355 37.037 6.68 1.01 33.70 2.74
59 60 9.694137 GGTAGGTGAAAATAGCTATAACAGTAG 57.306 37.037 6.68 0.00 33.70 2.57
60 61 9.194271 GTAGGTGAAAATAGCTATAACAGTAGC 57.806 37.037 6.68 2.26 45.83 3.58
66 67 2.150397 GCTATAACAGTAGCGTGGGG 57.850 55.000 0.00 0.00 37.88 4.96
67 68 1.411612 GCTATAACAGTAGCGTGGGGT 59.588 52.381 0.00 0.00 37.88 4.95
68 69 2.545322 GCTATAACAGTAGCGTGGGGTC 60.545 54.545 0.00 0.00 37.88 4.46
69 70 1.861982 ATAACAGTAGCGTGGGGTCT 58.138 50.000 0.00 0.00 0.00 3.85
70 71 1.180029 TAACAGTAGCGTGGGGTCTC 58.820 55.000 0.00 0.00 0.00 3.36
71 72 0.830444 AACAGTAGCGTGGGGTCTCA 60.830 55.000 0.00 0.00 0.00 3.27
72 73 0.830444 ACAGTAGCGTGGGGTCTCAA 60.830 55.000 0.00 0.00 0.00 3.02
73 74 0.320374 CAGTAGCGTGGGGTCTCAAA 59.680 55.000 0.00 0.00 0.00 2.69
74 75 1.053424 AGTAGCGTGGGGTCTCAAAA 58.947 50.000 0.00 0.00 0.00 2.44
75 76 1.154197 GTAGCGTGGGGTCTCAAAAC 58.846 55.000 0.00 0.00 0.00 2.43
76 77 0.320073 TAGCGTGGGGTCTCAAAACG 60.320 55.000 0.00 0.00 37.32 3.60
77 78 2.943653 CGTGGGGTCTCAAAACGC 59.056 61.111 0.00 0.00 0.00 4.84
78 79 2.943653 GTGGGGTCTCAAAACGCG 59.056 61.111 3.53 3.53 33.19 6.01
79 80 2.975799 TGGGGTCTCAAAACGCGC 60.976 61.111 5.73 0.00 33.19 6.86
80 81 2.668550 GGGGTCTCAAAACGCGCT 60.669 61.111 5.73 0.00 33.19 5.92
81 82 2.556287 GGGTCTCAAAACGCGCTG 59.444 61.111 5.73 0.64 0.00 5.18
82 83 2.127232 GGTCTCAAAACGCGCTGC 60.127 61.111 5.73 0.00 0.00 5.25
83 84 2.607892 GGTCTCAAAACGCGCTGCT 61.608 57.895 5.73 0.00 0.00 4.24
84 85 1.439365 GTCTCAAAACGCGCTGCTG 60.439 57.895 5.73 0.00 0.00 4.41
85 86 2.798262 CTCAAAACGCGCTGCTGC 60.798 61.111 5.73 5.34 0.00 5.25
86 87 3.245948 CTCAAAACGCGCTGCTGCT 62.246 57.895 5.73 0.00 36.97 4.24
87 88 1.900585 CTCAAAACGCGCTGCTGCTA 61.901 55.000 5.73 0.00 36.97 3.49
88 89 1.082169 CAAAACGCGCTGCTGCTAA 60.082 52.632 5.73 0.00 36.97 3.09
89 90 0.660005 CAAAACGCGCTGCTGCTAAA 60.660 50.000 5.73 0.00 36.97 1.85
90 91 0.030101 AAAACGCGCTGCTGCTAAAA 59.970 45.000 5.73 0.00 36.97 1.52
91 92 0.240945 AAACGCGCTGCTGCTAAAAT 59.759 45.000 5.73 0.00 36.97 1.82
92 93 0.179189 AACGCGCTGCTGCTAAAATC 60.179 50.000 5.73 0.00 36.97 2.17
93 94 1.297893 CGCGCTGCTGCTAAAATCC 60.298 57.895 14.03 0.00 36.97 3.01
94 95 1.297893 GCGCTGCTGCTAAAATCCG 60.298 57.895 14.03 0.00 36.97 4.18
95 96 1.982073 GCGCTGCTGCTAAAATCCGT 61.982 55.000 14.03 0.00 36.97 4.69
96 97 1.286501 CGCTGCTGCTAAAATCCGTA 58.713 50.000 14.03 0.00 36.97 4.02
97 98 1.258982 CGCTGCTGCTAAAATCCGTAG 59.741 52.381 14.03 0.00 36.97 3.51
98 99 2.280628 GCTGCTGCTAAAATCCGTAGT 58.719 47.619 8.53 0.00 36.03 2.73
99 100 3.454375 GCTGCTGCTAAAATCCGTAGTA 58.546 45.455 8.53 0.00 36.03 1.82
100 101 3.491267 GCTGCTGCTAAAATCCGTAGTAG 59.509 47.826 8.53 0.00 35.20 2.57
101 102 4.683832 CTGCTGCTAAAATCCGTAGTAGT 58.316 43.478 0.00 0.00 34.74 2.73
102 103 5.735354 GCTGCTGCTAAAATCCGTAGTAGTA 60.735 44.000 8.53 0.00 34.74 1.82
103 104 5.828747 TGCTGCTAAAATCCGTAGTAGTAG 58.171 41.667 0.00 0.00 34.74 2.57
104 105 4.680567 GCTGCTAAAATCCGTAGTAGTAGC 59.319 45.833 4.31 4.31 42.40 3.58
105 106 4.852138 TGCTAAAATCCGTAGTAGTAGCG 58.148 43.478 0.00 0.00 36.19 4.26
106 107 3.667726 GCTAAAATCCGTAGTAGTAGCGC 59.332 47.826 0.00 0.00 0.00 5.92
107 108 4.556302 GCTAAAATCCGTAGTAGTAGCGCT 60.556 45.833 17.26 17.26 0.00 5.92
108 109 3.351020 AAATCCGTAGTAGTAGCGCTG 57.649 47.619 22.90 0.00 0.00 5.18
109 110 1.964552 ATCCGTAGTAGTAGCGCTGT 58.035 50.000 22.90 10.02 0.00 4.40
110 111 1.742761 TCCGTAGTAGTAGCGCTGTT 58.257 50.000 22.90 10.65 0.00 3.16
111 112 2.086869 TCCGTAGTAGTAGCGCTGTTT 58.913 47.619 22.90 7.82 0.00 2.83
112 113 2.096496 TCCGTAGTAGTAGCGCTGTTTC 59.904 50.000 22.90 8.27 0.00 2.78
113 114 2.097142 CCGTAGTAGTAGCGCTGTTTCT 59.903 50.000 22.90 15.24 0.00 2.52
114 115 3.310774 CCGTAGTAGTAGCGCTGTTTCTA 59.689 47.826 22.90 14.23 0.00 2.10
115 116 4.270102 CGTAGTAGTAGCGCTGTTTCTAC 58.730 47.826 22.90 23.16 36.35 2.59
116 117 4.201753 CGTAGTAGTAGCGCTGTTTCTACA 60.202 45.833 27.81 18.55 38.05 2.74
117 118 4.778534 AGTAGTAGCGCTGTTTCTACAA 57.221 40.909 27.81 6.64 38.05 2.41
118 119 5.130292 AGTAGTAGCGCTGTTTCTACAAA 57.870 39.130 27.81 10.06 38.05 2.83
119 120 5.162075 AGTAGTAGCGCTGTTTCTACAAAG 58.838 41.667 27.81 0.00 38.05 2.77
120 121 3.326747 AGTAGCGCTGTTTCTACAAAGG 58.673 45.455 22.90 0.00 38.05 3.11
121 122 0.875059 AGCGCTGTTTCTACAAAGGC 59.125 50.000 10.39 0.00 32.92 4.35
122 123 0.452784 GCGCTGTTTCTACAAAGGCG 60.453 55.000 0.00 0.00 42.77 5.52
123 124 0.452784 CGCTGTTTCTACAAAGGCGC 60.453 55.000 0.00 0.00 37.78 6.53
124 125 0.875059 GCTGTTTCTACAAAGGCGCT 59.125 50.000 7.64 0.00 32.92 5.92
125 126 2.073816 GCTGTTTCTACAAAGGCGCTA 58.926 47.619 7.64 0.00 32.92 4.26
126 127 2.159693 GCTGTTTCTACAAAGGCGCTAC 60.160 50.000 7.64 0.00 32.92 3.58
127 128 3.326747 CTGTTTCTACAAAGGCGCTACT 58.673 45.455 7.64 0.00 32.92 2.57
128 129 4.491676 CTGTTTCTACAAAGGCGCTACTA 58.508 43.478 7.64 0.00 32.92 1.82
129 130 4.240096 TGTTTCTACAAAGGCGCTACTAC 58.760 43.478 7.64 0.00 0.00 2.73
130 131 4.021719 TGTTTCTACAAAGGCGCTACTACT 60.022 41.667 7.64 0.00 0.00 2.57
131 132 5.183713 TGTTTCTACAAAGGCGCTACTACTA 59.816 40.000 7.64 0.00 0.00 1.82
132 133 6.127535 TGTTTCTACAAAGGCGCTACTACTAT 60.128 38.462 7.64 0.00 0.00 2.12
133 134 7.067372 TGTTTCTACAAAGGCGCTACTACTATA 59.933 37.037 7.64 0.00 0.00 1.31
134 135 6.551385 TCTACAAAGGCGCTACTACTATAC 57.449 41.667 7.64 0.00 0.00 1.47
135 136 4.581077 ACAAAGGCGCTACTACTATACC 57.419 45.455 7.64 0.00 0.00 2.73
136 137 4.213513 ACAAAGGCGCTACTACTATACCT 58.786 43.478 7.64 0.00 0.00 3.08
137 138 5.380043 ACAAAGGCGCTACTACTATACCTA 58.620 41.667 7.64 0.00 0.00 3.08
138 139 5.472820 ACAAAGGCGCTACTACTATACCTAG 59.527 44.000 7.64 0.00 0.00 3.02
139 140 3.608796 AGGCGCTACTACTATACCTAGC 58.391 50.000 7.64 0.00 0.00 3.42
140 141 3.008813 AGGCGCTACTACTATACCTAGCA 59.991 47.826 7.64 0.00 32.65 3.49
141 142 3.126686 GGCGCTACTACTATACCTAGCAC 59.873 52.174 7.64 0.00 32.65 4.40
142 143 3.181522 GCGCTACTACTATACCTAGCACG 60.182 52.174 0.00 0.00 32.65 5.34
143 144 3.993081 CGCTACTACTATACCTAGCACGT 59.007 47.826 0.00 0.00 32.65 4.49
144 145 4.091220 CGCTACTACTATACCTAGCACGTC 59.909 50.000 0.00 0.00 32.65 4.34
145 146 4.091220 GCTACTACTATACCTAGCACGTCG 59.909 50.000 0.00 0.00 33.24 5.12
146 147 3.397482 ACTACTATACCTAGCACGTCGG 58.603 50.000 0.00 0.00 0.00 4.79
147 148 1.602311 ACTATACCTAGCACGTCGGG 58.398 55.000 0.00 0.00 0.00 5.14
148 149 1.141657 ACTATACCTAGCACGTCGGGA 59.858 52.381 0.00 0.00 0.00 5.14
149 150 2.224606 CTATACCTAGCACGTCGGGAA 58.775 52.381 0.00 0.00 0.00 3.97
150 151 0.743097 ATACCTAGCACGTCGGGAAC 59.257 55.000 0.00 0.00 0.00 3.62
162 163 3.771978 GGGAACGGTGTGGCAATT 58.228 55.556 0.00 0.00 0.00 2.32
163 164 2.949826 GGGAACGGTGTGGCAATTA 58.050 52.632 0.00 0.00 0.00 1.40
164 165 1.470051 GGGAACGGTGTGGCAATTAT 58.530 50.000 0.00 0.00 0.00 1.28
165 166 2.645802 GGGAACGGTGTGGCAATTATA 58.354 47.619 0.00 0.00 0.00 0.98
166 167 2.616842 GGGAACGGTGTGGCAATTATAG 59.383 50.000 0.00 0.00 0.00 1.31
167 168 3.275999 GGAACGGTGTGGCAATTATAGT 58.724 45.455 0.00 0.00 0.00 2.12
168 169 4.444536 GGAACGGTGTGGCAATTATAGTA 58.555 43.478 0.00 0.00 0.00 1.82
169 170 4.510340 GGAACGGTGTGGCAATTATAGTAG 59.490 45.833 0.00 0.00 0.00 2.57
170 171 4.748277 ACGGTGTGGCAATTATAGTAGT 57.252 40.909 0.00 0.00 0.00 2.73
171 172 5.857471 ACGGTGTGGCAATTATAGTAGTA 57.143 39.130 0.00 0.00 0.00 1.82
172 173 5.839621 ACGGTGTGGCAATTATAGTAGTAG 58.160 41.667 0.00 0.00 0.00 2.57
173 174 4.684703 CGGTGTGGCAATTATAGTAGTAGC 59.315 45.833 0.00 0.00 0.00 3.58
174 175 4.684703 GGTGTGGCAATTATAGTAGTAGCG 59.315 45.833 0.00 0.00 0.00 4.26
175 176 4.150098 GTGTGGCAATTATAGTAGTAGCGC 59.850 45.833 0.00 0.00 0.00 5.92
176 177 3.364023 GTGGCAATTATAGTAGTAGCGCG 59.636 47.826 0.00 0.00 0.00 6.86
177 178 3.005050 TGGCAATTATAGTAGTAGCGCGT 59.995 43.478 8.43 0.00 0.00 6.01
178 179 3.985925 GGCAATTATAGTAGTAGCGCGTT 59.014 43.478 8.43 3.54 0.00 4.84
179 180 4.089636 GGCAATTATAGTAGTAGCGCGTTC 59.910 45.833 8.43 0.00 0.00 3.95
180 181 4.916249 GCAATTATAGTAGTAGCGCGTTCT 59.084 41.667 8.43 6.52 0.00 3.01
181 182 5.164177 GCAATTATAGTAGTAGCGCGTTCTG 60.164 44.000 8.43 0.00 0.00 3.02
182 183 2.402640 ATAGTAGTAGCGCGTTCTGC 57.597 50.000 8.43 7.59 41.47 4.26
183 184 0.379669 TAGTAGTAGCGCGTTCTGCC 59.620 55.000 8.43 0.00 42.08 4.85
184 185 1.877165 GTAGTAGCGCGTTCTGCCC 60.877 63.158 8.43 0.00 42.08 5.36
185 186 3.072486 TAGTAGCGCGTTCTGCCCC 62.072 63.158 8.43 0.00 42.08 5.80
186 187 4.452733 GTAGCGCGTTCTGCCCCT 62.453 66.667 8.43 0.00 42.08 4.79
187 188 4.451150 TAGCGCGTTCTGCCCCTG 62.451 66.667 8.43 0.00 42.08 4.45
201 202 4.207281 CCTGCCGCGCTACTGCTA 62.207 66.667 5.56 0.00 36.97 3.49
202 203 2.202743 CTGCCGCGCTACTGCTAA 60.203 61.111 5.56 0.00 36.97 3.09
203 204 2.202743 TGCCGCGCTACTGCTAAG 60.203 61.111 5.56 0.00 36.97 2.18
204 205 3.631127 GCCGCGCTACTGCTAAGC 61.631 66.667 5.56 0.00 36.97 3.09
214 215 4.608951 GCTACTGCTAAGCGTGTAATAGT 58.391 43.478 0.00 0.00 36.03 2.12
215 216 5.755813 GCTACTGCTAAGCGTGTAATAGTA 58.244 41.667 0.00 0.00 36.03 1.82
216 217 5.852229 GCTACTGCTAAGCGTGTAATAGTAG 59.148 44.000 0.00 0.00 39.36 2.57
217 218 4.608951 ACTGCTAAGCGTGTAATAGTAGC 58.391 43.478 0.00 0.00 34.08 3.58
218 219 3.624900 TGCTAAGCGTGTAATAGTAGCG 58.375 45.455 0.00 0.00 37.39 4.26
221 222 2.130711 GCGTGTAATAGTAGCGCCG 58.869 57.895 2.29 0.00 41.93 6.46
222 223 0.593263 GCGTGTAATAGTAGCGCCGT 60.593 55.000 2.29 0.00 41.93 5.68
223 224 1.831343 CGTGTAATAGTAGCGCCGTT 58.169 50.000 2.29 0.00 0.00 4.44
224 225 2.187707 CGTGTAATAGTAGCGCCGTTT 58.812 47.619 2.29 0.00 0.00 3.60
225 226 2.599973 CGTGTAATAGTAGCGCCGTTTT 59.400 45.455 2.29 0.00 0.00 2.43
226 227 3.790820 CGTGTAATAGTAGCGCCGTTTTA 59.209 43.478 2.29 0.00 0.00 1.52
227 228 4.316653 CGTGTAATAGTAGCGCCGTTTTAC 60.317 45.833 2.29 7.31 0.00 2.01
228 229 4.026558 GTGTAATAGTAGCGCCGTTTTACC 60.027 45.833 2.29 0.00 0.00 2.85
229 230 2.965572 ATAGTAGCGCCGTTTTACCA 57.034 45.000 2.29 0.00 0.00 3.25
230 231 2.282701 TAGTAGCGCCGTTTTACCAG 57.717 50.000 2.29 0.00 0.00 4.00
231 232 0.604578 AGTAGCGCCGTTTTACCAGA 59.395 50.000 2.29 0.00 0.00 3.86
232 233 0.717784 GTAGCGCCGTTTTACCAGAC 59.282 55.000 2.29 0.00 0.00 3.51
233 234 0.733566 TAGCGCCGTTTTACCAGACG 60.734 55.000 2.29 0.00 38.90 4.18
234 235 2.472934 CGCCGTTTTACCAGACGC 59.527 61.111 0.00 0.00 37.91 5.19
235 236 2.472934 GCCGTTTTACCAGACGCG 59.527 61.111 3.53 3.53 37.91 6.01
236 237 2.472934 CCGTTTTACCAGACGCGC 59.527 61.111 5.73 0.00 37.91 6.86
237 238 2.025418 CCGTTTTACCAGACGCGCT 61.025 57.895 5.73 0.50 37.91 5.92
238 239 0.733566 CCGTTTTACCAGACGCGCTA 60.734 55.000 5.73 0.00 37.91 4.26
239 240 0.364515 CGTTTTACCAGACGCGCTAC 59.635 55.000 5.73 0.00 32.11 3.58
240 241 1.706443 GTTTTACCAGACGCGCTACT 58.294 50.000 5.73 0.00 0.00 2.57
241 242 1.389106 GTTTTACCAGACGCGCTACTG 59.611 52.381 19.01 19.01 0.00 2.74
242 243 0.734942 TTTACCAGACGCGCTACTGC 60.735 55.000 20.05 0.42 33.40 4.40
243 244 1.592400 TTACCAGACGCGCTACTGCT 61.592 55.000 20.05 12.36 36.97 4.24
244 245 0.745486 TACCAGACGCGCTACTGCTA 60.745 55.000 20.05 11.55 36.97 3.49
245 246 1.138883 CCAGACGCGCTACTGCTAA 59.861 57.895 20.05 0.00 36.97 3.09
246 247 0.867753 CCAGACGCGCTACTGCTAAG 60.868 60.000 20.05 7.43 36.97 2.18
247 248 0.179161 CAGACGCGCTACTGCTAAGT 60.179 55.000 5.73 0.00 40.67 2.24
248 249 1.063616 CAGACGCGCTACTGCTAAGTA 59.936 52.381 5.73 0.00 37.88 2.24
269 270 3.052940 GCAGTAGCGCCTCATTTTAAC 57.947 47.619 2.29 0.00 0.00 2.01
270 271 2.418628 GCAGTAGCGCCTCATTTTAACA 59.581 45.455 2.29 0.00 0.00 2.41
271 272 3.119990 GCAGTAGCGCCTCATTTTAACAA 60.120 43.478 2.29 0.00 0.00 2.83
272 273 4.614993 GCAGTAGCGCCTCATTTTAACAAA 60.615 41.667 2.29 0.00 0.00 2.83
273 274 4.851558 CAGTAGCGCCTCATTTTAACAAAC 59.148 41.667 2.29 0.00 0.00 2.93
274 275 2.928694 AGCGCCTCATTTTAACAAACG 58.071 42.857 2.29 0.00 0.00 3.60
275 276 2.292292 AGCGCCTCATTTTAACAAACGT 59.708 40.909 2.29 0.00 0.00 3.99
276 277 3.047093 GCGCCTCATTTTAACAAACGTT 58.953 40.909 0.00 0.00 0.00 3.99
277 278 4.023878 AGCGCCTCATTTTAACAAACGTTA 60.024 37.500 2.29 0.00 0.00 3.18
278 279 4.087507 GCGCCTCATTTTAACAAACGTTAC 59.912 41.667 0.00 0.00 0.00 2.50
279 280 5.445845 CGCCTCATTTTAACAAACGTTACT 58.554 37.500 0.00 0.00 0.00 2.24
280 281 5.338559 CGCCTCATTTTAACAAACGTTACTG 59.661 40.000 0.00 0.00 0.00 2.74
281 282 5.627780 GCCTCATTTTAACAAACGTTACTGG 59.372 40.000 0.00 0.00 0.00 4.00
282 283 6.731164 CCTCATTTTAACAAACGTTACTGGT 58.269 36.000 0.00 0.00 0.00 4.00
283 284 7.520292 GCCTCATTTTAACAAACGTTACTGGTA 60.520 37.037 0.00 0.00 0.00 3.25
284 285 8.344098 CCTCATTTTAACAAACGTTACTGGTAA 58.656 33.333 0.00 3.57 0.00 2.85
285 286 9.719279 CTCATTTTAACAAACGTTACTGGTAAA 57.281 29.630 15.78 15.78 33.87 2.01
291 292 9.719279 TTAACAAACGTTACTGGTAAAATTCTG 57.281 29.630 7.79 0.00 0.00 3.02
292 293 7.324354 ACAAACGTTACTGGTAAAATTCTGT 57.676 32.000 0.00 0.00 0.00 3.41
293 294 7.190871 ACAAACGTTACTGGTAAAATTCTGTG 58.809 34.615 0.00 0.00 0.00 3.66
294 295 6.930667 AACGTTACTGGTAAAATTCTGTGT 57.069 33.333 0.00 0.00 0.00 3.72
295 296 8.336806 CAAACGTTACTGGTAAAATTCTGTGTA 58.663 33.333 0.00 0.00 0.00 2.90
296 297 8.611654 AACGTTACTGGTAAAATTCTGTGTAT 57.388 30.769 0.00 0.00 0.00 2.29
297 298 9.709495 AACGTTACTGGTAAAATTCTGTGTATA 57.291 29.630 0.00 0.00 0.00 1.47
298 299 9.709495 ACGTTACTGGTAAAATTCTGTGTATAA 57.291 29.630 0.00 0.00 0.00 0.98
303 304 9.582648 ACTGGTAAAATTCTGTGTATAAGGTTT 57.417 29.630 0.00 0.00 0.00 3.27
306 307 9.850628 GGTAAAATTCTGTGTATAAGGTTTTCC 57.149 33.333 0.00 0.00 41.05 3.13
307 308 9.850628 GTAAAATTCTGTGTATAAGGTTTTCCC 57.149 33.333 0.00 0.00 41.86 3.97
309 310 9.816787 AAAATTCTGTGTATAAGGTTTTCCCTA 57.183 29.630 0.00 0.00 45.47 3.53
310 311 9.816787 AAATTCTGTGTATAAGGTTTTCCCTAA 57.183 29.630 0.00 0.00 45.47 2.69
311 312 9.990868 AATTCTGTGTATAAGGTTTTCCCTAAT 57.009 29.630 0.00 0.00 45.47 1.73
314 315 9.275572 TCTGTGTATAAGGTTTTCCCTAATAGT 57.724 33.333 0.00 0.00 45.47 2.12
358 359 6.488683 TGGACCCAGTACTTATCAAACAAAAG 59.511 38.462 0.00 0.00 0.00 2.27
362 363 5.390613 CAGTACTTATCAAACAAAAGCCCG 58.609 41.667 0.00 0.00 0.00 6.13
377 378 3.384532 CCGCAAGCTGCCCCAAAT 61.385 61.111 0.00 0.00 41.12 2.32
378 379 2.051518 CCGCAAGCTGCCCCAAATA 61.052 57.895 0.00 0.00 41.12 1.40
462 480 4.889832 ATGGCGCAAGAAGAGATTAAAG 57.110 40.909 10.83 0.00 43.02 1.85
464 482 2.223363 GGCGCAAGAAGAGATTAAAGCC 60.223 50.000 10.83 0.00 43.02 4.35
465 483 2.223363 GCGCAAGAAGAGATTAAAGCCC 60.223 50.000 0.30 0.00 43.02 5.19
466 484 3.274288 CGCAAGAAGAGATTAAAGCCCT 58.726 45.455 0.00 0.00 43.02 5.19
467 485 3.064545 CGCAAGAAGAGATTAAAGCCCTG 59.935 47.826 0.00 0.00 43.02 4.45
468 486 4.013050 GCAAGAAGAGATTAAAGCCCTGT 58.987 43.478 0.00 0.00 0.00 4.00
470 488 5.047731 GCAAGAAGAGATTAAAGCCCTGTTT 60.048 40.000 0.00 0.00 0.00 2.83
471 489 6.151144 GCAAGAAGAGATTAAAGCCCTGTTTA 59.849 38.462 0.00 0.00 0.00 2.01
472 490 7.627300 GCAAGAAGAGATTAAAGCCCTGTTTAG 60.627 40.741 0.00 0.00 0.00 1.85
475 493 7.608376 AGAAGAGATTAAAGCCCTGTTTAGTTC 59.392 37.037 0.00 0.00 0.00 3.01
476 494 6.779860 AGAGATTAAAGCCCTGTTTAGTTCA 58.220 36.000 0.00 0.00 0.00 3.18
477 495 7.406104 AGAGATTAAAGCCCTGTTTAGTTCAT 58.594 34.615 0.00 0.00 0.00 2.57
478 496 8.548877 AGAGATTAAAGCCCTGTTTAGTTCATA 58.451 33.333 0.00 0.00 0.00 2.15
479 497 9.174166 GAGATTAAAGCCCTGTTTAGTTCATAA 57.826 33.333 0.00 0.00 0.00 1.90
480 498 9.178758 AGATTAAAGCCCTGTTTAGTTCATAAG 57.821 33.333 0.00 0.00 0.00 1.73
481 499 8.879427 ATTAAAGCCCTGTTTAGTTCATAAGT 57.121 30.769 0.00 0.00 0.00 2.24
482 500 6.819397 AAAGCCCTGTTTAGTTCATAAGTC 57.181 37.500 0.00 0.00 0.00 3.01
483 501 4.844884 AGCCCTGTTTAGTTCATAAGTCC 58.155 43.478 0.00 0.00 0.00 3.85
484 502 4.536489 AGCCCTGTTTAGTTCATAAGTCCT 59.464 41.667 0.00 0.00 0.00 3.85
485 503 5.724854 AGCCCTGTTTAGTTCATAAGTCCTA 59.275 40.000 0.00 0.00 0.00 2.94
486 504 6.214819 AGCCCTGTTTAGTTCATAAGTCCTAA 59.785 38.462 0.00 0.00 0.00 2.69
487 505 6.539103 GCCCTGTTTAGTTCATAAGTCCTAAG 59.461 42.308 0.00 0.00 0.00 2.18
488 506 7.580882 GCCCTGTTTAGTTCATAAGTCCTAAGA 60.581 40.741 0.00 0.00 0.00 2.10
489 507 7.764901 CCCTGTTTAGTTCATAAGTCCTAAGAC 59.235 40.741 0.00 0.00 43.89 3.01
538 556 9.388506 GTTATAAGTTCCTAAAAAGTCCCTACC 57.611 37.037 0.00 0.00 0.00 3.18
539 557 7.825983 ATAAGTTCCTAAAAAGTCCCTACCT 57.174 36.000 0.00 0.00 0.00 3.08
540 558 5.500546 AGTTCCTAAAAAGTCCCTACCTG 57.499 43.478 0.00 0.00 0.00 4.00
541 559 4.912133 AGTTCCTAAAAAGTCCCTACCTGT 59.088 41.667 0.00 0.00 0.00 4.00
542 560 5.371769 AGTTCCTAAAAAGTCCCTACCTGTT 59.628 40.000 0.00 0.00 0.00 3.16
543 561 5.917545 TCCTAAAAAGTCCCTACCTGTTT 57.082 39.130 0.00 0.00 0.00 2.83
544 562 5.627135 TCCTAAAAAGTCCCTACCTGTTTG 58.373 41.667 0.00 0.00 0.00 2.93
545 563 4.765339 CCTAAAAAGTCCCTACCTGTTTGG 59.235 45.833 0.00 0.00 42.93 3.28
556 574 2.938956 CCTGTTTGGTTCCTGAGACT 57.061 50.000 0.00 0.00 0.00 3.24
557 575 3.214696 CCTGTTTGGTTCCTGAGACTT 57.785 47.619 0.00 0.00 0.00 3.01
558 576 4.351874 CCTGTTTGGTTCCTGAGACTTA 57.648 45.455 0.00 0.00 0.00 2.24
559 577 4.714632 CCTGTTTGGTTCCTGAGACTTAA 58.285 43.478 0.00 0.00 0.00 1.85
560 578 5.316987 CCTGTTTGGTTCCTGAGACTTAAT 58.683 41.667 0.00 0.00 0.00 1.40
561 579 6.472887 CCTGTTTGGTTCCTGAGACTTAATA 58.527 40.000 0.00 0.00 0.00 0.98
562 580 7.112779 CCTGTTTGGTTCCTGAGACTTAATAT 58.887 38.462 0.00 0.00 0.00 1.28
563 581 7.066284 CCTGTTTGGTTCCTGAGACTTAATATG 59.934 40.741 0.00 0.00 0.00 1.78
564 582 6.884295 TGTTTGGTTCCTGAGACTTAATATGG 59.116 38.462 0.00 0.00 0.00 2.74
565 583 6.884472 TTGGTTCCTGAGACTTAATATGGA 57.116 37.500 0.00 0.00 0.00 3.41
566 584 6.235231 TGGTTCCTGAGACTTAATATGGAC 57.765 41.667 0.00 0.00 0.00 4.02
567 585 5.964477 TGGTTCCTGAGACTTAATATGGACT 59.036 40.000 0.00 0.00 0.00 3.85
568 586 7.130099 TGGTTCCTGAGACTTAATATGGACTA 58.870 38.462 0.00 0.00 0.00 2.59
569 587 7.622081 TGGTTCCTGAGACTTAATATGGACTAA 59.378 37.037 0.00 0.00 0.00 2.24
570 588 8.483758 GGTTCCTGAGACTTAATATGGACTAAA 58.516 37.037 0.00 0.00 0.00 1.85
571 589 9.886132 GTTCCTGAGACTTAATATGGACTAAAA 57.114 33.333 0.00 0.00 0.00 1.52
573 591 9.488762 TCCTGAGACTTAATATGGACTAAAAGA 57.511 33.333 0.00 0.00 0.00 2.52
574 592 9.535878 CCTGAGACTTAATATGGACTAAAAGAC 57.464 37.037 0.00 0.00 0.00 3.01
575 593 9.535878 CTGAGACTTAATATGGACTAAAAGACC 57.464 37.037 0.00 0.00 0.00 3.85
576 594 9.042450 TGAGACTTAATATGGACTAAAAGACCA 57.958 33.333 0.74 0.74 43.65 4.02
639 657 9.952188 GAGTCTTATTTTATAAGTCCAAATGCC 57.048 33.333 6.39 0.00 0.00 4.40
640 658 9.700831 AGTCTTATTTTATAAGTCCAAATGCCT 57.299 29.630 6.39 0.00 0.00 4.75
651 669 6.775594 AGTCCAAATGCCTAATTTAAGTCC 57.224 37.500 0.00 0.00 36.28 3.85
652 670 6.494059 AGTCCAAATGCCTAATTTAAGTCCT 58.506 36.000 0.00 0.00 36.28 3.85
653 671 6.954102 AGTCCAAATGCCTAATTTAAGTCCTT 59.046 34.615 0.00 0.00 36.28 3.36
654 672 8.113462 AGTCCAAATGCCTAATTTAAGTCCTTA 58.887 33.333 0.00 0.00 36.28 2.69
655 673 8.914011 GTCCAAATGCCTAATTTAAGTCCTTAT 58.086 33.333 0.00 0.00 36.28 1.73
672 690 7.616313 AGTCCTTATAAGTCTCTTCTGTTTGG 58.384 38.462 11.50 0.00 0.00 3.28
673 691 7.235812 AGTCCTTATAAGTCTCTTCTGTTTGGT 59.764 37.037 11.50 0.00 0.00 3.67
674 692 7.878644 GTCCTTATAAGTCTCTTCTGTTTGGTT 59.121 37.037 11.50 0.00 0.00 3.67
675 693 8.437575 TCCTTATAAGTCTCTTCTGTTTGGTTT 58.562 33.333 11.50 0.00 0.00 3.27
676 694 9.720769 CCTTATAAGTCTCTTCTGTTTGGTTTA 57.279 33.333 11.50 0.00 0.00 2.01
680 698 7.736447 AAGTCTCTTCTGTTTGGTTTAGATG 57.264 36.000 0.00 0.00 0.00 2.90
681 699 6.234177 AGTCTCTTCTGTTTGGTTTAGATGG 58.766 40.000 0.00 0.00 0.00 3.51
682 700 6.043243 AGTCTCTTCTGTTTGGTTTAGATGGA 59.957 38.462 0.00 0.00 0.00 3.41
683 701 6.710744 GTCTCTTCTGTTTGGTTTAGATGGAA 59.289 38.462 0.00 0.00 0.00 3.53
684 702 6.710744 TCTCTTCTGTTTGGTTTAGATGGAAC 59.289 38.462 0.00 0.00 0.00 3.62
715 733 8.541899 AAAACTCTTTTAAATCCCTGTAACCA 57.458 30.769 0.00 0.00 0.00 3.67
716 734 8.541899 AAACTCTTTTAAATCCCTGTAACCAA 57.458 30.769 0.00 0.00 0.00 3.67
717 735 8.541899 AACTCTTTTAAATCCCTGTAACCAAA 57.458 30.769 0.00 0.00 0.00 3.28
718 736 7.948357 ACTCTTTTAAATCCCTGTAACCAAAC 58.052 34.615 0.00 0.00 0.00 2.93
719 737 7.562088 ACTCTTTTAAATCCCTGTAACCAAACA 59.438 33.333 0.00 0.00 0.00 2.83
720 738 7.718525 TCTTTTAAATCCCTGTAACCAAACAC 58.281 34.615 0.00 0.00 0.00 3.32
721 739 6.408107 TTTAAATCCCTGTAACCAAACACC 57.592 37.500 0.00 0.00 0.00 4.16
722 740 2.597578 ATCCCTGTAACCAAACACCC 57.402 50.000 0.00 0.00 0.00 4.61
723 741 1.525175 TCCCTGTAACCAAACACCCT 58.475 50.000 0.00 0.00 0.00 4.34
724 742 1.422402 TCCCTGTAACCAAACACCCTC 59.578 52.381 0.00 0.00 0.00 4.30
742 761 6.726764 ACACCCTCTAAATCTACTCTGTTCTT 59.273 38.462 0.00 0.00 0.00 2.52
966 1022 5.009911 CGTCCTTCTCATCTCATCAGAATCT 59.990 44.000 0.00 0.00 30.24 2.40
1161 1360 2.887568 CATCACGTCTCTGGCGGC 60.888 66.667 0.00 0.00 0.00 6.53
1162 1361 4.498520 ATCACGTCTCTGGCGGCG 62.499 66.667 0.51 0.51 0.00 6.46
1199 1398 4.856607 CGTCGCCGGAGAAGGAGC 62.857 72.222 10.32 0.00 0.00 4.70
1302 2128 4.767255 GGTCCGCCAGTGCCTGAG 62.767 72.222 4.00 0.00 32.44 3.35
1307 2133 1.817099 CGCCAGTGCCTGAGATTCC 60.817 63.158 4.00 0.00 32.44 3.01
1323 2210 0.034960 TTCCGAATCCGCCATTGGAA 60.035 50.000 6.95 0.00 42.46 3.53
1345 2234 2.224769 TGGATCCCTTTCGCTTCTTGTT 60.225 45.455 9.90 0.00 0.00 2.83
1362 2251 1.203087 TGTTCGGTCCCCTCTCTTACA 60.203 52.381 0.00 0.00 0.00 2.41
1389 2322 6.017605 GCAGAGATTAACCAATCGATCAATGT 60.018 38.462 0.00 0.00 44.51 2.71
1390 2323 7.350467 CAGAGATTAACCAATCGATCAATGTG 58.650 38.462 0.00 0.00 44.51 3.21
1395 2333 1.398041 CCAATCGATCAATGTGTGCGT 59.602 47.619 0.00 0.00 0.00 5.24
1666 2631 2.900838 GGCGCTGCAGAGCATCAT 60.901 61.111 37.49 0.00 46.62 2.45
1682 2653 0.919300 TCATAGAGTCGTCGTCGTCG 59.081 55.000 5.50 5.50 38.33 5.12
1683 2654 0.644331 CATAGAGTCGTCGTCGTCGT 59.356 55.000 11.41 0.00 38.33 4.34
1684 2655 0.919981 ATAGAGTCGTCGTCGTCGTC 59.080 55.000 11.41 6.41 38.33 4.20
1751 2732 3.933239 AATGGTAGGAGGAGCTAGGAT 57.067 47.619 0.00 0.00 0.00 3.24
1812 2799 0.238553 GAGAGTTGCCCTTTCGTTGC 59.761 55.000 0.00 0.00 0.00 4.17
1862 2850 5.452302 GCGTGAAAATCTGAAAATACATCCG 59.548 40.000 0.00 0.00 0.00 4.18
1964 2958 2.072298 CTGGCTAGTTGCTGTTGAGAC 58.928 52.381 0.00 0.00 42.39 3.36
1965 2959 1.071605 GGCTAGTTGCTGTTGAGACG 58.928 55.000 0.00 0.00 42.39 4.18
1966 2960 1.336887 GGCTAGTTGCTGTTGAGACGA 60.337 52.381 0.00 0.00 42.39 4.20
1967 2961 1.989165 GCTAGTTGCTGTTGAGACGAG 59.011 52.381 0.00 0.00 38.95 4.18
1968 2962 2.351835 GCTAGTTGCTGTTGAGACGAGA 60.352 50.000 0.00 0.00 38.95 4.04
1982 4519 4.641541 TGAGACGAGATCCAACGGTTTATA 59.358 41.667 8.84 0.00 0.00 0.98
2036 4577 4.201679 CACGCGAGGCCGGATGTA 62.202 66.667 15.93 0.00 36.06 2.29
2055 4596 5.878332 TGTATGCTCATTGTGTTACCTTG 57.122 39.130 0.00 0.00 0.00 3.61
2068 4609 4.267928 GTGTTACCTTGCTGCTAGATTACG 59.732 45.833 12.66 0.00 0.00 3.18
2071 4612 2.761208 ACCTTGCTGCTAGATTACGAGT 59.239 45.455 12.66 0.00 0.00 4.18
2073 4614 3.799420 CCTTGCTGCTAGATTACGAGTTC 59.201 47.826 12.66 0.00 0.00 3.01
2084 4625 7.328737 GCTAGATTACGAGTTCTCAGTTTCAAA 59.671 37.037 0.00 0.00 0.00 2.69
2085 4626 9.193133 CTAGATTACGAGTTCTCAGTTTCAAAA 57.807 33.333 0.00 0.00 0.00 2.44
2089 4630 6.436843 ACGAGTTCTCAGTTTCAAAAATGT 57.563 33.333 3.23 0.00 35.64 2.71
2091 4632 7.407337 ACGAGTTCTCAGTTTCAAAAATGTAC 58.593 34.615 3.23 0.00 35.64 2.90
2104 4645 5.929415 TCAAAAATGTACGTGTGCTCATAGA 59.071 36.000 0.00 0.00 0.00 1.98
2106 4647 6.985188 AAAATGTACGTGTGCTCATAGATT 57.015 33.333 0.00 0.00 0.00 2.40
2108 4649 7.700322 AAATGTACGTGTGCTCATAGATTAG 57.300 36.000 0.00 0.00 0.00 1.73
2110 4651 6.930667 TGTACGTGTGCTCATAGATTAGTA 57.069 37.500 0.00 0.00 0.00 1.82
2111 4652 6.722301 TGTACGTGTGCTCATAGATTAGTAC 58.278 40.000 0.00 0.00 33.50 2.73
2157 4698 1.076024 ACATTGATGCAGGACCAGGTT 59.924 47.619 0.00 0.00 0.00 3.50
2161 4702 0.179000 GATGCAGGACCAGGTTCGAT 59.821 55.000 0.00 0.00 0.00 3.59
2195 4925 4.320870 CGGTACACCAACCTAAGTTTCAT 58.679 43.478 0.00 0.00 37.39 2.57
2212 4942 7.264373 AGTTTCATTTTTCAGTTCAGACGAT 57.736 32.000 0.00 0.00 0.00 3.73
2434 6622 3.722082 GCCGCTAGCGATTTGATTATTCG 60.722 47.826 37.39 16.78 42.83 3.34
2450 6638 7.319646 TGATTATTCGTTCCATTTCTTTTGGG 58.680 34.615 0.00 0.00 34.85 4.12
2484 6672 0.037326 TGCTTTGACTACCTGCTCCG 60.037 55.000 0.00 0.00 0.00 4.63
2570 6781 5.342806 TGACAGAGACGCTACAAAATTTG 57.657 39.130 3.89 3.89 0.00 2.32
2578 6789 5.920273 AGACGCTACAAAATTTGAAACATGG 59.080 36.000 13.19 0.00 0.00 3.66
2579 6790 4.447389 ACGCTACAAAATTTGAAACATGGC 59.553 37.500 13.19 2.39 0.00 4.40
2580 6791 4.432762 CGCTACAAAATTTGAAACATGGCG 60.433 41.667 13.19 10.66 0.00 5.69
2581 6792 3.876242 ACAAAATTTGAAACATGGCGC 57.124 38.095 13.19 0.00 0.00 6.53
2582 6793 2.547634 ACAAAATTTGAAACATGGCGCC 59.452 40.909 22.73 22.73 0.00 6.53
2583 6794 1.427435 AAATTTGAAACATGGCGCCG 58.573 45.000 23.90 11.34 0.00 6.46
2584 6795 0.316841 AATTTGAAACATGGCGCCGT 59.683 45.000 23.90 20.88 0.00 5.68
2585 6796 0.316841 ATTTGAAACATGGCGCCGTT 59.683 45.000 21.21 16.62 0.00 4.44
2586 6797 0.103208 TTTGAAACATGGCGCCGTTT 59.897 45.000 26.19 26.19 38.02 3.60
2587 6798 4.146640 GAAACATGGCGCCGTTTC 57.853 55.556 30.96 30.96 42.86 2.78
2588 6799 1.284408 GAAACATGGCGCCGTTTCA 59.716 52.632 35.40 18.12 46.57 2.69
2593 6804 1.378514 ATGGCGCCGTTTCATCCTT 60.379 52.632 23.90 0.00 0.00 3.36
2594 6805 1.376609 ATGGCGCCGTTTCATCCTTC 61.377 55.000 23.90 0.00 0.00 3.46
2600 6811 2.731968 CGCCGTTTCATCCTTCATTTGG 60.732 50.000 0.00 0.00 0.00 3.28
2606 6817 5.247862 GTTTCATCCTTCATTTGGGCAAAT 58.752 37.500 0.00 0.00 41.33 2.32
2624 6835 5.390779 GGCAAATGCAAAATTCAACGCTTAT 60.391 36.000 7.80 0.00 44.36 1.73
2637 6848 1.476488 ACGCTTATGCCCACCAAATTC 59.524 47.619 0.00 0.00 35.36 2.17
2643 6854 0.469705 TGCCCACCAAATTCTGCTGT 60.470 50.000 0.00 0.00 0.00 4.40
2651 6862 4.074970 ACCAAATTCTGCTGTCTAACCAG 58.925 43.478 0.00 0.00 35.49 4.00
2659 6870 5.539048 TCTGCTGTCTAACCAGTAAAACTC 58.461 41.667 0.00 0.00 34.84 3.01
2663 6874 6.166982 GCTGTCTAACCAGTAAAACTCTCAT 58.833 40.000 0.00 0.00 34.84 2.90
2669 6880 4.327680 ACCAGTAAAACTCTCATGCCTTC 58.672 43.478 0.00 0.00 0.00 3.46
2677 6888 2.909006 ACTCTCATGCCTTCCTCTTTCA 59.091 45.455 0.00 0.00 0.00 2.69
2678 6889 3.522750 ACTCTCATGCCTTCCTCTTTCAT 59.477 43.478 0.00 0.00 0.00 2.57
2679 6890 4.128643 CTCTCATGCCTTCCTCTTTCATC 58.871 47.826 0.00 0.00 0.00 2.92
2680 6891 3.118112 TCTCATGCCTTCCTCTTTCATCC 60.118 47.826 0.00 0.00 0.00 3.51
2681 6892 2.577563 TCATGCCTTCCTCTTTCATCCA 59.422 45.455 0.00 0.00 0.00 3.41
2682 6893 3.203710 TCATGCCTTCCTCTTTCATCCAT 59.796 43.478 0.00 0.00 0.00 3.41
2683 6894 3.008835 TGCCTTCCTCTTTCATCCATG 57.991 47.619 0.00 0.00 0.00 3.66
2684 6895 2.309755 TGCCTTCCTCTTTCATCCATGT 59.690 45.455 0.00 0.00 0.00 3.21
2685 6896 3.523157 TGCCTTCCTCTTTCATCCATGTA 59.477 43.478 0.00 0.00 0.00 2.29
2686 6897 3.879892 GCCTTCCTCTTTCATCCATGTAC 59.120 47.826 0.00 0.00 0.00 2.90
2687 6898 4.122776 CCTTCCTCTTTCATCCATGTACG 58.877 47.826 0.00 0.00 0.00 3.67
2688 6899 4.383118 CCTTCCTCTTTCATCCATGTACGT 60.383 45.833 0.00 0.00 0.00 3.57
2689 6900 4.123497 TCCTCTTTCATCCATGTACGTG 57.877 45.455 8.18 8.18 0.00 4.49
2690 6901 3.767131 TCCTCTTTCATCCATGTACGTGA 59.233 43.478 16.87 3.37 0.00 4.35
2691 6902 3.865745 CCTCTTTCATCCATGTACGTGAC 59.134 47.826 16.87 0.00 0.00 3.67
2692 6903 4.494484 CTCTTTCATCCATGTACGTGACA 58.506 43.478 16.87 2.99 43.97 3.58
2693 6904 4.888917 TCTTTCATCCATGTACGTGACAA 58.111 39.130 16.87 2.21 42.78 3.18
2694 6905 5.301555 TCTTTCATCCATGTACGTGACAAA 58.698 37.500 16.87 8.17 42.78 2.83
2695 6906 5.760743 TCTTTCATCCATGTACGTGACAAAA 59.239 36.000 16.87 9.77 42.78 2.44
2696 6907 6.261158 TCTTTCATCCATGTACGTGACAAAAA 59.739 34.615 16.87 10.08 42.78 1.94
2697 6908 5.605564 TCATCCATGTACGTGACAAAAAG 57.394 39.130 16.87 0.00 42.78 2.27
2698 6909 5.301555 TCATCCATGTACGTGACAAAAAGA 58.698 37.500 16.87 3.70 42.78 2.52
2699 6910 5.760743 TCATCCATGTACGTGACAAAAAGAA 59.239 36.000 16.87 0.00 42.78 2.52
2700 6911 6.261158 TCATCCATGTACGTGACAAAAAGAAA 59.739 34.615 16.87 0.00 42.78 2.52
2701 6912 6.438259 TCCATGTACGTGACAAAAAGAAAA 57.562 33.333 16.87 0.00 42.78 2.29
2702 6913 6.853720 TCCATGTACGTGACAAAAAGAAAAA 58.146 32.000 16.87 0.00 42.78 1.94
2724 6935 8.907222 AAAAAGTGCACATTCCTATTTGAATT 57.093 26.923 21.04 0.00 32.71 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.557475 CCTGATTCCCTCTCATGATCTGC 60.557 52.174 0.00 0.00 0.00 4.26
1 2 3.557475 GCCTGATTCCCTCTCATGATCTG 60.557 52.174 0.00 0.00 0.00 2.90
2 3 2.638855 GCCTGATTCCCTCTCATGATCT 59.361 50.000 0.00 0.00 0.00 2.75
3 4 2.290197 GGCCTGATTCCCTCTCATGATC 60.290 54.545 0.00 0.00 0.00 2.92
4 5 1.704070 GGCCTGATTCCCTCTCATGAT 59.296 52.381 0.00 0.00 0.00 2.45
5 6 1.135094 GGCCTGATTCCCTCTCATGA 58.865 55.000 0.00 0.00 0.00 3.07
6 7 0.250209 CGGCCTGATTCCCTCTCATG 60.250 60.000 0.00 0.00 0.00 3.07
7 8 2.049627 GCGGCCTGATTCCCTCTCAT 62.050 60.000 0.00 0.00 0.00 2.90
8 9 2.735772 GCGGCCTGATTCCCTCTCA 61.736 63.158 0.00 0.00 0.00 3.27
9 10 2.110006 GCGGCCTGATTCCCTCTC 59.890 66.667 0.00 0.00 0.00 3.20
10 11 3.854669 CGCGGCCTGATTCCCTCT 61.855 66.667 0.00 0.00 0.00 3.69
11 12 4.162690 ACGCGGCCTGATTCCCTC 62.163 66.667 12.47 0.00 0.00 4.30
12 13 4.473520 CACGCGGCCTGATTCCCT 62.474 66.667 12.47 0.00 0.00 4.20
30 31 4.995624 ATAGCTATTTTCACCTACCCCC 57.004 45.455 0.00 0.00 0.00 5.40
31 32 6.834107 TGTTATAGCTATTTTCACCTACCCC 58.166 40.000 12.39 0.00 0.00 4.95
32 33 7.506971 ACTGTTATAGCTATTTTCACCTACCC 58.493 38.462 12.39 0.00 0.00 3.69
33 34 9.694137 CTACTGTTATAGCTATTTTCACCTACC 57.306 37.037 12.39 0.00 0.00 3.18
34 35 9.194271 GCTACTGTTATAGCTATTTTCACCTAC 57.806 37.037 12.39 0.00 43.62 3.18
35 36 8.080417 CGCTACTGTTATAGCTATTTTCACCTA 58.920 37.037 12.39 0.00 44.60 3.08
36 37 6.924060 CGCTACTGTTATAGCTATTTTCACCT 59.076 38.462 12.39 0.00 44.60 4.00
37 38 6.700520 ACGCTACTGTTATAGCTATTTTCACC 59.299 38.462 12.39 0.00 44.60 4.02
38 39 7.306632 CCACGCTACTGTTATAGCTATTTTCAC 60.307 40.741 12.39 5.00 44.60 3.18
39 40 6.700081 CCACGCTACTGTTATAGCTATTTTCA 59.300 38.462 12.39 8.06 44.60 2.69
40 41 6.145696 CCCACGCTACTGTTATAGCTATTTTC 59.854 42.308 12.39 3.80 44.60 2.29
41 42 5.989777 CCCACGCTACTGTTATAGCTATTTT 59.010 40.000 12.39 0.00 44.60 1.82
42 43 5.510861 CCCCACGCTACTGTTATAGCTATTT 60.511 44.000 12.39 0.00 44.60 1.40
43 44 4.021368 CCCCACGCTACTGTTATAGCTATT 60.021 45.833 12.39 0.00 44.60 1.73
44 45 3.510360 CCCCACGCTACTGTTATAGCTAT 59.490 47.826 11.77 11.77 44.60 2.97
45 46 2.889045 CCCCACGCTACTGTTATAGCTA 59.111 50.000 0.00 0.00 44.60 3.32
46 47 1.687123 CCCCACGCTACTGTTATAGCT 59.313 52.381 0.00 0.00 44.60 3.32
47 48 1.411612 ACCCCACGCTACTGTTATAGC 59.588 52.381 0.00 0.00 43.55 2.97
48 49 2.957006 AGACCCCACGCTACTGTTATAG 59.043 50.000 0.00 0.00 0.00 1.31
49 50 2.954318 GAGACCCCACGCTACTGTTATA 59.046 50.000 0.00 0.00 0.00 0.98
50 51 1.755380 GAGACCCCACGCTACTGTTAT 59.245 52.381 0.00 0.00 0.00 1.89
51 52 1.180029 GAGACCCCACGCTACTGTTA 58.820 55.000 0.00 0.00 0.00 2.41
52 53 0.830444 TGAGACCCCACGCTACTGTT 60.830 55.000 0.00 0.00 0.00 3.16
53 54 0.830444 TTGAGACCCCACGCTACTGT 60.830 55.000 0.00 0.00 0.00 3.55
54 55 0.320374 TTTGAGACCCCACGCTACTG 59.680 55.000 0.00 0.00 0.00 2.74
55 56 1.053424 TTTTGAGACCCCACGCTACT 58.947 50.000 0.00 0.00 0.00 2.57
56 57 1.154197 GTTTTGAGACCCCACGCTAC 58.846 55.000 0.00 0.00 0.00 3.58
57 58 0.320073 CGTTTTGAGACCCCACGCTA 60.320 55.000 0.00 0.00 0.00 4.26
58 59 1.597027 CGTTTTGAGACCCCACGCT 60.597 57.895 0.00 0.00 0.00 5.07
59 60 2.943653 CGTTTTGAGACCCCACGC 59.056 61.111 0.00 0.00 0.00 5.34
60 61 2.943653 GCGTTTTGAGACCCCACG 59.056 61.111 0.00 0.00 0.00 4.94
61 62 2.943653 CGCGTTTTGAGACCCCAC 59.056 61.111 0.00 0.00 0.00 4.61
62 63 2.975799 GCGCGTTTTGAGACCCCA 60.976 61.111 8.43 0.00 0.00 4.96
63 64 2.668550 AGCGCGTTTTGAGACCCC 60.669 61.111 8.43 0.00 0.00 4.95
64 65 2.556287 CAGCGCGTTTTGAGACCC 59.444 61.111 8.43 0.00 0.00 4.46
65 66 2.127232 GCAGCGCGTTTTGAGACC 60.127 61.111 8.43 0.00 0.00 3.85
66 67 1.439365 CAGCAGCGCGTTTTGAGAC 60.439 57.895 8.43 0.00 0.00 3.36
67 68 2.938253 CAGCAGCGCGTTTTGAGA 59.062 55.556 8.43 0.00 0.00 3.27
68 69 2.798262 GCAGCAGCGCGTTTTGAG 60.798 61.111 8.43 2.37 0.00 3.02
78 79 2.280628 ACTACGGATTTTAGCAGCAGC 58.719 47.619 0.00 0.00 42.56 5.25
79 80 4.683832 ACTACTACGGATTTTAGCAGCAG 58.316 43.478 0.00 0.00 0.00 4.24
80 81 4.730949 ACTACTACGGATTTTAGCAGCA 57.269 40.909 0.00 0.00 0.00 4.41
81 82 4.680567 GCTACTACTACGGATTTTAGCAGC 59.319 45.833 0.00 0.00 32.47 5.25
82 83 4.910456 CGCTACTACTACGGATTTTAGCAG 59.090 45.833 0.00 0.00 31.82 4.24
83 84 4.790766 GCGCTACTACTACGGATTTTAGCA 60.791 45.833 0.00 0.00 31.82 3.49
84 85 3.667726 GCGCTACTACTACGGATTTTAGC 59.332 47.826 0.00 0.00 0.00 3.09
85 86 4.910456 CAGCGCTACTACTACGGATTTTAG 59.090 45.833 10.99 0.00 0.00 1.85
86 87 4.336433 ACAGCGCTACTACTACGGATTTTA 59.664 41.667 10.99 0.00 0.00 1.52
87 88 3.129988 ACAGCGCTACTACTACGGATTTT 59.870 43.478 10.99 0.00 0.00 1.82
88 89 2.686915 ACAGCGCTACTACTACGGATTT 59.313 45.455 10.99 0.00 0.00 2.17
89 90 2.295885 ACAGCGCTACTACTACGGATT 58.704 47.619 10.99 0.00 0.00 3.01
90 91 1.964552 ACAGCGCTACTACTACGGAT 58.035 50.000 10.99 0.00 0.00 4.18
91 92 1.742761 AACAGCGCTACTACTACGGA 58.257 50.000 10.99 0.00 0.00 4.69
92 93 2.097142 AGAAACAGCGCTACTACTACGG 59.903 50.000 10.99 0.00 0.00 4.02
93 94 3.402058 AGAAACAGCGCTACTACTACG 57.598 47.619 10.99 0.00 0.00 3.51
94 95 5.227238 TGTAGAAACAGCGCTACTACTAC 57.773 43.478 26.92 25.51 38.21 2.73
95 96 5.885230 TTGTAGAAACAGCGCTACTACTA 57.115 39.130 26.92 21.81 38.21 1.82
96 97 4.778534 TTGTAGAAACAGCGCTACTACT 57.221 40.909 26.92 19.92 38.21 2.57
97 98 4.326548 CCTTTGTAGAAACAGCGCTACTAC 59.673 45.833 23.54 23.54 38.21 2.73
98 99 4.491676 CCTTTGTAGAAACAGCGCTACTA 58.508 43.478 10.99 9.07 38.21 1.82
99 100 3.326747 CCTTTGTAGAAACAGCGCTACT 58.673 45.455 10.99 10.13 38.21 2.57
100 101 2.159693 GCCTTTGTAGAAACAGCGCTAC 60.160 50.000 10.99 3.72 36.83 3.58
101 102 2.073816 GCCTTTGTAGAAACAGCGCTA 58.926 47.619 10.99 0.00 36.83 4.26
102 103 0.875059 GCCTTTGTAGAAACAGCGCT 59.125 50.000 2.64 2.64 36.83 5.92
103 104 0.452784 CGCCTTTGTAGAAACAGCGC 60.453 55.000 0.00 0.00 39.77 5.92
104 105 0.452784 GCGCCTTTGTAGAAACAGCG 60.453 55.000 16.38 16.38 45.43 5.18
105 106 0.875059 AGCGCCTTTGTAGAAACAGC 59.125 50.000 2.29 0.00 36.83 4.40
106 107 3.326747 AGTAGCGCCTTTGTAGAAACAG 58.673 45.455 2.29 0.00 36.83 3.16
107 108 3.396260 AGTAGCGCCTTTGTAGAAACA 57.604 42.857 2.29 0.00 0.00 2.83
108 109 4.492611 AGTAGTAGCGCCTTTGTAGAAAC 58.507 43.478 2.29 0.00 0.00 2.78
109 110 4.796038 AGTAGTAGCGCCTTTGTAGAAA 57.204 40.909 2.29 0.00 0.00 2.52
110 111 6.016777 GGTATAGTAGTAGCGCCTTTGTAGAA 60.017 42.308 2.29 0.00 0.00 2.10
111 112 5.471456 GGTATAGTAGTAGCGCCTTTGTAGA 59.529 44.000 2.29 0.00 0.00 2.59
112 113 5.472820 AGGTATAGTAGTAGCGCCTTTGTAG 59.527 44.000 2.29 0.00 0.00 2.74
113 114 5.380043 AGGTATAGTAGTAGCGCCTTTGTA 58.620 41.667 2.29 0.00 0.00 2.41
114 115 4.213513 AGGTATAGTAGTAGCGCCTTTGT 58.786 43.478 2.29 0.00 0.00 2.83
115 116 4.850347 AGGTATAGTAGTAGCGCCTTTG 57.150 45.455 2.29 0.00 0.00 2.77
116 117 4.458642 GCTAGGTATAGTAGTAGCGCCTTT 59.541 45.833 2.29 0.00 0.00 3.11
117 118 4.009002 GCTAGGTATAGTAGTAGCGCCTT 58.991 47.826 2.29 0.00 0.00 4.35
118 119 3.008813 TGCTAGGTATAGTAGTAGCGCCT 59.991 47.826 2.29 0.00 40.71 5.52
119 120 3.126686 GTGCTAGGTATAGTAGTAGCGCC 59.873 52.174 2.29 0.00 41.23 6.53
120 121 3.181522 CGTGCTAGGTATAGTAGTAGCGC 60.182 52.174 0.00 0.00 42.83 5.92
121 122 3.993081 ACGTGCTAGGTATAGTAGTAGCG 59.007 47.826 0.00 0.00 40.71 4.26
122 123 4.091220 CGACGTGCTAGGTATAGTAGTAGC 59.909 50.000 0.00 0.00 38.71 3.58
123 124 4.624882 CCGACGTGCTAGGTATAGTAGTAG 59.375 50.000 0.00 0.00 0.00 2.57
124 125 4.560128 CCGACGTGCTAGGTATAGTAGTA 58.440 47.826 0.00 0.00 0.00 1.82
125 126 3.397482 CCGACGTGCTAGGTATAGTAGT 58.603 50.000 0.00 0.00 0.00 2.73
126 127 2.740981 CCCGACGTGCTAGGTATAGTAG 59.259 54.545 0.00 0.00 0.00 2.57
127 128 2.368548 TCCCGACGTGCTAGGTATAGTA 59.631 50.000 0.00 0.00 0.00 1.82
128 129 1.141657 TCCCGACGTGCTAGGTATAGT 59.858 52.381 0.00 0.00 0.00 2.12
129 130 1.888215 TCCCGACGTGCTAGGTATAG 58.112 55.000 0.00 0.00 0.00 1.31
130 131 1.949525 GTTCCCGACGTGCTAGGTATA 59.050 52.381 0.00 0.00 0.00 1.47
131 132 0.743097 GTTCCCGACGTGCTAGGTAT 59.257 55.000 0.00 0.00 0.00 2.73
132 133 1.647545 CGTTCCCGACGTGCTAGGTA 61.648 60.000 0.00 0.00 46.49 3.08
133 134 2.968206 GTTCCCGACGTGCTAGGT 59.032 61.111 0.00 0.00 0.00 3.08
134 135 2.202570 CGTTCCCGACGTGCTAGG 60.203 66.667 0.00 0.00 46.49 3.02
142 143 4.612412 TGCCACACCGTTCCCGAC 62.612 66.667 0.00 0.00 35.63 4.79
143 144 2.684192 AATTGCCACACCGTTCCCGA 62.684 55.000 0.00 0.00 35.63 5.14
144 145 0.956410 TAATTGCCACACCGTTCCCG 60.956 55.000 0.00 0.00 0.00 5.14
145 146 1.470051 ATAATTGCCACACCGTTCCC 58.530 50.000 0.00 0.00 0.00 3.97
146 147 3.275999 ACTATAATTGCCACACCGTTCC 58.724 45.455 0.00 0.00 0.00 3.62
147 148 5.114081 ACTACTATAATTGCCACACCGTTC 58.886 41.667 0.00 0.00 0.00 3.95
148 149 5.093849 ACTACTATAATTGCCACACCGTT 57.906 39.130 0.00 0.00 0.00 4.44
149 150 4.748277 ACTACTATAATTGCCACACCGT 57.252 40.909 0.00 0.00 0.00 4.83
150 151 4.684703 GCTACTACTATAATTGCCACACCG 59.315 45.833 0.00 0.00 0.00 4.94
151 152 4.684703 CGCTACTACTATAATTGCCACACC 59.315 45.833 0.00 0.00 0.00 4.16
152 153 4.150098 GCGCTACTACTATAATTGCCACAC 59.850 45.833 0.00 0.00 0.00 3.82
153 154 4.304110 GCGCTACTACTATAATTGCCACA 58.696 43.478 0.00 0.00 0.00 4.17
154 155 3.364023 CGCGCTACTACTATAATTGCCAC 59.636 47.826 5.56 0.00 0.00 5.01
155 156 3.005050 ACGCGCTACTACTATAATTGCCA 59.995 43.478 5.73 0.00 0.00 4.92
156 157 3.572584 ACGCGCTACTACTATAATTGCC 58.427 45.455 5.73 0.00 0.00 4.52
157 158 4.916249 AGAACGCGCTACTACTATAATTGC 59.084 41.667 5.73 0.00 0.00 3.56
158 159 5.164177 GCAGAACGCGCTACTACTATAATTG 60.164 44.000 5.73 0.00 0.00 2.32
159 160 4.916249 GCAGAACGCGCTACTACTATAATT 59.084 41.667 5.73 0.00 0.00 1.40
160 161 4.474113 GCAGAACGCGCTACTACTATAAT 58.526 43.478 5.73 0.00 0.00 1.28
161 162 3.304257 GGCAGAACGCGCTACTACTATAA 60.304 47.826 5.73 0.00 43.84 0.98
162 163 2.225019 GGCAGAACGCGCTACTACTATA 59.775 50.000 5.73 0.00 43.84 1.31
163 164 1.001597 GGCAGAACGCGCTACTACTAT 60.002 52.381 5.73 0.00 43.84 2.12
164 165 0.379669 GGCAGAACGCGCTACTACTA 59.620 55.000 5.73 0.00 43.84 1.82
165 166 1.139095 GGCAGAACGCGCTACTACT 59.861 57.895 5.73 0.00 43.84 2.57
166 167 3.689411 GGCAGAACGCGCTACTAC 58.311 61.111 5.73 0.00 43.84 2.73
192 193 4.608951 ACTATTACACGCTTAGCAGTAGC 58.391 43.478 4.70 0.00 42.56 3.58
193 194 5.852229 GCTACTATTACACGCTTAGCAGTAG 59.148 44.000 16.36 16.36 38.05 2.57
194 195 5.559608 CGCTACTATTACACGCTTAGCAGTA 60.560 44.000 4.70 3.70 33.07 2.74
195 196 4.608951 GCTACTATTACACGCTTAGCAGT 58.391 43.478 4.70 4.75 33.60 4.40
196 197 3.664486 CGCTACTATTACACGCTTAGCAG 59.336 47.826 4.70 0.00 33.07 4.24
197 198 3.624900 CGCTACTATTACACGCTTAGCA 58.375 45.455 4.70 0.00 33.07 3.49
198 199 2.404361 GCGCTACTATTACACGCTTAGC 59.596 50.000 0.00 0.00 45.71 3.09
204 205 1.831343 AACGGCGCTACTATTACACG 58.169 50.000 6.90 0.00 0.00 4.49
205 206 4.026558 GGTAAAACGGCGCTACTATTACAC 60.027 45.833 6.90 2.76 0.00 2.90
206 207 4.111916 GGTAAAACGGCGCTACTATTACA 58.888 43.478 6.90 0.00 0.00 2.41
207 208 4.111916 TGGTAAAACGGCGCTACTATTAC 58.888 43.478 6.90 10.67 0.00 1.89
208 209 4.097741 TCTGGTAAAACGGCGCTACTATTA 59.902 41.667 6.90 0.00 0.00 0.98
209 210 3.119029 TCTGGTAAAACGGCGCTACTATT 60.119 43.478 6.90 0.00 0.00 1.73
210 211 2.428171 TCTGGTAAAACGGCGCTACTAT 59.572 45.455 6.90 0.00 0.00 2.12
211 212 1.818060 TCTGGTAAAACGGCGCTACTA 59.182 47.619 6.90 3.52 0.00 1.82
212 213 0.604578 TCTGGTAAAACGGCGCTACT 59.395 50.000 6.90 0.00 0.00 2.57
213 214 0.717784 GTCTGGTAAAACGGCGCTAC 59.282 55.000 6.90 6.32 0.00 3.58
214 215 0.733566 CGTCTGGTAAAACGGCGCTA 60.734 55.000 6.90 0.00 35.32 4.26
215 216 2.025418 CGTCTGGTAAAACGGCGCT 61.025 57.895 6.90 0.00 35.32 5.92
216 217 2.472934 CGTCTGGTAAAACGGCGC 59.527 61.111 6.90 0.00 35.32 6.53
217 218 2.472934 GCGTCTGGTAAAACGGCG 59.527 61.111 4.80 4.80 39.24 6.46
218 219 2.472934 CGCGTCTGGTAAAACGGC 59.527 61.111 0.00 0.00 39.24 5.68
219 220 0.733566 TAGCGCGTCTGGTAAAACGG 60.734 55.000 8.43 0.00 39.24 4.44
220 221 0.364515 GTAGCGCGTCTGGTAAAACG 59.635 55.000 8.43 0.00 41.68 3.60
221 222 1.389106 CAGTAGCGCGTCTGGTAAAAC 59.611 52.381 21.17 0.00 0.00 2.43
222 223 1.705256 CAGTAGCGCGTCTGGTAAAA 58.295 50.000 21.17 0.00 0.00 1.52
223 224 0.734942 GCAGTAGCGCGTCTGGTAAA 60.735 55.000 26.64 0.00 32.94 2.01
224 225 1.153901 GCAGTAGCGCGTCTGGTAA 60.154 57.895 26.64 0.05 32.94 2.85
225 226 2.488355 GCAGTAGCGCGTCTGGTA 59.512 61.111 26.64 2.73 32.94 3.25
227 228 5.904828 CTACTTAGCAGTAGCGCGTCTGG 62.905 56.522 26.64 16.77 44.85 3.86
228 229 2.851386 CTACTTAGCAGTAGCGCGTCTG 60.851 54.545 23.41 23.41 44.85 3.51
229 230 1.331138 CTACTTAGCAGTAGCGCGTCT 59.669 52.381 8.43 8.22 44.85 4.18
230 231 1.744374 CTACTTAGCAGTAGCGCGTC 58.256 55.000 8.43 0.00 44.85 5.19
231 232 3.920144 CTACTTAGCAGTAGCGCGT 57.080 52.632 8.43 0.00 44.85 6.01
242 243 1.676529 TGAGGCGCTACTGCTACTTAG 59.323 52.381 7.64 0.00 36.97 2.18
243 244 1.758936 TGAGGCGCTACTGCTACTTA 58.241 50.000 7.64 0.00 36.97 2.24
244 245 1.115467 ATGAGGCGCTACTGCTACTT 58.885 50.000 7.64 0.00 36.97 2.24
245 246 1.115467 AATGAGGCGCTACTGCTACT 58.885 50.000 7.64 0.00 36.97 2.57
246 247 1.941325 AAATGAGGCGCTACTGCTAC 58.059 50.000 7.64 0.00 36.97 3.58
247 248 2.691409 AAAATGAGGCGCTACTGCTA 57.309 45.000 7.64 0.00 36.97 3.49
248 249 2.678336 GTTAAAATGAGGCGCTACTGCT 59.322 45.455 7.64 0.00 36.97 4.24
249 250 2.418628 TGTTAAAATGAGGCGCTACTGC 59.581 45.455 7.64 0.00 0.00 4.40
250 251 4.678509 TTGTTAAAATGAGGCGCTACTG 57.321 40.909 7.64 0.00 0.00 2.74
251 252 4.378046 CGTTTGTTAAAATGAGGCGCTACT 60.378 41.667 7.64 0.00 34.71 2.57
252 253 3.844099 CGTTTGTTAAAATGAGGCGCTAC 59.156 43.478 7.64 1.94 34.71 3.58
253 254 3.499157 ACGTTTGTTAAAATGAGGCGCTA 59.501 39.130 7.64 0.00 36.07 4.26
254 255 2.292292 ACGTTTGTTAAAATGAGGCGCT 59.708 40.909 7.64 0.00 36.07 5.92
255 256 2.657184 ACGTTTGTTAAAATGAGGCGC 58.343 42.857 0.00 0.00 36.07 6.53
256 257 5.338559 CAGTAACGTTTGTTAAAATGAGGCG 59.661 40.000 5.91 0.00 41.99 5.52
257 258 5.627780 CCAGTAACGTTTGTTAAAATGAGGC 59.372 40.000 5.91 0.00 41.99 4.70
258 259 6.731164 ACCAGTAACGTTTGTTAAAATGAGG 58.269 36.000 5.91 0.00 41.99 3.86
259 260 9.719279 TTTACCAGTAACGTTTGTTAAAATGAG 57.281 29.630 5.91 0.00 41.99 2.90
265 266 9.719279 CAGAATTTTACCAGTAACGTTTGTTAA 57.281 29.630 5.91 0.00 41.99 2.01
266 267 8.891720 ACAGAATTTTACCAGTAACGTTTGTTA 58.108 29.630 5.91 0.00 39.54 2.41
267 268 7.698970 CACAGAATTTTACCAGTAACGTTTGTT 59.301 33.333 5.91 0.00 42.19 2.83
268 269 7.148205 ACACAGAATTTTACCAGTAACGTTTGT 60.148 33.333 5.91 1.86 0.00 2.83
269 270 7.190871 ACACAGAATTTTACCAGTAACGTTTG 58.809 34.615 5.91 0.00 0.00 2.93
270 271 7.324354 ACACAGAATTTTACCAGTAACGTTT 57.676 32.000 5.91 0.00 0.00 3.60
271 272 6.930667 ACACAGAATTTTACCAGTAACGTT 57.069 33.333 5.88 5.88 0.00 3.99
272 273 9.709495 TTATACACAGAATTTTACCAGTAACGT 57.291 29.630 0.00 0.00 0.00 3.99
277 278 9.582648 AAACCTTATACACAGAATTTTACCAGT 57.417 29.630 0.00 0.00 0.00 4.00
280 281 9.850628 GGAAAACCTTATACACAGAATTTTACC 57.149 33.333 0.00 0.00 0.00 2.85
281 282 9.850628 GGGAAAACCTTATACACAGAATTTTAC 57.149 33.333 0.00 0.00 35.85 2.01
362 363 1.113788 TCATATTTGGGGCAGCTTGC 58.886 50.000 0.00 0.00 44.08 4.01
373 374 6.238211 GGACCATGAAAGAGTCGTCATATTTG 60.238 42.308 10.83 2.90 33.15 2.32
374 375 5.817816 GGACCATGAAAGAGTCGTCATATTT 59.182 40.000 10.83 0.00 33.15 1.40
377 378 3.767131 TGGACCATGAAAGAGTCGTCATA 59.233 43.478 10.83 0.00 33.15 2.15
378 379 2.567169 TGGACCATGAAAGAGTCGTCAT 59.433 45.455 6.55 6.55 34.78 3.06
430 448 1.004610 CTTGCGCCATATGTCGACAAG 60.005 52.381 24.13 20.34 35.43 3.16
462 480 4.844884 AGGACTTATGAACTAAACAGGGC 58.155 43.478 0.00 0.00 0.00 5.19
464 482 8.705048 GTCTTAGGACTTATGAACTAAACAGG 57.295 38.462 0.00 0.00 39.24 4.00
512 530 9.388506 GGTAGGGACTTTTTAGGAACTTATAAC 57.611 37.037 0.00 0.00 39.49 1.89
513 531 9.342736 AGGTAGGGACTTTTTAGGAACTTATAA 57.657 33.333 0.00 0.00 39.49 0.98
514 532 8.765517 CAGGTAGGGACTTTTTAGGAACTTATA 58.234 37.037 0.00 0.00 39.49 0.98
515 533 7.239143 ACAGGTAGGGACTTTTTAGGAACTTAT 59.761 37.037 0.00 0.00 39.49 1.73
516 534 6.559921 ACAGGTAGGGACTTTTTAGGAACTTA 59.440 38.462 0.00 0.00 39.49 2.24
517 535 5.371769 ACAGGTAGGGACTTTTTAGGAACTT 59.628 40.000 0.00 0.00 39.49 2.66
518 536 4.912133 ACAGGTAGGGACTTTTTAGGAACT 59.088 41.667 0.00 0.00 41.75 3.01
519 537 5.238624 ACAGGTAGGGACTTTTTAGGAAC 57.761 43.478 0.00 0.00 41.75 3.62
520 538 5.917545 AACAGGTAGGGACTTTTTAGGAA 57.082 39.130 0.00 0.00 41.75 3.36
521 539 5.457052 CCAAACAGGTAGGGACTTTTTAGGA 60.457 44.000 0.00 0.00 41.75 2.94
522 540 4.765339 CCAAACAGGTAGGGACTTTTTAGG 59.235 45.833 0.00 0.00 41.75 2.69
523 541 5.959618 CCAAACAGGTAGGGACTTTTTAG 57.040 43.478 0.00 0.00 41.75 1.85
537 555 2.938956 AGTCTCAGGAACCAAACAGG 57.061 50.000 0.00 0.00 45.67 4.00
538 556 7.066284 CCATATTAAGTCTCAGGAACCAAACAG 59.934 40.741 0.00 0.00 0.00 3.16
539 557 6.884295 CCATATTAAGTCTCAGGAACCAAACA 59.116 38.462 0.00 0.00 0.00 2.83
540 558 7.065923 GTCCATATTAAGTCTCAGGAACCAAAC 59.934 40.741 0.00 0.00 0.00 2.93
541 559 7.037586 AGTCCATATTAAGTCTCAGGAACCAAA 60.038 37.037 0.00 0.00 0.00 3.28
542 560 6.443849 AGTCCATATTAAGTCTCAGGAACCAA 59.556 38.462 0.00 0.00 0.00 3.67
543 561 5.964477 AGTCCATATTAAGTCTCAGGAACCA 59.036 40.000 0.00 0.00 0.00 3.67
544 562 6.487299 AGTCCATATTAAGTCTCAGGAACC 57.513 41.667 0.00 0.00 0.00 3.62
545 563 9.886132 TTTTAGTCCATATTAAGTCTCAGGAAC 57.114 33.333 0.00 0.00 0.00 3.62
547 565 9.488762 TCTTTTAGTCCATATTAAGTCTCAGGA 57.511 33.333 0.00 0.00 0.00 3.86
548 566 9.535878 GTCTTTTAGTCCATATTAAGTCTCAGG 57.464 37.037 0.00 0.00 0.00 3.86
549 567 9.535878 GGTCTTTTAGTCCATATTAAGTCTCAG 57.464 37.037 0.00 0.00 0.00 3.35
550 568 9.042450 TGGTCTTTTAGTCCATATTAAGTCTCA 57.958 33.333 0.00 0.00 28.55 3.27
589 607 9.416284 CTCTTAAAGAGAGTCTTATAGGGACTT 57.584 37.037 10.43 0.00 45.07 3.01
590 608 8.990163 CTCTTAAAGAGAGTCTTATAGGGACT 57.010 38.462 9.30 9.30 45.07 3.85
613 631 9.952188 GGCATTTGGACTTATAAAATAAGACTC 57.048 33.333 12.43 2.39 0.00 3.36
614 632 9.700831 AGGCATTTGGACTTATAAAATAAGACT 57.299 29.630 12.43 0.00 0.00 3.24
625 643 8.914011 GGACTTAAATTAGGCATTTGGACTTAT 58.086 33.333 0.00 0.00 35.71 1.73
626 644 8.113462 AGGACTTAAATTAGGCATTTGGACTTA 58.887 33.333 0.00 0.00 35.71 2.24
627 645 6.954102 AGGACTTAAATTAGGCATTTGGACTT 59.046 34.615 0.00 0.00 35.71 3.01
628 646 6.494059 AGGACTTAAATTAGGCATTTGGACT 58.506 36.000 0.00 0.00 35.71 3.85
629 647 6.775594 AGGACTTAAATTAGGCATTTGGAC 57.224 37.500 0.00 0.00 35.71 4.02
646 664 8.097662 CCAAACAGAAGAGACTTATAAGGACTT 58.902 37.037 16.73 16.07 0.00 3.01
647 665 7.235812 ACCAAACAGAAGAGACTTATAAGGACT 59.764 37.037 16.73 14.18 0.00 3.85
648 666 7.387643 ACCAAACAGAAGAGACTTATAAGGAC 58.612 38.462 16.73 10.00 0.00 3.85
649 667 7.554959 ACCAAACAGAAGAGACTTATAAGGA 57.445 36.000 16.73 0.00 0.00 3.36
650 668 8.622948 AAACCAAACAGAAGAGACTTATAAGG 57.377 34.615 16.73 0.00 0.00 2.69
654 672 9.442047 CATCTAAACCAAACAGAAGAGACTTAT 57.558 33.333 0.00 0.00 0.00 1.73
655 673 7.878127 CCATCTAAACCAAACAGAAGAGACTTA 59.122 37.037 0.00 0.00 0.00 2.24
656 674 6.712547 CCATCTAAACCAAACAGAAGAGACTT 59.287 38.462 0.00 0.00 0.00 3.01
657 675 6.043243 TCCATCTAAACCAAACAGAAGAGACT 59.957 38.462 0.00 0.00 0.00 3.24
658 676 6.231211 TCCATCTAAACCAAACAGAAGAGAC 58.769 40.000 0.00 0.00 0.00 3.36
659 677 6.433847 TCCATCTAAACCAAACAGAAGAGA 57.566 37.500 0.00 0.00 0.00 3.10
660 678 6.712547 AGTTCCATCTAAACCAAACAGAAGAG 59.287 38.462 0.00 0.00 0.00 2.85
661 679 6.601332 AGTTCCATCTAAACCAAACAGAAGA 58.399 36.000 0.00 0.00 0.00 2.87
662 680 6.884280 AGTTCCATCTAAACCAAACAGAAG 57.116 37.500 0.00 0.00 0.00 2.85
663 681 8.754991 TTAAGTTCCATCTAAACCAAACAGAA 57.245 30.769 0.00 0.00 0.00 3.02
664 682 8.754991 TTTAAGTTCCATCTAAACCAAACAGA 57.245 30.769 0.00 0.00 0.00 3.41
665 683 9.810545 TTTTTAAGTTCCATCTAAACCAAACAG 57.189 29.630 0.00 0.00 0.00 3.16
694 712 7.865889 GTGTTTGGTTACAGGGATTTAAAAGAG 59.134 37.037 0.00 0.00 0.00 2.85
695 713 7.201929 GGTGTTTGGTTACAGGGATTTAAAAGA 60.202 37.037 0.00 0.00 0.00 2.52
696 714 6.926826 GGTGTTTGGTTACAGGGATTTAAAAG 59.073 38.462 0.00 0.00 0.00 2.27
697 715 6.183360 GGGTGTTTGGTTACAGGGATTTAAAA 60.183 38.462 0.00 0.00 0.00 1.52
698 716 5.304871 GGGTGTTTGGTTACAGGGATTTAAA 59.695 40.000 0.00 0.00 0.00 1.52
699 717 4.833938 GGGTGTTTGGTTACAGGGATTTAA 59.166 41.667 0.00 0.00 0.00 1.52
700 718 4.106663 AGGGTGTTTGGTTACAGGGATTTA 59.893 41.667 0.00 0.00 0.00 1.40
701 719 3.116900 AGGGTGTTTGGTTACAGGGATTT 60.117 43.478 0.00 0.00 0.00 2.17
702 720 2.449345 AGGGTGTTTGGTTACAGGGATT 59.551 45.455 0.00 0.00 0.00 3.01
703 721 2.041216 GAGGGTGTTTGGTTACAGGGAT 59.959 50.000 0.00 0.00 0.00 3.85
704 722 1.422402 GAGGGTGTTTGGTTACAGGGA 59.578 52.381 0.00 0.00 0.00 4.20
705 723 1.423921 AGAGGGTGTTTGGTTACAGGG 59.576 52.381 0.00 0.00 0.00 4.45
706 724 2.951229 AGAGGGTGTTTGGTTACAGG 57.049 50.000 0.00 0.00 0.00 4.00
707 725 6.238648 AGATTTAGAGGGTGTTTGGTTACAG 58.761 40.000 0.00 0.00 0.00 2.74
708 726 6.195600 AGATTTAGAGGGTGTTTGGTTACA 57.804 37.500 0.00 0.00 0.00 2.41
709 727 7.392418 AGTAGATTTAGAGGGTGTTTGGTTAC 58.608 38.462 0.00 0.00 0.00 2.50
710 728 7.456902 AGAGTAGATTTAGAGGGTGTTTGGTTA 59.543 37.037 0.00 0.00 0.00 2.85
711 729 6.272558 AGAGTAGATTTAGAGGGTGTTTGGTT 59.727 38.462 0.00 0.00 0.00 3.67
712 730 5.785940 AGAGTAGATTTAGAGGGTGTTTGGT 59.214 40.000 0.00 0.00 0.00 3.67
713 731 6.109359 CAGAGTAGATTTAGAGGGTGTTTGG 58.891 44.000 0.00 0.00 0.00 3.28
714 732 6.702329 ACAGAGTAGATTTAGAGGGTGTTTG 58.298 40.000 0.00 0.00 0.00 2.93
715 733 6.936968 ACAGAGTAGATTTAGAGGGTGTTT 57.063 37.500 0.00 0.00 0.00 2.83
716 734 6.726764 AGAACAGAGTAGATTTAGAGGGTGTT 59.273 38.462 0.00 0.00 0.00 3.32
717 735 6.257586 AGAACAGAGTAGATTTAGAGGGTGT 58.742 40.000 0.00 0.00 0.00 4.16
718 736 6.783708 AGAACAGAGTAGATTTAGAGGGTG 57.216 41.667 0.00 0.00 0.00 4.61
719 737 6.381707 GGAAGAACAGAGTAGATTTAGAGGGT 59.618 42.308 0.00 0.00 0.00 4.34
720 738 6.609616 AGGAAGAACAGAGTAGATTTAGAGGG 59.390 42.308 0.00 0.00 0.00 4.30
721 739 7.559897 AGAGGAAGAACAGAGTAGATTTAGAGG 59.440 40.741 0.00 0.00 0.00 3.69
722 740 8.405531 CAGAGGAAGAACAGAGTAGATTTAGAG 58.594 40.741 0.00 0.00 0.00 2.43
723 741 7.891183 ACAGAGGAAGAACAGAGTAGATTTAGA 59.109 37.037 0.00 0.00 0.00 2.10
724 742 8.062065 ACAGAGGAAGAACAGAGTAGATTTAG 57.938 38.462 0.00 0.00 0.00 1.85
966 1022 1.085091 GTTCTCGCGTCTGGACTCTA 58.915 55.000 5.77 0.00 0.00 2.43
1199 1398 1.683011 CCTTGGTTATCCTGGCACCTG 60.683 57.143 9.94 4.58 34.23 4.00
1302 2128 0.593128 CCAATGGCGGATTCGGAATC 59.407 55.000 20.01 20.01 37.17 2.52
1307 2133 3.851620 CATTCCAATGGCGGATTCG 57.148 52.632 0.00 0.00 34.19 3.34
1323 2210 2.025887 ACAAGAAGCGAAAGGGATCCAT 60.026 45.455 15.23 2.55 0.00 3.41
1329 2216 0.517316 CCGAACAAGAAGCGAAAGGG 59.483 55.000 0.00 0.00 0.00 3.95
1362 2251 3.520290 TCGATTGGTTAATCTCTGCGT 57.480 42.857 0.00 0.00 40.43 5.24
1389 2322 2.588596 CACCTCTGCACACGCACA 60.589 61.111 0.00 0.00 45.36 4.57
1390 2323 2.280119 TCACCTCTGCACACGCAC 60.280 61.111 0.00 0.00 45.36 5.34
1395 2333 1.451504 CCTTGGTCACCTCTGCACA 59.548 57.895 0.00 0.00 0.00 4.57
1666 2631 2.353807 GACGACGACGACGACTCTA 58.646 57.895 25.15 0.00 42.66 2.43
1751 2732 2.029739 TCCTCTCGCGAAATGTACACAA 60.030 45.455 11.33 0.00 0.00 3.33
1812 2799 2.014857 CAGATCACTGTTCCATGGCTG 58.985 52.381 6.96 1.05 39.11 4.85
1829 2816 2.220824 CAGATTTTCACGCACGTTCAGA 59.779 45.455 0.00 0.00 0.00 3.27
1964 2958 3.484649 CGTGTATAAACCGTTGGATCTCG 59.515 47.826 0.00 0.00 0.00 4.04
1965 2959 4.427312 ACGTGTATAAACCGTTGGATCTC 58.573 43.478 0.00 0.00 31.31 2.75
1966 2960 4.427312 GACGTGTATAAACCGTTGGATCT 58.573 43.478 0.00 0.00 34.20 2.75
1967 2961 3.241322 CGACGTGTATAAACCGTTGGATC 59.759 47.826 0.00 0.00 34.20 3.36
1968 2962 3.181397 CGACGTGTATAAACCGTTGGAT 58.819 45.455 0.00 0.00 34.20 3.41
2036 4577 3.192001 CAGCAAGGTAACACAATGAGCAT 59.808 43.478 0.00 0.00 41.41 3.79
2055 4596 4.201970 ACTGAGAACTCGTAATCTAGCAGC 60.202 45.833 0.00 0.00 0.00 5.25
2068 4609 7.373441 CACGTACATTTTTGAAACTGAGAACTC 59.627 37.037 0.00 0.00 0.00 3.01
2071 4612 6.964370 CACACGTACATTTTTGAAACTGAGAA 59.036 34.615 0.00 0.00 0.00 2.87
2073 4614 5.171337 GCACACGTACATTTTTGAAACTGAG 59.829 40.000 0.00 0.00 0.00 3.35
2084 4625 7.265673 ACTAATCTATGAGCACACGTACATTT 58.734 34.615 0.00 0.00 0.00 2.32
2085 4626 6.806751 ACTAATCTATGAGCACACGTACATT 58.193 36.000 0.00 0.00 0.00 2.71
2089 4630 6.204301 GGAGTACTAATCTATGAGCACACGTA 59.796 42.308 0.00 0.00 0.00 3.57
2091 4632 5.008712 TGGAGTACTAATCTATGAGCACACG 59.991 44.000 0.00 0.00 0.00 4.49
2104 4645 6.239217 TCTGCATCAATGTGGAGTACTAAT 57.761 37.500 0.00 0.00 38.53 1.73
2106 4647 5.675684 TTCTGCATCAATGTGGAGTACTA 57.324 39.130 0.00 0.00 38.53 1.82
2108 4649 5.124457 ACATTTCTGCATCAATGTGGAGTAC 59.876 40.000 18.31 0.00 41.18 2.73
2110 4651 4.084287 ACATTTCTGCATCAATGTGGAGT 58.916 39.130 18.31 0.00 41.18 3.85
2111 4652 4.157105 TGACATTTCTGCATCAATGTGGAG 59.843 41.667 22.15 1.18 42.46 3.86
2157 4698 2.777972 CCGCGGGGTTCAGTATCGA 61.778 63.158 20.10 0.00 0.00 3.59
2185 4915 8.335356 TCGTCTGAACTGAAAAATGAAACTTAG 58.665 33.333 0.00 0.00 0.00 2.18
2195 4925 8.749841 TTTTGAAAATCGTCTGAACTGAAAAA 57.250 26.923 0.00 0.00 0.00 1.94
2212 4942 3.018149 ACGTGCCTACCACTTTTGAAAA 58.982 40.909 0.00 0.00 42.42 2.29
2348 6536 7.501559 TCGCTAGGAGTAGTACTATTCAACATT 59.498 37.037 22.50 8.49 0.00 2.71
2434 6622 4.546570 CGTCTTCCCAAAAGAAATGGAAC 58.453 43.478 0.00 0.00 40.56 3.62
2450 6638 2.877691 GCATGGGGTTGCGTCTTC 59.122 61.111 0.00 0.00 32.06 2.87
2555 6766 5.388371 GCCATGTTTCAAATTTTGTAGCGTC 60.388 40.000 8.89 0.00 0.00 5.19
2557 6768 4.432762 CGCCATGTTTCAAATTTTGTAGCG 60.433 41.667 8.89 6.91 0.00 4.26
2570 6781 4.146640 GAAACGGCGCCATGTTTC 57.853 55.556 30.96 30.96 44.79 2.78
2578 6789 0.451783 AATGAAGGATGAAACGGCGC 59.548 50.000 6.90 0.00 0.00 6.53
2579 6790 2.518949 CAAATGAAGGATGAAACGGCG 58.481 47.619 4.80 4.80 0.00 6.46
2580 6791 2.417243 CCCAAATGAAGGATGAAACGGC 60.417 50.000 0.00 0.00 0.00 5.68
2581 6792 2.417243 GCCCAAATGAAGGATGAAACGG 60.417 50.000 0.00 0.00 0.00 4.44
2582 6793 2.230992 TGCCCAAATGAAGGATGAAACG 59.769 45.455 0.00 0.00 0.00 3.60
2583 6794 3.959535 TGCCCAAATGAAGGATGAAAC 57.040 42.857 0.00 0.00 0.00 2.78
2584 6795 4.970860 TTTGCCCAAATGAAGGATGAAA 57.029 36.364 0.00 0.00 0.00 2.69
2600 6811 2.223845 AGCGTTGAATTTTGCATTTGCC 59.776 40.909 0.00 0.00 41.18 4.52
2606 6817 2.992543 GGCATAAGCGTTGAATTTTGCA 59.007 40.909 0.00 0.00 43.41 4.08
2607 6818 2.348362 GGGCATAAGCGTTGAATTTTGC 59.652 45.455 0.00 0.00 43.41 3.68
2613 6824 0.250945 TGGTGGGCATAAGCGTTGAA 60.251 50.000 0.00 0.00 43.41 2.69
2614 6825 0.250945 TTGGTGGGCATAAGCGTTGA 60.251 50.000 0.00 0.00 43.41 3.18
2624 6835 4.950200 AGCAGAATTTGGTGGGCA 57.050 50.000 0.00 0.00 35.85 5.36
2643 6854 5.248477 AGGCATGAGAGTTTTACTGGTTAGA 59.752 40.000 0.00 0.00 0.00 2.10
2651 6862 4.837972 AGAGGAAGGCATGAGAGTTTTAC 58.162 43.478 0.00 0.00 0.00 2.01
2659 6870 3.212685 GGATGAAAGAGGAAGGCATGAG 58.787 50.000 0.00 0.00 0.00 2.90
2663 6874 2.309755 ACATGGATGAAAGAGGAAGGCA 59.690 45.455 0.00 0.00 0.00 4.75
2669 6880 3.865745 GTCACGTACATGGATGAAAGAGG 59.134 47.826 3.49 0.00 0.00 3.69
2677 6888 6.627395 TTTCTTTTTGTCACGTACATGGAT 57.373 33.333 0.00 0.00 38.10 3.41
2678 6889 6.438259 TTTTCTTTTTGTCACGTACATGGA 57.562 33.333 0.00 0.00 38.10 3.41
2699 6910 8.907222 AATTCAAATAGGAATGTGCACTTTTT 57.093 26.923 19.41 12.40 37.55 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.