Multiple sequence alignment - TraesCS2B01G099300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G099300 chr2B 100.000 3047 0 0 1 3047 58804970 58801924 0.000000e+00 5627.0
1 TraesCS2B01G099300 chr2B 93.413 2581 159 6 476 3047 28322876 28320298 0.000000e+00 3814.0
2 TraesCS2B01G099300 chr2B 96.774 31 1 0 66 96 564556232 564556262 5.000000e-03 52.8
3 TraesCS2B01G099300 chr5B 96.117 2575 76 7 476 3047 6938148 6935595 0.000000e+00 4180.0
4 TraesCS2B01G099300 chr5B 95.863 2103 85 1 947 3047 615732986 615730884 0.000000e+00 3400.0
5 TraesCS2B01G099300 chr5B 96.403 417 14 1 476 891 615733649 615733233 0.000000e+00 686.0
6 TraesCS2B01G099300 chr5B 98.137 161 2 1 492 651 6933098 6932938 2.310000e-71 279.0
7 TraesCS2B01G099300 chr5B 94.886 176 8 1 477 651 615716008 615715833 1.080000e-69 274.0
8 TraesCS2B01G099300 chr5B 100.000 28 0 0 69 96 570178206 570178179 5.000000e-03 52.8
9 TraesCS2B01G099300 chr3B 88.915 2562 245 16 490 3047 784175850 784178376 0.000000e+00 3121.0
10 TraesCS2B01G099300 chrUn 88.692 2149 235 7 896 3038 76596838 76598984 0.000000e+00 2615.0
11 TraesCS2B01G099300 chrUn 75.773 2394 492 67 700 3047 77590095 77592446 0.000000e+00 1127.0
12 TraesCS2B01G099300 chrUn 88.942 416 35 8 490 897 76592413 76592825 1.260000e-138 503.0
13 TraesCS2B01G099300 chrUn 100.000 28 0 0 69 96 36591410 36591437 5.000000e-03 52.8
14 TraesCS2B01G099300 chr7B 89.592 1374 137 3 1675 3046 606273453 606272084 0.000000e+00 1740.0
15 TraesCS2B01G099300 chr7B 89.171 1182 102 14 490 1668 606284294 606283136 0.000000e+00 1450.0
16 TraesCS2B01G099300 chr2A 83.955 1689 230 31 476 2146 208565816 208567481 0.000000e+00 1580.0
17 TraesCS2B01G099300 chr2A 82.425 899 141 14 2155 3047 208567744 208568631 0.000000e+00 769.0
18 TraesCS2B01G099300 chr5D 75.834 2458 491 79 647 3046 339120306 339117894 0.000000e+00 1153.0
19 TraesCS2B01G099300 chr3D 75.960 2317 477 51 700 2979 569804746 569807019 0.000000e+00 1120.0
20 TraesCS2B01G099300 chr3A 89.328 759 79 2 580 1337 9858822 9859579 0.000000e+00 952.0
21 TraesCS2B01G099300 chr6B 76.893 1268 260 28 1745 2998 150781298 150782546 0.000000e+00 688.0
22 TraesCS2B01G099300 chr5A 78.747 894 158 24 647 1524 645441256 645440379 1.230000e-158 569.0
23 TraesCS2B01G099300 chr7A 72.348 1056 228 51 1757 2780 732013945 732014968 1.080000e-69 274.0
24 TraesCS2B01G099300 chr4B 94.286 35 2 0 62 96 183821860 183821826 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G099300 chr2B 58801924 58804970 3046 True 5627.0 5627 100.000 1 3047 1 chr2B.!!$R2 3046
1 TraesCS2B01G099300 chr2B 28320298 28322876 2578 True 3814.0 3814 93.413 476 3047 1 chr2B.!!$R1 2571
2 TraesCS2B01G099300 chr5B 6932938 6938148 5210 True 2229.5 4180 97.127 476 3047 2 chr5B.!!$R3 2571
3 TraesCS2B01G099300 chr5B 615730884 615733649 2765 True 2043.0 3400 96.133 476 3047 2 chr5B.!!$R4 2571
4 TraesCS2B01G099300 chr3B 784175850 784178376 2526 False 3121.0 3121 88.915 490 3047 1 chr3B.!!$F1 2557
5 TraesCS2B01G099300 chrUn 76596838 76598984 2146 False 2615.0 2615 88.692 896 3038 1 chrUn.!!$F3 2142
6 TraesCS2B01G099300 chrUn 77590095 77592446 2351 False 1127.0 1127 75.773 700 3047 1 chrUn.!!$F4 2347
7 TraesCS2B01G099300 chr7B 606272084 606273453 1369 True 1740.0 1740 89.592 1675 3046 1 chr7B.!!$R1 1371
8 TraesCS2B01G099300 chr7B 606283136 606284294 1158 True 1450.0 1450 89.171 490 1668 1 chr7B.!!$R2 1178
9 TraesCS2B01G099300 chr2A 208565816 208568631 2815 False 1174.5 1580 83.190 476 3047 2 chr2A.!!$F1 2571
10 TraesCS2B01G099300 chr5D 339117894 339120306 2412 True 1153.0 1153 75.834 647 3046 1 chr5D.!!$R1 2399
11 TraesCS2B01G099300 chr3D 569804746 569807019 2273 False 1120.0 1120 75.960 700 2979 1 chr3D.!!$F1 2279
12 TraesCS2B01G099300 chr3A 9858822 9859579 757 False 952.0 952 89.328 580 1337 1 chr3A.!!$F1 757
13 TraesCS2B01G099300 chr6B 150781298 150782546 1248 False 688.0 688 76.893 1745 2998 1 chr6B.!!$F1 1253
14 TraesCS2B01G099300 chr5A 645440379 645441256 877 True 569.0 569 78.747 647 1524 1 chr5A.!!$R1 877
15 TraesCS2B01G099300 chr7A 732013945 732014968 1023 False 274.0 274 72.348 1757 2780 1 chr7A.!!$F1 1023

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
207 208 0.035458 CCCAACCAAAGAGTCGCTCT 59.965 55.0 3.88 3.88 43.37 4.09 F
251 252 0.105964 TGTTCGCTGGCTGTTGTAGT 59.894 50.0 0.00 0.00 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1061 1325 3.319405 GTCAAGCTCGAGATATTGGGAGA 59.681 47.826 18.75 0.0 0.0 3.71 R
2221 2820 4.740268 TCAATTGAGCATGCATTGTCTTC 58.260 39.130 21.98 7.2 0.0 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.508128 CCATGGTCGACGGGTCCG 62.508 72.222 9.92 7.97 46.03 4.79
27 28 3.690745 CGGGTCCGTCAACCTAGT 58.309 61.111 0.55 0.00 39.42 2.57
28 29 1.969862 CGGGTCCGTCAACCTAGTT 59.030 57.895 0.55 0.00 39.42 2.24
29 30 0.319405 CGGGTCCGTCAACCTAGTTT 59.681 55.000 0.55 0.00 39.42 2.66
30 31 1.670967 CGGGTCCGTCAACCTAGTTTC 60.671 57.143 0.55 0.00 39.42 2.78
31 32 1.622312 GGGTCCGTCAACCTAGTTTCT 59.378 52.381 0.00 0.00 39.42 2.52
32 33 2.353505 GGGTCCGTCAACCTAGTTTCTC 60.354 54.545 0.00 0.00 39.42 2.87
33 34 2.353505 GGTCCGTCAACCTAGTTTCTCC 60.354 54.545 0.00 0.00 36.32 3.71
34 35 2.561858 GTCCGTCAACCTAGTTTCTCCT 59.438 50.000 0.00 0.00 0.00 3.69
35 36 3.006644 GTCCGTCAACCTAGTTTCTCCTT 59.993 47.826 0.00 0.00 0.00 3.36
36 37 3.644738 TCCGTCAACCTAGTTTCTCCTTT 59.355 43.478 0.00 0.00 0.00 3.11
37 38 3.995048 CCGTCAACCTAGTTTCTCCTTTC 59.005 47.826 0.00 0.00 0.00 2.62
38 39 4.262506 CCGTCAACCTAGTTTCTCCTTTCT 60.263 45.833 0.00 0.00 0.00 2.52
39 40 4.686554 CGTCAACCTAGTTTCTCCTTTCTG 59.313 45.833 0.00 0.00 0.00 3.02
40 41 4.998033 GTCAACCTAGTTTCTCCTTTCTGG 59.002 45.833 0.00 0.00 37.10 3.86
41 42 4.658901 TCAACCTAGTTTCTCCTTTCTGGT 59.341 41.667 0.00 0.00 37.07 4.00
42 43 5.132144 TCAACCTAGTTTCTCCTTTCTGGTT 59.868 40.000 0.00 0.00 35.92 3.67
43 44 5.648330 ACCTAGTTTCTCCTTTCTGGTTT 57.352 39.130 0.00 0.00 37.07 3.27
44 45 5.377478 ACCTAGTTTCTCCTTTCTGGTTTG 58.623 41.667 0.00 0.00 37.07 2.93
45 46 4.762251 CCTAGTTTCTCCTTTCTGGTTTGG 59.238 45.833 0.00 0.00 37.07 3.28
46 47 3.566351 AGTTTCTCCTTTCTGGTTTGGG 58.434 45.455 0.00 0.00 37.07 4.12
47 48 2.628178 GTTTCTCCTTTCTGGTTTGGGG 59.372 50.000 0.00 0.00 37.07 4.96
48 49 1.529744 TCTCCTTTCTGGTTTGGGGT 58.470 50.000 0.00 0.00 37.07 4.95
49 50 1.423921 TCTCCTTTCTGGTTTGGGGTC 59.576 52.381 0.00 0.00 37.07 4.46
50 51 1.425448 CTCCTTTCTGGTTTGGGGTCT 59.575 52.381 0.00 0.00 37.07 3.85
51 52 1.856920 TCCTTTCTGGTTTGGGGTCTT 59.143 47.619 0.00 0.00 37.07 3.01
52 53 2.158519 TCCTTTCTGGTTTGGGGTCTTC 60.159 50.000 0.00 0.00 37.07 2.87
53 54 2.158460 CCTTTCTGGTTTGGGGTCTTCT 60.158 50.000 0.00 0.00 0.00 2.85
54 55 3.566351 CTTTCTGGTTTGGGGTCTTCTT 58.434 45.455 0.00 0.00 0.00 2.52
55 56 3.680777 TTCTGGTTTGGGGTCTTCTTT 57.319 42.857 0.00 0.00 0.00 2.52
56 57 3.223674 TCTGGTTTGGGGTCTTCTTTC 57.776 47.619 0.00 0.00 0.00 2.62
57 58 2.783510 TCTGGTTTGGGGTCTTCTTTCT 59.216 45.455 0.00 0.00 0.00 2.52
58 59 3.204382 TCTGGTTTGGGGTCTTCTTTCTT 59.796 43.478 0.00 0.00 0.00 2.52
59 60 3.960755 CTGGTTTGGGGTCTTCTTTCTTT 59.039 43.478 0.00 0.00 0.00 2.52
60 61 3.704061 TGGTTTGGGGTCTTCTTTCTTTG 59.296 43.478 0.00 0.00 0.00 2.77
61 62 3.704566 GGTTTGGGGTCTTCTTTCTTTGT 59.295 43.478 0.00 0.00 0.00 2.83
62 63 4.891168 GGTTTGGGGTCTTCTTTCTTTGTA 59.109 41.667 0.00 0.00 0.00 2.41
63 64 5.361571 GGTTTGGGGTCTTCTTTCTTTGTAA 59.638 40.000 0.00 0.00 0.00 2.41
64 65 6.041637 GGTTTGGGGTCTTCTTTCTTTGTAAT 59.958 38.462 0.00 0.00 0.00 1.89
65 66 7.231925 GGTTTGGGGTCTTCTTTCTTTGTAATA 59.768 37.037 0.00 0.00 0.00 0.98
66 67 8.635328 GTTTGGGGTCTTCTTTCTTTGTAATAA 58.365 33.333 0.00 0.00 0.00 1.40
67 68 7.996098 TGGGGTCTTCTTTCTTTGTAATAAG 57.004 36.000 0.00 0.00 0.00 1.73
68 69 7.523415 TGGGGTCTTCTTTCTTTGTAATAAGT 58.477 34.615 0.00 0.00 0.00 2.24
69 70 8.662255 TGGGGTCTTCTTTCTTTGTAATAAGTA 58.338 33.333 0.00 0.00 0.00 2.24
70 71 8.944029 GGGGTCTTCTTTCTTTGTAATAAGTAC 58.056 37.037 0.00 0.00 0.00 2.73
71 72 9.722184 GGGTCTTCTTTCTTTGTAATAAGTACT 57.278 33.333 0.00 0.00 33.46 2.73
78 79 9.298774 CTTTCTTTGTAATAAGTACTACCTCCG 57.701 37.037 0.00 0.00 33.46 4.63
79 80 7.944729 TCTTTGTAATAAGTACTACCTCCGT 57.055 36.000 0.00 0.00 33.46 4.69
80 81 7.989826 TCTTTGTAATAAGTACTACCTCCGTC 58.010 38.462 0.00 0.00 33.46 4.79
81 82 6.699575 TTGTAATAAGTACTACCTCCGTCC 57.300 41.667 0.00 0.00 33.46 4.79
82 83 4.816385 TGTAATAAGTACTACCTCCGTCCG 59.184 45.833 0.00 0.00 33.46 4.79
83 84 2.332063 TAAGTACTACCTCCGTCCGG 57.668 55.000 0.00 0.00 0.00 5.14
84 85 0.394899 AAGTACTACCTCCGTCCGGG 60.395 60.000 0.00 0.00 35.59 5.73
85 86 1.077429 GTACTACCTCCGTCCGGGT 60.077 63.158 0.00 0.00 39.40 5.28
86 87 0.681243 GTACTACCTCCGTCCGGGTT 60.681 60.000 0.00 0.00 37.07 4.11
87 88 0.039618 TACTACCTCCGTCCGGGTTT 59.960 55.000 0.00 0.00 37.07 3.27
88 89 0.039618 ACTACCTCCGTCCGGGTTTA 59.960 55.000 0.00 0.00 37.07 2.01
89 90 0.743097 CTACCTCCGTCCGGGTTTAG 59.257 60.000 0.00 0.68 37.07 1.85
90 91 0.331278 TACCTCCGTCCGGGTTTAGA 59.669 55.000 0.00 0.00 37.07 2.10
91 92 0.969409 ACCTCCGTCCGGGTTTAGAG 60.969 60.000 0.00 1.13 37.00 2.43
92 93 1.673808 CCTCCGTCCGGGTTTAGAGG 61.674 65.000 0.00 7.07 37.00 3.69
93 94 0.969409 CTCCGTCCGGGTTTAGAGGT 60.969 60.000 0.00 0.00 37.00 3.85
94 95 0.967380 TCCGTCCGGGTTTAGAGGTC 60.967 60.000 0.00 0.00 37.00 3.85
95 96 1.514553 CGTCCGGGTTTAGAGGTCC 59.485 63.158 0.00 0.00 0.00 4.46
96 97 1.514553 GTCCGGGTTTAGAGGTCCG 59.485 63.158 0.00 0.00 41.90 4.79
97 98 2.186125 CCGGGTTTAGAGGTCCGC 59.814 66.667 0.00 0.00 41.02 5.54
98 99 2.186125 CGGGTTTAGAGGTCCGCC 59.814 66.667 0.00 0.00 35.95 6.13
99 100 2.588439 GGGTTTAGAGGTCCGCCC 59.412 66.667 0.00 0.00 34.57 6.13
100 101 2.186125 GGTTTAGAGGTCCGCCCG 59.814 66.667 0.00 0.00 38.74 6.13
101 102 2.353610 GGTTTAGAGGTCCGCCCGA 61.354 63.158 0.00 0.00 38.74 5.14
102 103 1.153686 GTTTAGAGGTCCGCCCGAC 60.154 63.158 0.00 0.00 41.15 4.79
109 110 2.592287 GTCCGCCCGACCAAAACA 60.592 61.111 0.00 0.00 35.23 2.83
110 111 2.592287 TCCGCCCGACCAAAACAC 60.592 61.111 0.00 0.00 0.00 3.32
111 112 3.666253 CCGCCCGACCAAAACACC 61.666 66.667 0.00 0.00 0.00 4.16
112 113 4.020378 CGCCCGACCAAAACACCG 62.020 66.667 0.00 0.00 0.00 4.94
113 114 3.666253 GCCCGACCAAAACACCGG 61.666 66.667 0.00 0.00 41.47 5.28
114 115 2.203238 CCCGACCAAAACACCGGT 60.203 61.111 0.00 0.00 40.30 5.28
115 116 1.071128 CCCGACCAAAACACCGGTA 59.929 57.895 6.87 0.00 40.30 4.02
116 117 1.229975 CCCGACCAAAACACCGGTAC 61.230 60.000 6.87 0.00 40.30 3.34
117 118 1.229975 CCGACCAAAACACCGGTACC 61.230 60.000 6.87 0.16 34.99 3.34
118 119 0.532417 CGACCAAAACACCGGTACCA 60.532 55.000 6.87 0.00 34.99 3.25
119 120 1.677942 GACCAAAACACCGGTACCAA 58.322 50.000 6.87 0.00 34.99 3.67
120 121 1.605232 GACCAAAACACCGGTACCAAG 59.395 52.381 6.87 4.94 34.99 3.61
121 122 0.955905 CCAAAACACCGGTACCAAGG 59.044 55.000 6.87 8.58 0.00 3.61
122 123 1.682740 CAAAACACCGGTACCAAGGT 58.317 50.000 6.87 9.30 42.34 3.50
123 124 2.486907 CCAAAACACCGGTACCAAGGTA 60.487 50.000 6.87 0.00 39.00 3.08
136 137 3.770046 ACCAAGGTACAACATTAACCCC 58.230 45.455 0.00 0.00 33.53 4.95
137 138 3.399983 ACCAAGGTACAACATTAACCCCT 59.600 43.478 0.00 0.00 33.53 4.79
138 139 3.761752 CCAAGGTACAACATTAACCCCTG 59.238 47.826 0.00 0.00 33.53 4.45
139 140 4.403734 CAAGGTACAACATTAACCCCTGT 58.596 43.478 0.00 0.00 33.53 4.00
140 141 4.734843 AGGTACAACATTAACCCCTGTT 57.265 40.909 0.00 0.00 36.04 3.16
141 142 5.069518 AGGTACAACATTAACCCCTGTTT 57.930 39.130 0.00 0.00 33.45 2.83
142 143 5.074804 AGGTACAACATTAACCCCTGTTTC 58.925 41.667 0.00 0.00 33.45 2.78
143 144 4.828387 GGTACAACATTAACCCCTGTTTCA 59.172 41.667 0.00 0.00 33.45 2.69
144 145 4.929819 ACAACATTAACCCCTGTTTCAC 57.070 40.909 0.00 0.00 33.45 3.18
145 146 3.639561 ACAACATTAACCCCTGTTTCACC 59.360 43.478 0.00 0.00 33.45 4.02
146 147 3.895041 CAACATTAACCCCTGTTTCACCT 59.105 43.478 0.00 0.00 33.45 4.00
147 148 3.763057 ACATTAACCCCTGTTTCACCTC 58.237 45.455 0.00 0.00 35.87 3.85
148 149 2.554370 TTAACCCCTGTTTCACCTCG 57.446 50.000 0.00 0.00 35.87 4.63
149 150 0.035739 TAACCCCTGTTTCACCTCGC 59.964 55.000 0.00 0.00 35.87 5.03
150 151 1.990160 AACCCCTGTTTCACCTCGCA 61.990 55.000 0.00 0.00 0.00 5.10
151 152 1.002134 CCCCTGTTTCACCTCGCAT 60.002 57.895 0.00 0.00 0.00 4.73
152 153 1.308069 CCCCTGTTTCACCTCGCATG 61.308 60.000 0.00 0.00 0.00 4.06
153 154 1.503542 CCTGTTTCACCTCGCATGC 59.496 57.895 7.91 7.91 0.00 4.06
154 155 1.236616 CCTGTTTCACCTCGCATGCA 61.237 55.000 19.57 4.02 0.00 3.96
155 156 0.806868 CTGTTTCACCTCGCATGCAT 59.193 50.000 19.57 0.00 0.00 3.96
156 157 0.522626 TGTTTCACCTCGCATGCATG 59.477 50.000 22.70 22.70 0.00 4.06
183 184 2.000429 CTTTACAAAGCATGCAGGCC 58.000 50.000 21.42 0.00 0.00 5.19
184 185 0.243365 TTTACAAAGCATGCAGGCCG 59.757 50.000 21.42 11.63 0.00 6.13
185 186 0.893270 TTACAAAGCATGCAGGCCGT 60.893 50.000 21.42 17.02 0.00 5.68
186 187 1.585267 TACAAAGCATGCAGGCCGTG 61.585 55.000 21.42 19.96 0.00 4.94
187 188 2.282391 AAAGCATGCAGGCCGTGA 60.282 55.556 21.42 0.00 31.89 4.35
188 189 2.629656 AAAGCATGCAGGCCGTGAC 61.630 57.895 21.42 0.00 31.89 3.67
191 192 4.720902 CATGCAGGCCGTGACCCA 62.721 66.667 0.00 0.00 31.89 4.51
192 193 3.965258 ATGCAGGCCGTGACCCAA 61.965 61.111 0.00 0.00 0.00 4.12
193 194 4.947147 TGCAGGCCGTGACCCAAC 62.947 66.667 0.00 0.00 0.00 3.77
195 196 4.263572 CAGGCCGTGACCCAACCA 62.264 66.667 0.00 0.00 0.00 3.67
196 197 3.494254 AGGCCGTGACCCAACCAA 61.494 61.111 0.00 0.00 0.00 3.67
197 198 2.519780 GGCCGTGACCCAACCAAA 60.520 61.111 0.00 0.00 0.00 3.28
198 199 2.561037 GGCCGTGACCCAACCAAAG 61.561 63.158 0.00 0.00 0.00 2.77
199 200 1.527380 GCCGTGACCCAACCAAAGA 60.527 57.895 0.00 0.00 0.00 2.52
200 201 1.515521 GCCGTGACCCAACCAAAGAG 61.516 60.000 0.00 0.00 0.00 2.85
201 202 0.179029 CCGTGACCCAACCAAAGAGT 60.179 55.000 0.00 0.00 0.00 3.24
202 203 1.226746 CGTGACCCAACCAAAGAGTC 58.773 55.000 0.00 0.00 0.00 3.36
203 204 1.226746 GTGACCCAACCAAAGAGTCG 58.773 55.000 0.00 0.00 0.00 4.18
204 205 0.534203 TGACCCAACCAAAGAGTCGC 60.534 55.000 0.00 0.00 0.00 5.19
205 206 0.250338 GACCCAACCAAAGAGTCGCT 60.250 55.000 0.00 0.00 0.00 4.93
206 207 0.250338 ACCCAACCAAAGAGTCGCTC 60.250 55.000 0.00 0.00 0.00 5.03
207 208 0.035458 CCCAACCAAAGAGTCGCTCT 59.965 55.000 3.88 3.88 43.37 4.09
208 209 1.433534 CCAACCAAAGAGTCGCTCTC 58.566 55.000 9.35 4.88 40.28 3.20
217 218 1.558741 GAGTCGCTCTCTCTTGCATG 58.441 55.000 0.00 0.00 39.86 4.06
218 219 0.459934 AGTCGCTCTCTCTTGCATGC 60.460 55.000 11.82 11.82 0.00 4.06
219 220 1.517913 TCGCTCTCTCTTGCATGCG 60.518 57.895 14.09 0.00 43.95 4.73
220 221 1.808799 CGCTCTCTCTTGCATGCGT 60.809 57.895 14.09 0.00 38.81 5.24
221 222 0.526310 CGCTCTCTCTTGCATGCGTA 60.526 55.000 14.09 2.39 38.81 4.42
222 223 1.207390 GCTCTCTCTTGCATGCGTAG 58.793 55.000 14.09 12.97 0.00 3.51
223 224 1.850377 CTCTCTCTTGCATGCGTAGG 58.150 55.000 14.09 7.35 0.00 3.18
224 225 0.461548 TCTCTCTTGCATGCGTAGGG 59.538 55.000 14.09 12.96 0.00 3.53
225 226 1.153369 TCTCTTGCATGCGTAGGGC 60.153 57.895 14.09 0.00 43.96 5.19
226 227 2.124736 TCTTGCATGCGTAGGGCC 60.125 61.111 14.09 0.00 42.61 5.80
227 228 3.576356 CTTGCATGCGTAGGGCCG 61.576 66.667 14.09 0.00 42.61 6.13
235 236 2.186903 CGTAGGGCCGCATCTGTT 59.813 61.111 0.00 0.00 0.00 3.16
236 237 1.883084 CGTAGGGCCGCATCTGTTC 60.883 63.158 0.00 0.00 0.00 3.18
237 238 1.883084 GTAGGGCCGCATCTGTTCG 60.883 63.158 0.00 0.00 0.00 3.95
238 239 3.733344 TAGGGCCGCATCTGTTCGC 62.733 63.158 0.00 0.00 0.00 4.70
240 241 3.869272 GGCCGCATCTGTTCGCTG 61.869 66.667 0.00 0.00 0.00 5.18
241 242 3.869272 GCCGCATCTGTTCGCTGG 61.869 66.667 0.00 0.00 0.00 4.85
242 243 3.869272 CCGCATCTGTTCGCTGGC 61.869 66.667 0.00 0.00 0.00 4.85
243 244 2.816958 CGCATCTGTTCGCTGGCT 60.817 61.111 0.00 0.00 0.00 4.75
244 245 2.789917 GCATCTGTTCGCTGGCTG 59.210 61.111 0.00 0.00 0.00 4.85
245 246 2.037136 GCATCTGTTCGCTGGCTGT 61.037 57.895 0.00 0.00 0.00 4.40
246 247 1.580845 GCATCTGTTCGCTGGCTGTT 61.581 55.000 0.00 0.00 0.00 3.16
247 248 0.167470 CATCTGTTCGCTGGCTGTTG 59.833 55.000 0.00 0.00 0.00 3.33
248 249 0.250467 ATCTGTTCGCTGGCTGTTGT 60.250 50.000 0.00 0.00 0.00 3.32
249 250 0.391228 TCTGTTCGCTGGCTGTTGTA 59.609 50.000 0.00 0.00 0.00 2.41
250 251 0.792640 CTGTTCGCTGGCTGTTGTAG 59.207 55.000 0.00 0.00 0.00 2.74
251 252 0.105964 TGTTCGCTGGCTGTTGTAGT 59.894 50.000 0.00 0.00 0.00 2.73
252 253 1.226746 GTTCGCTGGCTGTTGTAGTT 58.773 50.000 0.00 0.00 0.00 2.24
253 254 2.224090 TGTTCGCTGGCTGTTGTAGTTA 60.224 45.455 0.00 0.00 0.00 2.24
254 255 2.803956 GTTCGCTGGCTGTTGTAGTTAA 59.196 45.455 0.00 0.00 0.00 2.01
255 256 3.114668 TCGCTGGCTGTTGTAGTTAAA 57.885 42.857 0.00 0.00 0.00 1.52
256 257 3.670625 TCGCTGGCTGTTGTAGTTAAAT 58.329 40.909 0.00 0.00 0.00 1.40
257 258 3.435327 TCGCTGGCTGTTGTAGTTAAATG 59.565 43.478 0.00 0.00 0.00 2.32
258 259 3.435327 CGCTGGCTGTTGTAGTTAAATGA 59.565 43.478 0.00 0.00 0.00 2.57
259 260 4.094887 CGCTGGCTGTTGTAGTTAAATGAT 59.905 41.667 0.00 0.00 0.00 2.45
260 261 5.573146 GCTGGCTGTTGTAGTTAAATGATC 58.427 41.667 0.00 0.00 0.00 2.92
261 262 5.727791 GCTGGCTGTTGTAGTTAAATGATCG 60.728 44.000 0.00 0.00 0.00 3.69
262 263 4.094294 TGGCTGTTGTAGTTAAATGATCGC 59.906 41.667 0.00 0.00 0.00 4.58
263 264 4.094294 GGCTGTTGTAGTTAAATGATCGCA 59.906 41.667 0.00 0.00 0.00 5.10
264 265 5.258622 GCTGTTGTAGTTAAATGATCGCAG 58.741 41.667 0.00 0.00 0.00 5.18
265 266 5.063438 GCTGTTGTAGTTAAATGATCGCAGA 59.937 40.000 0.00 0.00 45.75 4.26
266 267 6.647212 TGTTGTAGTTAAATGATCGCAGAG 57.353 37.500 0.00 0.00 43.63 3.35
267 268 6.394809 TGTTGTAGTTAAATGATCGCAGAGA 58.605 36.000 0.00 0.00 43.63 3.10
268 269 6.531594 TGTTGTAGTTAAATGATCGCAGAGAG 59.468 38.462 0.00 0.00 43.63 3.20
269 270 6.451064 TGTAGTTAAATGATCGCAGAGAGA 57.549 37.500 0.00 0.00 43.63 3.10
270 271 6.266323 TGTAGTTAAATGATCGCAGAGAGAC 58.734 40.000 0.00 0.00 43.63 3.36
271 272 4.355437 AGTTAAATGATCGCAGAGAGACG 58.645 43.478 0.00 0.00 43.63 4.18
272 273 1.565305 AAATGATCGCAGAGAGACGC 58.435 50.000 0.00 0.00 43.63 5.19
273 274 0.457443 AATGATCGCAGAGAGACGCA 59.543 50.000 0.00 0.00 43.63 5.24
274 275 0.248825 ATGATCGCAGAGAGACGCAC 60.249 55.000 0.00 0.00 43.63 5.34
275 276 1.308783 TGATCGCAGAGAGACGCACT 61.309 55.000 0.00 0.00 43.63 4.40
276 277 0.658368 GATCGCAGAGAGACGCACTA 59.342 55.000 0.00 0.00 43.63 2.74
277 278 1.064208 GATCGCAGAGAGACGCACTAA 59.936 52.381 0.00 0.00 43.63 2.24
278 279 1.095600 TCGCAGAGAGACGCACTAAT 58.904 50.000 0.00 0.00 0.00 1.73
279 280 1.195347 CGCAGAGAGACGCACTAATG 58.805 55.000 0.00 0.00 0.00 1.90
295 296 6.817270 CACTAATGCATGGCTAATTTGTTC 57.183 37.500 0.00 0.00 0.00 3.18
296 297 6.567050 CACTAATGCATGGCTAATTTGTTCT 58.433 36.000 0.00 0.00 0.00 3.01
297 298 7.706159 CACTAATGCATGGCTAATTTGTTCTA 58.294 34.615 0.00 0.00 0.00 2.10
298 299 7.645340 CACTAATGCATGGCTAATTTGTTCTAC 59.355 37.037 0.00 0.00 0.00 2.59
299 300 6.780457 AATGCATGGCTAATTTGTTCTACT 57.220 33.333 0.00 0.00 0.00 2.57
300 301 6.780457 ATGCATGGCTAATTTGTTCTACTT 57.220 33.333 0.00 0.00 0.00 2.24
301 302 6.588719 TGCATGGCTAATTTGTTCTACTTT 57.411 33.333 0.00 0.00 0.00 2.66
302 303 6.991938 TGCATGGCTAATTTGTTCTACTTTT 58.008 32.000 0.00 0.00 0.00 2.27
303 304 7.441017 TGCATGGCTAATTTGTTCTACTTTTT 58.559 30.769 0.00 0.00 0.00 1.94
304 305 7.384660 TGCATGGCTAATTTGTTCTACTTTTTG 59.615 33.333 0.00 0.00 0.00 2.44
305 306 7.622048 GCATGGCTAATTTGTTCTACTTTTTGC 60.622 37.037 0.00 0.00 0.00 3.68
306 307 6.810911 TGGCTAATTTGTTCTACTTTTTGCA 58.189 32.000 0.00 0.00 0.00 4.08
307 308 6.922957 TGGCTAATTTGTTCTACTTTTTGCAG 59.077 34.615 0.00 0.00 0.00 4.41
308 309 6.923508 GGCTAATTTGTTCTACTTTTTGCAGT 59.076 34.615 0.00 0.00 0.00 4.40
309 310 7.096065 GGCTAATTTGTTCTACTTTTTGCAGTG 60.096 37.037 0.00 0.00 0.00 3.66
310 311 6.588348 AATTTGTTCTACTTTTTGCAGTGC 57.412 33.333 8.58 8.58 0.00 4.40
311 312 3.332761 TGTTCTACTTTTTGCAGTGCG 57.667 42.857 11.20 0.00 0.00 5.34
312 313 2.939756 TGTTCTACTTTTTGCAGTGCGA 59.060 40.909 11.20 5.61 0.00 5.10
313 314 3.563808 TGTTCTACTTTTTGCAGTGCGAT 59.436 39.130 11.20 0.00 0.00 4.58
314 315 4.752604 TGTTCTACTTTTTGCAGTGCGATA 59.247 37.500 11.20 0.21 0.00 2.92
315 316 5.237561 TGTTCTACTTTTTGCAGTGCGATAA 59.762 36.000 11.20 9.28 0.00 1.75
316 317 5.933187 TCTACTTTTTGCAGTGCGATAAA 57.067 34.783 11.20 8.09 0.00 1.40
317 318 5.927030 TCTACTTTTTGCAGTGCGATAAAG 58.073 37.500 23.61 23.61 32.15 1.85
318 319 3.900941 ACTTTTTGCAGTGCGATAAAGG 58.099 40.909 26.39 20.52 31.19 3.11
319 320 2.346099 TTTTGCAGTGCGATAAAGGC 57.654 45.000 11.20 0.00 0.00 4.35
320 321 1.242989 TTTGCAGTGCGATAAAGGCA 58.757 45.000 11.20 0.00 38.25 4.75
321 322 0.804364 TTGCAGTGCGATAAAGGCAG 59.196 50.000 11.20 0.00 41.83 4.85
322 323 1.063166 GCAGTGCGATAAAGGCAGC 59.937 57.895 0.00 0.00 41.83 5.25
323 324 1.349627 CAGTGCGATAAAGGCAGCG 59.650 57.895 0.00 0.00 41.83 5.18
324 325 1.815421 AGTGCGATAAAGGCAGCGG 60.815 57.895 0.00 0.00 41.83 5.52
325 326 3.202001 TGCGATAAAGGCAGCGGC 61.202 61.111 0.00 0.00 35.04 6.53
335 336 2.785258 GCAGCGGCCTTCTAAACG 59.215 61.111 0.00 0.00 0.00 3.60
338 339 3.116531 GCGGCCTTCTAAACGCGT 61.117 61.111 5.58 5.58 42.66 6.01
339 340 1.806758 GCGGCCTTCTAAACGCGTA 60.807 57.895 14.46 0.00 42.66 4.42
340 341 1.993706 CGGCCTTCTAAACGCGTAC 59.006 57.895 14.46 0.00 0.00 3.67
342 343 1.342810 GCCTTCTAAACGCGTACGC 59.657 57.895 29.83 29.83 45.53 4.42
358 359 2.202932 GCGGATGCGATGTCCAGT 60.203 61.111 12.10 0.00 35.41 4.00
359 360 2.528743 GCGGATGCGATGTCCAGTG 61.529 63.158 12.10 0.00 35.41 3.66
360 361 1.884464 CGGATGCGATGTCCAGTGG 60.884 63.158 0.00 1.40 35.41 4.00
361 362 1.524621 GGATGCGATGTCCAGTGGG 60.525 63.158 9.92 0.00 35.76 4.61
362 363 2.124570 ATGCGATGTCCAGTGGGC 60.125 61.111 6.88 6.88 0.00 5.36
363 364 2.599645 GATGCGATGTCCAGTGGGCT 62.600 60.000 16.31 0.00 0.00 5.19
364 365 2.045926 GCGATGTCCAGTGGGCTT 60.046 61.111 16.31 8.89 0.00 4.35
365 366 2.109126 GCGATGTCCAGTGGGCTTC 61.109 63.158 16.31 17.04 0.00 3.86
366 367 1.599047 CGATGTCCAGTGGGCTTCT 59.401 57.895 23.04 6.00 0.00 2.85
367 368 0.824109 CGATGTCCAGTGGGCTTCTA 59.176 55.000 23.04 1.04 0.00 2.10
368 369 1.207089 CGATGTCCAGTGGGCTTCTAA 59.793 52.381 23.04 0.66 0.00 2.10
369 370 2.158900 CGATGTCCAGTGGGCTTCTAAT 60.159 50.000 23.04 5.73 0.00 1.73
370 371 3.471680 GATGTCCAGTGGGCTTCTAATC 58.528 50.000 19.70 8.58 0.00 1.75
371 372 1.559682 TGTCCAGTGGGCTTCTAATCC 59.440 52.381 16.31 0.00 0.00 3.01
372 373 0.830648 TCCAGTGGGCTTCTAATCCG 59.169 55.000 9.92 0.00 0.00 4.18
373 374 0.179045 CCAGTGGGCTTCTAATCCGG 60.179 60.000 0.00 0.00 0.00 5.14
374 375 0.179045 CAGTGGGCTTCTAATCCGGG 60.179 60.000 0.00 0.00 0.00 5.73
375 376 0.326238 AGTGGGCTTCTAATCCGGGA 60.326 55.000 0.00 0.00 0.00 5.14
376 377 0.179054 GTGGGCTTCTAATCCGGGAC 60.179 60.000 0.00 0.00 0.00 4.46
391 392 1.618487 GGGACGGAGGTAGTATCTGG 58.382 60.000 0.00 0.00 0.00 3.86
392 393 0.960286 GGACGGAGGTAGTATCTGGC 59.040 60.000 0.00 0.00 0.00 4.85
393 394 1.479021 GGACGGAGGTAGTATCTGGCT 60.479 57.143 0.00 0.00 31.22 4.75
394 395 2.224719 GGACGGAGGTAGTATCTGGCTA 60.225 54.545 0.00 0.00 31.22 3.93
395 396 3.561744 GGACGGAGGTAGTATCTGGCTAT 60.562 52.174 0.00 0.00 31.22 2.97
396 397 3.422796 ACGGAGGTAGTATCTGGCTATG 58.577 50.000 0.00 0.00 0.00 2.23
397 398 3.074094 ACGGAGGTAGTATCTGGCTATGA 59.926 47.826 0.00 0.00 0.00 2.15
398 399 4.263994 ACGGAGGTAGTATCTGGCTATGAT 60.264 45.833 0.00 0.00 0.00 2.45
399 400 4.707448 CGGAGGTAGTATCTGGCTATGATT 59.293 45.833 0.00 0.00 0.00 2.57
400 401 5.186021 CGGAGGTAGTATCTGGCTATGATTT 59.814 44.000 0.00 0.00 0.00 2.17
401 402 6.295349 CGGAGGTAGTATCTGGCTATGATTTT 60.295 42.308 0.00 0.00 0.00 1.82
402 403 7.454225 GGAGGTAGTATCTGGCTATGATTTTT 58.546 38.462 0.00 0.00 0.00 1.94
403 404 7.604545 GGAGGTAGTATCTGGCTATGATTTTTC 59.395 40.741 0.00 0.00 0.00 2.29
404 405 8.034313 AGGTAGTATCTGGCTATGATTTTTCA 57.966 34.615 0.00 0.00 0.00 2.69
405 406 8.664079 AGGTAGTATCTGGCTATGATTTTTCAT 58.336 33.333 0.00 0.00 0.00 2.57
406 407 9.289782 GGTAGTATCTGGCTATGATTTTTCATT 57.710 33.333 0.00 0.00 0.00 2.57
409 410 9.638176 AGTATCTGGCTATGATTTTTCATTTCT 57.362 29.630 0.00 0.00 0.00 2.52
412 413 7.775120 TCTGGCTATGATTTTTCATTTCTTCC 58.225 34.615 0.00 0.00 0.00 3.46
413 414 7.396907 TCTGGCTATGATTTTTCATTTCTTCCA 59.603 33.333 0.00 0.00 0.00 3.53
414 415 7.322664 TGGCTATGATTTTTCATTTCTTCCAC 58.677 34.615 0.00 0.00 0.00 4.02
415 416 6.473455 GGCTATGATTTTTCATTTCTTCCACG 59.527 38.462 0.00 0.00 0.00 4.94
416 417 7.029563 GCTATGATTTTTCATTTCTTCCACGT 58.970 34.615 0.00 0.00 0.00 4.49
417 418 7.218963 GCTATGATTTTTCATTTCTTCCACGTC 59.781 37.037 0.00 0.00 0.00 4.34
418 419 6.633500 TGATTTTTCATTTCTTCCACGTCT 57.367 33.333 0.00 0.00 0.00 4.18
419 420 7.038154 TGATTTTTCATTTCTTCCACGTCTT 57.962 32.000 0.00 0.00 0.00 3.01
420 421 6.917477 TGATTTTTCATTTCTTCCACGTCTTG 59.083 34.615 0.00 0.00 0.00 3.02
421 422 3.896648 TTCATTTCTTCCACGTCTTGC 57.103 42.857 0.00 0.00 0.00 4.01
422 423 2.844946 TCATTTCTTCCACGTCTTGCA 58.155 42.857 0.00 0.00 0.00 4.08
423 424 3.411446 TCATTTCTTCCACGTCTTGCAT 58.589 40.909 0.00 0.00 0.00 3.96
424 425 3.189080 TCATTTCTTCCACGTCTTGCATG 59.811 43.478 0.00 0.00 0.00 4.06
425 426 2.254546 TTCTTCCACGTCTTGCATGT 57.745 45.000 0.00 0.00 0.00 3.21
426 427 3.394674 TTCTTCCACGTCTTGCATGTA 57.605 42.857 0.00 0.00 0.00 2.29
427 428 3.394674 TCTTCCACGTCTTGCATGTAA 57.605 42.857 0.00 0.00 0.00 2.41
428 429 3.325870 TCTTCCACGTCTTGCATGTAAG 58.674 45.455 16.62 16.62 0.00 2.34
429 430 3.006430 TCTTCCACGTCTTGCATGTAAGA 59.994 43.478 20.71 20.71 34.46 2.10
430 431 3.610040 TCCACGTCTTGCATGTAAGAT 57.390 42.857 26.01 11.11 38.79 2.40
431 432 3.261580 TCCACGTCTTGCATGTAAGATG 58.738 45.455 32.02 32.02 45.10 2.90
435 436 4.668576 CGTCTTGCATGTAAGATGTTGT 57.331 40.909 28.04 0.00 38.79 3.32
436 437 5.778161 CGTCTTGCATGTAAGATGTTGTA 57.222 39.130 28.04 6.24 38.79 2.41
437 438 6.164408 CGTCTTGCATGTAAGATGTTGTAA 57.836 37.500 28.04 5.61 38.79 2.41
438 439 6.243551 CGTCTTGCATGTAAGATGTTGTAAG 58.756 40.000 28.04 11.66 38.79 2.34
439 440 6.024049 GTCTTGCATGTAAGATGTTGTAAGC 58.976 40.000 26.01 8.92 38.79 3.09
440 441 4.963276 TGCATGTAAGATGTTGTAAGCC 57.037 40.909 0.00 0.00 0.00 4.35
441 442 4.331108 TGCATGTAAGATGTTGTAAGCCA 58.669 39.130 0.00 0.00 0.00 4.75
442 443 4.155826 TGCATGTAAGATGTTGTAAGCCAC 59.844 41.667 0.00 0.00 0.00 5.01
443 444 4.396166 GCATGTAAGATGTTGTAAGCCACT 59.604 41.667 0.00 0.00 0.00 4.00
444 445 5.674569 GCATGTAAGATGTTGTAAGCCACTG 60.675 44.000 0.00 0.00 0.00 3.66
445 446 3.751175 TGTAAGATGTTGTAAGCCACTGC 59.249 43.478 0.00 0.00 37.95 4.40
459 460 4.503741 GCCACTGCTTTGACTAATGAAA 57.496 40.909 0.00 0.00 33.53 2.69
460 461 4.229876 GCCACTGCTTTGACTAATGAAAC 58.770 43.478 0.00 0.00 33.53 2.78
461 462 4.261572 GCCACTGCTTTGACTAATGAAACA 60.262 41.667 0.00 0.00 33.53 2.83
462 463 5.565439 GCCACTGCTTTGACTAATGAAACAT 60.565 40.000 0.00 0.00 33.53 2.71
463 464 6.449698 CCACTGCTTTGACTAATGAAACATT 58.550 36.000 0.00 0.00 0.00 2.71
464 465 6.925165 CCACTGCTTTGACTAATGAAACATTT 59.075 34.615 2.40 0.00 0.00 2.32
465 466 8.081633 CCACTGCTTTGACTAATGAAACATTTA 58.918 33.333 2.40 0.00 0.00 1.40
466 467 9.121517 CACTGCTTTGACTAATGAAACATTTAG 57.878 33.333 2.40 0.00 0.00 1.85
467 468 7.809806 ACTGCTTTGACTAATGAAACATTTAGC 59.190 33.333 2.40 0.00 0.00 3.09
468 469 7.885297 TGCTTTGACTAATGAAACATTTAGCT 58.115 30.769 2.40 0.00 0.00 3.32
469 470 8.023128 TGCTTTGACTAATGAAACATTTAGCTC 58.977 33.333 0.00 0.00 0.00 4.09
470 471 8.239998 GCTTTGACTAATGAAACATTTAGCTCT 58.760 33.333 0.00 0.00 0.00 4.09
473 474 8.846943 TGACTAATGAAACATTTAGCTCTTCA 57.153 30.769 0.00 0.00 0.00 3.02
474 475 9.453572 TGACTAATGAAACATTTAGCTCTTCAT 57.546 29.630 0.00 0.00 38.14 2.57
697 721 1.305381 CACCGAACCCTCCTCCTCT 60.305 63.158 0.00 0.00 0.00 3.69
708 732 2.348998 CTCCTCTGCCGCCACTTT 59.651 61.111 0.00 0.00 0.00 2.66
793 839 4.367023 TCCCCGCCGTTCGTCTTG 62.367 66.667 0.00 0.00 36.19 3.02
1061 1325 3.897122 ACCACCACCCAACGCCAT 61.897 61.111 0.00 0.00 0.00 4.40
1646 1983 1.664321 GGTGACCGCTATGGAGACGT 61.664 60.000 0.00 0.00 42.00 4.34
2219 2818 7.364970 AGTTTAATTTCTGTTCGGCGTTTTAT 58.635 30.769 6.85 0.00 0.00 1.40
2221 2820 8.782327 GTTTAATTTCTGTTCGGCGTTTTATAG 58.218 33.333 6.85 0.00 0.00 1.31
2789 3414 5.245531 GTGAGTTCATCAACACATCCCTAA 58.754 41.667 0.00 0.00 40.43 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.319405 AAACTAGGTTGACGGACCCG 59.681 55.000 6.94 6.94 40.73 5.28
11 12 1.622312 AGAAACTAGGTTGACGGACCC 59.378 52.381 0.00 0.00 40.73 4.46
12 13 2.353505 GGAGAAACTAGGTTGACGGACC 60.354 54.545 0.00 0.00 40.11 4.46
13 14 2.561858 AGGAGAAACTAGGTTGACGGAC 59.438 50.000 0.00 0.00 0.00 4.79
14 15 2.885616 AGGAGAAACTAGGTTGACGGA 58.114 47.619 0.00 0.00 0.00 4.69
15 16 3.679824 AAGGAGAAACTAGGTTGACGG 57.320 47.619 0.00 0.00 0.00 4.79
16 17 4.686554 CAGAAAGGAGAAACTAGGTTGACG 59.313 45.833 0.00 0.00 0.00 4.35
17 18 4.998033 CCAGAAAGGAGAAACTAGGTTGAC 59.002 45.833 0.00 0.00 41.22 3.18
18 19 4.658901 ACCAGAAAGGAGAAACTAGGTTGA 59.341 41.667 0.00 0.00 41.22 3.18
19 20 4.974399 ACCAGAAAGGAGAAACTAGGTTG 58.026 43.478 0.00 0.00 41.22 3.77
20 21 5.648330 AACCAGAAAGGAGAAACTAGGTT 57.352 39.130 0.00 0.00 41.22 3.50
21 22 5.377478 CAAACCAGAAAGGAGAAACTAGGT 58.623 41.667 0.00 0.00 41.22 3.08
22 23 4.762251 CCAAACCAGAAAGGAGAAACTAGG 59.238 45.833 0.00 0.00 41.22 3.02
23 24 4.762251 CCCAAACCAGAAAGGAGAAACTAG 59.238 45.833 0.00 0.00 41.22 2.57
24 25 4.447180 CCCCAAACCAGAAAGGAGAAACTA 60.447 45.833 0.00 0.00 41.22 2.24
25 26 3.566351 CCCAAACCAGAAAGGAGAAACT 58.434 45.455 0.00 0.00 41.22 2.66
26 27 2.628178 CCCCAAACCAGAAAGGAGAAAC 59.372 50.000 0.00 0.00 41.22 2.78
27 28 2.246327 ACCCCAAACCAGAAAGGAGAAA 59.754 45.455 0.00 0.00 41.22 2.52
28 29 1.856920 ACCCCAAACCAGAAAGGAGAA 59.143 47.619 0.00 0.00 41.22 2.87
29 30 1.423921 GACCCCAAACCAGAAAGGAGA 59.576 52.381 0.00 0.00 41.22 3.71
30 31 1.425448 AGACCCCAAACCAGAAAGGAG 59.575 52.381 0.00 0.00 41.22 3.69
31 32 1.529744 AGACCCCAAACCAGAAAGGA 58.470 50.000 0.00 0.00 41.22 3.36
32 33 2.158460 AGAAGACCCCAAACCAGAAAGG 60.158 50.000 0.00 0.00 45.67 3.11
33 34 3.229697 AGAAGACCCCAAACCAGAAAG 57.770 47.619 0.00 0.00 0.00 2.62
34 35 3.680777 AAGAAGACCCCAAACCAGAAA 57.319 42.857 0.00 0.00 0.00 2.52
35 36 3.204382 AGAAAGAAGACCCCAAACCAGAA 59.796 43.478 0.00 0.00 0.00 3.02
36 37 2.783510 AGAAAGAAGACCCCAAACCAGA 59.216 45.455 0.00 0.00 0.00 3.86
37 38 3.229697 AGAAAGAAGACCCCAAACCAG 57.770 47.619 0.00 0.00 0.00 4.00
38 39 3.680777 AAGAAAGAAGACCCCAAACCA 57.319 42.857 0.00 0.00 0.00 3.67
39 40 3.704566 ACAAAGAAAGAAGACCCCAAACC 59.295 43.478 0.00 0.00 0.00 3.27
40 41 6.459670 TTACAAAGAAAGAAGACCCCAAAC 57.540 37.500 0.00 0.00 0.00 2.93
41 42 8.770010 TTATTACAAAGAAAGAAGACCCCAAA 57.230 30.769 0.00 0.00 0.00 3.28
42 43 8.002459 ACTTATTACAAAGAAAGAAGACCCCAA 58.998 33.333 0.00 0.00 31.31 4.12
43 44 7.523415 ACTTATTACAAAGAAAGAAGACCCCA 58.477 34.615 0.00 0.00 31.31 4.96
44 45 7.997773 ACTTATTACAAAGAAAGAAGACCCC 57.002 36.000 0.00 0.00 31.31 4.95
45 46 9.722184 AGTACTTATTACAAAGAAAGAAGACCC 57.278 33.333 0.00 0.00 31.31 4.46
52 53 9.298774 CGGAGGTAGTACTTATTACAAAGAAAG 57.701 37.037 0.00 0.00 32.41 2.62
53 54 8.806146 ACGGAGGTAGTACTTATTACAAAGAAA 58.194 33.333 0.00 0.00 32.41 2.52
54 55 8.353423 ACGGAGGTAGTACTTATTACAAAGAA 57.647 34.615 0.00 0.00 32.41 2.52
55 56 7.067494 GGACGGAGGTAGTACTTATTACAAAGA 59.933 40.741 0.00 0.00 32.41 2.52
56 57 7.199078 GGACGGAGGTAGTACTTATTACAAAG 58.801 42.308 0.00 0.00 32.41 2.77
57 58 6.183360 CGGACGGAGGTAGTACTTATTACAAA 60.183 42.308 0.00 0.00 32.41 2.83
58 59 5.296780 CGGACGGAGGTAGTACTTATTACAA 59.703 44.000 0.00 0.00 32.41 2.41
59 60 4.816385 CGGACGGAGGTAGTACTTATTACA 59.184 45.833 0.00 0.00 32.41 2.41
60 61 4.214332 CCGGACGGAGGTAGTACTTATTAC 59.786 50.000 4.40 0.00 37.50 1.89
61 62 4.389374 CCGGACGGAGGTAGTACTTATTA 58.611 47.826 4.40 0.00 37.50 0.98
62 63 3.217626 CCGGACGGAGGTAGTACTTATT 58.782 50.000 4.40 0.00 37.50 1.40
63 64 2.487986 CCCGGACGGAGGTAGTACTTAT 60.488 54.545 13.13 0.00 37.50 1.73
64 65 1.134098 CCCGGACGGAGGTAGTACTTA 60.134 57.143 13.13 0.00 37.50 2.24
65 66 0.394899 CCCGGACGGAGGTAGTACTT 60.395 60.000 13.13 0.00 37.50 2.24
66 67 1.225704 CCCGGACGGAGGTAGTACT 59.774 63.158 13.13 0.00 37.50 2.73
67 68 0.681243 AACCCGGACGGAGGTAGTAC 60.681 60.000 13.13 0.00 34.45 2.73
68 69 0.039618 AAACCCGGACGGAGGTAGTA 59.960 55.000 13.13 0.00 34.45 1.82
69 70 0.039618 TAAACCCGGACGGAGGTAGT 59.960 55.000 13.13 0.00 34.45 2.73
70 71 0.743097 CTAAACCCGGACGGAGGTAG 59.257 60.000 13.13 6.28 34.45 3.18
71 72 0.331278 TCTAAACCCGGACGGAGGTA 59.669 55.000 13.13 0.12 34.45 3.08
72 73 0.969409 CTCTAAACCCGGACGGAGGT 60.969 60.000 13.13 0.00 38.27 3.85
73 74 1.673808 CCTCTAAACCCGGACGGAGG 61.674 65.000 13.13 8.71 37.50 4.30
74 75 0.969409 ACCTCTAAACCCGGACGGAG 60.969 60.000 13.13 5.04 37.50 4.63
75 76 0.967380 GACCTCTAAACCCGGACGGA 60.967 60.000 13.13 0.00 37.50 4.69
76 77 1.514553 GACCTCTAAACCCGGACGG 59.485 63.158 0.73 3.25 37.81 4.79
77 78 1.514553 GGACCTCTAAACCCGGACG 59.485 63.158 0.73 0.00 0.00 4.79
78 79 1.514553 CGGACCTCTAAACCCGGAC 59.485 63.158 0.73 0.00 38.42 4.79
79 80 2.353610 GCGGACCTCTAAACCCGGA 61.354 63.158 0.73 0.00 42.02 5.14
80 81 2.186125 GCGGACCTCTAAACCCGG 59.814 66.667 0.00 0.00 42.02 5.73
81 82 2.186125 GGCGGACCTCTAAACCCG 59.814 66.667 0.00 0.00 44.34 5.28
82 83 2.588439 GGGCGGACCTCTAAACCC 59.412 66.667 0.00 0.00 35.85 4.11
83 84 2.186125 CGGGCGGACCTCTAAACC 59.814 66.667 0.00 0.00 36.97 3.27
84 85 1.153686 GTCGGGCGGACCTCTAAAC 60.154 63.158 13.71 0.00 39.90 2.01
85 86 3.291611 GTCGGGCGGACCTCTAAA 58.708 61.111 13.71 0.00 39.90 1.85
92 93 2.592287 TGTTTTGGTCGGGCGGAC 60.592 61.111 16.08 16.08 45.31 4.79
93 94 2.592287 GTGTTTTGGTCGGGCGGA 60.592 61.111 0.00 0.00 0.00 5.54
94 95 3.666253 GGTGTTTTGGTCGGGCGG 61.666 66.667 0.00 0.00 0.00 6.13
95 96 4.020378 CGGTGTTTTGGTCGGGCG 62.020 66.667 0.00 0.00 0.00 6.13
96 97 3.666253 CCGGTGTTTTGGTCGGGC 61.666 66.667 0.00 0.00 38.93 6.13
97 98 1.071128 TACCGGTGTTTTGGTCGGG 59.929 57.895 19.93 0.00 45.97 5.14
98 99 1.229975 GGTACCGGTGTTTTGGTCGG 61.230 60.000 19.93 0.00 46.95 4.79
99 100 0.532417 TGGTACCGGTGTTTTGGTCG 60.532 55.000 19.93 0.00 39.70 4.79
100 101 1.605232 CTTGGTACCGGTGTTTTGGTC 59.395 52.381 19.93 0.00 39.70 4.02
101 102 1.682740 CTTGGTACCGGTGTTTTGGT 58.317 50.000 19.93 0.00 42.34 3.67
102 103 0.955905 CCTTGGTACCGGTGTTTTGG 59.044 55.000 19.93 10.33 0.00 3.28
103 104 1.682740 ACCTTGGTACCGGTGTTTTG 58.317 50.000 19.93 4.50 29.94 2.44
104 105 2.172293 TGTACCTTGGTACCGGTGTTTT 59.828 45.455 19.93 0.00 33.28 2.43
105 106 1.767681 TGTACCTTGGTACCGGTGTTT 59.232 47.619 19.93 0.00 33.28 2.83
106 107 1.422531 TGTACCTTGGTACCGGTGTT 58.577 50.000 19.93 0.00 33.28 3.32
107 108 1.070601 GTTGTACCTTGGTACCGGTGT 59.929 52.381 19.93 7.91 33.28 4.16
108 109 1.070445 TGTTGTACCTTGGTACCGGTG 59.930 52.381 19.93 0.55 33.28 4.94
109 110 1.422531 TGTTGTACCTTGGTACCGGT 58.577 50.000 22.64 13.98 35.36 5.28
110 111 2.773993 ATGTTGTACCTTGGTACCGG 57.226 50.000 22.64 0.00 0.00 5.28
111 112 4.392754 GGTTAATGTTGTACCTTGGTACCG 59.607 45.833 22.64 0.00 0.00 4.02
112 113 4.701651 GGGTTAATGTTGTACCTTGGTACC 59.298 45.833 22.64 4.43 32.46 3.34
113 114 4.701651 GGGGTTAATGTTGTACCTTGGTAC 59.298 45.833 19.83 19.83 32.46 3.34
114 115 4.602732 AGGGGTTAATGTTGTACCTTGGTA 59.397 41.667 0.00 0.00 32.46 3.25
115 116 3.399983 AGGGGTTAATGTTGTACCTTGGT 59.600 43.478 0.00 0.00 32.46 3.67
116 117 3.761752 CAGGGGTTAATGTTGTACCTTGG 59.238 47.826 0.00 0.00 32.46 3.61
117 118 4.403734 ACAGGGGTTAATGTTGTACCTTG 58.596 43.478 0.00 0.00 32.46 3.61
118 119 4.734843 ACAGGGGTTAATGTTGTACCTT 57.265 40.909 0.00 0.00 32.46 3.50
119 120 4.734843 AACAGGGGTTAATGTTGTACCT 57.265 40.909 0.00 0.00 38.19 3.08
120 121 4.828387 TGAAACAGGGGTTAATGTTGTACC 59.172 41.667 0.00 0.00 39.50 3.34
121 122 5.278610 GGTGAAACAGGGGTTAATGTTGTAC 60.279 44.000 0.00 0.00 39.50 2.90
122 123 4.828387 GGTGAAACAGGGGTTAATGTTGTA 59.172 41.667 0.00 0.00 39.50 2.41
123 124 3.639561 GGTGAAACAGGGGTTAATGTTGT 59.360 43.478 0.00 0.00 39.50 3.32
124 125 3.895041 AGGTGAAACAGGGGTTAATGTTG 59.105 43.478 0.00 0.00 39.50 3.33
125 126 4.149598 GAGGTGAAACAGGGGTTAATGTT 58.850 43.478 0.00 0.00 41.28 2.71
126 127 3.763057 GAGGTGAAACAGGGGTTAATGT 58.237 45.455 0.00 0.00 39.98 2.71
127 128 2.747446 CGAGGTGAAACAGGGGTTAATG 59.253 50.000 0.00 0.00 39.98 1.90
128 129 2.878526 GCGAGGTGAAACAGGGGTTAAT 60.879 50.000 0.00 0.00 39.98 1.40
129 130 1.543871 GCGAGGTGAAACAGGGGTTAA 60.544 52.381 0.00 0.00 39.98 2.01
130 131 0.035739 GCGAGGTGAAACAGGGGTTA 59.964 55.000 0.00 0.00 39.98 2.85
131 132 1.228154 GCGAGGTGAAACAGGGGTT 60.228 57.895 0.00 0.00 39.98 4.11
132 133 1.779061 ATGCGAGGTGAAACAGGGGT 61.779 55.000 0.00 0.00 39.98 4.95
133 134 1.002134 ATGCGAGGTGAAACAGGGG 60.002 57.895 0.00 0.00 39.98 4.79
134 135 1.926511 GCATGCGAGGTGAAACAGGG 61.927 60.000 0.00 0.00 39.98 4.45
135 136 1.236616 TGCATGCGAGGTGAAACAGG 61.237 55.000 14.09 0.00 39.98 4.00
136 137 0.806868 ATGCATGCGAGGTGAAACAG 59.193 50.000 14.09 0.00 39.98 3.16
137 138 0.522626 CATGCATGCGAGGTGAAACA 59.477 50.000 14.93 0.00 39.98 2.83
138 139 0.799534 GCATGCATGCGAGGTGAAAC 60.800 55.000 33.99 6.88 44.67 2.78
139 140 1.507630 GCATGCATGCGAGGTGAAA 59.492 52.632 33.99 0.00 44.67 2.69
140 141 3.189921 GCATGCATGCGAGGTGAA 58.810 55.556 33.99 0.00 44.67 3.18
164 165 1.733389 CGGCCTGCATGCTTTGTAAAG 60.733 52.381 20.33 5.57 39.03 1.85
165 166 0.243365 CGGCCTGCATGCTTTGTAAA 59.757 50.000 20.33 0.00 0.00 2.01
166 167 0.893270 ACGGCCTGCATGCTTTGTAA 60.893 50.000 20.33 0.00 0.00 2.41
167 168 1.303236 ACGGCCTGCATGCTTTGTA 60.303 52.632 20.33 0.00 0.00 2.41
168 169 2.598394 ACGGCCTGCATGCTTTGT 60.598 55.556 20.33 7.48 0.00 2.83
169 170 2.126228 CACGGCCTGCATGCTTTG 60.126 61.111 20.33 8.24 0.00 2.77
170 171 2.282391 TCACGGCCTGCATGCTTT 60.282 55.556 20.33 0.00 0.00 3.51
171 172 3.058160 GTCACGGCCTGCATGCTT 61.058 61.111 20.33 0.00 0.00 3.91
174 175 4.720902 TGGGTCACGGCCTGCATG 62.721 66.667 0.00 0.00 0.00 4.06
175 176 3.965258 TTGGGTCACGGCCTGCAT 61.965 61.111 0.00 0.00 0.00 3.96
176 177 4.947147 GTTGGGTCACGGCCTGCA 62.947 66.667 0.00 0.00 0.00 4.41
178 179 3.783362 TTGGTTGGGTCACGGCCTG 62.783 63.158 0.00 0.00 0.00 4.85
179 180 2.976494 CTTTGGTTGGGTCACGGCCT 62.976 60.000 0.00 0.00 0.00 5.19
180 181 2.519780 TTTGGTTGGGTCACGGCC 60.520 61.111 0.00 0.00 0.00 6.13
181 182 1.515521 CTCTTTGGTTGGGTCACGGC 61.516 60.000 0.00 0.00 0.00 5.68
182 183 0.179029 ACTCTTTGGTTGGGTCACGG 60.179 55.000 0.00 0.00 0.00 4.94
183 184 1.226746 GACTCTTTGGTTGGGTCACG 58.773 55.000 0.00 0.00 0.00 4.35
184 185 1.226746 CGACTCTTTGGTTGGGTCAC 58.773 55.000 0.00 0.00 0.00 3.67
185 186 0.534203 GCGACTCTTTGGTTGGGTCA 60.534 55.000 0.00 0.00 0.00 4.02
186 187 0.250338 AGCGACTCTTTGGTTGGGTC 60.250 55.000 0.00 0.00 0.00 4.46
187 188 0.250338 GAGCGACTCTTTGGTTGGGT 60.250 55.000 0.00 0.00 0.00 4.51
188 189 0.035458 AGAGCGACTCTTTGGTTGGG 59.965 55.000 3.88 0.00 37.60 4.12
189 190 1.433534 GAGAGCGACTCTTTGGTTGG 58.566 55.000 10.12 0.00 41.35 3.77
198 199 1.558741 CATGCAAGAGAGAGCGACTC 58.441 55.000 0.00 5.96 45.22 3.36
199 200 0.459934 GCATGCAAGAGAGAGCGACT 60.460 55.000 14.21 0.00 0.00 4.18
200 201 2.005220 GCATGCAAGAGAGAGCGAC 58.995 57.895 14.21 0.00 0.00 5.19
201 202 4.509756 GCATGCAAGAGAGAGCGA 57.490 55.556 14.21 0.00 0.00 4.93
202 203 3.004283 CGCATGCAAGAGAGAGCG 58.996 61.111 19.57 0.00 39.17 5.03
203 204 1.207390 CTACGCATGCAAGAGAGAGC 58.793 55.000 19.57 0.00 0.00 4.09
204 205 1.537776 CCCTACGCATGCAAGAGAGAG 60.538 57.143 19.57 0.50 0.00 3.20
205 206 0.461548 CCCTACGCATGCAAGAGAGA 59.538 55.000 19.57 0.00 0.00 3.10
206 207 1.156645 GCCCTACGCATGCAAGAGAG 61.157 60.000 19.57 6.42 37.47 3.20
207 208 1.153369 GCCCTACGCATGCAAGAGA 60.153 57.895 19.57 0.00 37.47 3.10
208 209 2.182842 GGCCCTACGCATGCAAGAG 61.183 63.158 19.57 10.80 40.31 2.85
209 210 2.124736 GGCCCTACGCATGCAAGA 60.125 61.111 19.57 0.31 40.31 3.02
210 211 3.576356 CGGCCCTACGCATGCAAG 61.576 66.667 19.57 13.96 40.31 4.01
218 219 1.883084 GAACAGATGCGGCCCTACG 60.883 63.158 0.00 0.00 0.00 3.51
219 220 1.883084 CGAACAGATGCGGCCCTAC 60.883 63.158 0.00 0.00 0.00 3.18
220 221 2.499205 CGAACAGATGCGGCCCTA 59.501 61.111 0.00 0.00 0.00 3.53
223 224 3.869272 CAGCGAACAGATGCGGCC 61.869 66.667 0.00 0.00 35.87 6.13
224 225 3.869272 CCAGCGAACAGATGCGGC 61.869 66.667 0.00 0.00 34.32 6.53
225 226 3.869272 GCCAGCGAACAGATGCGG 61.869 66.667 0.00 0.00 34.32 5.69
226 227 2.816958 AGCCAGCGAACAGATGCG 60.817 61.111 0.00 0.00 34.32 4.73
227 228 1.580845 AACAGCCAGCGAACAGATGC 61.581 55.000 0.00 0.00 34.32 3.91
228 229 0.167470 CAACAGCCAGCGAACAGATG 59.833 55.000 0.00 0.00 35.69 2.90
229 230 0.250467 ACAACAGCCAGCGAACAGAT 60.250 50.000 0.00 0.00 0.00 2.90
230 231 0.391228 TACAACAGCCAGCGAACAGA 59.609 50.000 0.00 0.00 0.00 3.41
231 232 0.792640 CTACAACAGCCAGCGAACAG 59.207 55.000 0.00 0.00 0.00 3.16
232 233 0.105964 ACTACAACAGCCAGCGAACA 59.894 50.000 0.00 0.00 0.00 3.18
233 234 1.226746 AACTACAACAGCCAGCGAAC 58.773 50.000 0.00 0.00 0.00 3.95
234 235 2.823924 TAACTACAACAGCCAGCGAA 57.176 45.000 0.00 0.00 0.00 4.70
235 236 2.823924 TTAACTACAACAGCCAGCGA 57.176 45.000 0.00 0.00 0.00 4.93
236 237 3.435327 TCATTTAACTACAACAGCCAGCG 59.565 43.478 0.00 0.00 0.00 5.18
237 238 5.567138 ATCATTTAACTACAACAGCCAGC 57.433 39.130 0.00 0.00 0.00 4.85
238 239 5.727791 GCGATCATTTAACTACAACAGCCAG 60.728 44.000 0.00 0.00 0.00 4.85
239 240 4.094294 GCGATCATTTAACTACAACAGCCA 59.906 41.667 0.00 0.00 0.00 4.75
240 241 4.094294 TGCGATCATTTAACTACAACAGCC 59.906 41.667 0.00 0.00 0.00 4.85
241 242 5.063438 TCTGCGATCATTTAACTACAACAGC 59.937 40.000 0.00 0.00 0.00 4.40
242 243 6.531594 TCTCTGCGATCATTTAACTACAACAG 59.468 38.462 0.00 0.00 0.00 3.16
243 244 6.394809 TCTCTGCGATCATTTAACTACAACA 58.605 36.000 0.00 0.00 0.00 3.33
244 245 6.752351 TCTCTCTGCGATCATTTAACTACAAC 59.248 38.462 0.00 0.00 0.00 3.32
245 246 6.752351 GTCTCTCTGCGATCATTTAACTACAA 59.248 38.462 0.00 0.00 0.00 2.41
246 247 6.266323 GTCTCTCTGCGATCATTTAACTACA 58.734 40.000 0.00 0.00 0.00 2.74
247 248 5.396947 CGTCTCTCTGCGATCATTTAACTAC 59.603 44.000 0.00 0.00 0.00 2.73
248 249 5.511571 CGTCTCTCTGCGATCATTTAACTA 58.488 41.667 0.00 0.00 0.00 2.24
249 250 4.355437 CGTCTCTCTGCGATCATTTAACT 58.645 43.478 0.00 0.00 0.00 2.24
250 251 3.060873 GCGTCTCTCTGCGATCATTTAAC 60.061 47.826 0.00 0.00 0.00 2.01
251 252 3.116300 GCGTCTCTCTGCGATCATTTAA 58.884 45.455 0.00 0.00 0.00 1.52
252 253 2.099098 TGCGTCTCTCTGCGATCATTTA 59.901 45.455 0.00 0.00 0.00 1.40
253 254 1.134995 TGCGTCTCTCTGCGATCATTT 60.135 47.619 0.00 0.00 0.00 2.32
254 255 0.457443 TGCGTCTCTCTGCGATCATT 59.543 50.000 0.00 0.00 0.00 2.57
255 256 0.248825 GTGCGTCTCTCTGCGATCAT 60.249 55.000 0.00 0.00 0.00 2.45
256 257 1.137614 GTGCGTCTCTCTGCGATCA 59.862 57.895 0.00 0.00 0.00 2.92
257 258 0.658368 TAGTGCGTCTCTCTGCGATC 59.342 55.000 0.00 0.00 0.00 3.69
258 259 1.095600 TTAGTGCGTCTCTCTGCGAT 58.904 50.000 0.00 0.00 0.00 4.58
259 260 1.095600 ATTAGTGCGTCTCTCTGCGA 58.904 50.000 0.00 0.00 0.00 5.10
260 261 1.195347 CATTAGTGCGTCTCTCTGCG 58.805 55.000 0.00 0.00 0.00 5.18
261 262 0.926846 GCATTAGTGCGTCTCTCTGC 59.073 55.000 0.00 0.00 42.28 4.26
272 273 6.567050 AGAACAAATTAGCCATGCATTAGTG 58.433 36.000 0.00 0.00 0.00 2.74
273 274 6.780457 AGAACAAATTAGCCATGCATTAGT 57.220 33.333 0.00 0.00 0.00 2.24
274 275 7.934457 AGTAGAACAAATTAGCCATGCATTAG 58.066 34.615 0.00 0.00 0.00 1.73
275 276 7.880160 AGTAGAACAAATTAGCCATGCATTA 57.120 32.000 0.00 0.00 0.00 1.90
276 277 6.780457 AGTAGAACAAATTAGCCATGCATT 57.220 33.333 0.00 0.00 0.00 3.56
277 278 6.780457 AAGTAGAACAAATTAGCCATGCAT 57.220 33.333 0.00 0.00 0.00 3.96
278 279 6.588719 AAAGTAGAACAAATTAGCCATGCA 57.411 33.333 0.00 0.00 0.00 3.96
279 280 7.622048 GCAAAAAGTAGAACAAATTAGCCATGC 60.622 37.037 0.00 0.00 0.00 4.06
280 281 7.384660 TGCAAAAAGTAGAACAAATTAGCCATG 59.615 33.333 0.00 0.00 0.00 3.66
281 282 7.441017 TGCAAAAAGTAGAACAAATTAGCCAT 58.559 30.769 0.00 0.00 0.00 4.40
282 283 6.810911 TGCAAAAAGTAGAACAAATTAGCCA 58.189 32.000 0.00 0.00 0.00 4.75
283 284 6.923508 ACTGCAAAAAGTAGAACAAATTAGCC 59.076 34.615 0.00 0.00 33.69 3.93
284 285 7.567590 GCACTGCAAAAAGTAGAACAAATTAGC 60.568 37.037 0.00 0.00 33.69 3.09
285 286 7.357532 CGCACTGCAAAAAGTAGAACAAATTAG 60.358 37.037 1.11 0.00 33.69 1.73
286 287 6.416455 CGCACTGCAAAAAGTAGAACAAATTA 59.584 34.615 1.11 0.00 33.69 1.40
287 288 5.231991 CGCACTGCAAAAAGTAGAACAAATT 59.768 36.000 1.11 0.00 33.69 1.82
288 289 4.739716 CGCACTGCAAAAAGTAGAACAAAT 59.260 37.500 1.11 0.00 33.69 2.32
289 290 4.101942 CGCACTGCAAAAAGTAGAACAAA 58.898 39.130 1.11 0.00 33.69 2.83
290 291 3.375610 TCGCACTGCAAAAAGTAGAACAA 59.624 39.130 1.11 0.00 33.69 2.83
291 292 2.939756 TCGCACTGCAAAAAGTAGAACA 59.060 40.909 1.11 0.00 33.69 3.18
292 293 3.602390 TCGCACTGCAAAAAGTAGAAC 57.398 42.857 1.11 0.00 33.69 3.01
293 294 5.933187 TTATCGCACTGCAAAAAGTAGAA 57.067 34.783 1.11 0.00 33.69 2.10
294 295 5.106712 CCTTTATCGCACTGCAAAAAGTAGA 60.107 40.000 14.14 0.00 33.69 2.59
295 296 5.088739 CCTTTATCGCACTGCAAAAAGTAG 58.911 41.667 14.14 0.00 35.87 2.57
296 297 4.614993 GCCTTTATCGCACTGCAAAAAGTA 60.615 41.667 14.14 0.00 0.00 2.24
297 298 3.857010 GCCTTTATCGCACTGCAAAAAGT 60.857 43.478 14.14 0.00 0.00 2.66
298 299 2.663119 GCCTTTATCGCACTGCAAAAAG 59.337 45.455 1.11 7.18 0.00 2.27
299 300 2.035193 TGCCTTTATCGCACTGCAAAAA 59.965 40.909 1.11 0.00 0.00 1.94
300 301 1.611006 TGCCTTTATCGCACTGCAAAA 59.389 42.857 1.11 0.00 0.00 2.44
301 302 1.199789 CTGCCTTTATCGCACTGCAAA 59.800 47.619 1.11 0.00 31.61 3.68
302 303 0.804364 CTGCCTTTATCGCACTGCAA 59.196 50.000 1.11 0.00 31.61 4.08
303 304 1.647545 GCTGCCTTTATCGCACTGCA 61.648 55.000 1.11 0.00 30.20 4.41
304 305 1.063166 GCTGCCTTTATCGCACTGC 59.937 57.895 0.00 0.00 31.61 4.40
305 306 1.349627 CGCTGCCTTTATCGCACTG 59.650 57.895 0.00 0.00 31.61 3.66
306 307 1.815421 CCGCTGCCTTTATCGCACT 60.815 57.895 0.00 0.00 31.61 4.40
307 308 2.709475 CCGCTGCCTTTATCGCAC 59.291 61.111 0.00 0.00 31.61 5.34
308 309 3.202001 GCCGCTGCCTTTATCGCA 61.202 61.111 0.00 0.00 34.41 5.10
318 319 2.785258 CGTTTAGAAGGCCGCTGC 59.215 61.111 10.95 0.00 0.00 5.25
319 320 2.785258 GCGTTTAGAAGGCCGCTG 59.215 61.111 10.95 0.00 42.66 5.18
320 321 2.216750 TACGCGTTTAGAAGGCCGCT 62.217 55.000 20.78 0.93 43.70 5.52
321 322 1.806758 TACGCGTTTAGAAGGCCGC 60.807 57.895 20.78 0.00 42.53 6.53
322 323 1.736249 CGTACGCGTTTAGAAGGCCG 61.736 60.000 20.78 2.40 38.99 6.13
323 324 1.993706 CGTACGCGTTTAGAAGGCC 59.006 57.895 20.78 0.00 38.99 5.19
324 325 1.342810 GCGTACGCGTTTAGAAGGC 59.657 57.895 26.17 12.92 40.81 4.35
341 342 2.202932 ACTGGACATCGCATCCGC 60.203 61.111 0.00 0.00 39.30 5.54
342 343 1.884464 CCACTGGACATCGCATCCG 60.884 63.158 0.00 0.00 39.30 4.18
343 344 1.524621 CCCACTGGACATCGCATCC 60.525 63.158 0.00 0.00 36.70 3.51
344 345 2.182842 GCCCACTGGACATCGCATC 61.183 63.158 0.00 0.00 0.00 3.91
345 346 2.124570 GCCCACTGGACATCGCAT 60.125 61.111 0.00 0.00 0.00 4.73
346 347 2.803155 GAAGCCCACTGGACATCGCA 62.803 60.000 0.00 0.00 0.00 5.10
347 348 2.045926 AAGCCCACTGGACATCGC 60.046 61.111 0.00 0.00 0.00 4.58
348 349 0.824109 TAGAAGCCCACTGGACATCG 59.176 55.000 0.00 0.00 0.00 3.84
349 350 3.471680 GATTAGAAGCCCACTGGACATC 58.528 50.000 0.00 0.00 0.00 3.06
350 351 2.173569 GGATTAGAAGCCCACTGGACAT 59.826 50.000 0.00 0.00 0.00 3.06
351 352 1.559682 GGATTAGAAGCCCACTGGACA 59.440 52.381 0.00 0.00 0.00 4.02
352 353 1.473434 CGGATTAGAAGCCCACTGGAC 60.473 57.143 0.00 0.00 0.00 4.02
353 354 0.830648 CGGATTAGAAGCCCACTGGA 59.169 55.000 0.00 0.00 0.00 3.86
354 355 0.179045 CCGGATTAGAAGCCCACTGG 60.179 60.000 0.00 0.00 0.00 4.00
355 356 0.179045 CCCGGATTAGAAGCCCACTG 60.179 60.000 0.73 0.00 0.00 3.66
356 357 0.326238 TCCCGGATTAGAAGCCCACT 60.326 55.000 0.73 0.00 0.00 4.00
357 358 0.179054 GTCCCGGATTAGAAGCCCAC 60.179 60.000 0.73 0.00 0.00 4.61
358 359 1.682451 CGTCCCGGATTAGAAGCCCA 61.682 60.000 0.73 0.00 0.00 5.36
359 360 1.069258 CGTCCCGGATTAGAAGCCC 59.931 63.158 0.73 0.00 0.00 5.19
360 361 4.752514 CGTCCCGGATTAGAAGCC 57.247 61.111 0.73 0.00 0.00 4.35
371 372 1.236628 CAGATACTACCTCCGTCCCG 58.763 60.000 0.00 0.00 0.00 5.14
372 373 1.618487 CCAGATACTACCTCCGTCCC 58.382 60.000 0.00 0.00 0.00 4.46
373 374 0.960286 GCCAGATACTACCTCCGTCC 59.040 60.000 0.00 0.00 0.00 4.79
374 375 1.984066 AGCCAGATACTACCTCCGTC 58.016 55.000 0.00 0.00 0.00 4.79
375 376 3.074094 TCATAGCCAGATACTACCTCCGT 59.926 47.826 0.00 0.00 0.00 4.69
376 377 3.687125 TCATAGCCAGATACTACCTCCG 58.313 50.000 0.00 0.00 0.00 4.63
377 378 6.613153 AAATCATAGCCAGATACTACCTCC 57.387 41.667 0.00 0.00 0.00 4.30
378 379 8.150945 TGAAAAATCATAGCCAGATACTACCTC 58.849 37.037 0.00 0.00 0.00 3.85
379 380 8.034313 TGAAAAATCATAGCCAGATACTACCT 57.966 34.615 0.00 0.00 0.00 3.08
380 381 8.854614 ATGAAAAATCATAGCCAGATACTACC 57.145 34.615 0.00 0.00 0.00 3.18
383 384 9.638176 AGAAATGAAAAATCATAGCCAGATACT 57.362 29.630 0.00 0.00 0.00 2.12
386 387 8.419442 GGAAGAAATGAAAAATCATAGCCAGAT 58.581 33.333 0.00 0.00 0.00 2.90
387 388 7.396907 TGGAAGAAATGAAAAATCATAGCCAGA 59.603 33.333 0.00 0.00 0.00 3.86
388 389 7.490402 GTGGAAGAAATGAAAAATCATAGCCAG 59.510 37.037 0.00 0.00 0.00 4.85
389 390 7.322664 GTGGAAGAAATGAAAAATCATAGCCA 58.677 34.615 0.00 0.00 0.00 4.75
390 391 6.473455 CGTGGAAGAAATGAAAAATCATAGCC 59.527 38.462 0.00 0.00 0.00 3.93
391 392 7.029563 ACGTGGAAGAAATGAAAAATCATAGC 58.970 34.615 0.00 0.00 0.00 2.97
392 393 8.454106 AGACGTGGAAGAAATGAAAAATCATAG 58.546 33.333 0.00 0.00 0.00 2.23
393 394 8.335532 AGACGTGGAAGAAATGAAAAATCATA 57.664 30.769 0.00 0.00 0.00 2.15
394 395 7.219484 AGACGTGGAAGAAATGAAAAATCAT 57.781 32.000 0.00 0.00 0.00 2.45
395 396 6.633500 AGACGTGGAAGAAATGAAAAATCA 57.367 33.333 0.00 0.00 0.00 2.57
396 397 6.129088 GCAAGACGTGGAAGAAATGAAAAATC 60.129 38.462 0.00 0.00 0.00 2.17
397 398 5.691754 GCAAGACGTGGAAGAAATGAAAAAT 59.308 36.000 0.00 0.00 0.00 1.82
398 399 5.040635 GCAAGACGTGGAAGAAATGAAAAA 58.959 37.500 0.00 0.00 0.00 1.94
399 400 4.097135 TGCAAGACGTGGAAGAAATGAAAA 59.903 37.500 0.00 0.00 0.00 2.29
400 401 3.629855 TGCAAGACGTGGAAGAAATGAAA 59.370 39.130 0.00 0.00 0.00 2.69
401 402 3.210227 TGCAAGACGTGGAAGAAATGAA 58.790 40.909 0.00 0.00 0.00 2.57
402 403 2.844946 TGCAAGACGTGGAAGAAATGA 58.155 42.857 0.00 0.00 0.00 2.57
403 404 3.058016 ACATGCAAGACGTGGAAGAAATG 60.058 43.478 0.00 0.00 39.81 2.32
404 405 3.149196 ACATGCAAGACGTGGAAGAAAT 58.851 40.909 0.00 0.00 39.81 2.17
405 406 2.571212 ACATGCAAGACGTGGAAGAAA 58.429 42.857 0.00 0.00 39.81 2.52
406 407 2.254546 ACATGCAAGACGTGGAAGAA 57.745 45.000 0.00 0.00 39.81 2.52
407 408 3.394674 TTACATGCAAGACGTGGAAGA 57.605 42.857 0.00 0.00 39.81 2.87
409 410 3.394674 TCTTACATGCAAGACGTGGAA 57.605 42.857 4.15 0.00 39.81 3.53
410 411 3.261580 CATCTTACATGCAAGACGTGGA 58.738 45.455 10.61 0.00 39.81 4.02
411 412 3.002791 ACATCTTACATGCAAGACGTGG 58.997 45.455 10.61 4.19 39.81 4.94
412 413 4.083855 ACAACATCTTACATGCAAGACGTG 60.084 41.667 10.61 8.80 37.37 4.49
413 414 4.065088 ACAACATCTTACATGCAAGACGT 58.935 39.130 10.61 6.04 37.37 4.34
414 415 4.668576 ACAACATCTTACATGCAAGACG 57.331 40.909 10.61 5.35 37.37 4.18
415 416 6.024049 GCTTACAACATCTTACATGCAAGAC 58.976 40.000 10.61 0.00 37.37 3.01
416 417 5.123820 GGCTTACAACATCTTACATGCAAGA 59.876 40.000 10.79 10.79 38.84 3.02
417 418 5.106197 TGGCTTACAACATCTTACATGCAAG 60.106 40.000 0.00 0.00 0.00 4.01
418 419 4.764308 TGGCTTACAACATCTTACATGCAA 59.236 37.500 0.00 0.00 0.00 4.08
419 420 4.155826 GTGGCTTACAACATCTTACATGCA 59.844 41.667 0.00 0.00 0.00 3.96
420 421 4.396166 AGTGGCTTACAACATCTTACATGC 59.604 41.667 0.00 0.00 0.00 4.06
421 422 5.674569 GCAGTGGCTTACAACATCTTACATG 60.675 44.000 0.00 0.00 36.96 3.21
422 423 4.396166 GCAGTGGCTTACAACATCTTACAT 59.604 41.667 0.00 0.00 36.96 2.29
423 424 3.751175 GCAGTGGCTTACAACATCTTACA 59.249 43.478 0.00 0.00 36.96 2.41
424 425 4.342352 GCAGTGGCTTACAACATCTTAC 57.658 45.455 0.00 0.00 36.96 2.34
438 439 4.229876 GTTTCATTAGTCAAAGCAGTGGC 58.770 43.478 0.00 0.00 41.61 5.01
439 440 5.437289 TGTTTCATTAGTCAAAGCAGTGG 57.563 39.130 0.00 0.00 0.00 4.00
440 441 7.935338 AAATGTTTCATTAGTCAAAGCAGTG 57.065 32.000 0.00 0.00 0.00 3.66
441 442 7.809806 GCTAAATGTTTCATTAGTCAAAGCAGT 59.190 33.333 0.00 0.00 32.82 4.40
442 443 8.025445 AGCTAAATGTTTCATTAGTCAAAGCAG 58.975 33.333 0.00 0.00 32.82 4.24
443 444 7.885297 AGCTAAATGTTTCATTAGTCAAAGCA 58.115 30.769 0.00 0.00 32.82 3.91
444 445 8.239998 AGAGCTAAATGTTTCATTAGTCAAAGC 58.760 33.333 0.00 0.00 32.82 3.51
447 448 9.283768 TGAAGAGCTAAATGTTTCATTAGTCAA 57.716 29.630 0.00 0.00 32.82 3.18
448 449 8.846943 TGAAGAGCTAAATGTTTCATTAGTCA 57.153 30.769 0.00 0.00 32.82 3.41
455 456 9.283768 TCTAACAATGAAGAGCTAAATGTTTCA 57.716 29.630 0.00 0.00 32.39 2.69
459 460 9.050601 GCTATCTAACAATGAAGAGCTAAATGT 57.949 33.333 0.00 0.00 0.00 2.71
460 461 8.219769 CGCTATCTAACAATGAAGAGCTAAATG 58.780 37.037 0.00 0.00 0.00 2.32
461 462 7.928706 ACGCTATCTAACAATGAAGAGCTAAAT 59.071 33.333 0.00 0.00 0.00 1.40
462 463 7.265673 ACGCTATCTAACAATGAAGAGCTAAA 58.734 34.615 0.00 0.00 0.00 1.85
463 464 6.806751 ACGCTATCTAACAATGAAGAGCTAA 58.193 36.000 0.00 0.00 0.00 3.09
464 465 6.392625 ACGCTATCTAACAATGAAGAGCTA 57.607 37.500 0.00 0.00 0.00 3.32
465 466 5.269505 ACGCTATCTAACAATGAAGAGCT 57.730 39.130 0.00 0.00 0.00 4.09
466 467 6.642950 ACATACGCTATCTAACAATGAAGAGC 59.357 38.462 0.00 0.00 0.00 4.09
467 468 9.847706 ATACATACGCTATCTAACAATGAAGAG 57.152 33.333 0.00 0.00 0.00 2.85
470 471 9.758651 ACAATACATACGCTATCTAACAATGAA 57.241 29.630 0.00 0.00 0.00 2.57
1061 1325 3.319405 GTCAAGCTCGAGATATTGGGAGA 59.681 47.826 18.75 0.00 0.00 3.71
1646 1983 4.920112 CACGGCCACGGTCACCAA 62.920 66.667 2.24 0.00 46.48 3.67
2219 2818 5.648960 TCAATTGAGCATGCATTGTCTTCTA 59.351 36.000 21.98 3.93 0.00 2.10
2221 2820 4.740268 TCAATTGAGCATGCATTGTCTTC 58.260 39.130 21.98 7.20 0.00 2.87
2408 3023 0.808060 GAAAGAGAGTGCGCTAGGGC 60.808 60.000 23.93 23.93 0.00 5.19
2789 3414 2.548920 CGTTTGAGGAGAAGAAGGTGCT 60.549 50.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.