Multiple sequence alignment - TraesCS2B01G099100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G099100 chr2B 100.000 2760 0 0 1 2760 58772406 58775165 0.000000e+00 5097.0
1 TraesCS2B01G099100 chr2B 89.002 491 34 7 817 1292 58689240 58689725 8.510000e-165 590.0
2 TraesCS2B01G099100 chr2B 93.979 382 19 2 1000 1378 58791523 58791903 2.380000e-160 575.0
3 TraesCS2B01G099100 chr2B 88.785 428 25 6 379 801 58688846 58689255 1.140000e-138 503.0
4 TraesCS2B01G099100 chr2B 88.729 417 34 5 1398 1807 58689798 58690208 5.310000e-137 497.0
5 TraesCS2B01G099100 chr2B 86.017 472 33 14 837 1279 58826027 58826494 2.490000e-130 475.0
6 TraesCS2B01G099100 chr2B 86.087 345 36 8 1406 1749 58826584 58826917 7.270000e-96 361.0
7 TraesCS2B01G099100 chr2B 85.470 351 35 10 2413 2754 58692368 58692711 4.370000e-93 351.0
8 TraesCS2B01G099100 chr2B 84.979 233 30 3 2530 2757 58792611 58792843 5.940000e-57 231.0
9 TraesCS2B01G099100 chr2B 88.776 98 8 3 824 921 58791295 58791389 1.740000e-22 117.0
10 TraesCS2B01G099100 chr2A 92.334 587 31 4 1836 2416 38755785 38756363 0.000000e+00 822.0
11 TraesCS2B01G099100 chr2A 81.263 934 94 38 824 1722 38908440 38909327 0.000000e+00 680.0
12 TraesCS2B01G099100 chr2A 96.842 380 8 1 1428 1807 38755413 38755788 1.390000e-177 632.0
13 TraesCS2B01G099100 chr2A 90.546 476 39 3 817 1286 38811969 38812444 2.330000e-175 625.0
14 TraesCS2B01G099100 chr2A 89.362 470 30 9 817 1286 38754877 38755326 8.570000e-160 573.0
15 TraesCS2B01G099100 chr2A 93.732 351 18 3 2413 2760 38757971 38758320 8.760000e-145 523.0
16 TraesCS2B01G099100 chr2A 86.335 322 34 7 2433 2746 38814411 38814730 2.630000e-90 342.0
17 TraesCS2B01G099100 chr2A 90.043 231 19 2 512 741 38754552 38754779 2.080000e-76 296.0
18 TraesCS2B01G099100 chr2A 88.745 231 18 4 516 741 38811644 38811871 2.710000e-70 276.0
19 TraesCS2B01G099100 chr2A 85.124 121 10 2 616 731 38908244 38908361 1.740000e-22 117.0
20 TraesCS2B01G099100 chr2D 89.157 581 36 13 817 1378 35531657 35532229 0.000000e+00 699.0
21 TraesCS2B01G099100 chr2D 89.336 422 31 6 1393 1807 35532214 35532628 4.070000e-143 518.0
22 TraesCS2B01G099100 chr2D 94.362 337 15 2 1000 1333 35564377 35564712 5.270000e-142 514.0
23 TraesCS2B01G099100 chr2D 87.915 422 36 9 1393 1807 42075288 42074875 1.490000e-132 483.0
24 TraesCS2B01G099100 chr2D 89.071 366 32 6 379 741 35531199 35531559 5.420000e-122 448.0
25 TraesCS2B01G099100 chr2D 85.682 440 43 8 2333 2753 35534573 35535011 1.950000e-121 446.0
26 TraesCS2B01G099100 chr2D 84.910 391 40 10 1422 1806 35564740 35565117 7.220000e-101 377.0
27 TraesCS2B01G099100 chr2D 84.576 389 36 13 1000 1378 35677850 35678224 5.620000e-97 364.0
28 TraesCS2B01G099100 chr2D 86.217 341 41 4 1425 1762 35678238 35678575 5.620000e-97 364.0
29 TraesCS2B01G099100 chr2D 89.547 287 22 3 1000 1285 35639076 35639355 9.400000e-95 357.0
30 TraesCS2B01G099100 chr2D 85.152 330 39 5 1397 1722 35639426 35639749 2.050000e-86 329.0
31 TraesCS2B01G099100 chr2D 86.986 292 25 7 455 743 42092199 42091918 1.600000e-82 316.0
32 TraesCS2B01G099100 chr2D 87.676 284 18 8 2465 2737 42064691 42064414 5.740000e-82 315.0
33 TraesCS2B01G099100 chr2D 90.857 175 11 4 880 1049 42090292 42090118 2.140000e-56 230.0
34 TraesCS2B01G099100 chr2D 93.220 118 7 1 1 117 308315489 308315606 3.650000e-39 172.0
35 TraesCS2B01G099100 chr2D 92.437 119 8 1 1840 1958 35532625 35532742 4.730000e-38 169.0
36 TraesCS2B01G099100 chr2D 87.162 148 19 0 2599 2746 35668315 35668462 4.730000e-38 169.0
37 TraesCS2B01G099100 chr2D 85.000 160 22 2 2175 2332 35534318 35534477 7.910000e-36 161.0
38 TraesCS2B01G099100 chr5B 94.828 116 5 1 3 117 366732098 366732213 2.180000e-41 180.0
39 TraesCS2B01G099100 chr5B 93.220 118 7 1 1 117 422239981 422239864 3.650000e-39 172.0
40 TraesCS2B01G099100 chr5B 83.810 105 12 5 2001 2104 394742280 394742380 8.140000e-16 95.3
41 TraesCS2B01G099100 chr5B 79.310 87 11 7 416 497 43928045 43927961 1.000000e-03 54.7
42 TraesCS2B01G099100 chr7D 94.068 118 6 1 1 117 140708736 140708853 7.850000e-41 178.0
43 TraesCS2B01G099100 chr7D 93.220 118 7 1 1 117 372262433 372262550 3.650000e-39 172.0
44 TraesCS2B01G099100 chr7D 93.220 118 7 1 1 117 428384224 428384107 3.650000e-39 172.0
45 TraesCS2B01G099100 chr4A 93.220 118 7 1 1 117 324362902 324363019 3.650000e-39 172.0
46 TraesCS2B01G099100 chr1B 93.220 118 7 1 1 117 172910003 172910120 3.650000e-39 172.0
47 TraesCS2B01G099100 chr1A 93.220 118 7 1 1 117 466734903 466735020 3.650000e-39 172.0
48 TraesCS2B01G099100 chr4B 95.588 68 3 0 2001 2068 545450195 545450128 2.910000e-20 110.0
49 TraesCS2B01G099100 chr4B 95.000 40 2 0 413 452 2211770 2211731 2.290000e-06 63.9
50 TraesCS2B01G099100 chr4B 95.000 40 2 0 413 452 2241743 2241704 2.290000e-06 63.9
51 TraesCS2B01G099100 chr7B 86.275 102 11 2 2001 2099 202770620 202770519 1.050000e-19 108.0
52 TraesCS2B01G099100 chr7B 96.875 32 1 0 415 446 724956375 724956406 1.000000e-03 54.7
53 TraesCS2B01G099100 chr6D 92.958 71 5 0 2001 2071 331257301 331257231 1.350000e-18 104.0
54 TraesCS2B01G099100 chr6D 92.647 68 5 0 2001 2068 336516206 336516273 6.290000e-17 99.0
55 TraesCS2B01G099100 chr5A 94.030 67 4 0 2002 2068 381758824 381758758 4.860000e-18 102.0
56 TraesCS2B01G099100 chr7A 92.754 69 5 0 2000 2068 260000914 260000982 1.750000e-17 100.0
57 TraesCS2B01G099100 chr7A 93.478 46 2 1 406 451 425789704 425789748 1.770000e-07 67.6
58 TraesCS2B01G099100 chr3A 92.754 69 5 0 2000 2068 61433037 61433105 1.750000e-17 100.0
59 TraesCS2B01G099100 chr3A 94.737 38 2 0 415 452 581608131 581608168 2.970000e-05 60.2
60 TraesCS2B01G099100 chr3D 91.549 71 6 0 2001 2071 565200162 565200092 6.290000e-17 99.0
61 TraesCS2B01G099100 chr3D 91.549 71 6 0 2001 2071 565203662 565203592 6.290000e-17 99.0
62 TraesCS2B01G099100 chr3D 92.683 41 2 1 405 444 608489869 608489909 1.070000e-04 58.4
63 TraesCS2B01G099100 chr6B 95.122 41 2 0 412 452 458576503 458576543 6.380000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G099100 chr2B 58772406 58775165 2759 False 5097.000000 5097 100.000000 1 2760 1 chr2B.!!$F1 2759
1 TraesCS2B01G099100 chr2B 58688846 58692711 3865 False 485.250000 590 87.996500 379 2754 4 chr2B.!!$F2 2375
2 TraesCS2B01G099100 chr2B 58826027 58826917 890 False 418.000000 475 86.052000 837 1749 2 chr2B.!!$F4 912
3 TraesCS2B01G099100 chr2B 58791295 58792843 1548 False 307.666667 575 89.244667 824 2757 3 chr2B.!!$F3 1933
4 TraesCS2B01G099100 chr2A 38754552 38758320 3768 False 569.200000 822 92.462600 512 2760 5 chr2A.!!$F1 2248
5 TraesCS2B01G099100 chr2A 38811644 38814730 3086 False 414.333333 625 88.542000 516 2746 3 chr2A.!!$F2 2230
6 TraesCS2B01G099100 chr2A 38908244 38909327 1083 False 398.500000 680 83.193500 616 1722 2 chr2A.!!$F3 1106
7 TraesCS2B01G099100 chr2D 35564377 35565117 740 False 445.500000 514 89.636000 1000 1806 2 chr2D.!!$F4 806
8 TraesCS2B01G099100 chr2D 35531199 35535011 3812 False 406.833333 699 88.447167 379 2753 6 chr2D.!!$F3 2374
9 TraesCS2B01G099100 chr2D 35677850 35678575 725 False 364.000000 364 85.396500 1000 1762 2 chr2D.!!$F6 762
10 TraesCS2B01G099100 chr2D 35639076 35639749 673 False 343.000000 357 87.349500 1000 1722 2 chr2D.!!$F5 722
11 TraesCS2B01G099100 chr2D 42090118 42092199 2081 True 273.000000 316 88.921500 455 1049 2 chr2D.!!$R3 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.033601 AGAGAGCGAGACATCCCTGT 60.034 55.0 0.0 0.0 38.67 4.00 F
247 248 0.033699 ATCTCCTTCTTTGCAGGGGC 60.034 55.0 0.0 0.0 41.68 5.80 F
1357 3026 0.037326 CTTGCCCTGTTCGCTCTGTA 60.037 55.0 0.0 0.0 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1420 3105 0.037697 TTACCTCTGCACGAACGCAT 60.038 50.0 0.0 0.0 42.06 4.73 R
1454 3139 1.398958 ATCCTCTCCTGCTTCCTCGC 61.399 60.0 0.0 0.0 0.00 5.03 R
2417 9514 0.179065 TCATCGCCTCATCTTGCCAG 60.179 55.0 0.0 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.682465 GGTAAAGGAAGTAATGAAGATAAGGTT 57.318 33.333 0.00 0.00 0.00 3.50
29 30 9.807921 AAAGGAAGTAATGAAGATAAGGTTCAA 57.192 29.630 0.00 0.00 37.46 2.69
30 31 9.454859 AAGGAAGTAATGAAGATAAGGTTCAAG 57.545 33.333 0.00 0.00 37.46 3.02
31 32 8.826765 AGGAAGTAATGAAGATAAGGTTCAAGA 58.173 33.333 0.00 0.00 37.46 3.02
32 33 9.103861 GGAAGTAATGAAGATAAGGTTCAAGAG 57.896 37.037 0.00 0.00 37.46 2.85
33 34 9.877178 GAAGTAATGAAGATAAGGTTCAAGAGA 57.123 33.333 0.00 0.00 37.46 3.10
34 35 9.883142 AAGTAATGAAGATAAGGTTCAAGAGAG 57.117 33.333 0.00 0.00 37.46 3.20
35 36 7.984617 AGTAATGAAGATAAGGTTCAAGAGAGC 59.015 37.037 0.00 0.00 37.46 4.09
36 37 4.748892 TGAAGATAAGGTTCAAGAGAGCG 58.251 43.478 0.00 0.00 30.89 5.03
37 38 4.462834 TGAAGATAAGGTTCAAGAGAGCGA 59.537 41.667 0.00 0.00 30.89 4.93
38 39 4.647424 AGATAAGGTTCAAGAGAGCGAG 57.353 45.455 0.00 0.00 0.00 5.03
39 40 4.274147 AGATAAGGTTCAAGAGAGCGAGA 58.726 43.478 0.00 0.00 0.00 4.04
40 41 2.734276 AAGGTTCAAGAGAGCGAGAC 57.266 50.000 0.00 0.00 0.00 3.36
41 42 1.621992 AGGTTCAAGAGAGCGAGACA 58.378 50.000 0.00 0.00 0.00 3.41
42 43 2.175202 AGGTTCAAGAGAGCGAGACAT 58.825 47.619 0.00 0.00 0.00 3.06
43 44 2.165437 AGGTTCAAGAGAGCGAGACATC 59.835 50.000 0.00 0.00 0.00 3.06
44 45 2.535331 GTTCAAGAGAGCGAGACATCC 58.465 52.381 0.00 0.00 0.00 3.51
45 46 1.107114 TCAAGAGAGCGAGACATCCC 58.893 55.000 0.00 0.00 0.00 3.85
46 47 1.110442 CAAGAGAGCGAGACATCCCT 58.890 55.000 0.00 0.00 0.00 4.20
47 48 1.110442 AAGAGAGCGAGACATCCCTG 58.890 55.000 0.00 0.00 0.00 4.45
48 49 0.033601 AGAGAGCGAGACATCCCTGT 60.034 55.000 0.00 0.00 38.67 4.00
49 50 0.820871 GAGAGCGAGACATCCCTGTT 59.179 55.000 0.00 0.00 35.14 3.16
50 51 0.534412 AGAGCGAGACATCCCTGTTG 59.466 55.000 0.00 0.00 35.14 3.33
51 52 0.460987 GAGCGAGACATCCCTGTTGG 60.461 60.000 0.00 0.00 35.14 3.77
52 53 1.194781 AGCGAGACATCCCTGTTGGT 61.195 55.000 0.00 0.00 35.14 3.67
53 54 0.741221 GCGAGACATCCCTGTTGGTC 60.741 60.000 0.00 0.00 35.14 4.02
54 55 0.898320 CGAGACATCCCTGTTGGTCT 59.102 55.000 0.00 0.00 42.90 3.85
55 56 1.276421 CGAGACATCCCTGTTGGTCTT 59.724 52.381 0.00 0.00 40.48 3.01
56 57 2.675317 CGAGACATCCCTGTTGGTCTTC 60.675 54.545 0.00 0.00 40.48 2.87
57 58 2.303022 GAGACATCCCTGTTGGTCTTCA 59.697 50.000 0.00 0.00 40.48 3.02
58 59 2.711009 AGACATCCCTGTTGGTCTTCAA 59.289 45.455 0.00 0.00 37.31 2.69
59 60 3.077359 GACATCCCTGTTGGTCTTCAAG 58.923 50.000 0.00 0.00 35.14 3.02
60 61 2.711009 ACATCCCTGTTGGTCTTCAAGA 59.289 45.455 0.00 0.00 35.80 3.02
61 62 3.138283 ACATCCCTGTTGGTCTTCAAGAA 59.862 43.478 0.00 0.00 35.80 2.52
62 63 3.943671 TCCCTGTTGGTCTTCAAGAAA 57.056 42.857 0.00 0.00 35.80 2.52
63 64 3.820557 TCCCTGTTGGTCTTCAAGAAAG 58.179 45.455 0.00 0.00 35.80 2.62
64 65 2.294512 CCCTGTTGGTCTTCAAGAAAGC 59.705 50.000 0.00 0.00 35.80 3.51
65 66 3.217626 CCTGTTGGTCTTCAAGAAAGCT 58.782 45.455 0.00 0.00 35.80 3.74
66 67 3.004106 CCTGTTGGTCTTCAAGAAAGCTG 59.996 47.826 0.00 0.00 35.80 4.24
67 68 3.879295 CTGTTGGTCTTCAAGAAAGCTGA 59.121 43.478 0.00 0.00 35.80 4.26
68 69 4.269183 TGTTGGTCTTCAAGAAAGCTGAA 58.731 39.130 0.00 0.00 35.80 3.02
69 70 4.704540 TGTTGGTCTTCAAGAAAGCTGAAA 59.295 37.500 0.00 0.00 35.80 2.69
70 71 5.184864 TGTTGGTCTTCAAGAAAGCTGAAAA 59.815 36.000 0.00 0.00 35.80 2.29
71 72 5.913137 TGGTCTTCAAGAAAGCTGAAAAA 57.087 34.783 0.00 0.00 34.76 1.94
93 94 8.563289 AAAAACTATCTCGACGATAATGAGAC 57.437 34.615 0.00 0.00 41.21 3.36
94 95 6.862711 AACTATCTCGACGATAATGAGACA 57.137 37.500 0.00 0.00 41.21 3.41
95 96 6.862711 ACTATCTCGACGATAATGAGACAA 57.137 37.500 0.00 0.00 41.21 3.18
96 97 6.660722 ACTATCTCGACGATAATGAGACAAC 58.339 40.000 0.00 0.00 41.21 3.32
97 98 4.288670 TCTCGACGATAATGAGACAACC 57.711 45.455 0.00 0.00 34.00 3.77
98 99 3.066342 TCTCGACGATAATGAGACAACCC 59.934 47.826 0.00 0.00 34.00 4.11
99 100 2.756207 TCGACGATAATGAGACAACCCA 59.244 45.455 0.00 0.00 0.00 4.51
100 101 3.193903 TCGACGATAATGAGACAACCCAA 59.806 43.478 0.00 0.00 0.00 4.12
101 102 3.930229 CGACGATAATGAGACAACCCAAA 59.070 43.478 0.00 0.00 0.00 3.28
102 103 4.390603 CGACGATAATGAGACAACCCAAAA 59.609 41.667 0.00 0.00 0.00 2.44
103 104 5.445939 CGACGATAATGAGACAACCCAAAAG 60.446 44.000 0.00 0.00 0.00 2.27
104 105 5.313712 ACGATAATGAGACAACCCAAAAGT 58.686 37.500 0.00 0.00 0.00 2.66
105 106 5.411669 ACGATAATGAGACAACCCAAAAGTC 59.588 40.000 0.00 0.00 0.00 3.01
106 107 5.411361 CGATAATGAGACAACCCAAAAGTCA 59.589 40.000 0.00 0.00 34.80 3.41
107 108 6.094048 CGATAATGAGACAACCCAAAAGTCAT 59.906 38.462 0.00 0.00 34.80 3.06
108 109 5.458041 AATGAGACAACCCAAAAGTCATG 57.542 39.130 0.00 0.00 34.80 3.07
109 110 3.897239 TGAGACAACCCAAAAGTCATGT 58.103 40.909 0.00 0.00 34.80 3.21
110 111 3.882888 TGAGACAACCCAAAAGTCATGTC 59.117 43.478 0.00 0.00 37.91 3.06
111 112 4.170468 AGACAACCCAAAAGTCATGTCT 57.830 40.909 0.66 0.66 41.80 3.41
112 113 4.536765 AGACAACCCAAAAGTCATGTCTT 58.463 39.130 0.00 0.00 43.50 3.01
113 114 4.339247 AGACAACCCAAAAGTCATGTCTTG 59.661 41.667 5.96 0.00 43.50 3.02
114 115 4.277476 ACAACCCAAAAGTCATGTCTTGA 58.723 39.130 5.96 0.00 0.00 3.02
115 116 4.895297 ACAACCCAAAAGTCATGTCTTGAT 59.105 37.500 5.96 0.00 36.54 2.57
116 117 5.221303 ACAACCCAAAAGTCATGTCTTGATG 60.221 40.000 5.96 8.42 36.54 3.07
117 118 3.256631 ACCCAAAAGTCATGTCTTGATGC 59.743 43.478 5.96 0.00 36.54 3.91
118 119 3.367703 CCCAAAAGTCATGTCTTGATGCC 60.368 47.826 5.96 0.00 36.54 4.40
119 120 3.495193 CAAAAGTCATGTCTTGATGCCG 58.505 45.455 5.96 0.00 36.54 5.69
120 121 1.089920 AAGTCATGTCTTGATGCCGC 58.910 50.000 4.32 0.00 36.54 6.53
121 122 0.036105 AGTCATGTCTTGATGCCGCA 60.036 50.000 0.00 0.00 36.54 5.69
122 123 0.097674 GTCATGTCTTGATGCCGCAC 59.902 55.000 0.00 0.00 36.54 5.34
123 124 1.061411 CATGTCTTGATGCCGCACG 59.939 57.895 0.00 0.00 0.00 5.34
124 125 1.375908 ATGTCTTGATGCCGCACGT 60.376 52.632 0.00 0.00 0.00 4.49
125 126 1.361668 ATGTCTTGATGCCGCACGTC 61.362 55.000 0.00 0.00 34.62 4.34
126 127 1.738099 GTCTTGATGCCGCACGTCT 60.738 57.895 0.00 0.00 35.15 4.18
127 128 1.005037 TCTTGATGCCGCACGTCTT 60.005 52.632 0.00 0.00 35.15 3.01
128 129 0.602638 TCTTGATGCCGCACGTCTTT 60.603 50.000 0.00 0.00 35.15 2.52
129 130 0.238289 CTTGATGCCGCACGTCTTTT 59.762 50.000 0.00 0.00 35.15 2.27
130 131 0.237235 TTGATGCCGCACGTCTTTTC 59.763 50.000 0.00 0.00 35.15 2.29
131 132 0.602638 TGATGCCGCACGTCTTTTCT 60.603 50.000 0.00 0.00 35.15 2.52
132 133 0.179215 GATGCCGCACGTCTTTTCTG 60.179 55.000 0.00 0.00 0.00 3.02
133 134 1.577328 ATGCCGCACGTCTTTTCTGG 61.577 55.000 0.00 0.00 0.00 3.86
134 135 1.959226 GCCGCACGTCTTTTCTGGA 60.959 57.895 0.00 0.00 0.00 3.86
135 136 1.901650 GCCGCACGTCTTTTCTGGAG 61.902 60.000 0.00 0.00 0.00 3.86
136 137 1.291877 CCGCACGTCTTTTCTGGAGG 61.292 60.000 0.00 0.00 0.00 4.30
137 138 1.869690 GCACGTCTTTTCTGGAGGC 59.130 57.895 0.00 0.00 0.00 4.70
138 139 0.603975 GCACGTCTTTTCTGGAGGCT 60.604 55.000 0.00 0.00 0.00 4.58
139 140 1.337823 GCACGTCTTTTCTGGAGGCTA 60.338 52.381 0.00 0.00 0.00 3.93
140 141 2.678190 GCACGTCTTTTCTGGAGGCTAT 60.678 50.000 0.00 0.00 0.00 2.97
141 142 3.600388 CACGTCTTTTCTGGAGGCTATT 58.400 45.455 0.00 0.00 0.00 1.73
142 143 4.003648 CACGTCTTTTCTGGAGGCTATTT 58.996 43.478 0.00 0.00 0.00 1.40
143 144 4.003648 ACGTCTTTTCTGGAGGCTATTTG 58.996 43.478 0.00 0.00 0.00 2.32
144 145 4.253685 CGTCTTTTCTGGAGGCTATTTGA 58.746 43.478 0.00 0.00 0.00 2.69
145 146 4.695455 CGTCTTTTCTGGAGGCTATTTGAA 59.305 41.667 0.00 0.00 0.00 2.69
146 147 5.355350 CGTCTTTTCTGGAGGCTATTTGAAT 59.645 40.000 0.00 0.00 0.00 2.57
147 148 6.127897 CGTCTTTTCTGGAGGCTATTTGAATT 60.128 38.462 0.00 0.00 0.00 2.17
148 149 7.575720 CGTCTTTTCTGGAGGCTATTTGAATTT 60.576 37.037 0.00 0.00 0.00 1.82
149 150 7.757173 GTCTTTTCTGGAGGCTATTTGAATTTC 59.243 37.037 0.00 0.00 0.00 2.17
150 151 7.671398 TCTTTTCTGGAGGCTATTTGAATTTCT 59.329 33.333 0.00 0.00 0.00 2.52
151 152 7.781324 TTTCTGGAGGCTATTTGAATTTCTT 57.219 32.000 0.00 0.00 0.00 2.52
152 153 7.396540 TTCTGGAGGCTATTTGAATTTCTTC 57.603 36.000 0.00 0.00 0.00 2.87
153 154 6.725364 TCTGGAGGCTATTTGAATTTCTTCT 58.275 36.000 0.00 0.00 32.29 2.85
154 155 6.825721 TCTGGAGGCTATTTGAATTTCTTCTC 59.174 38.462 0.00 0.00 32.29 2.87
155 156 6.725364 TGGAGGCTATTTGAATTTCTTCTCT 58.275 36.000 0.00 0.00 32.29 3.10
156 157 7.177878 TGGAGGCTATTTGAATTTCTTCTCTT 58.822 34.615 0.00 0.00 32.29 2.85
157 158 8.328758 TGGAGGCTATTTGAATTTCTTCTCTTA 58.671 33.333 0.00 0.00 32.29 2.10
158 159 8.616942 GGAGGCTATTTGAATTTCTTCTCTTAC 58.383 37.037 0.00 0.00 32.29 2.34
159 160 8.512966 AGGCTATTTGAATTTCTTCTCTTACC 57.487 34.615 0.00 0.00 32.29 2.85
160 161 8.332487 AGGCTATTTGAATTTCTTCTCTTACCT 58.668 33.333 0.00 0.00 32.29 3.08
161 162 8.961634 GGCTATTTGAATTTCTTCTCTTACCTT 58.038 33.333 0.00 0.00 32.29 3.50
162 163 9.995957 GCTATTTGAATTTCTTCTCTTACCTTC 57.004 33.333 0.00 0.00 32.29 3.46
164 165 8.940397 ATTTGAATTTCTTCTCTTACCTTCCA 57.060 30.769 0.00 0.00 32.29 3.53
165 166 7.986085 TTGAATTTCTTCTCTTACCTTCCAG 57.014 36.000 0.00 0.00 32.29 3.86
166 167 7.079451 TGAATTTCTTCTCTTACCTTCCAGT 57.921 36.000 0.00 0.00 32.29 4.00
167 168 7.518188 TGAATTTCTTCTCTTACCTTCCAGTT 58.482 34.615 0.00 0.00 32.29 3.16
168 169 7.445402 TGAATTTCTTCTCTTACCTTCCAGTTG 59.555 37.037 0.00 0.00 32.29 3.16
169 170 4.891992 TCTTCTCTTACCTTCCAGTTGG 57.108 45.455 0.00 0.00 0.00 3.77
170 171 3.008049 TCTTCTCTTACCTTCCAGTTGGC 59.992 47.826 0.00 0.00 34.44 4.52
171 172 1.628846 TCTCTTACCTTCCAGTTGGCC 59.371 52.381 0.00 0.00 34.44 5.36
172 173 0.323629 TCTTACCTTCCAGTTGGCCG 59.676 55.000 0.00 0.00 34.44 6.13
173 174 1.302993 TTACCTTCCAGTTGGCCGC 60.303 57.895 0.00 0.00 34.44 6.53
174 175 2.058125 TTACCTTCCAGTTGGCCGCA 62.058 55.000 0.00 0.00 34.44 5.69
175 176 1.847798 TACCTTCCAGTTGGCCGCAT 61.848 55.000 0.00 0.00 34.44 4.73
176 177 1.077787 CCTTCCAGTTGGCCGCATA 60.078 57.895 0.00 0.00 34.44 3.14
177 178 1.376609 CCTTCCAGTTGGCCGCATAC 61.377 60.000 0.00 0.00 34.44 2.39
178 179 1.376609 CTTCCAGTTGGCCGCATACC 61.377 60.000 0.00 0.00 34.44 2.73
179 180 1.847798 TTCCAGTTGGCCGCATACCT 61.848 55.000 0.00 0.00 34.44 3.08
180 181 1.378514 CCAGTTGGCCGCATACCTT 60.379 57.895 0.00 0.00 0.00 3.50
181 182 0.965363 CCAGTTGGCCGCATACCTTT 60.965 55.000 0.00 0.00 0.00 3.11
182 183 0.171007 CAGTTGGCCGCATACCTTTG 59.829 55.000 0.00 0.00 0.00 2.77
183 184 0.965363 AGTTGGCCGCATACCTTTGG 60.965 55.000 0.00 0.00 0.00 3.28
184 185 0.963355 GTTGGCCGCATACCTTTGGA 60.963 55.000 0.00 0.00 0.00 3.53
185 186 0.033601 TTGGCCGCATACCTTTGGAT 60.034 50.000 0.00 0.00 0.00 3.41
186 187 0.465460 TGGCCGCATACCTTTGGATC 60.465 55.000 0.00 0.00 0.00 3.36
187 188 1.507141 GGCCGCATACCTTTGGATCG 61.507 60.000 0.00 0.00 0.00 3.69
188 189 0.814010 GCCGCATACCTTTGGATCGT 60.814 55.000 0.00 0.00 0.00 3.73
189 190 1.217882 CCGCATACCTTTGGATCGTC 58.782 55.000 0.00 0.00 0.00 4.20
190 191 1.202533 CCGCATACCTTTGGATCGTCT 60.203 52.381 0.00 0.00 0.00 4.18
191 192 2.550978 CGCATACCTTTGGATCGTCTT 58.449 47.619 0.00 0.00 0.00 3.01
192 193 2.540101 CGCATACCTTTGGATCGTCTTC 59.460 50.000 0.00 0.00 0.00 2.87
193 194 2.872858 GCATACCTTTGGATCGTCTTCC 59.127 50.000 0.00 0.00 36.24 3.46
194 195 3.432326 GCATACCTTTGGATCGTCTTCCT 60.432 47.826 0.00 0.00 36.68 3.36
195 196 4.770795 CATACCTTTGGATCGTCTTCCTT 58.229 43.478 0.00 0.00 36.68 3.36
196 197 5.684030 GCATACCTTTGGATCGTCTTCCTTA 60.684 44.000 0.00 0.00 36.68 2.69
197 198 6.525629 CATACCTTTGGATCGTCTTCCTTAT 58.474 40.000 0.00 0.00 36.68 1.73
198 199 5.437191 ACCTTTGGATCGTCTTCCTTATT 57.563 39.130 0.00 0.00 36.68 1.40
199 200 5.429130 ACCTTTGGATCGTCTTCCTTATTC 58.571 41.667 0.00 0.00 36.68 1.75
200 201 5.189934 ACCTTTGGATCGTCTTCCTTATTCT 59.810 40.000 0.00 0.00 36.68 2.40
201 202 6.383147 ACCTTTGGATCGTCTTCCTTATTCTA 59.617 38.462 0.00 0.00 36.68 2.10
202 203 7.093024 ACCTTTGGATCGTCTTCCTTATTCTAA 60.093 37.037 0.00 0.00 36.68 2.10
203 204 7.934120 CCTTTGGATCGTCTTCCTTATTCTAAT 59.066 37.037 4.04 0.00 36.68 1.73
204 205 8.888579 TTTGGATCGTCTTCCTTATTCTAATC 57.111 34.615 4.04 0.00 36.68 1.75
205 206 6.994221 TGGATCGTCTTCCTTATTCTAATCC 58.006 40.000 0.00 0.00 36.68 3.01
206 207 6.553476 TGGATCGTCTTCCTTATTCTAATCCA 59.447 38.462 0.00 0.00 37.26 3.41
207 208 7.235606 TGGATCGTCTTCCTTATTCTAATCCAT 59.764 37.037 0.00 0.00 35.30 3.41
208 209 7.547370 GGATCGTCTTCCTTATTCTAATCCATG 59.453 40.741 0.00 0.00 32.68 3.66
209 210 7.597288 TCGTCTTCCTTATTCTAATCCATGA 57.403 36.000 0.00 0.00 0.00 3.07
210 211 8.195165 TCGTCTTCCTTATTCTAATCCATGAT 57.805 34.615 0.00 0.00 0.00 2.45
211 212 8.651389 TCGTCTTCCTTATTCTAATCCATGATT 58.349 33.333 0.00 0.00 36.20 2.57
212 213 8.930760 CGTCTTCCTTATTCTAATCCATGATTC 58.069 37.037 0.00 0.00 33.95 2.52
217 218 9.384849 TCCTTATTCTAATCCATGATTCTCTCA 57.615 33.333 0.00 0.00 38.53 3.27
218 219 9.434420 CCTTATTCTAATCCATGATTCTCTCAC 57.566 37.037 0.00 0.00 36.48 3.51
221 222 6.662865 TCTAATCCATGATTCTCTCACTCC 57.337 41.667 0.00 0.00 36.48 3.85
222 223 4.703379 AATCCATGATTCTCTCACTCCC 57.297 45.455 0.00 0.00 36.48 4.30
223 224 3.120468 TCCATGATTCTCTCACTCCCA 57.880 47.619 0.00 0.00 36.48 4.37
224 225 3.036819 TCCATGATTCTCTCACTCCCAG 58.963 50.000 0.00 0.00 36.48 4.45
225 226 2.485124 CCATGATTCTCTCACTCCCAGC 60.485 54.545 0.00 0.00 36.48 4.85
226 227 0.820226 TGATTCTCTCACTCCCAGCG 59.180 55.000 0.00 0.00 0.00 5.18
227 228 0.103937 GATTCTCTCACTCCCAGCGG 59.896 60.000 0.00 0.00 0.00 5.52
228 229 0.324738 ATTCTCTCACTCCCAGCGGA 60.325 55.000 0.00 0.00 36.45 5.54
229 230 0.324738 TTCTCTCACTCCCAGCGGAT 60.325 55.000 0.00 0.00 37.60 4.18
230 231 0.753479 TCTCTCACTCCCAGCGGATC 60.753 60.000 0.00 0.00 37.60 3.36
231 232 0.754957 CTCTCACTCCCAGCGGATCT 60.755 60.000 0.00 0.00 37.60 2.75
232 233 0.753479 TCTCACTCCCAGCGGATCTC 60.753 60.000 0.00 0.00 37.60 2.75
233 234 1.743321 CTCACTCCCAGCGGATCTCC 61.743 65.000 0.00 0.00 37.60 3.71
234 235 1.760086 CACTCCCAGCGGATCTCCT 60.760 63.158 0.00 0.00 37.60 3.69
235 236 1.002274 ACTCCCAGCGGATCTCCTT 59.998 57.895 0.00 0.00 37.60 3.36
236 237 1.045911 ACTCCCAGCGGATCTCCTTC 61.046 60.000 0.00 0.00 37.60 3.46
237 238 0.758685 CTCCCAGCGGATCTCCTTCT 60.759 60.000 0.00 0.00 37.60 2.85
238 239 0.325671 TCCCAGCGGATCTCCTTCTT 60.326 55.000 0.00 0.00 31.13 2.52
239 240 0.543749 CCCAGCGGATCTCCTTCTTT 59.456 55.000 0.00 0.00 0.00 2.52
240 241 1.661341 CCAGCGGATCTCCTTCTTTG 58.339 55.000 0.00 0.00 0.00 2.77
241 242 1.012841 CAGCGGATCTCCTTCTTTGC 58.987 55.000 0.00 0.00 0.00 3.68
242 243 0.615331 AGCGGATCTCCTTCTTTGCA 59.385 50.000 0.00 0.00 0.00 4.08
243 244 1.012841 GCGGATCTCCTTCTTTGCAG 58.987 55.000 0.00 0.00 0.00 4.41
244 245 1.661341 CGGATCTCCTTCTTTGCAGG 58.339 55.000 0.00 0.00 0.00 4.85
245 246 1.745141 CGGATCTCCTTCTTTGCAGGG 60.745 57.143 0.00 0.00 31.50 4.45
246 247 1.409381 GGATCTCCTTCTTTGCAGGGG 60.409 57.143 0.00 0.00 32.33 4.79
247 248 0.033699 ATCTCCTTCTTTGCAGGGGC 60.034 55.000 0.00 0.00 41.68 5.80
261 262 2.348998 GGGCATCCCCGCTCTATG 59.651 66.667 0.00 0.00 42.67 2.23
262 263 2.359230 GGCATCCCCGCTCTATGC 60.359 66.667 0.00 0.00 44.16 3.14
263 264 2.359230 GCATCCCCGCTCTATGCC 60.359 66.667 0.00 0.00 40.06 4.40
264 265 2.047844 CATCCCCGCTCTATGCCG 60.048 66.667 0.00 0.00 38.78 5.69
265 266 2.203640 ATCCCCGCTCTATGCCGA 60.204 61.111 0.00 0.00 38.78 5.54
266 267 1.610673 ATCCCCGCTCTATGCCGAT 60.611 57.895 0.00 0.00 38.78 4.18
267 268 1.608717 ATCCCCGCTCTATGCCGATC 61.609 60.000 0.00 0.00 38.78 3.69
268 269 2.279069 CCCCGCTCTATGCCGATCT 61.279 63.158 0.00 0.00 38.78 2.75
269 270 1.214062 CCCGCTCTATGCCGATCTC 59.786 63.158 0.00 0.00 38.78 2.75
270 271 1.214062 CCGCTCTATGCCGATCTCC 59.786 63.158 0.00 0.00 38.78 3.71
271 272 1.154131 CGCTCTATGCCGATCTCCG 60.154 63.158 0.00 0.00 38.78 4.63
272 273 1.857318 CGCTCTATGCCGATCTCCGT 61.857 60.000 0.00 0.00 38.78 4.69
273 274 0.109504 GCTCTATGCCGATCTCCGTC 60.110 60.000 0.00 0.00 36.31 4.79
274 275 0.167033 CTCTATGCCGATCTCCGTCG 59.833 60.000 0.00 0.00 41.13 5.12
275 276 0.534427 TCTATGCCGATCTCCGTCGT 60.534 55.000 0.00 0.00 39.89 4.34
276 277 0.386100 CTATGCCGATCTCCGTCGTG 60.386 60.000 0.00 0.00 39.89 4.35
277 278 2.402282 TATGCCGATCTCCGTCGTGC 62.402 60.000 0.00 0.00 39.89 5.34
278 279 4.492160 GCCGATCTCCGTCGTGCA 62.492 66.667 0.00 0.00 39.89 4.57
279 280 2.579787 CCGATCTCCGTCGTGCAC 60.580 66.667 6.82 6.82 39.89 4.57
280 281 2.485582 CGATCTCCGTCGTGCACT 59.514 61.111 16.19 0.00 36.88 4.40
281 282 1.583967 CGATCTCCGTCGTGCACTC 60.584 63.158 16.19 7.04 36.88 3.51
282 283 1.803943 GATCTCCGTCGTGCACTCT 59.196 57.895 16.19 0.00 0.00 3.24
283 284 0.524392 GATCTCCGTCGTGCACTCTG 60.524 60.000 16.19 3.66 0.00 3.35
284 285 1.938657 ATCTCCGTCGTGCACTCTGG 61.939 60.000 16.19 13.07 0.00 3.86
285 286 4.357947 TCCGTCGTGCACTCTGGC 62.358 66.667 16.19 0.00 0.00 4.85
286 287 4.363990 CCGTCGTGCACTCTGGCT 62.364 66.667 16.19 0.00 34.04 4.75
287 288 2.807045 CGTCGTGCACTCTGGCTC 60.807 66.667 16.19 0.00 34.04 4.70
288 289 2.433318 GTCGTGCACTCTGGCTCC 60.433 66.667 16.19 0.00 34.04 4.70
289 290 2.917227 TCGTGCACTCTGGCTCCA 60.917 61.111 16.19 0.00 34.04 3.86
290 291 2.031012 CGTGCACTCTGGCTCCAA 59.969 61.111 16.19 0.00 34.04 3.53
291 292 1.597854 CGTGCACTCTGGCTCCAAA 60.598 57.895 16.19 0.00 34.04 3.28
292 293 1.165907 CGTGCACTCTGGCTCCAAAA 61.166 55.000 16.19 0.00 34.04 2.44
293 294 1.032014 GTGCACTCTGGCTCCAAAAA 58.968 50.000 10.32 0.00 34.04 1.94
294 295 1.615392 GTGCACTCTGGCTCCAAAAAT 59.385 47.619 10.32 0.00 34.04 1.82
295 296 1.614903 TGCACTCTGGCTCCAAAAATG 59.385 47.619 0.00 0.00 34.04 2.32
296 297 1.670967 GCACTCTGGCTCCAAAAATGC 60.671 52.381 0.00 0.00 0.00 3.56
297 298 1.067354 CACTCTGGCTCCAAAAATGCC 60.067 52.381 0.00 0.00 46.26 4.40
300 301 2.125552 GGCTCCAAAAATGCCGCC 60.126 61.111 0.00 0.00 37.11 6.13
301 302 2.506881 GCTCCAAAAATGCCGCCG 60.507 61.111 0.00 0.00 0.00 6.46
302 303 2.181525 CTCCAAAAATGCCGCCGG 59.818 61.111 0.00 0.00 0.00 6.13
346 347 4.899239 GCGATCGCCCTGACCTGG 62.899 72.222 29.48 0.00 34.56 4.45
347 348 3.461773 CGATCGCCCTGACCTGGT 61.462 66.667 0.26 0.00 0.00 4.00
348 349 2.501610 GATCGCCCTGACCTGGTC 59.498 66.667 19.96 19.96 0.00 4.02
349 350 2.039624 ATCGCCCTGACCTGGTCT 59.960 61.111 26.03 2.51 33.15 3.85
350 351 2.022240 GATCGCCCTGACCTGGTCTC 62.022 65.000 26.03 10.81 33.15 3.36
351 352 3.775654 CGCCCTGACCTGGTCTCC 61.776 72.222 26.03 11.34 33.15 3.71
352 353 3.775654 GCCCTGACCTGGTCTCCG 61.776 72.222 26.03 14.56 33.15 4.63
353 354 2.283966 CCCTGACCTGGTCTCCGT 60.284 66.667 26.03 0.00 33.15 4.69
354 355 1.000019 CCCTGACCTGGTCTCCGTA 60.000 63.158 26.03 6.04 33.15 4.02
355 356 0.613853 CCCTGACCTGGTCTCCGTAA 60.614 60.000 26.03 5.32 33.15 3.18
356 357 1.263356 CCTGACCTGGTCTCCGTAAA 58.737 55.000 26.03 4.60 33.15 2.01
357 358 1.831736 CCTGACCTGGTCTCCGTAAAT 59.168 52.381 26.03 0.00 33.15 1.40
358 359 2.159085 CCTGACCTGGTCTCCGTAAATC 60.159 54.545 26.03 0.00 33.15 2.17
359 360 2.496070 CTGACCTGGTCTCCGTAAATCA 59.504 50.000 26.03 3.09 33.15 2.57
360 361 2.232941 TGACCTGGTCTCCGTAAATCAC 59.767 50.000 26.03 0.00 33.15 3.06
361 362 5.225327 TGACCTGGTCTCCGTAAATCACG 62.225 52.174 26.03 0.00 40.76 4.35
372 373 4.437858 CGTAAATCACGCAATGACCTAG 57.562 45.455 0.00 0.00 45.03 3.02
373 374 4.109766 CGTAAATCACGCAATGACCTAGA 58.890 43.478 0.00 0.00 45.03 2.43
374 375 4.745125 CGTAAATCACGCAATGACCTAGAT 59.255 41.667 0.00 0.00 45.03 1.98
375 376 5.332581 CGTAAATCACGCAATGACCTAGATG 60.333 44.000 0.00 0.00 45.03 2.90
376 377 4.406648 AATCACGCAATGACCTAGATGA 57.593 40.909 0.00 0.00 41.24 2.92
377 378 3.165058 TCACGCAATGACCTAGATGAC 57.835 47.619 0.00 0.00 29.99 3.06
387 388 7.309012 GCAATGACCTAGATGACAATATGCAAT 60.309 37.037 0.00 0.00 0.00 3.56
436 437 7.979786 AGTACTCCATCCGATCCATATTAAT 57.020 36.000 0.00 0.00 0.00 1.40
446 447 5.062683 CCGATCCATATTAATTGTCGCTGAG 59.937 44.000 0.00 0.00 0.00 3.35
477 478 8.630037 TCTCTAAATCAGCGACAGTTAATATGA 58.370 33.333 0.00 0.00 0.00 2.15
483 485 6.345298 TCAGCGACAGTTAATATGAATTGGA 58.655 36.000 0.76 0.00 0.00 3.53
500 506 9.981460 ATGAATTGGAGGAGTAGTATTTTCTTT 57.019 29.630 0.00 0.00 0.00 2.52
501 507 9.231297 TGAATTGGAGGAGTAGTATTTTCTTTG 57.769 33.333 0.00 0.00 0.00 2.77
553 559 5.007136 GCATAGATTAAACACAGAGACAGGC 59.993 44.000 0.00 0.00 0.00 4.85
554 560 3.944087 AGATTAAACACAGAGACAGGCC 58.056 45.455 0.00 0.00 0.00 5.19
578 588 2.231964 TGAAACGCGTAGACCCAGTATT 59.768 45.455 14.46 0.00 0.00 1.89
580 590 2.288961 ACGCGTAGACCCAGTATTTG 57.711 50.000 11.67 0.00 0.00 2.32
692 708 3.026879 CGCAGAGCATAGTCGCCG 61.027 66.667 0.00 0.00 0.00 6.46
801 876 5.006386 CCTAATCAACAAGCTGACTCCTTT 58.994 41.667 0.00 0.00 0.00 3.11
806 881 3.676291 ACAAGCTGACTCCTTTCTCTC 57.324 47.619 0.00 0.00 0.00 3.20
807 882 2.968574 ACAAGCTGACTCCTTTCTCTCA 59.031 45.455 0.00 0.00 0.00 3.27
808 883 3.389329 ACAAGCTGACTCCTTTCTCTCAA 59.611 43.478 0.00 0.00 0.00 3.02
809 884 4.141620 ACAAGCTGACTCCTTTCTCTCAAA 60.142 41.667 0.00 0.00 0.00 2.69
810 885 4.696479 AGCTGACTCCTTTCTCTCAAAA 57.304 40.909 0.00 0.00 0.00 2.44
811 886 5.041191 AGCTGACTCCTTTCTCTCAAAAA 57.959 39.130 0.00 0.00 0.00 1.94
835 910 5.859205 AAAAACAAGCTGACTCATTCCTT 57.141 34.783 0.00 0.00 0.00 3.36
836 911 5.859205 AAAACAAGCTGACTCATTCCTTT 57.141 34.783 0.00 0.00 0.00 3.11
837 912 5.859205 AAACAAGCTGACTCATTCCTTTT 57.141 34.783 0.00 0.00 0.00 2.27
838 913 5.859205 AACAAGCTGACTCATTCCTTTTT 57.141 34.783 0.00 0.00 0.00 1.94
839 914 5.192327 ACAAGCTGACTCATTCCTTTTTG 57.808 39.130 0.00 0.00 0.00 2.44
840 915 4.889409 ACAAGCTGACTCATTCCTTTTTGA 59.111 37.500 0.00 0.00 0.00 2.69
841 916 5.537674 ACAAGCTGACTCATTCCTTTTTGAT 59.462 36.000 0.00 0.00 0.00 2.57
842 917 5.893897 AGCTGACTCATTCCTTTTTGATC 57.106 39.130 0.00 0.00 0.00 2.92
843 918 5.319453 AGCTGACTCATTCCTTTTTGATCA 58.681 37.500 0.00 0.00 0.00 2.92
844 919 5.950549 AGCTGACTCATTCCTTTTTGATCAT 59.049 36.000 0.00 0.00 0.00 2.45
848 923 6.600822 TGACTCATTCCTTTTTGATCATCTCC 59.399 38.462 0.00 0.00 0.00 3.71
922 2478 0.040351 CACACTCCTCTCCCTCTCCA 59.960 60.000 0.00 0.00 0.00 3.86
923 2479 1.014804 ACACTCCTCTCCCTCTCCAT 58.985 55.000 0.00 0.00 0.00 3.41
996 2620 2.954611 CGAGAGCTCACACCGACA 59.045 61.111 17.77 0.00 0.00 4.35
1077 2701 3.077556 AAGGTCGAGCGCCTCCAT 61.078 61.111 9.28 0.00 34.81 3.41
1197 2833 1.369091 CCGGAGAAAATGGAGGTGCG 61.369 60.000 0.00 0.00 0.00 5.34
1345 3014 2.086610 TTCCTTTTGCTTCTTGCCCT 57.913 45.000 0.00 0.00 42.00 5.19
1357 3026 0.037326 CTTGCCCTGTTCGCTCTGTA 60.037 55.000 0.00 0.00 0.00 2.74
1365 3034 4.304110 CCTGTTCGCTCTGTAACTTACAA 58.696 43.478 3.26 0.00 38.38 2.41
1366 3035 4.929808 CCTGTTCGCTCTGTAACTTACAAT 59.070 41.667 3.26 0.00 38.38 2.71
1367 3036 5.163953 CCTGTTCGCTCTGTAACTTACAATG 60.164 44.000 3.26 1.02 38.38 2.82
1368 3037 4.688879 TGTTCGCTCTGTAACTTACAATGG 59.311 41.667 3.26 0.00 38.38 3.16
1369 3038 4.794278 TCGCTCTGTAACTTACAATGGA 57.206 40.909 3.26 0.00 38.38 3.41
1370 3039 4.744570 TCGCTCTGTAACTTACAATGGAG 58.255 43.478 10.37 10.37 38.38 3.86
1371 3040 4.461431 TCGCTCTGTAACTTACAATGGAGA 59.539 41.667 15.80 8.35 38.38 3.71
1372 3041 5.127194 TCGCTCTGTAACTTACAATGGAGAT 59.873 40.000 15.80 0.00 38.38 2.75
1373 3042 5.812642 CGCTCTGTAACTTACAATGGAGATT 59.187 40.000 15.80 0.00 38.38 2.40
1374 3043 6.978659 CGCTCTGTAACTTACAATGGAGATTA 59.021 38.462 15.80 0.00 38.38 1.75
1375 3044 7.491372 CGCTCTGTAACTTACAATGGAGATTAA 59.509 37.037 15.80 0.00 38.38 1.40
1376 3045 9.331282 GCTCTGTAACTTACAATGGAGATTAAT 57.669 33.333 15.80 0.00 38.38 1.40
1383 3052 8.000780 ACTTACAATGGAGATTAATCTTTGCC 57.999 34.615 18.88 15.38 37.25 4.52
1384 3053 5.859205 ACAATGGAGATTAATCTTTGCCC 57.141 39.130 18.88 15.05 37.25 5.36
1385 3054 5.271598 ACAATGGAGATTAATCTTTGCCCA 58.728 37.500 20.20 20.20 37.25 5.36
1386 3055 5.721000 ACAATGGAGATTAATCTTTGCCCAA 59.279 36.000 21.24 9.96 37.25 4.12
1387 3056 6.127253 ACAATGGAGATTAATCTTTGCCCAAG 60.127 38.462 21.24 18.74 37.25 3.61
1388 3057 5.191727 TGGAGATTAATCTTTGCCCAAGA 57.808 39.130 18.88 0.00 46.01 3.02
1389 3058 5.579047 TGGAGATTAATCTTTGCCCAAGAA 58.421 37.500 18.88 0.00 45.06 2.52
1390 3059 6.015918 TGGAGATTAATCTTTGCCCAAGAAA 58.984 36.000 18.88 0.00 45.06 2.52
1391 3060 6.496565 TGGAGATTAATCTTTGCCCAAGAAAA 59.503 34.615 18.88 0.00 45.06 2.29
1392 3061 7.180766 TGGAGATTAATCTTTGCCCAAGAAAAT 59.819 33.333 18.88 3.84 45.06 1.82
1393 3062 8.695456 GGAGATTAATCTTTGCCCAAGAAAATA 58.305 33.333 18.88 0.00 45.06 1.40
1394 3063 9.521503 GAGATTAATCTTTGCCCAAGAAAATAC 57.478 33.333 18.88 0.00 45.06 1.89
1395 3064 9.034800 AGATTAATCTTTGCCCAAGAAAATACA 57.965 29.630 12.37 0.00 45.06 2.29
1396 3065 9.651913 GATTAATCTTTGCCCAAGAAAATACAA 57.348 29.630 8.27 0.00 45.06 2.41
1438 3123 3.044280 TGCGTTCGTGCAGAGGTA 58.956 55.556 0.00 0.00 40.62 3.08
1454 3139 2.033448 TAACCAAGGCCGTGCAGG 59.967 61.111 13.88 6.79 44.97 4.85
1616 3387 3.239253 ACCAGGAACGGAAGCGGT 61.239 61.111 0.00 0.00 0.00 5.68
1723 3512 4.149970 GAGTCGTCGTCGAGCGCT 62.150 66.667 11.27 11.27 46.96 5.92
1724 3513 2.796425 GAGTCGTCGTCGAGCGCTA 61.796 63.158 11.50 0.00 46.96 4.26
1766 3594 6.195983 CGAGGATACACGTAAATGAACTACAC 59.804 42.308 0.00 0.00 46.09 2.90
1807 3650 1.553248 TGGCGGTGCTAGAAATGTACT 59.447 47.619 0.00 0.00 0.00 2.73
1808 3651 2.202566 GGCGGTGCTAGAAATGTACTC 58.797 52.381 0.00 0.00 0.00 2.59
1809 3652 2.202566 GCGGTGCTAGAAATGTACTCC 58.797 52.381 0.00 0.00 0.00 3.85
1810 3653 2.418197 GCGGTGCTAGAAATGTACTCCA 60.418 50.000 0.00 0.00 0.00 3.86
1811 3654 3.741388 GCGGTGCTAGAAATGTACTCCAT 60.741 47.826 0.00 0.00 34.36 3.41
1812 3655 3.804325 CGGTGCTAGAAATGTACTCCATG 59.196 47.826 0.00 0.00 32.82 3.66
1813 3656 3.561725 GGTGCTAGAAATGTACTCCATGC 59.438 47.826 0.00 0.00 32.82 4.06
1814 3657 4.191544 GTGCTAGAAATGTACTCCATGCA 58.808 43.478 0.00 0.00 32.82 3.96
1815 3658 4.818546 GTGCTAGAAATGTACTCCATGCAT 59.181 41.667 0.00 0.00 34.68 3.96
1816 3659 5.297776 GTGCTAGAAATGTACTCCATGCATT 59.702 40.000 0.00 0.00 44.63 3.56
1817 3660 6.483307 GTGCTAGAAATGTACTCCATGCATTA 59.517 38.462 0.00 0.00 42.21 1.90
1818 3661 7.012327 GTGCTAGAAATGTACTCCATGCATTAA 59.988 37.037 0.00 0.00 42.21 1.40
1819 3662 7.720957 TGCTAGAAATGTACTCCATGCATTAAT 59.279 33.333 0.00 0.00 42.21 1.40
1820 3663 8.571336 GCTAGAAATGTACTCCATGCATTAATT 58.429 33.333 0.00 0.00 42.21 1.40
1826 3669 8.938801 ATGTACTCCATGCATTAATTATTCCA 57.061 30.769 0.00 0.00 27.36 3.53
1827 3670 8.938801 TGTACTCCATGCATTAATTATTCCAT 57.061 30.769 0.00 0.00 0.00 3.41
1828 3671 9.365906 TGTACTCCATGCATTAATTATTCCATT 57.634 29.630 0.00 0.00 0.00 3.16
1829 3672 9.630098 GTACTCCATGCATTAATTATTCCATTG 57.370 33.333 0.00 0.00 0.00 2.82
1830 3673 7.673180 ACTCCATGCATTAATTATTCCATTGG 58.327 34.615 0.00 0.00 0.00 3.16
1831 3674 7.510001 ACTCCATGCATTAATTATTCCATTGGA 59.490 33.333 0.00 0.00 0.00 3.53
1832 3675 7.898918 TCCATGCATTAATTATTCCATTGGAG 58.101 34.615 5.36 0.00 31.21 3.86
1833 3676 7.038870 TCCATGCATTAATTATTCCATTGGAGG 60.039 37.037 5.36 0.00 31.21 4.30
1834 3677 7.038870 CCATGCATTAATTATTCCATTGGAGGA 60.039 37.037 5.36 0.00 35.41 3.71
1835 3678 7.528996 TGCATTAATTATTCCATTGGAGGAG 57.471 36.000 5.36 0.00 39.25 3.69
1841 3684 5.687166 TTATTCCATTGGAGGAGTACGTT 57.313 39.130 5.36 0.00 39.25 3.99
1970 5240 0.656259 CGTTCGTCGAGGATCTAGCA 59.344 55.000 8.88 0.00 42.86 3.49
2009 5279 5.654603 TTGCGAGGAATAACTTCAGACTA 57.345 39.130 0.00 0.00 32.70 2.59
2010 5280 4.995124 TGCGAGGAATAACTTCAGACTAC 58.005 43.478 0.00 0.00 32.70 2.73
2064 5334 9.709495 TGAATAATTAATAAAATGGCTGCATCC 57.291 29.630 0.00 0.00 0.00 3.51
2069 5339 2.973694 AAAATGGCTGCATCCATCAC 57.026 45.000 21.84 0.00 45.64 3.06
2070 5340 2.154567 AAATGGCTGCATCCATCACT 57.845 45.000 21.84 4.49 45.64 3.41
2081 5351 3.244044 GCATCCATCACTAGGTCTTCCTC 60.244 52.174 0.00 0.00 43.94 3.71
2091 5361 6.062095 CACTAGGTCTTCCTCCTTTTCAAAA 58.938 40.000 0.00 0.00 43.94 2.44
2320 7070 7.044798 TGGAACAAGAAAATGAAAACGGAAAT 58.955 30.769 0.00 0.00 31.92 2.17
2335 7182 5.568620 ACGGAAATAAATGCCCTCTCTAT 57.431 39.130 0.00 0.00 0.00 1.98
2372 7219 4.322725 GGGTCACCCTCATTTTCAAAATCC 60.323 45.833 5.22 0.00 41.34 3.01
2409 9506 3.929094 TCATAACAAGACCGGTGGTTAC 58.071 45.455 14.63 0.00 35.25 2.50
2411 9508 2.249844 AACAAGACCGGTGGTTACAG 57.750 50.000 14.63 0.00 35.25 2.74
2417 9514 0.683412 ACCGGTGGTTACAGGAAGAC 59.317 55.000 6.12 0.00 43.89 3.01
2508 9606 2.026822 GGTGATTAGGCGATGATGGGAT 60.027 50.000 0.00 0.00 0.00 3.85
2588 9692 8.506168 TTCAGTTGTCAGTTCTAACAATTTCT 57.494 30.769 0.00 0.00 0.00 2.52
2685 9799 1.071542 TCAAAGAATGGTGAGACCGCA 59.928 47.619 0.00 0.00 42.58 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.682465 AACCTTATCTTCATTACTTCCTTTACC 57.318 33.333 0.00 0.00 0.00 2.85
3 4 9.807921 TTGAACCTTATCTTCATTACTTCCTTT 57.192 29.630 0.00 0.00 0.00 3.11
4 5 9.454859 CTTGAACCTTATCTTCATTACTTCCTT 57.545 33.333 0.00 0.00 0.00 3.36
5 6 8.826765 TCTTGAACCTTATCTTCATTACTTCCT 58.173 33.333 0.00 0.00 0.00 3.36
6 7 9.103861 CTCTTGAACCTTATCTTCATTACTTCC 57.896 37.037 0.00 0.00 0.00 3.46
7 8 9.877178 TCTCTTGAACCTTATCTTCATTACTTC 57.123 33.333 0.00 0.00 0.00 3.01
8 9 9.883142 CTCTCTTGAACCTTATCTTCATTACTT 57.117 33.333 0.00 0.00 0.00 2.24
9 10 7.984617 GCTCTCTTGAACCTTATCTTCATTACT 59.015 37.037 0.00 0.00 0.00 2.24
10 11 7.043059 CGCTCTCTTGAACCTTATCTTCATTAC 60.043 40.741 0.00 0.00 0.00 1.89
11 12 6.980978 CGCTCTCTTGAACCTTATCTTCATTA 59.019 38.462 0.00 0.00 0.00 1.90
12 13 5.814705 CGCTCTCTTGAACCTTATCTTCATT 59.185 40.000 0.00 0.00 0.00 2.57
13 14 5.127845 TCGCTCTCTTGAACCTTATCTTCAT 59.872 40.000 0.00 0.00 0.00 2.57
14 15 4.462834 TCGCTCTCTTGAACCTTATCTTCA 59.537 41.667 0.00 0.00 0.00 3.02
15 16 5.000012 TCGCTCTCTTGAACCTTATCTTC 58.000 43.478 0.00 0.00 0.00 2.87
16 17 4.707448 TCTCGCTCTCTTGAACCTTATCTT 59.293 41.667 0.00 0.00 0.00 2.40
17 18 4.097286 GTCTCGCTCTCTTGAACCTTATCT 59.903 45.833 0.00 0.00 0.00 1.98
18 19 4.142359 TGTCTCGCTCTCTTGAACCTTATC 60.142 45.833 0.00 0.00 0.00 1.75
19 20 3.764434 TGTCTCGCTCTCTTGAACCTTAT 59.236 43.478 0.00 0.00 0.00 1.73
20 21 3.154710 TGTCTCGCTCTCTTGAACCTTA 58.845 45.455 0.00 0.00 0.00 2.69
21 22 1.964223 TGTCTCGCTCTCTTGAACCTT 59.036 47.619 0.00 0.00 0.00 3.50
22 23 1.621992 TGTCTCGCTCTCTTGAACCT 58.378 50.000 0.00 0.00 0.00 3.50
23 24 2.535331 GATGTCTCGCTCTCTTGAACC 58.465 52.381 0.00 0.00 0.00 3.62
24 25 2.535331 GGATGTCTCGCTCTCTTGAAC 58.465 52.381 0.00 0.00 0.00 3.18
25 26 1.478510 GGGATGTCTCGCTCTCTTGAA 59.521 52.381 0.00 0.00 0.00 2.69
26 27 1.107114 GGGATGTCTCGCTCTCTTGA 58.893 55.000 0.00 0.00 0.00 3.02
27 28 1.110442 AGGGATGTCTCGCTCTCTTG 58.890 55.000 0.00 0.00 40.40 3.02
28 29 1.110442 CAGGGATGTCTCGCTCTCTT 58.890 55.000 0.00 0.00 42.35 2.85
29 30 0.033601 ACAGGGATGTCTCGCTCTCT 60.034 55.000 0.00 0.00 42.35 3.10
30 31 0.820871 AACAGGGATGTCTCGCTCTC 59.179 55.000 0.00 0.00 42.35 3.20
31 32 0.534412 CAACAGGGATGTCTCGCTCT 59.466 55.000 0.00 0.00 42.35 4.09
32 33 0.460987 CCAACAGGGATGTCTCGCTC 60.461 60.000 0.00 0.00 42.35 5.03
33 34 1.194781 ACCAACAGGGATGTCTCGCT 61.195 55.000 0.00 0.00 44.88 4.93
34 35 0.741221 GACCAACAGGGATGTCTCGC 60.741 60.000 0.00 0.00 41.15 5.03
35 36 0.898320 AGACCAACAGGGATGTCTCG 59.102 55.000 0.00 0.00 41.15 4.04
36 37 2.303022 TGAAGACCAACAGGGATGTCTC 59.697 50.000 0.00 0.00 37.09 3.36
37 38 2.338809 TGAAGACCAACAGGGATGTCT 58.661 47.619 0.00 0.00 39.66 3.41
38 39 2.859165 TGAAGACCAACAGGGATGTC 57.141 50.000 0.00 0.00 41.15 3.06
39 40 2.711009 TCTTGAAGACCAACAGGGATGT 59.289 45.455 0.00 0.00 41.15 3.06
40 41 3.423539 TCTTGAAGACCAACAGGGATG 57.576 47.619 0.00 0.00 41.15 3.51
41 42 4.401925 CTTTCTTGAAGACCAACAGGGAT 58.598 43.478 0.00 0.00 41.15 3.85
42 43 3.820557 CTTTCTTGAAGACCAACAGGGA 58.179 45.455 0.00 0.00 41.15 4.20
43 44 2.294512 GCTTTCTTGAAGACCAACAGGG 59.705 50.000 0.00 0.00 37.57 4.45
44 45 3.004106 CAGCTTTCTTGAAGACCAACAGG 59.996 47.826 0.00 0.00 37.57 4.00
45 46 3.879295 TCAGCTTTCTTGAAGACCAACAG 59.121 43.478 0.00 0.00 37.57 3.16
46 47 3.884895 TCAGCTTTCTTGAAGACCAACA 58.115 40.909 0.00 0.00 37.57 3.33
47 48 4.900635 TTCAGCTTTCTTGAAGACCAAC 57.099 40.909 0.00 0.00 37.57 3.77
48 49 5.913137 TTTTCAGCTTTCTTGAAGACCAA 57.087 34.783 0.00 0.00 37.57 3.67
49 50 5.913137 TTTTTCAGCTTTCTTGAAGACCA 57.087 34.783 0.00 0.00 37.57 4.02
68 69 8.188799 TGTCTCATTATCGTCGAGATAGTTTTT 58.811 33.333 0.00 0.00 42.29 1.94
69 70 7.704271 TGTCTCATTATCGTCGAGATAGTTTT 58.296 34.615 0.00 0.00 42.29 2.43
70 71 7.260558 TGTCTCATTATCGTCGAGATAGTTT 57.739 36.000 0.00 0.00 42.29 2.66
71 72 6.862711 TGTCTCATTATCGTCGAGATAGTT 57.137 37.500 0.00 0.00 42.29 2.24
72 73 6.293516 GGTTGTCTCATTATCGTCGAGATAGT 60.294 42.308 0.00 0.00 42.29 2.12
73 74 6.081049 GGTTGTCTCATTATCGTCGAGATAG 58.919 44.000 0.00 0.00 42.29 2.08
74 75 5.048921 GGGTTGTCTCATTATCGTCGAGATA 60.049 44.000 0.00 0.00 40.66 1.98
75 76 4.261656 GGGTTGTCTCATTATCGTCGAGAT 60.262 45.833 0.00 0.00 43.19 2.75
76 77 3.066342 GGGTTGTCTCATTATCGTCGAGA 59.934 47.826 0.00 0.00 33.46 4.04
77 78 3.181490 TGGGTTGTCTCATTATCGTCGAG 60.181 47.826 0.00 0.00 0.00 4.04
78 79 2.756207 TGGGTTGTCTCATTATCGTCGA 59.244 45.455 0.00 0.00 0.00 4.20
79 80 3.159353 TGGGTTGTCTCATTATCGTCG 57.841 47.619 0.00 0.00 0.00 5.12
80 81 5.411669 ACTTTTGGGTTGTCTCATTATCGTC 59.588 40.000 0.00 0.00 0.00 4.20
81 82 5.313712 ACTTTTGGGTTGTCTCATTATCGT 58.686 37.500 0.00 0.00 0.00 3.73
82 83 5.411361 TGACTTTTGGGTTGTCTCATTATCG 59.589 40.000 0.00 0.00 0.00 2.92
83 84 6.817765 TGACTTTTGGGTTGTCTCATTATC 57.182 37.500 0.00 0.00 0.00 1.75
84 85 6.721208 ACATGACTTTTGGGTTGTCTCATTAT 59.279 34.615 0.00 0.00 0.00 1.28
85 86 6.068010 ACATGACTTTTGGGTTGTCTCATTA 58.932 36.000 0.00 0.00 0.00 1.90
86 87 4.895297 ACATGACTTTTGGGTTGTCTCATT 59.105 37.500 0.00 0.00 0.00 2.57
87 88 4.473444 ACATGACTTTTGGGTTGTCTCAT 58.527 39.130 0.00 0.00 0.00 2.90
88 89 3.882888 GACATGACTTTTGGGTTGTCTCA 59.117 43.478 0.00 0.00 32.69 3.27
89 90 4.137543 AGACATGACTTTTGGGTTGTCTC 58.862 43.478 0.00 0.00 39.55 3.36
90 91 4.170468 AGACATGACTTTTGGGTTGTCT 57.830 40.909 0.00 0.00 39.06 3.41
91 92 4.338118 TCAAGACATGACTTTTGGGTTGTC 59.662 41.667 7.73 0.00 34.99 3.18
92 93 4.277476 TCAAGACATGACTTTTGGGTTGT 58.723 39.130 7.73 0.00 31.50 3.32
93 94 4.916983 TCAAGACATGACTTTTGGGTTG 57.083 40.909 7.73 0.00 31.50 3.77
94 95 4.262164 GCATCAAGACATGACTTTTGGGTT 60.262 41.667 7.73 0.00 41.93 4.11
95 96 3.256631 GCATCAAGACATGACTTTTGGGT 59.743 43.478 7.73 0.00 41.93 4.51
96 97 3.367703 GGCATCAAGACATGACTTTTGGG 60.368 47.826 7.73 0.00 41.93 4.12
97 98 3.671433 CGGCATCAAGACATGACTTTTGG 60.671 47.826 7.73 2.11 41.93 3.28
98 99 3.495193 CGGCATCAAGACATGACTTTTG 58.505 45.455 7.73 9.75 41.93 2.44
99 100 2.095059 GCGGCATCAAGACATGACTTTT 60.095 45.455 7.73 0.00 41.93 2.27
100 101 1.470098 GCGGCATCAAGACATGACTTT 59.530 47.619 7.73 0.00 41.93 2.66
101 102 1.089920 GCGGCATCAAGACATGACTT 58.910 50.000 4.51 4.51 41.93 3.01
102 103 0.036105 TGCGGCATCAAGACATGACT 60.036 50.000 0.00 0.00 41.93 3.41
103 104 0.097674 GTGCGGCATCAAGACATGAC 59.902 55.000 5.72 0.00 41.93 3.06
104 105 1.360931 CGTGCGGCATCAAGACATGA 61.361 55.000 5.72 0.00 43.67 3.07
105 106 1.061411 CGTGCGGCATCAAGACATG 59.939 57.895 5.72 0.00 0.00 3.21
106 107 1.361668 GACGTGCGGCATCAAGACAT 61.362 55.000 5.72 0.00 0.00 3.06
107 108 2.027073 GACGTGCGGCATCAAGACA 61.027 57.895 5.72 0.00 0.00 3.41
108 109 1.291877 AAGACGTGCGGCATCAAGAC 61.292 55.000 5.72 0.00 0.00 3.01
109 110 0.602638 AAAGACGTGCGGCATCAAGA 60.603 50.000 5.72 0.00 0.00 3.02
110 111 0.238289 AAAAGACGTGCGGCATCAAG 59.762 50.000 5.72 0.94 0.00 3.02
111 112 0.237235 GAAAAGACGTGCGGCATCAA 59.763 50.000 5.72 0.00 0.00 2.57
112 113 0.602638 AGAAAAGACGTGCGGCATCA 60.603 50.000 5.72 0.00 0.00 3.07
113 114 0.179215 CAGAAAAGACGTGCGGCATC 60.179 55.000 5.72 0.00 0.00 3.91
114 115 1.577328 CCAGAAAAGACGTGCGGCAT 61.577 55.000 5.72 0.00 0.00 4.40
115 116 2.250939 CCAGAAAAGACGTGCGGCA 61.251 57.895 0.00 0.00 0.00 5.69
116 117 1.901650 CTCCAGAAAAGACGTGCGGC 61.902 60.000 0.00 0.00 0.00 6.53
117 118 1.291877 CCTCCAGAAAAGACGTGCGG 61.292 60.000 0.00 0.00 0.00 5.69
118 119 1.901650 GCCTCCAGAAAAGACGTGCG 61.902 60.000 0.00 0.00 0.00 5.34
119 120 0.603975 AGCCTCCAGAAAAGACGTGC 60.604 55.000 0.00 0.00 0.00 5.34
120 121 2.743636 TAGCCTCCAGAAAAGACGTG 57.256 50.000 0.00 0.00 0.00 4.49
121 122 3.983044 AATAGCCTCCAGAAAAGACGT 57.017 42.857 0.00 0.00 0.00 4.34
122 123 4.253685 TCAAATAGCCTCCAGAAAAGACG 58.746 43.478 0.00 0.00 0.00 4.18
123 124 6.765915 ATTCAAATAGCCTCCAGAAAAGAC 57.234 37.500 0.00 0.00 0.00 3.01
124 125 7.671398 AGAAATTCAAATAGCCTCCAGAAAAGA 59.329 33.333 0.00 0.00 0.00 2.52
125 126 7.834803 AGAAATTCAAATAGCCTCCAGAAAAG 58.165 34.615 0.00 0.00 0.00 2.27
126 127 7.781324 AGAAATTCAAATAGCCTCCAGAAAA 57.219 32.000 0.00 0.00 0.00 2.29
127 128 7.671398 AGAAGAAATTCAAATAGCCTCCAGAAA 59.329 33.333 0.00 0.00 0.00 2.52
128 129 7.177878 AGAAGAAATTCAAATAGCCTCCAGAA 58.822 34.615 0.00 0.00 0.00 3.02
129 130 6.725364 AGAAGAAATTCAAATAGCCTCCAGA 58.275 36.000 0.00 0.00 0.00 3.86
130 131 6.827762 AGAGAAGAAATTCAAATAGCCTCCAG 59.172 38.462 0.00 0.00 0.00 3.86
131 132 6.725364 AGAGAAGAAATTCAAATAGCCTCCA 58.275 36.000 0.00 0.00 0.00 3.86
132 133 7.637631 AAGAGAAGAAATTCAAATAGCCTCC 57.362 36.000 0.00 0.00 0.00 4.30
133 134 8.616942 GGTAAGAGAAGAAATTCAAATAGCCTC 58.383 37.037 0.00 0.00 0.00 4.70
134 135 8.332487 AGGTAAGAGAAGAAATTCAAATAGCCT 58.668 33.333 0.00 0.00 0.00 4.58
135 136 8.512966 AGGTAAGAGAAGAAATTCAAATAGCC 57.487 34.615 0.00 0.00 0.00 3.93
136 137 9.995957 GAAGGTAAGAGAAGAAATTCAAATAGC 57.004 33.333 0.00 0.00 0.00 2.97
139 140 8.940397 TGGAAGGTAAGAGAAGAAATTCAAAT 57.060 30.769 0.00 0.00 0.00 2.32
140 141 7.998964 ACTGGAAGGTAAGAGAAGAAATTCAAA 59.001 33.333 0.00 0.00 39.30 2.69
141 142 7.518188 ACTGGAAGGTAAGAGAAGAAATTCAA 58.482 34.615 0.00 0.00 39.30 2.69
142 143 7.079451 ACTGGAAGGTAAGAGAAGAAATTCA 57.921 36.000 0.00 0.00 39.30 2.57
143 144 7.094592 CCAACTGGAAGGTAAGAGAAGAAATTC 60.095 40.741 0.00 0.00 39.30 2.17
144 145 6.717084 CCAACTGGAAGGTAAGAGAAGAAATT 59.283 38.462 0.00 0.00 39.30 1.82
145 146 6.241645 CCAACTGGAAGGTAAGAGAAGAAAT 58.758 40.000 0.00 0.00 39.30 2.17
146 147 5.621193 CCAACTGGAAGGTAAGAGAAGAAA 58.379 41.667 0.00 0.00 39.30 2.52
147 148 4.505039 GCCAACTGGAAGGTAAGAGAAGAA 60.505 45.833 0.00 0.00 39.30 2.52
148 149 3.008049 GCCAACTGGAAGGTAAGAGAAGA 59.992 47.826 0.00 0.00 39.30 2.87
149 150 3.339141 GCCAACTGGAAGGTAAGAGAAG 58.661 50.000 0.00 0.00 39.30 2.85
150 151 2.039879 GGCCAACTGGAAGGTAAGAGAA 59.960 50.000 0.00 0.00 39.30 2.87
151 152 1.628846 GGCCAACTGGAAGGTAAGAGA 59.371 52.381 0.00 0.00 39.30 3.10
152 153 1.676014 CGGCCAACTGGAAGGTAAGAG 60.676 57.143 2.24 0.00 39.30 2.85
153 154 0.323629 CGGCCAACTGGAAGGTAAGA 59.676 55.000 2.24 0.00 39.30 2.10
154 155 1.305930 GCGGCCAACTGGAAGGTAAG 61.306 60.000 2.24 0.00 39.30 2.34
155 156 1.302993 GCGGCCAACTGGAAGGTAA 60.303 57.895 2.24 0.00 39.30 2.85
156 157 1.847798 ATGCGGCCAACTGGAAGGTA 61.848 55.000 2.24 0.00 39.30 3.08
157 158 1.847798 TATGCGGCCAACTGGAAGGT 61.848 55.000 2.24 0.00 39.30 3.50
158 159 1.077787 TATGCGGCCAACTGGAAGG 60.078 57.895 2.24 0.00 39.30 3.46
159 160 1.376609 GGTATGCGGCCAACTGGAAG 61.377 60.000 2.24 0.00 42.29 3.46
160 161 1.377987 GGTATGCGGCCAACTGGAA 60.378 57.895 2.24 0.00 37.39 3.53
161 162 1.847798 AAGGTATGCGGCCAACTGGA 61.848 55.000 2.24 0.00 37.39 3.86
162 163 0.965363 AAAGGTATGCGGCCAACTGG 60.965 55.000 2.24 0.00 38.53 4.00
163 164 0.171007 CAAAGGTATGCGGCCAACTG 59.829 55.000 2.24 0.00 0.00 3.16
164 165 0.965363 CCAAAGGTATGCGGCCAACT 60.965 55.000 2.24 0.00 0.00 3.16
165 166 0.963355 TCCAAAGGTATGCGGCCAAC 60.963 55.000 2.24 0.00 0.00 3.77
166 167 0.033601 ATCCAAAGGTATGCGGCCAA 60.034 50.000 2.24 0.00 0.00 4.52
167 168 0.465460 GATCCAAAGGTATGCGGCCA 60.465 55.000 2.24 0.00 0.00 5.36
168 169 1.507141 CGATCCAAAGGTATGCGGCC 61.507 60.000 0.00 0.00 0.00 6.13
169 170 0.814010 ACGATCCAAAGGTATGCGGC 60.814 55.000 0.00 0.00 0.00 6.53
170 171 1.202533 AGACGATCCAAAGGTATGCGG 60.203 52.381 0.00 0.00 0.00 5.69
171 172 2.225068 AGACGATCCAAAGGTATGCG 57.775 50.000 0.00 0.00 0.00 4.73
172 173 2.872858 GGAAGACGATCCAAAGGTATGC 59.127 50.000 0.00 0.00 39.42 3.14
173 174 4.408182 AGGAAGACGATCCAAAGGTATG 57.592 45.455 8.84 0.00 42.27 2.39
174 175 6.749036 ATAAGGAAGACGATCCAAAGGTAT 57.251 37.500 8.84 0.00 42.27 2.73
175 176 6.383147 AGAATAAGGAAGACGATCCAAAGGTA 59.617 38.462 8.84 0.00 42.27 3.08
176 177 5.189934 AGAATAAGGAAGACGATCCAAAGGT 59.810 40.000 8.84 0.00 42.27 3.50
177 178 5.675538 AGAATAAGGAAGACGATCCAAAGG 58.324 41.667 8.84 0.00 42.27 3.11
178 179 8.894768 ATTAGAATAAGGAAGACGATCCAAAG 57.105 34.615 8.84 0.00 42.27 2.77
179 180 7.931948 GGATTAGAATAAGGAAGACGATCCAAA 59.068 37.037 8.84 0.00 42.27 3.28
180 181 7.070696 TGGATTAGAATAAGGAAGACGATCCAA 59.929 37.037 8.84 0.00 42.27 3.53
181 182 6.553476 TGGATTAGAATAAGGAAGACGATCCA 59.447 38.462 8.84 0.00 42.27 3.41
182 183 6.994221 TGGATTAGAATAAGGAAGACGATCC 58.006 40.000 0.00 0.00 39.96 3.36
183 184 8.307483 TCATGGATTAGAATAAGGAAGACGATC 58.693 37.037 0.00 0.00 0.00 3.69
184 185 8.195165 TCATGGATTAGAATAAGGAAGACGAT 57.805 34.615 0.00 0.00 0.00 3.73
185 186 7.597288 TCATGGATTAGAATAAGGAAGACGA 57.403 36.000 0.00 0.00 0.00 4.20
186 187 8.839310 AATCATGGATTAGAATAAGGAAGACG 57.161 34.615 0.00 0.00 29.72 4.18
191 192 9.384849 TGAGAGAATCATGGATTAGAATAAGGA 57.615 33.333 0.00 0.00 37.82 3.36
192 193 9.434420 GTGAGAGAATCATGGATTAGAATAAGG 57.566 37.037 0.00 0.00 40.92 2.69
195 196 8.811017 GGAGTGAGAGAATCATGGATTAGAATA 58.189 37.037 0.00 0.00 40.92 1.75
196 197 7.256619 GGGAGTGAGAGAATCATGGATTAGAAT 60.257 40.741 0.00 0.00 40.92 2.40
197 198 6.042552 GGGAGTGAGAGAATCATGGATTAGAA 59.957 42.308 0.00 0.00 40.92 2.10
198 199 5.541868 GGGAGTGAGAGAATCATGGATTAGA 59.458 44.000 0.00 0.00 40.92 2.10
199 200 5.306419 TGGGAGTGAGAGAATCATGGATTAG 59.694 44.000 0.00 0.00 40.92 1.73
200 201 5.218959 TGGGAGTGAGAGAATCATGGATTA 58.781 41.667 0.00 0.00 40.92 1.75
201 202 4.042884 TGGGAGTGAGAGAATCATGGATT 58.957 43.478 0.00 0.00 40.92 3.01
202 203 3.647113 CTGGGAGTGAGAGAATCATGGAT 59.353 47.826 0.00 0.00 40.92 3.41
203 204 3.036819 CTGGGAGTGAGAGAATCATGGA 58.963 50.000 0.00 0.00 40.92 3.41
204 205 2.485124 GCTGGGAGTGAGAGAATCATGG 60.485 54.545 0.00 0.00 40.92 3.66
205 206 2.802415 CGCTGGGAGTGAGAGAATCATG 60.802 54.545 0.00 0.00 40.92 3.07
206 207 1.411977 CGCTGGGAGTGAGAGAATCAT 59.588 52.381 0.00 0.00 40.92 2.45
207 208 0.820226 CGCTGGGAGTGAGAGAATCA 59.180 55.000 0.00 0.00 37.82 2.57
208 209 0.103937 CCGCTGGGAGTGAGAGAATC 59.896 60.000 0.00 0.00 34.06 2.52
209 210 0.324738 TCCGCTGGGAGTGAGAGAAT 60.325 55.000 0.00 0.00 37.43 2.40
210 211 1.076727 TCCGCTGGGAGTGAGAGAA 59.923 57.895 0.00 0.00 37.43 2.87
211 212 2.763902 TCCGCTGGGAGTGAGAGA 59.236 61.111 0.00 0.00 37.43 3.10
220 221 0.543749 AAAGAAGGAGATCCGCTGGG 59.456 55.000 0.00 0.00 42.08 4.45
221 222 1.661341 CAAAGAAGGAGATCCGCTGG 58.339 55.000 0.00 0.00 42.08 4.85
222 223 1.012841 GCAAAGAAGGAGATCCGCTG 58.987 55.000 0.00 0.00 42.08 5.18
223 224 0.615331 TGCAAAGAAGGAGATCCGCT 59.385 50.000 0.00 0.00 42.08 5.52
224 225 1.012841 CTGCAAAGAAGGAGATCCGC 58.987 55.000 0.00 0.00 42.08 5.54
225 226 1.661341 CCTGCAAAGAAGGAGATCCG 58.339 55.000 0.00 0.00 42.08 4.18
226 227 1.409381 CCCCTGCAAAGAAGGAGATCC 60.409 57.143 0.00 0.00 36.91 3.36
227 228 2.021208 GCCCCTGCAAAGAAGGAGATC 61.021 57.143 0.00 0.00 36.91 2.75
228 229 0.033699 GCCCCTGCAAAGAAGGAGAT 60.034 55.000 0.00 0.00 36.91 2.75
229 230 1.380302 GCCCCTGCAAAGAAGGAGA 59.620 57.895 0.00 0.00 36.91 3.71
230 231 1.075482 TGCCCCTGCAAAGAAGGAG 59.925 57.895 0.00 0.00 46.66 3.69
231 232 3.260297 TGCCCCTGCAAAGAAGGA 58.740 55.556 0.00 0.00 46.66 3.36
244 245 2.348998 CATAGAGCGGGGATGCCC 59.651 66.667 13.41 13.41 44.51 5.36
245 246 2.359230 GCATAGAGCGGGGATGCC 60.359 66.667 0.00 0.00 40.08 4.40
254 255 1.960612 ACGGAGATCGGCATAGAGC 59.039 57.895 0.00 0.00 44.45 4.09
261 262 4.492160 TGCACGACGGAGATCGGC 62.492 66.667 0.00 1.60 46.56 5.54
262 263 2.579787 GTGCACGACGGAGATCGG 60.580 66.667 0.00 0.00 46.56 4.18
264 265 0.524392 CAGAGTGCACGACGGAGATC 60.524 60.000 12.01 0.33 0.00 2.75
265 266 1.508545 CAGAGTGCACGACGGAGAT 59.491 57.895 12.01 0.00 0.00 2.75
266 267 2.626780 CCAGAGTGCACGACGGAGA 61.627 63.158 12.01 0.00 0.00 3.71
267 268 2.126307 CCAGAGTGCACGACGGAG 60.126 66.667 12.01 5.87 0.00 4.63
268 269 4.357947 GCCAGAGTGCACGACGGA 62.358 66.667 21.15 0.00 0.00 4.69
269 270 4.363990 AGCCAGAGTGCACGACGG 62.364 66.667 12.01 13.70 0.00 4.79
270 271 2.807045 GAGCCAGAGTGCACGACG 60.807 66.667 12.01 3.23 0.00 5.12
271 272 2.433318 GGAGCCAGAGTGCACGAC 60.433 66.667 12.01 10.03 0.00 4.34
272 273 2.038814 TTTGGAGCCAGAGTGCACGA 62.039 55.000 12.01 0.00 0.00 4.35
273 274 1.165907 TTTTGGAGCCAGAGTGCACG 61.166 55.000 12.01 0.00 0.00 5.34
274 275 1.032014 TTTTTGGAGCCAGAGTGCAC 58.968 50.000 9.40 9.40 0.00 4.57
275 276 1.614903 CATTTTTGGAGCCAGAGTGCA 59.385 47.619 0.00 0.00 0.00 4.57
276 277 1.670967 GCATTTTTGGAGCCAGAGTGC 60.671 52.381 6.67 6.67 0.00 4.40
277 278 2.358939 GCATTTTTGGAGCCAGAGTG 57.641 50.000 0.00 0.00 0.00 3.51
283 284 2.125552 GGCGGCATTTTTGGAGCC 60.126 61.111 3.07 0.00 44.89 4.70
284 285 2.506881 CGGCGGCATTTTTGGAGC 60.507 61.111 10.53 0.00 0.00 4.70
285 286 2.181525 CCGGCGGCATTTTTGGAG 59.818 61.111 15.42 0.00 0.00 3.86
329 330 4.899239 CCAGGTCAGGGCGATCGC 62.899 72.222 31.52 31.52 41.06 4.58
330 331 3.432051 GACCAGGTCAGGGCGATCG 62.432 68.421 15.43 11.69 32.09 3.69
331 332 2.022240 GAGACCAGGTCAGGGCGATC 62.022 65.000 22.31 4.71 43.43 3.69
332 333 2.039624 AGACCAGGTCAGGGCGAT 59.960 61.111 22.31 0.00 43.43 4.58
333 334 2.680352 GAGACCAGGTCAGGGCGA 60.680 66.667 22.31 0.00 43.43 5.54
334 335 3.775654 GGAGACCAGGTCAGGGCG 61.776 72.222 22.31 0.00 43.43 6.13
335 336 3.775654 CGGAGACCAGGTCAGGGC 61.776 72.222 22.31 7.69 34.60 5.19
336 337 0.613853 TTACGGAGACCAGGTCAGGG 60.614 60.000 22.31 11.73 34.60 4.45
337 338 1.263356 TTTACGGAGACCAGGTCAGG 58.737 55.000 22.31 12.08 34.60 3.86
338 339 2.496070 TGATTTACGGAGACCAGGTCAG 59.504 50.000 22.31 14.25 34.60 3.51
339 340 2.232941 GTGATTTACGGAGACCAGGTCA 59.767 50.000 22.31 0.00 34.60 4.02
340 341 2.889852 GTGATTTACGGAGACCAGGTC 58.110 52.381 12.25 12.25 0.00 3.85
352 353 5.753438 TCATCTAGGTCATTGCGTGATTTAC 59.247 40.000 0.00 0.00 39.48 2.01
353 354 5.753438 GTCATCTAGGTCATTGCGTGATTTA 59.247 40.000 0.00 0.00 39.48 1.40
354 355 4.572389 GTCATCTAGGTCATTGCGTGATTT 59.428 41.667 0.00 0.00 39.48 2.17
355 356 4.122776 GTCATCTAGGTCATTGCGTGATT 58.877 43.478 0.00 0.00 39.48 2.57
356 357 3.132824 TGTCATCTAGGTCATTGCGTGAT 59.867 43.478 0.00 0.00 39.48 3.06
357 358 2.495669 TGTCATCTAGGTCATTGCGTGA 59.504 45.455 0.00 0.00 0.00 4.35
358 359 2.892374 TGTCATCTAGGTCATTGCGTG 58.108 47.619 0.00 0.00 0.00 5.34
359 360 3.610040 TTGTCATCTAGGTCATTGCGT 57.390 42.857 0.00 0.00 0.00 5.24
360 361 5.390251 GCATATTGTCATCTAGGTCATTGCG 60.390 44.000 0.00 0.00 0.00 4.85
361 362 5.471116 TGCATATTGTCATCTAGGTCATTGC 59.529 40.000 0.00 0.00 0.00 3.56
362 363 7.500720 TTGCATATTGTCATCTAGGTCATTG 57.499 36.000 0.00 0.00 0.00 2.82
363 364 9.970553 ATATTGCATATTGTCATCTAGGTCATT 57.029 29.630 0.00 0.00 0.00 2.57
405 406 5.068636 GGATCGGATGGAGTACTACTACAA 58.931 45.833 6.66 0.00 43.35 2.41
420 421 5.582269 CAGCGACAATTAATATGGATCGGAT 59.418 40.000 0.00 0.00 0.00 4.18
477 478 9.807921 TTCAAAGAAAATACTACTCCTCCAATT 57.192 29.630 0.00 0.00 0.00 2.32
480 481 9.807921 AATTTCAAAGAAAATACTACTCCTCCA 57.192 29.630 0.00 0.00 0.00 3.86
497 503 9.339492 GATTCAACTGCTCTAAGAATTTCAAAG 57.661 33.333 0.00 0.00 0.00 2.77
500 506 6.375455 GGGATTCAACTGCTCTAAGAATTTCA 59.625 38.462 0.00 0.00 0.00 2.69
501 507 6.601217 AGGGATTCAACTGCTCTAAGAATTTC 59.399 38.462 0.00 0.00 0.00 2.17
553 559 1.135527 TGGGTCTACGCGTTTCATAGG 59.864 52.381 20.78 0.00 0.00 2.57
554 560 2.159282 ACTGGGTCTACGCGTTTCATAG 60.159 50.000 20.78 8.65 0.00 2.23
578 588 8.301002 GGCAGTTTATAGGTTTTTGTATGACAA 58.699 33.333 0.00 0.00 36.11 3.18
580 590 7.122204 AGGGCAGTTTATAGGTTTTTGTATGAC 59.878 37.037 0.00 0.00 0.00 3.06
596 607 7.172342 ACTTGTGTATATTTGAGGGCAGTTTA 58.828 34.615 0.00 0.00 0.00 2.01
685 701 2.588877 GCCATATGCACGGCGACT 60.589 61.111 16.62 0.00 38.82 4.18
750 810 5.347364 GTCGATGTGGAGAAGAGAAGAAAAG 59.653 44.000 0.00 0.00 0.00 2.27
814 889 5.859205 AAAGGAATGAGTCAGCTTGTTTT 57.141 34.783 0.00 0.00 0.00 2.43
815 890 5.859205 AAAAGGAATGAGTCAGCTTGTTT 57.141 34.783 0.00 0.00 0.00 2.83
817 892 4.889409 TCAAAAAGGAATGAGTCAGCTTGT 59.111 37.500 0.00 0.00 0.00 3.16
818 893 5.443185 TCAAAAAGGAATGAGTCAGCTTG 57.557 39.130 0.00 0.00 0.00 4.01
819 894 5.771666 TGATCAAAAAGGAATGAGTCAGCTT 59.228 36.000 0.00 0.00 0.00 3.74
820 895 5.319453 TGATCAAAAAGGAATGAGTCAGCT 58.681 37.500 0.00 0.00 0.00 4.24
821 896 5.633830 TGATCAAAAAGGAATGAGTCAGC 57.366 39.130 0.00 0.00 0.00 4.26
822 897 7.201714 GGAGATGATCAAAAAGGAATGAGTCAG 60.202 40.741 0.00 0.00 0.00 3.51
823 898 6.600822 GGAGATGATCAAAAAGGAATGAGTCA 59.399 38.462 0.00 0.00 0.00 3.41
824 899 6.039159 GGGAGATGATCAAAAAGGAATGAGTC 59.961 42.308 0.00 0.00 0.00 3.36
825 900 5.890419 GGGAGATGATCAAAAAGGAATGAGT 59.110 40.000 0.00 0.00 0.00 3.41
826 901 5.889853 TGGGAGATGATCAAAAAGGAATGAG 59.110 40.000 0.00 0.00 0.00 2.90
827 902 5.829986 TGGGAGATGATCAAAAAGGAATGA 58.170 37.500 0.00 0.00 0.00 2.57
828 903 6.071221 TGTTGGGAGATGATCAAAAAGGAATG 60.071 38.462 0.00 0.00 0.00 2.67
829 904 6.018469 TGTTGGGAGATGATCAAAAAGGAAT 58.982 36.000 0.00 0.00 0.00 3.01
830 905 5.392995 TGTTGGGAGATGATCAAAAAGGAA 58.607 37.500 0.00 0.00 0.00 3.36
831 906 4.996793 TGTTGGGAGATGATCAAAAAGGA 58.003 39.130 0.00 0.00 0.00 3.36
832 907 5.473039 GTTGTTGGGAGATGATCAAAAAGG 58.527 41.667 0.00 0.00 0.00 3.11
833 908 5.010922 TGGTTGTTGGGAGATGATCAAAAAG 59.989 40.000 0.00 0.00 0.00 2.27
834 909 4.898265 TGGTTGTTGGGAGATGATCAAAAA 59.102 37.500 0.00 0.00 0.00 1.94
835 910 4.478203 TGGTTGTTGGGAGATGATCAAAA 58.522 39.130 0.00 0.00 0.00 2.44
836 911 4.081406 CTGGTTGTTGGGAGATGATCAAA 58.919 43.478 0.00 0.00 0.00 2.69
837 912 3.689347 CTGGTTGTTGGGAGATGATCAA 58.311 45.455 0.00 0.00 0.00 2.57
838 913 2.618816 GCTGGTTGTTGGGAGATGATCA 60.619 50.000 0.00 0.00 0.00 2.92
839 914 2.019984 GCTGGTTGTTGGGAGATGATC 58.980 52.381 0.00 0.00 0.00 2.92
840 915 1.355381 TGCTGGTTGTTGGGAGATGAT 59.645 47.619 0.00 0.00 0.00 2.45
841 916 0.770499 TGCTGGTTGTTGGGAGATGA 59.230 50.000 0.00 0.00 0.00 2.92
842 917 1.747355 GATGCTGGTTGTTGGGAGATG 59.253 52.381 0.00 0.00 0.00 2.90
843 918 1.679944 CGATGCTGGTTGTTGGGAGAT 60.680 52.381 0.00 0.00 0.00 2.75
844 919 0.321564 CGATGCTGGTTGTTGGGAGA 60.322 55.000 0.00 0.00 0.00 3.71
848 923 1.081242 GTGCGATGCTGGTTGTTGG 60.081 57.895 0.00 0.00 0.00 3.77
922 2478 3.036091 CGGGGTGGTCGGGATTATATAT 58.964 50.000 0.00 0.00 0.00 0.86
923 2479 2.225343 ACGGGGTGGTCGGGATTATATA 60.225 50.000 0.00 0.00 0.00 0.86
996 2620 1.687612 CTGGCAGTTCCCCATGTCT 59.312 57.895 6.28 0.00 0.00 3.41
1187 2823 0.759346 GGTTATCCTCGCACCTCCAT 59.241 55.000 0.00 0.00 0.00 3.41
1197 2833 4.102367 AGGAGCTTGATCTTGGTTATCCTC 59.898 45.833 0.00 0.00 28.52 3.71
1309 2976 3.359950 AGGAATCCAATCCAAGAACTGC 58.640 45.455 0.61 0.00 42.27 4.40
1345 3014 4.688879 CCATTGTAAGTTACAGAGCGAACA 59.311 41.667 15.06 0.00 40.24 3.18
1357 3026 8.470002 GGCAAAGATTAATCTCCATTGTAAGTT 58.530 33.333 18.19 2.53 35.76 2.66
1365 3034 5.769835 TCTTGGGCAAAGATTAATCTCCAT 58.230 37.500 18.19 5.61 40.09 3.41
1366 3035 5.191727 TCTTGGGCAAAGATTAATCTCCA 57.808 39.130 18.19 16.96 40.09 3.86
1367 3036 6.530019 TTTCTTGGGCAAAGATTAATCTCC 57.470 37.500 18.19 14.72 44.46 3.71
1368 3037 9.521503 GTATTTTCTTGGGCAAAGATTAATCTC 57.478 33.333 18.19 6.29 44.46 2.75
1369 3038 9.034800 TGTATTTTCTTGGGCAAAGATTAATCT 57.965 29.630 12.37 12.37 44.46 2.40
1370 3039 9.651913 TTGTATTTTCTTGGGCAAAGATTAATC 57.348 29.630 4.89 7.41 44.46 1.75
1372 3041 9.434420 CATTGTATTTTCTTGGGCAAAGATTAA 57.566 29.630 4.89 3.83 44.46 1.40
1373 3042 8.040132 CCATTGTATTTTCTTGGGCAAAGATTA 58.960 33.333 4.89 0.00 44.46 1.75
1374 3043 6.880529 CCATTGTATTTTCTTGGGCAAAGATT 59.119 34.615 4.89 0.00 44.46 2.40
1375 3044 6.213195 TCCATTGTATTTTCTTGGGCAAAGAT 59.787 34.615 4.89 0.00 44.46 2.40
1376 3045 5.541868 TCCATTGTATTTTCTTGGGCAAAGA 59.458 36.000 0.00 0.00 43.37 2.52
1377 3046 5.792741 TCCATTGTATTTTCTTGGGCAAAG 58.207 37.500 0.00 0.00 37.22 2.77
1378 3047 5.541868 TCTCCATTGTATTTTCTTGGGCAAA 59.458 36.000 0.00 0.00 0.00 3.68
1379 3048 5.083122 TCTCCATTGTATTTTCTTGGGCAA 58.917 37.500 0.00 0.00 0.00 4.52
1380 3049 4.671831 TCTCCATTGTATTTTCTTGGGCA 58.328 39.130 0.00 0.00 0.00 5.36
1381 3050 5.859205 ATCTCCATTGTATTTTCTTGGGC 57.141 39.130 0.00 0.00 0.00 5.36
1382 3051 9.971922 GATTAATCTCCATTGTATTTTCTTGGG 57.028 33.333 8.27 0.00 0.00 4.12
1383 3052 9.669353 CGATTAATCTCCATTGTATTTTCTTGG 57.331 33.333 13.45 0.00 0.00 3.61
1386 3055 9.057089 GGTCGATTAATCTCCATTGTATTTTCT 57.943 33.333 13.45 0.00 0.00 2.52
1387 3056 8.836413 TGGTCGATTAATCTCCATTGTATTTTC 58.164 33.333 18.80 0.00 0.00 2.29
1388 3057 8.746052 TGGTCGATTAATCTCCATTGTATTTT 57.254 30.769 18.80 0.00 0.00 1.82
1389 3058 8.746052 TTGGTCGATTAATCTCCATTGTATTT 57.254 30.769 21.50 0.00 31.99 1.40
1390 3059 8.924511 ATTGGTCGATTAATCTCCATTGTATT 57.075 30.769 21.50 7.69 31.99 1.89
1391 3060 8.553459 GATTGGTCGATTAATCTCCATTGTAT 57.447 34.615 21.50 15.19 31.99 2.29
1392 3061 7.962964 GATTGGTCGATTAATCTCCATTGTA 57.037 36.000 21.50 12.34 31.99 2.41
1393 3062 6.867662 GATTGGTCGATTAATCTCCATTGT 57.132 37.500 21.50 14.38 31.99 2.71
1420 3105 0.037697 TTACCTCTGCACGAACGCAT 60.038 50.000 0.00 0.00 42.06 4.73
1454 3139 1.398958 ATCCTCTCCTGCTTCCTCGC 61.399 60.000 0.00 0.00 0.00 5.03
1517 3202 4.728102 CTGTTGTCGCCGCCGGTA 62.728 66.667 4.45 0.00 34.56 4.02
1528 3213 2.433446 CTGGGCCTCTGCTGTTGT 59.567 61.111 4.53 0.00 37.74 3.32
1616 3387 2.747686 GTGCCGGTCCTTCTCCAA 59.252 61.111 1.90 0.00 0.00 3.53
1766 3594 6.612306 GCCAATACCTTGTTCTACTTTTCTG 58.388 40.000 0.00 0.00 0.00 3.02
1807 3650 7.038870 CCTCCAATGGAATAATTAATGCATGGA 60.039 37.037 10.22 14.42 0.00 3.41
1808 3651 7.038870 TCCTCCAATGGAATAATTAATGCATGG 60.039 37.037 8.14 11.01 32.39 3.66
1809 3652 7.898918 TCCTCCAATGGAATAATTAATGCATG 58.101 34.615 8.14 3.77 32.39 4.06
1810 3653 7.731688 ACTCCTCCAATGGAATAATTAATGCAT 59.268 33.333 2.61 1.94 35.43 3.96
1811 3654 7.068702 ACTCCTCCAATGGAATAATTAATGCA 58.931 34.615 2.61 0.00 35.43 3.96
1812 3655 7.530426 ACTCCTCCAATGGAATAATTAATGC 57.470 36.000 2.61 0.00 35.43 3.56
1813 3656 8.721478 CGTACTCCTCCAATGGAATAATTAATG 58.279 37.037 2.61 0.00 35.43 1.90
1814 3657 8.437575 ACGTACTCCTCCAATGGAATAATTAAT 58.562 33.333 2.61 0.00 35.43 1.40
1815 3658 7.798071 ACGTACTCCTCCAATGGAATAATTAA 58.202 34.615 2.61 0.00 35.43 1.40
1816 3659 7.369551 ACGTACTCCTCCAATGGAATAATTA 57.630 36.000 2.61 0.00 35.43 1.40
1817 3660 6.248569 ACGTACTCCTCCAATGGAATAATT 57.751 37.500 2.61 0.00 35.43 1.40
1818 3661 5.888982 ACGTACTCCTCCAATGGAATAAT 57.111 39.130 2.61 0.00 35.43 1.28
1819 3662 5.188163 TGAACGTACTCCTCCAATGGAATAA 59.812 40.000 2.61 0.00 35.43 1.40
1820 3663 4.712829 TGAACGTACTCCTCCAATGGAATA 59.287 41.667 2.61 0.00 35.43 1.75
1821 3664 3.517901 TGAACGTACTCCTCCAATGGAAT 59.482 43.478 2.61 0.00 35.43 3.01
1822 3665 2.901192 TGAACGTACTCCTCCAATGGAA 59.099 45.455 2.61 0.00 35.43 3.53
1823 3666 2.531771 TGAACGTACTCCTCCAATGGA 58.468 47.619 0.48 0.48 34.52 3.41
1824 3667 3.543680 ATGAACGTACTCCTCCAATGG 57.456 47.619 0.00 0.00 0.00 3.16
1825 3668 5.050490 CCTAATGAACGTACTCCTCCAATG 58.950 45.833 0.00 0.00 0.00 2.82
1826 3669 4.443034 GCCTAATGAACGTACTCCTCCAAT 60.443 45.833 0.00 0.00 0.00 3.16
1827 3670 3.118884 GCCTAATGAACGTACTCCTCCAA 60.119 47.826 0.00 0.00 0.00 3.53
1828 3671 2.429610 GCCTAATGAACGTACTCCTCCA 59.570 50.000 0.00 0.00 0.00 3.86
1829 3672 2.543238 CGCCTAATGAACGTACTCCTCC 60.543 54.545 0.00 0.00 0.00 4.30
1830 3673 2.357009 TCGCCTAATGAACGTACTCCTC 59.643 50.000 0.00 0.00 0.00 3.71
1831 3674 2.372264 TCGCCTAATGAACGTACTCCT 58.628 47.619 0.00 0.00 0.00 3.69
1832 3675 2.857592 TCGCCTAATGAACGTACTCC 57.142 50.000 0.00 0.00 0.00 3.85
1833 3676 3.975670 CAGATCGCCTAATGAACGTACTC 59.024 47.826 0.00 0.00 0.00 2.59
1834 3677 3.630769 TCAGATCGCCTAATGAACGTACT 59.369 43.478 0.00 0.00 0.00 2.73
1835 3678 3.961182 TCAGATCGCCTAATGAACGTAC 58.039 45.455 0.00 0.00 0.00 3.67
1841 3684 5.337571 GGGATACATTCAGATCGCCTAATGA 60.338 44.000 14.92 0.00 34.26 2.57
2057 5327 3.494048 GGAAGACCTAGTGATGGATGCAG 60.494 52.174 0.00 0.00 0.00 4.41
2091 5361 5.980715 CCCGTGCGGCTTATTTATTTATTTT 59.019 36.000 4.91 0.00 0.00 1.82
2093 5363 4.581409 ACCCGTGCGGCTTATTTATTTATT 59.419 37.500 4.91 0.00 33.26 1.40
2094 5364 4.139038 ACCCGTGCGGCTTATTTATTTAT 58.861 39.130 4.91 0.00 33.26 1.40
2215 6965 3.274288 CTTGGAGGAGAACATACCAAGC 58.726 50.000 0.00 0.00 46.59 4.01
2320 7070 7.400052 TGTGCTATCATATAGAGAGGGCATTTA 59.600 37.037 0.00 0.00 36.09 1.40
2335 7182 2.299013 GGTGACCCGATGTGCTATCATA 59.701 50.000 0.00 0.00 0.00 2.15
2372 7219 7.390440 TCTTGTTATGAGACATTTAAGTGGGTG 59.610 37.037 2.81 0.00 0.00 4.61
2409 9506 2.630158 CTCATCTTGCCAGTCTTCCTG 58.370 52.381 0.00 0.00 41.15 3.86
2411 9508 2.016096 GCCTCATCTTGCCAGTCTTCC 61.016 57.143 0.00 0.00 0.00 3.46
2417 9514 0.179065 TCATCGCCTCATCTTGCCAG 60.179 55.000 0.00 0.00 0.00 4.85
2588 9692 4.340097 CCGTGTCCTTATACCATCACACTA 59.660 45.833 0.00 0.00 33.46 2.74
2723 9837 1.269448 TGCCGAGGCTTCACAATTTTC 59.731 47.619 15.75 0.00 42.51 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.