Multiple sequence alignment - TraesCS2B01G098900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G098900 chr2B 100.000 2953 0 0 1 2953 58688346 58691298 0.000000e+00 5454.0
1 TraesCS2B01G098900 chr2B 94.143 461 15 7 1 453 770500511 770500055 0.000000e+00 691.0
2 TraesCS2B01G098900 chr2B 80.942 955 108 43 889 1805 58825999 58826917 0.000000e+00 688.0
3 TraesCS2B01G098900 chr2B 89.002 491 34 7 895 1380 58773222 58773697 9.120000e-165 590.0
4 TraesCS2B01G098900 chr2B 83.615 592 66 21 1086 1661 58791520 58792096 7.250000e-146 527.0
5 TraesCS2B01G098900 chr2B 88.785 428 25 6 501 910 58772784 58773206 1.220000e-138 503.0
6 TraesCS2B01G098900 chr2B 88.729 417 34 5 1453 1863 58773803 58774212 5.680000e-137 497.0
7 TraesCS2B01G098900 chr2B 80.788 203 18 12 1626 1819 58835017 58835207 3.970000e-29 139.0
8 TraesCS2B01G098900 chr2B 94.737 38 1 1 537 574 625236802 625236766 1.140000e-04 58.4
9 TraesCS2B01G098900 chr5A 93.981 1080 59 4 1875 2953 643459715 643460789 0.000000e+00 1629.0
10 TraesCS2B01G098900 chr5A 93.486 1090 64 5 1865 2953 619773053 619774136 0.000000e+00 1613.0
11 TraesCS2B01G098900 chr5A 92.491 1092 68 5 1875 2953 327927864 327928954 0.000000e+00 1550.0
12 TraesCS2B01G098900 chr5A 100.000 29 0 0 579 607 32882698 32882726 1.000000e-03 54.7
13 TraesCS2B01G098900 chr1D 93.676 1091 62 6 1868 2953 139116459 139117547 0.000000e+00 1626.0
14 TraesCS2B01G098900 chr4D 93.426 1080 59 4 1875 2953 502106496 502107564 0.000000e+00 1591.0
15 TraesCS2B01G098900 chr4D 96.226 53 2 0 1089 1141 430794722 430794670 1.460000e-13 87.9
16 TraesCS2B01G098900 chr4D 100.000 29 0 0 578 606 73222293 73222265 1.000000e-03 54.7
17 TraesCS2B01G098900 chr3D 93.432 1081 58 5 1875 2953 431339164 431338095 0.000000e+00 1591.0
18 TraesCS2B01G098900 chr3D 90.476 42 4 0 533 574 443429093 443429134 4.110000e-04 56.5
19 TraesCS2B01G098900 chr2A 92.707 1097 68 8 1862 2953 704736491 704737580 0.000000e+00 1572.0
20 TraesCS2B01G098900 chr2A 82.545 951 115 31 874 1813 38811948 38812858 0.000000e+00 789.0
21 TraesCS2B01G098900 chr2A 86.535 505 30 14 874 1374 38754856 38755326 3.370000e-144 521.0
22 TraesCS2B01G098900 chr2A 84.739 498 48 18 902 1374 38908440 38908934 9.580000e-130 473.0
23 TraesCS2B01G098900 chr2A 88.579 394 29 5 1484 1871 38755413 38755796 5.760000e-127 464.0
24 TraesCS2B01G098900 chr2A 85.138 471 50 11 923 1374 38878791 38879260 5.760000e-127 464.0
25 TraesCS2B01G098900 chr2A 83.871 372 39 14 1453 1818 38909008 38909364 4.720000e-88 335.0
26 TraesCS2B01G098900 chr2A 89.610 231 16 3 625 850 38754552 38754779 1.340000e-73 287.0
27 TraesCS2B01G098900 chr2A 87.013 231 18 4 629 850 38811644 38811871 1.760000e-62 250.0
28 TraesCS2B01G098900 chr2A 82.990 194 14 3 458 637 38811191 38811379 1.100000e-34 158.0
29 TraesCS2B01G098900 chr2A 94.737 38 2 0 537 574 672743618 672743581 3.180000e-05 60.2
30 TraesCS2B01G098900 chr2D 92.705 1083 72 5 1876 2953 469740695 469741775 0.000000e+00 1555.0
31 TraesCS2B01G098900 chr2D 87.721 1018 72 20 874 1863 35531636 35532628 0.000000e+00 1138.0
32 TraesCS2B01G098900 chr2D 83.584 798 76 32 1085 1871 35564373 35565126 0.000000e+00 697.0
33 TraesCS2B01G098900 chr2D 87.207 555 43 14 1344 1871 42075420 42074867 9.050000e-170 606.0
34 TraesCS2B01G098900 chr2D 82.633 714 89 23 1083 1789 35639069 35639754 1.510000e-167 599.0
35 TraesCS2B01G098900 chr2D 81.746 756 90 28 1085 1818 35677846 35678575 3.280000e-164 588.0
36 TraesCS2B01G098900 chr2D 88.969 417 19 10 453 850 35531151 35531559 9.510000e-135 490.0
37 TraesCS2B01G098900 chr2D 83.668 398 38 13 457 852 42092290 42091918 1.680000e-92 350.0
38 TraesCS2B01G098900 chr2D 90.991 222 12 6 1133 1349 42076260 42076042 2.880000e-75 292.0
39 TraesCS2B01G098900 chr2D 90.517 116 10 1 1142 1256 605102523 605102408 5.100000e-33 152.0
40 TraesCS2B01G098900 chr2D 75.676 185 28 13 902 1073 35564141 35564321 3.160000e-10 76.8
41 TraesCS2B01G098900 chr2D 100.000 29 0 0 579 607 636493068 636493096 1.000000e-03 54.7
42 TraesCS2B01G098900 chr7B 92.778 1080 62 10 1875 2953 568098431 568097367 0.000000e+00 1548.0
43 TraesCS2B01G098900 chr7B 92.918 466 19 7 1 452 649132655 649132190 0.000000e+00 665.0
44 TraesCS2B01G098900 chr7B 93.732 351 10 3 111 449 655347770 655348120 1.570000e-142 516.0
45 TraesCS2B01G098900 chr7B 93.123 349 18 3 111 453 18031445 18031793 9.440000e-140 507.0
46 TraesCS2B01G098900 chr3B 94.967 457 15 3 1 449 805409076 805409532 0.000000e+00 710.0
47 TraesCS2B01G098900 chr3B 90.476 42 4 0 533 574 581132814 581132855 4.110000e-04 56.5
48 TraesCS2B01G098900 chr5B 94.409 465 13 2 1 452 461575522 461575986 0.000000e+00 702.0
49 TraesCS2B01G098900 chr5B 98.571 140 2 0 1 140 594902636 594902775 6.320000e-62 248.0
50 TraesCS2B01G098900 chr5B 98.571 140 2 0 1 140 643006657 643006796 6.320000e-62 248.0
51 TraesCS2B01G098900 chr1B 93.418 471 16 3 1 456 29667036 29666566 0.000000e+00 684.0
52 TraesCS2B01G098900 chr1B 92.888 464 21 6 1 453 671448551 671449013 0.000000e+00 664.0
53 TraesCS2B01G098900 chr4B 88.843 484 22 14 1 452 421550683 421550200 1.540000e-157 566.0
54 TraesCS2B01G098900 chr4B 98.571 140 2 0 1 140 594392868 594393007 6.320000e-62 248.0
55 TraesCS2B01G098900 chr4B 96.364 55 2 0 1087 1141 529298353 529298299 1.130000e-14 91.6
56 TraesCS2B01G098900 chr4B 100.000 29 0 0 578 606 106035826 106035854 1.000000e-03 54.7
57 TraesCS2B01G098900 chr4B 100.000 28 0 0 579 606 106035795 106035768 5.000000e-03 52.8
58 TraesCS2B01G098900 chrUn 93.391 348 18 3 111 453 394863383 394863036 7.300000e-141 510.0
59 TraesCS2B01G098900 chr4A 96.226 53 2 0 1089 1141 32462955 32462903 1.460000e-13 87.9
60 TraesCS2B01G098900 chr4A 100.000 29 0 0 578 606 514413341 514413369 1.000000e-03 54.7
61 TraesCS2B01G098900 chr6B 94.737 38 2 0 537 574 44247284 44247247 3.180000e-05 60.2
62 TraesCS2B01G098900 chr6B 100.000 29 0 0 579 607 637025281 637025253 1.000000e-03 54.7
63 TraesCS2B01G098900 chr7D 97.059 34 0 1 579 612 126475492 126475524 4.110000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G098900 chr2B 58688346 58691298 2952 False 5454.0 5454 100.000000 1 2953 1 chr2B.!!$F1 2952
1 TraesCS2B01G098900 chr2B 58825999 58826917 918 False 688.0 688 80.942000 889 1805 1 chr2B.!!$F3 916
2 TraesCS2B01G098900 chr2B 58772784 58774212 1428 False 530.0 590 88.838667 501 1863 3 chr2B.!!$F5 1362
3 TraesCS2B01G098900 chr2B 58791520 58792096 576 False 527.0 527 83.615000 1086 1661 1 chr2B.!!$F2 575
4 TraesCS2B01G098900 chr5A 643459715 643460789 1074 False 1629.0 1629 93.981000 1875 2953 1 chr5A.!!$F4 1078
5 TraesCS2B01G098900 chr5A 619773053 619774136 1083 False 1613.0 1613 93.486000 1865 2953 1 chr5A.!!$F3 1088
6 TraesCS2B01G098900 chr5A 327927864 327928954 1090 False 1550.0 1550 92.491000 1875 2953 1 chr5A.!!$F2 1078
7 TraesCS2B01G098900 chr1D 139116459 139117547 1088 False 1626.0 1626 93.676000 1868 2953 1 chr1D.!!$F1 1085
8 TraesCS2B01G098900 chr4D 502106496 502107564 1068 False 1591.0 1591 93.426000 1875 2953 1 chr4D.!!$F1 1078
9 TraesCS2B01G098900 chr3D 431338095 431339164 1069 True 1591.0 1591 93.432000 1875 2953 1 chr3D.!!$R1 1078
10 TraesCS2B01G098900 chr2A 704736491 704737580 1089 False 1572.0 1572 92.707000 1862 2953 1 chr2A.!!$F2 1091
11 TraesCS2B01G098900 chr2A 38754552 38755796 1244 False 424.0 521 88.241333 625 1871 3 chr2A.!!$F3 1246
12 TraesCS2B01G098900 chr2A 38908440 38909364 924 False 404.0 473 84.305000 902 1818 2 chr2A.!!$F5 916
13 TraesCS2B01G098900 chr2A 38811191 38812858 1667 False 399.0 789 84.182667 458 1813 3 chr2A.!!$F4 1355
14 TraesCS2B01G098900 chr2D 469740695 469741775 1080 False 1555.0 1555 92.705000 1876 2953 1 chr2D.!!$F3 1077
15 TraesCS2B01G098900 chr2D 35531151 35532628 1477 False 814.0 1138 88.345000 453 1863 2 chr2D.!!$F5 1410
16 TraesCS2B01G098900 chr2D 35639069 35639754 685 False 599.0 599 82.633000 1083 1789 1 chr2D.!!$F1 706
17 TraesCS2B01G098900 chr2D 35677846 35678575 729 False 588.0 588 81.746000 1085 1818 1 chr2D.!!$F2 733
18 TraesCS2B01G098900 chr2D 42074867 42076260 1393 True 449.0 606 89.099000 1133 1871 2 chr2D.!!$R3 738
19 TraesCS2B01G098900 chr2D 35564141 35565126 985 False 386.9 697 79.630000 902 1871 2 chr2D.!!$F6 969
20 TraesCS2B01G098900 chr7B 568097367 568098431 1064 True 1548.0 1548 92.778000 1875 2953 1 chr7B.!!$R1 1078

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 450 0.03759 ATTGCCCGGTTCTGCACTAA 59.962 50.0 0.0 0.0 37.18 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2302 3562 0.673022 AGCAGCAGTAGCAGAAGCAC 60.673 55.0 0.0 0.0 45.49 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.923414 AATTAGTACTTGTCCTTTCATGTCC 57.077 36.000 0.00 0.00 0.00 4.02
27 28 4.974645 AGTACTTGTCCTTTCATGTCCA 57.025 40.909 0.00 0.00 0.00 4.02
28 29 5.505181 AGTACTTGTCCTTTCATGTCCAT 57.495 39.130 0.00 0.00 0.00 3.41
29 30 5.248640 AGTACTTGTCCTTTCATGTCCATG 58.751 41.667 0.71 0.71 40.09 3.66
30 31 4.104383 ACTTGTCCTTTCATGTCCATGT 57.896 40.909 7.13 0.00 39.72 3.21
31 32 4.473444 ACTTGTCCTTTCATGTCCATGTT 58.527 39.130 7.13 0.00 39.72 2.71
32 33 4.520492 ACTTGTCCTTTCATGTCCATGTTC 59.480 41.667 7.13 0.00 39.72 3.18
33 34 4.371624 TGTCCTTTCATGTCCATGTTCT 57.628 40.909 7.13 0.00 39.72 3.01
34 35 4.728772 TGTCCTTTCATGTCCATGTTCTT 58.271 39.130 7.13 0.00 39.72 2.52
35 36 4.761739 TGTCCTTTCATGTCCATGTTCTTC 59.238 41.667 7.13 0.00 39.72 2.87
36 37 4.002982 TCCTTTCATGTCCATGTTCTTCG 58.997 43.478 7.13 0.00 39.72 3.79
37 38 3.753272 CCTTTCATGTCCATGTTCTTCGT 59.247 43.478 7.13 0.00 39.72 3.85
38 39 4.216257 CCTTTCATGTCCATGTTCTTCGTT 59.784 41.667 7.13 0.00 39.72 3.85
39 40 5.356882 TTTCATGTCCATGTTCTTCGTTC 57.643 39.130 7.13 0.00 39.72 3.95
40 41 4.271696 TCATGTCCATGTTCTTCGTTCT 57.728 40.909 7.13 0.00 39.72 3.01
41 42 3.996363 TCATGTCCATGTTCTTCGTTCTG 59.004 43.478 7.13 0.00 39.72 3.02
42 43 3.744238 TGTCCATGTTCTTCGTTCTGA 57.256 42.857 0.00 0.00 0.00 3.27
43 44 4.066646 TGTCCATGTTCTTCGTTCTGAA 57.933 40.909 0.00 0.00 34.74 3.02
44 45 3.807622 TGTCCATGTTCTTCGTTCTGAAC 59.192 43.478 10.48 10.48 41.87 3.18
45 46 4.058817 GTCCATGTTCTTCGTTCTGAACT 58.941 43.478 17.60 0.00 41.99 3.01
46 47 4.511826 GTCCATGTTCTTCGTTCTGAACTT 59.488 41.667 17.60 0.00 41.99 2.66
47 48 5.694910 GTCCATGTTCTTCGTTCTGAACTTA 59.305 40.000 17.60 3.94 41.99 2.24
48 49 6.202188 GTCCATGTTCTTCGTTCTGAACTTAA 59.798 38.462 17.60 10.90 41.99 1.85
49 50 6.423905 TCCATGTTCTTCGTTCTGAACTTAAG 59.576 38.462 17.60 18.28 41.99 1.85
50 51 6.202954 CCATGTTCTTCGTTCTGAACTTAAGT 59.797 38.462 21.58 1.12 41.99 2.24
51 52 6.583912 TGTTCTTCGTTCTGAACTTAAGTG 57.416 37.500 21.58 0.00 41.99 3.16
52 53 6.334989 TGTTCTTCGTTCTGAACTTAAGTGA 58.665 36.000 21.58 0.00 41.99 3.41
53 54 6.984474 TGTTCTTCGTTCTGAACTTAAGTGAT 59.016 34.615 21.58 0.00 41.99 3.06
54 55 7.494625 TGTTCTTCGTTCTGAACTTAAGTGATT 59.505 33.333 21.58 0.00 41.99 2.57
55 56 8.336080 GTTCTTCGTTCTGAACTTAAGTGATTT 58.664 33.333 21.58 0.00 39.36 2.17
56 57 7.851508 TCTTCGTTCTGAACTTAAGTGATTTG 58.148 34.615 21.58 0.00 31.87 2.32
57 58 5.985781 TCGTTCTGAACTTAAGTGATTTGC 58.014 37.500 17.60 0.00 0.00 3.68
58 59 5.758296 TCGTTCTGAACTTAAGTGATTTGCT 59.242 36.000 17.60 0.00 0.00 3.91
59 60 6.260050 TCGTTCTGAACTTAAGTGATTTGCTT 59.740 34.615 17.60 0.00 0.00 3.91
60 61 6.912591 CGTTCTGAACTTAAGTGATTTGCTTT 59.087 34.615 17.60 0.00 0.00 3.51
61 62 7.432252 CGTTCTGAACTTAAGTGATTTGCTTTT 59.568 33.333 17.60 0.00 0.00 2.27
62 63 8.534778 GTTCTGAACTTAAGTGATTTGCTTTTG 58.465 33.333 9.34 0.00 0.00 2.44
63 64 7.771183 TCTGAACTTAAGTGATTTGCTTTTGT 58.229 30.769 9.34 0.00 0.00 2.83
64 65 7.701924 TCTGAACTTAAGTGATTTGCTTTTGTG 59.298 33.333 9.34 0.00 0.00 3.33
65 66 6.756074 TGAACTTAAGTGATTTGCTTTTGTGG 59.244 34.615 9.34 0.00 0.00 4.17
66 67 6.220726 ACTTAAGTGATTTGCTTTTGTGGT 57.779 33.333 7.48 0.00 0.00 4.16
67 68 6.042143 ACTTAAGTGATTTGCTTTTGTGGTG 58.958 36.000 7.48 0.00 0.00 4.17
68 69 4.470334 AAGTGATTTGCTTTTGTGGTGT 57.530 36.364 0.00 0.00 0.00 4.16
69 70 4.470334 AGTGATTTGCTTTTGTGGTGTT 57.530 36.364 0.00 0.00 0.00 3.32
70 71 5.590530 AGTGATTTGCTTTTGTGGTGTTA 57.409 34.783 0.00 0.00 0.00 2.41
71 72 6.160576 AGTGATTTGCTTTTGTGGTGTTAT 57.839 33.333 0.00 0.00 0.00 1.89
72 73 7.283625 AGTGATTTGCTTTTGTGGTGTTATA 57.716 32.000 0.00 0.00 0.00 0.98
73 74 7.895759 AGTGATTTGCTTTTGTGGTGTTATAT 58.104 30.769 0.00 0.00 0.00 0.86
74 75 9.019656 AGTGATTTGCTTTTGTGGTGTTATATA 57.980 29.630 0.00 0.00 0.00 0.86
75 76 9.801873 GTGATTTGCTTTTGTGGTGTTATATAT 57.198 29.630 0.00 0.00 0.00 0.86
76 77 9.800433 TGATTTGCTTTTGTGGTGTTATATATG 57.200 29.630 0.00 0.00 0.00 1.78
79 80 9.632807 TTTGCTTTTGTGGTGTTATATATGAAC 57.367 29.630 0.00 0.00 0.00 3.18
80 81 7.468441 TGCTTTTGTGGTGTTATATATGAACG 58.532 34.615 0.00 0.00 0.00 3.95
81 82 6.413818 GCTTTTGTGGTGTTATATATGAACGC 59.586 38.462 0.00 7.14 36.73 4.84
82 83 7.618502 TTTTGTGGTGTTATATATGAACGCT 57.381 32.000 12.78 0.00 37.44 5.07
83 84 7.618502 TTTGTGGTGTTATATATGAACGCTT 57.381 32.000 12.78 0.00 37.44 4.68
84 85 8.719560 TTTGTGGTGTTATATATGAACGCTTA 57.280 30.769 12.78 3.97 37.44 3.09
85 86 8.896320 TTGTGGTGTTATATATGAACGCTTAT 57.104 30.769 12.78 0.00 37.44 1.73
86 87 9.984190 TTGTGGTGTTATATATGAACGCTTATA 57.016 29.630 12.78 0.00 37.44 0.98
98 99 7.967890 ATGAACGCTTATATCATGACAATCA 57.032 32.000 0.00 0.00 32.77 2.57
99 100 7.967890 TGAACGCTTATATCATGACAATCAT 57.032 32.000 0.00 0.00 37.65 2.45
110 111 5.535043 CATGACAATCATGTTGAACTCGA 57.465 39.130 10.11 0.00 46.80 4.04
111 112 6.115450 CATGACAATCATGTTGAACTCGAT 57.885 37.500 10.11 0.00 46.80 3.59
112 113 5.535043 TGACAATCATGTTGAACTCGATG 57.465 39.130 12.90 0.00 40.74 3.84
113 114 5.237048 TGACAATCATGTTGAACTCGATGA 58.763 37.500 12.90 0.00 40.74 2.92
114 115 5.876460 TGACAATCATGTTGAACTCGATGAT 59.124 36.000 12.90 4.38 40.74 2.45
115 116 6.372381 TGACAATCATGTTGAACTCGATGATT 59.628 34.615 13.43 13.43 43.24 2.57
117 118 6.990341 AATCATGTTGAACTCGATGATTGA 57.010 33.333 16.67 1.49 41.70 2.57
118 119 7.563888 AATCATGTTGAACTCGATGATTGAT 57.436 32.000 16.67 0.10 41.70 2.57
119 120 6.990341 TCATGTTGAACTCGATGATTGATT 57.010 33.333 0.00 0.00 0.00 2.57
120 121 7.008440 TCATGTTGAACTCGATGATTGATTC 57.992 36.000 0.00 0.00 0.00 2.52
121 122 6.820152 TCATGTTGAACTCGATGATTGATTCT 59.180 34.615 0.00 0.00 0.00 2.40
122 123 7.981225 TCATGTTGAACTCGATGATTGATTCTA 59.019 33.333 0.00 0.00 0.00 2.10
123 124 7.525688 TGTTGAACTCGATGATTGATTCTAC 57.474 36.000 0.00 9.85 0.00 2.59
124 125 7.323420 TGTTGAACTCGATGATTGATTCTACT 58.677 34.615 0.00 0.00 0.00 2.57
125 126 8.466798 TGTTGAACTCGATGATTGATTCTACTA 58.533 33.333 0.00 5.38 0.00 1.82
126 127 8.963130 GTTGAACTCGATGATTGATTCTACTAG 58.037 37.037 0.00 0.00 0.00 2.57
127 128 8.451908 TGAACTCGATGATTGATTCTACTAGA 57.548 34.615 0.00 0.00 0.00 2.43
128 129 8.903820 TGAACTCGATGATTGATTCTACTAGAA 58.096 33.333 0.00 0.86 38.78 2.10
129 130 9.737427 GAACTCGATGATTGATTCTACTAGAAA 57.263 33.333 2.56 0.00 37.82 2.52
160 161 9.983804 ATATATCGTGTACAATGTGTAGTATCG 57.016 33.333 0.00 0.00 32.84 2.92
161 162 5.550232 TCGTGTACAATGTGTAGTATCGT 57.450 39.130 0.00 0.00 32.84 3.73
162 163 6.660887 TCGTGTACAATGTGTAGTATCGTA 57.339 37.500 0.00 0.00 32.84 3.43
163 164 7.071014 TCGTGTACAATGTGTAGTATCGTAA 57.929 36.000 0.00 0.00 32.84 3.18
164 165 7.525759 TCGTGTACAATGTGTAGTATCGTAAA 58.474 34.615 0.00 0.00 32.84 2.01
165 166 8.020244 TCGTGTACAATGTGTAGTATCGTAAAA 58.980 33.333 0.00 0.00 32.84 1.52
166 167 8.800972 CGTGTACAATGTGTAGTATCGTAAAAT 58.199 33.333 0.00 0.00 32.84 1.82
172 173 9.632969 CAATGTGTAGTATCGTAAAATACAAGC 57.367 33.333 0.00 0.00 35.06 4.01
173 174 8.936070 ATGTGTAGTATCGTAAAATACAAGCA 57.064 30.769 0.00 0.00 35.06 3.91
174 175 8.760103 TGTGTAGTATCGTAAAATACAAGCAA 57.240 30.769 0.00 0.00 35.06 3.91
175 176 9.205719 TGTGTAGTATCGTAAAATACAAGCAAA 57.794 29.630 0.00 0.00 35.06 3.68
176 177 9.469239 GTGTAGTATCGTAAAATACAAGCAAAC 57.531 33.333 0.00 0.00 35.06 2.93
177 178 8.374728 TGTAGTATCGTAAAATACAAGCAAACG 58.625 33.333 0.00 0.00 35.06 3.60
178 179 7.585286 AGTATCGTAAAATACAAGCAAACGA 57.415 32.000 0.00 0.00 41.45 3.85
179 180 8.020861 AGTATCGTAAAATACAAGCAAACGAA 57.979 30.769 0.00 0.00 40.71 3.85
180 181 8.497554 AGTATCGTAAAATACAAGCAAACGAAA 58.502 29.630 0.00 0.00 40.71 3.46
181 182 9.105206 GTATCGTAAAATACAAGCAAACGAAAA 57.895 29.630 0.00 0.00 40.71 2.29
182 183 7.966157 TCGTAAAATACAAGCAAACGAAAAA 57.034 28.000 0.00 0.00 35.23 1.94
183 184 8.041395 TCGTAAAATACAAGCAAACGAAAAAG 57.959 30.769 0.00 0.00 35.23 2.27
184 185 7.909121 TCGTAAAATACAAGCAAACGAAAAAGA 59.091 29.630 0.00 0.00 35.23 2.52
185 186 8.525071 CGTAAAATACAAGCAAACGAAAAAGAA 58.475 29.630 0.00 0.00 0.00 2.52
193 194 9.701355 ACAAGCAAACGAAAAAGAATTAAAATG 57.299 25.926 0.00 0.00 0.00 2.32
194 195 9.913451 CAAGCAAACGAAAAAGAATTAAAATGA 57.087 25.926 0.00 0.00 0.00 2.57
256 257 6.822667 AAAAACCAAACCTTATAGTACCGG 57.177 37.500 0.00 0.00 0.00 5.28
257 258 5.503634 AAACCAAACCTTATAGTACCGGT 57.496 39.130 13.98 13.98 0.00 5.28
258 259 5.503634 AACCAAACCTTATAGTACCGGTT 57.496 39.130 15.04 0.00 41.25 4.44
259 260 4.835678 ACCAAACCTTATAGTACCGGTTG 58.164 43.478 15.04 0.00 39.53 3.77
260 261 4.193865 CCAAACCTTATAGTACCGGTTGG 58.806 47.826 15.04 5.65 39.53 3.77
284 285 0.325933 ACCAACCGGTACTAAAGGGC 59.674 55.000 8.00 0.00 46.71 5.19
285 286 0.616891 CCAACCGGTACTAAAGGGCT 59.383 55.000 8.00 0.00 0.00 5.19
286 287 1.406477 CCAACCGGTACTAAAGGGCTC 60.406 57.143 8.00 0.00 0.00 4.70
287 288 0.907486 AACCGGTACTAAAGGGCTCC 59.093 55.000 8.00 0.00 0.00 4.70
288 289 0.252375 ACCGGTACTAAAGGGCTCCA 60.252 55.000 4.49 0.00 0.00 3.86
289 290 0.464452 CCGGTACTAAAGGGCTCCAG 59.536 60.000 0.00 0.00 0.00 3.86
290 291 0.464452 CGGTACTAAAGGGCTCCAGG 59.536 60.000 0.00 0.00 0.00 4.45
291 292 0.180642 GGTACTAAAGGGCTCCAGGC 59.819 60.000 0.00 0.00 40.90 4.85
320 321 4.012895 GCTCGTGCCACGTGGTTG 62.013 66.667 33.92 23.28 43.14 3.77
321 322 4.012895 CTCGTGCCACGTGGTTGC 62.013 66.667 33.92 20.95 43.14 4.17
324 325 3.216292 GTGCCACGTGGTTGCCTT 61.216 61.111 33.92 0.00 37.57 4.35
325 326 2.441164 TGCCACGTGGTTGCCTTT 60.441 55.556 33.92 0.00 37.57 3.11
326 327 2.055042 TGCCACGTGGTTGCCTTTT 61.055 52.632 33.92 0.00 37.57 2.27
327 328 0.752009 TGCCACGTGGTTGCCTTTTA 60.752 50.000 33.92 8.23 37.57 1.52
328 329 0.039527 GCCACGTGGTTGCCTTTTAG 60.040 55.000 33.92 6.07 37.57 1.85
329 330 0.039527 CCACGTGGTTGCCTTTTAGC 60.040 55.000 26.95 0.00 0.00 3.09
330 331 0.665835 CACGTGGTTGCCTTTTAGCA 59.334 50.000 7.95 0.00 42.17 3.49
331 332 0.666374 ACGTGGTTGCCTTTTAGCAC 59.334 50.000 0.00 0.00 43.97 4.40
332 333 0.039527 CGTGGTTGCCTTTTAGCACC 60.040 55.000 0.00 0.00 43.97 5.01
333 334 0.039527 GTGGTTGCCTTTTAGCACCG 60.040 55.000 0.00 0.00 43.97 4.94
334 335 1.175983 TGGTTGCCTTTTAGCACCGG 61.176 55.000 0.00 0.00 43.97 5.28
335 336 1.176619 GGTTGCCTTTTAGCACCGGT 61.177 55.000 0.00 0.00 43.97 5.28
336 337 0.671796 GTTGCCTTTTAGCACCGGTT 59.328 50.000 2.97 0.00 43.97 4.44
337 338 0.955905 TTGCCTTTTAGCACCGGTTC 59.044 50.000 2.97 0.00 43.97 3.62
338 339 1.231958 TGCCTTTTAGCACCGGTTCG 61.232 55.000 2.97 0.00 38.00 3.95
339 340 1.232621 GCCTTTTAGCACCGGTTCGT 61.233 55.000 2.97 0.00 0.00 3.85
340 341 0.515564 CCTTTTAGCACCGGTTCGTG 59.484 55.000 2.97 0.00 36.80 4.35
352 353 4.659480 TTCGTGCTGAACCGGTAC 57.341 55.556 8.00 0.00 0.00 3.34
353 354 2.043625 TTCGTGCTGAACCGGTACT 58.956 52.632 8.00 0.00 0.00 2.73
354 355 1.246649 TTCGTGCTGAACCGGTACTA 58.753 50.000 8.00 0.00 0.00 1.82
355 356 1.246649 TCGTGCTGAACCGGTACTAA 58.753 50.000 8.00 0.00 0.00 2.24
356 357 1.612950 TCGTGCTGAACCGGTACTAAA 59.387 47.619 8.00 0.00 0.00 1.85
357 358 1.990563 CGTGCTGAACCGGTACTAAAG 59.009 52.381 8.00 2.29 0.00 1.85
358 359 2.344025 GTGCTGAACCGGTACTAAAGG 58.656 52.381 8.00 0.00 0.00 3.11
359 360 1.276989 TGCTGAACCGGTACTAAAGGG 59.723 52.381 8.00 0.00 0.00 3.95
360 361 1.406477 GCTGAACCGGTACTAAAGGGG 60.406 57.143 8.00 0.00 0.00 4.79
361 362 1.208776 CTGAACCGGTACTAAAGGGGG 59.791 57.143 8.00 0.00 0.00 5.40
377 378 4.736739 GGGGGCTTTAGTGACCAC 57.263 61.111 0.00 0.00 0.00 4.16
378 379 1.765074 GGGGGCTTTAGTGACCACA 59.235 57.895 2.78 0.00 0.00 4.17
379 380 0.111639 GGGGGCTTTAGTGACCACAA 59.888 55.000 2.78 0.00 0.00 3.33
380 381 1.272480 GGGGGCTTTAGTGACCACAAT 60.272 52.381 2.78 0.00 0.00 2.71
381 382 2.525368 GGGGCTTTAGTGACCACAATT 58.475 47.619 2.78 0.00 0.00 2.32
382 383 2.897326 GGGGCTTTAGTGACCACAATTT 59.103 45.455 2.78 0.00 0.00 1.82
383 384 4.083565 GGGGCTTTAGTGACCACAATTTA 58.916 43.478 2.78 0.00 0.00 1.40
384 385 4.157840 GGGGCTTTAGTGACCACAATTTAG 59.842 45.833 2.78 0.00 0.00 1.85
385 386 4.765339 GGGCTTTAGTGACCACAATTTAGT 59.235 41.667 2.78 0.00 0.00 2.24
386 387 5.335661 GGGCTTTAGTGACCACAATTTAGTG 60.336 44.000 2.78 0.00 39.21 2.74
387 388 5.154222 GCTTTAGTGACCACAATTTAGTGC 58.846 41.667 2.78 0.00 38.18 4.40
388 389 5.699097 TTTAGTGACCACAATTTAGTGCC 57.301 39.130 2.78 0.00 38.18 5.01
389 390 2.151202 AGTGACCACAATTTAGTGCCG 58.849 47.619 2.78 0.00 38.18 5.69
390 391 2.147958 GTGACCACAATTTAGTGCCGA 58.852 47.619 0.00 0.00 38.18 5.54
391 392 2.747446 GTGACCACAATTTAGTGCCGAT 59.253 45.455 0.00 0.00 38.18 4.18
392 393 3.190535 GTGACCACAATTTAGTGCCGATT 59.809 43.478 0.00 0.00 38.18 3.34
393 394 4.393680 GTGACCACAATTTAGTGCCGATTA 59.606 41.667 0.00 0.00 38.18 1.75
394 395 5.065988 GTGACCACAATTTAGTGCCGATTAT 59.934 40.000 0.00 0.00 38.18 1.28
395 396 5.065859 TGACCACAATTTAGTGCCGATTATG 59.934 40.000 0.00 0.00 38.18 1.90
396 397 4.947388 ACCACAATTTAGTGCCGATTATGT 59.053 37.500 0.00 0.00 38.18 2.29
397 398 6.116806 ACCACAATTTAGTGCCGATTATGTA 58.883 36.000 0.00 0.00 38.18 2.29
398 399 6.600032 ACCACAATTTAGTGCCGATTATGTAA 59.400 34.615 0.00 0.00 38.18 2.41
399 400 6.910433 CCACAATTTAGTGCCGATTATGTAAC 59.090 38.462 0.00 0.00 38.18 2.50
400 401 6.910433 CACAATTTAGTGCCGATTATGTAACC 59.090 38.462 0.00 0.00 32.04 2.85
401 402 5.917541 ATTTAGTGCCGATTATGTAACCG 57.082 39.130 0.00 0.00 0.00 4.44
402 403 2.234300 AGTGCCGATTATGTAACCGG 57.766 50.000 0.00 0.00 44.34 5.28
406 407 2.234300 CCGATTATGTAACCGGCACT 57.766 50.000 0.00 0.00 35.29 4.40
407 408 3.374220 CCGATTATGTAACCGGCACTA 57.626 47.619 0.00 0.00 35.29 2.74
408 409 3.719924 CCGATTATGTAACCGGCACTAA 58.280 45.455 0.00 1.68 35.29 2.24
409 410 4.121317 CCGATTATGTAACCGGCACTAAA 58.879 43.478 0.00 0.00 35.29 1.85
410 411 4.210537 CCGATTATGTAACCGGCACTAAAG 59.789 45.833 0.00 1.17 35.29 1.85
411 412 4.210537 CGATTATGTAACCGGCACTAAAGG 59.789 45.833 0.00 0.00 0.00 3.11
412 413 2.413310 ATGTAACCGGCACTAAAGGG 57.587 50.000 0.00 0.00 0.00 3.95
413 414 0.321830 TGTAACCGGCACTAAAGGGC 60.322 55.000 0.00 0.00 0.00 5.19
414 415 1.028330 GTAACCGGCACTAAAGGGCC 61.028 60.000 13.51 13.51 46.80 5.80
419 420 2.776659 GGCACTAAAGGGCCTTACG 58.223 57.895 21.25 15.66 46.74 3.18
420 421 0.251073 GGCACTAAAGGGCCTTACGA 59.749 55.000 21.25 7.25 46.74 3.43
421 422 1.339342 GGCACTAAAGGGCCTTACGAA 60.339 52.381 21.25 4.81 46.74 3.85
422 423 1.736126 GCACTAAAGGGCCTTACGAAC 59.264 52.381 21.25 5.99 0.00 3.95
423 424 2.353323 CACTAAAGGGCCTTACGAACC 58.647 52.381 21.25 0.00 0.00 3.62
424 425 1.066645 ACTAAAGGGCCTTACGAACCG 60.067 52.381 21.25 5.60 0.00 4.44
425 426 0.249955 TAAAGGGCCTTACGAACCGG 59.750 55.000 21.25 0.00 0.00 5.28
426 427 1.771783 AAAGGGCCTTACGAACCGGT 61.772 55.000 21.25 0.00 0.00 5.28
427 428 2.435410 GGGCCTTACGAACCGGTG 60.435 66.667 8.52 0.00 0.00 4.94
428 429 3.122971 GGCCTTACGAACCGGTGC 61.123 66.667 8.52 4.53 0.00 5.01
429 430 2.047560 GCCTTACGAACCGGTGCT 60.048 61.111 8.52 0.00 0.00 4.40
430 431 1.216178 GCCTTACGAACCGGTGCTA 59.784 57.895 8.52 0.00 0.00 3.49
431 432 0.179092 GCCTTACGAACCGGTGCTAT 60.179 55.000 8.52 0.00 0.00 2.97
432 433 1.741394 GCCTTACGAACCGGTGCTATT 60.741 52.381 8.52 0.00 0.00 1.73
433 434 1.931172 CCTTACGAACCGGTGCTATTG 59.069 52.381 8.52 0.00 0.00 1.90
434 435 1.326548 CTTACGAACCGGTGCTATTGC 59.673 52.381 8.52 0.00 40.20 3.56
435 436 0.460635 TACGAACCGGTGCTATTGCC 60.461 55.000 8.52 0.00 38.71 4.52
436 437 2.469516 CGAACCGGTGCTATTGCCC 61.470 63.158 8.52 0.00 38.71 5.36
437 438 2.437716 AACCGGTGCTATTGCCCG 60.438 61.111 8.52 17.41 45.75 6.13
440 441 2.437716 CGGTGCTATTGCCCGGTT 60.438 61.111 16.86 0.00 43.94 4.44
441 442 2.469516 CGGTGCTATTGCCCGGTTC 61.470 63.158 16.86 0.00 43.94 3.62
442 443 1.077716 GGTGCTATTGCCCGGTTCT 60.078 57.895 0.00 0.00 38.71 3.01
443 444 1.376609 GGTGCTATTGCCCGGTTCTG 61.377 60.000 0.00 0.00 38.71 3.02
444 445 1.748879 TGCTATTGCCCGGTTCTGC 60.749 57.895 0.00 0.00 38.71 4.26
445 446 1.748879 GCTATTGCCCGGTTCTGCA 60.749 57.895 0.00 0.00 35.27 4.41
446 447 1.993369 GCTATTGCCCGGTTCTGCAC 61.993 60.000 0.00 0.00 37.18 4.57
447 448 0.392998 CTATTGCCCGGTTCTGCACT 60.393 55.000 0.00 0.00 37.18 4.40
448 449 0.906066 TATTGCCCGGTTCTGCACTA 59.094 50.000 0.00 0.00 37.18 2.74
449 450 0.037590 ATTGCCCGGTTCTGCACTAA 59.962 50.000 0.00 0.00 37.18 2.24
450 451 0.037590 TTGCCCGGTTCTGCACTAAT 59.962 50.000 0.00 0.00 37.18 1.73
451 452 0.676466 TGCCCGGTTCTGCACTAATG 60.676 55.000 0.00 0.00 31.31 1.90
545 546 6.098124 ACAGATAGTGTAGTAGTACTCCGTCT 59.902 42.308 5.96 8.41 37.75 4.18
643 932 6.139671 TCTTAGAGCAGTTGAATCCCTCTAT 58.860 40.000 0.00 0.00 35.69 1.98
777 1072 2.028020 CAGTCCAGTTGGTAGAGGAACC 60.028 54.545 0.00 0.00 40.19 3.62
780 1075 1.337823 CCAGTTGGTAGAGGAACCGTG 60.338 57.143 0.00 0.00 42.91 4.94
921 1308 3.126000 GCTGACTCCTTCCTTTTTGATCG 59.874 47.826 0.00 0.00 0.00 3.69
964 1351 5.579511 CACACGTCCGGAAGTAGATTTAAAT 59.420 40.000 22.92 0.00 0.00 1.40
983 1379 7.639113 TTAAATTTGGTTCCTCGCTAATCAT 57.361 32.000 0.00 0.00 0.00 2.45
1014 1410 5.455872 TCCCTCTCCATATATAATCCCGAC 58.544 45.833 0.00 0.00 0.00 4.79
1017 1413 4.212716 TCTCCATATATAATCCCGACCCG 58.787 47.826 0.00 0.00 0.00 5.28
1018 1414 4.079615 TCTCCATATATAATCCCGACCCGA 60.080 45.833 0.00 0.00 0.00 5.14
1020 1416 3.069158 CCATATATAATCCCGACCCGACC 59.931 52.174 0.00 0.00 0.00 4.79
1021 1417 1.565067 ATATAATCCCGACCCGACCC 58.435 55.000 0.00 0.00 0.00 4.46
1022 1418 0.895100 TATAATCCCGACCCGACCCG 60.895 60.000 0.00 0.00 0.00 5.28
1038 1443 4.388499 CGACCCACCCCGTCCTTG 62.388 72.222 0.00 0.00 0.00 3.61
1238 1685 1.606601 CTCGTCCTCCTCCACCACA 60.607 63.158 0.00 0.00 0.00 4.17
1240 1687 0.761323 TCGTCCTCCTCCACCACAAA 60.761 55.000 0.00 0.00 0.00 2.83
1251 1698 3.055719 CCACAAATCTGGCGGCGT 61.056 61.111 9.37 0.00 0.00 5.68
1252 1699 2.625823 CCACAAATCTGGCGGCGTT 61.626 57.895 9.37 0.00 0.00 4.84
1257 1725 3.545124 AATCTGGCGGCGTTGACCA 62.545 57.895 9.37 6.25 0.00 4.02
1324 1792 1.303643 CCTCAAGCCAAGGGACACC 60.304 63.158 0.00 0.00 0.00 4.16
1351 2446 2.893398 GGCCAGGTCTACCGTCTG 59.107 66.667 0.00 0.00 42.08 3.51
1357 2452 2.370349 CAGGTCTACCGTCTGATCACT 58.630 52.381 0.00 0.00 42.08 3.41
1381 2487 3.606687 CCAAGGTTCGTGCCTAATTACT 58.393 45.455 1.32 0.00 38.03 2.24
1382 2488 4.007659 CCAAGGTTCGTGCCTAATTACTT 58.992 43.478 1.32 0.00 38.03 2.24
1383 2489 5.180271 CCAAGGTTCGTGCCTAATTACTTA 58.820 41.667 1.32 0.00 38.03 2.24
1385 2491 4.427312 AGGTTCGTGCCTAATTACTTACG 58.573 43.478 0.00 0.00 37.04 3.18
1386 2492 4.158394 AGGTTCGTGCCTAATTACTTACGA 59.842 41.667 8.44 8.44 37.04 3.43
1387 2493 4.501921 GGTTCGTGCCTAATTACTTACGAG 59.498 45.833 11.02 0.00 40.89 4.18
1407 2522 6.929625 ACGAGTATTATCCTGATGAATCCAG 58.070 40.000 0.00 0.00 0.00 3.86
1421 2536 1.488705 ATCCAGCAACCAAGGACGGA 61.489 55.000 0.00 0.00 33.57 4.69
1511 2719 0.321653 GTGACCAAGGCCGTTCAGAT 60.322 55.000 0.00 0.00 0.00 2.90
1535 2743 4.521062 GCAGGAGAGGATGCGCGT 62.521 66.667 8.43 0.00 31.87 6.01
1837 3078 9.924650 AATGAACTACGTAGAAAAGTAGAACAT 57.075 29.630 28.74 13.45 41.99 2.71
1890 3131 5.600908 TTAAGAGCGTGTTTGGTTACATC 57.399 39.130 0.00 0.00 0.00 3.06
1940 3181 3.973206 TTCTATTGAGCCGGTTTGAGA 57.027 42.857 1.90 0.00 0.00 3.27
1981 3225 3.507233 CCAGATGCACATAGTTTGGTTGT 59.493 43.478 0.00 0.00 0.00 3.32
2009 3253 2.684927 GCCCCTAGTTGCATGAGACAAT 60.685 50.000 0.00 0.00 0.00 2.71
2034 3278 2.903350 GACCCGGCGTTTGGTTGT 60.903 61.111 6.01 0.00 34.20 3.32
2050 3294 1.472480 GTTGTCCGCATTGCATTAGGT 59.528 47.619 9.69 0.00 0.00 3.08
2067 3311 5.622346 TTAGGTGCACATATGACATGGTA 57.378 39.130 20.43 0.00 0.00 3.25
2072 3316 5.299028 GGTGCACATATGACATGGTATTTGA 59.701 40.000 20.43 0.00 0.00 2.69
2079 3323 8.644216 ACATATGACATGGTATTTGATTGCAAT 58.356 29.630 12.83 12.83 33.25 3.56
2143 3387 6.494893 TTACCACACAGAATCTAAACATGC 57.505 37.500 0.00 0.00 0.00 4.06
2196 3440 8.969267 GTTCATCCTAACTACTATCAAATGACG 58.031 37.037 0.00 0.00 0.00 4.35
2204 3448 7.360575 ACTACTATCAAATGACGGTTCAAAC 57.639 36.000 0.00 0.00 34.61 2.93
2250 3500 2.607282 GGGATAGTTCATCGGTGCTACG 60.607 54.545 0.00 0.00 34.12 3.51
2279 3538 3.335183 TCCTCTTCCTCTCCTCTTCTTCA 59.665 47.826 0.00 0.00 0.00 3.02
2289 3549 4.021544 TCTCCTCTTCTTCAACTTCTGCTC 60.022 45.833 0.00 0.00 0.00 4.26
2291 3551 3.244353 CCTCTTCTTCAACTTCTGCTCCA 60.244 47.826 0.00 0.00 0.00 3.86
2323 3600 1.367599 GCTTCTGCTACTGCTGCTGG 61.368 60.000 11.29 1.84 40.48 4.85
2394 3692 2.270205 CATCGCCTCTGCCCACTT 59.730 61.111 0.00 0.00 0.00 3.16
2534 3832 4.164796 TGAGGATCCAGTTATGCAGAATGT 59.835 41.667 15.82 0.00 39.31 2.71
2563 3861 6.994221 AGCAAGAACTAGCTTAACTTGAGTA 58.006 36.000 19.24 0.00 38.01 2.59
2592 3890 2.423947 GGTGGAATGGCTTCTGATCCAT 60.424 50.000 6.24 6.24 44.46 3.41
2599 3897 5.837770 ATGGCTTCTGATCCATGATCTTA 57.162 39.130 10.11 0.00 41.26 2.10
2655 3953 2.498078 ACAGTTACTCTAAGGCTGGAGC 59.502 50.000 14.92 0.00 33.54 4.70
2739 4037 4.513406 TGGTACCTTGTTTTCCTGAAGT 57.487 40.909 14.36 0.00 0.00 3.01
2770 4068 3.705638 CGGCCGACATGCATAGCG 61.706 66.667 24.07 6.11 0.00 4.26
2797 4095 1.418637 TCCAAGGTAGAACTTGCCGTT 59.581 47.619 1.54 0.00 44.98 4.44
2848 4146 4.607293 TGCTGTCAGTGAGAATGTTAGT 57.393 40.909 0.93 0.00 0.00 2.24
2946 4244 1.071605 GCTTGTGTAGTGCTTCCTCG 58.928 55.000 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.458397 TGGACATGAAAGGACAAGTACTAATT 58.542 34.615 0.00 0.00 0.00 1.40
5 6 6.013725 ACATGGACATGAAAGGACAAGTACTA 60.014 38.462 18.38 0.00 41.20 1.82
6 7 4.974645 TGGACATGAAAGGACAAGTACT 57.025 40.909 0.00 0.00 0.00 2.73
7 8 5.003804 ACATGGACATGAAAGGACAAGTAC 58.996 41.667 18.38 0.00 41.20 2.73
9 10 4.104383 ACATGGACATGAAAGGACAAGT 57.896 40.909 18.38 0.00 41.20 3.16
10 11 4.763793 AGAACATGGACATGAAAGGACAAG 59.236 41.667 18.38 0.00 41.20 3.16
11 12 4.728772 AGAACATGGACATGAAAGGACAA 58.271 39.130 18.38 0.00 41.20 3.18
12 13 4.371624 AGAACATGGACATGAAAGGACA 57.628 40.909 18.38 0.00 41.20 4.02
13 14 4.142816 CGAAGAACATGGACATGAAAGGAC 60.143 45.833 18.38 5.14 41.20 3.85
14 15 4.002982 CGAAGAACATGGACATGAAAGGA 58.997 43.478 18.38 0.00 41.20 3.36
15 16 3.753272 ACGAAGAACATGGACATGAAAGG 59.247 43.478 18.38 5.58 41.20 3.11
16 17 5.180117 AGAACGAAGAACATGGACATGAAAG 59.820 40.000 18.38 6.41 41.20 2.62
17 18 5.049474 CAGAACGAAGAACATGGACATGAAA 60.049 40.000 18.38 0.00 41.20 2.69
18 19 4.452114 CAGAACGAAGAACATGGACATGAA 59.548 41.667 18.38 0.00 41.20 2.57
19 20 3.996363 CAGAACGAAGAACATGGACATGA 59.004 43.478 18.38 0.00 41.20 3.07
20 21 3.996363 TCAGAACGAAGAACATGGACATG 59.004 43.478 10.57 10.57 44.15 3.21
21 22 4.271696 TCAGAACGAAGAACATGGACAT 57.728 40.909 0.00 0.00 0.00 3.06
22 23 3.744238 TCAGAACGAAGAACATGGACA 57.256 42.857 0.00 0.00 0.00 4.02
23 24 4.058817 AGTTCAGAACGAAGAACATGGAC 58.941 43.478 7.68 0.00 44.94 4.02
24 25 4.336889 AGTTCAGAACGAAGAACATGGA 57.663 40.909 7.68 0.00 44.94 3.41
25 26 6.202954 ACTTAAGTTCAGAACGAAGAACATGG 59.797 38.462 25.91 9.00 44.94 3.66
26 27 7.042725 TCACTTAAGTTCAGAACGAAGAACATG 60.043 37.037 25.91 17.72 44.94 3.21
27 28 6.984474 TCACTTAAGTTCAGAACGAAGAACAT 59.016 34.615 25.91 10.15 44.94 2.71
28 29 6.334989 TCACTTAAGTTCAGAACGAAGAACA 58.665 36.000 25.91 13.19 44.94 3.18
29 30 6.823678 TCACTTAAGTTCAGAACGAAGAAC 57.176 37.500 25.91 0.00 43.33 3.01
30 31 8.335356 CAAATCACTTAAGTTCAGAACGAAGAA 58.665 33.333 25.91 17.70 34.95 2.52
31 32 7.518370 GCAAATCACTTAAGTTCAGAACGAAGA 60.518 37.037 25.91 13.63 34.95 2.87
32 33 6.575201 GCAAATCACTTAAGTTCAGAACGAAG 59.425 38.462 20.94 20.94 36.16 3.79
33 34 6.260050 AGCAAATCACTTAAGTTCAGAACGAA 59.740 34.615 5.07 5.71 36.23 3.85
34 35 5.758296 AGCAAATCACTTAAGTTCAGAACGA 59.242 36.000 5.07 0.00 36.23 3.85
35 36 5.990408 AGCAAATCACTTAAGTTCAGAACG 58.010 37.500 5.07 0.00 36.23 3.95
36 37 8.534778 CAAAAGCAAATCACTTAAGTTCAGAAC 58.465 33.333 5.07 5.00 0.00 3.01
37 38 8.250332 ACAAAAGCAAATCACTTAAGTTCAGAA 58.750 29.630 5.07 0.00 0.00 3.02
38 39 7.701924 CACAAAAGCAAATCACTTAAGTTCAGA 59.298 33.333 5.07 0.60 0.00 3.27
39 40 7.043192 CCACAAAAGCAAATCACTTAAGTTCAG 60.043 37.037 5.07 0.00 0.00 3.02
40 41 6.756074 CCACAAAAGCAAATCACTTAAGTTCA 59.244 34.615 5.07 0.00 0.00 3.18
41 42 6.756542 ACCACAAAAGCAAATCACTTAAGTTC 59.243 34.615 5.07 0.00 0.00 3.01
42 43 6.534793 CACCACAAAAGCAAATCACTTAAGTT 59.465 34.615 5.07 0.00 0.00 2.66
43 44 6.042143 CACCACAAAAGCAAATCACTTAAGT 58.958 36.000 1.12 1.12 0.00 2.24
44 45 6.042143 ACACCACAAAAGCAAATCACTTAAG 58.958 36.000 0.00 0.00 0.00 1.85
45 46 5.971763 ACACCACAAAAGCAAATCACTTAA 58.028 33.333 0.00 0.00 0.00 1.85
46 47 5.590530 ACACCACAAAAGCAAATCACTTA 57.409 34.783 0.00 0.00 0.00 2.24
47 48 4.470334 ACACCACAAAAGCAAATCACTT 57.530 36.364 0.00 0.00 0.00 3.16
48 49 4.470334 AACACCACAAAAGCAAATCACT 57.530 36.364 0.00 0.00 0.00 3.41
49 50 9.801873 ATATATAACACCACAAAAGCAAATCAC 57.198 29.630 0.00 0.00 0.00 3.06
50 51 9.800433 CATATATAACACCACAAAAGCAAATCA 57.200 29.630 0.00 0.00 0.00 2.57
53 54 9.632807 GTTCATATATAACACCACAAAAGCAAA 57.367 29.630 0.00 0.00 0.00 3.68
54 55 7.965655 CGTTCATATATAACACCACAAAAGCAA 59.034 33.333 0.00 0.00 0.00 3.91
55 56 7.468441 CGTTCATATATAACACCACAAAAGCA 58.532 34.615 0.00 0.00 0.00 3.91
56 57 6.413818 GCGTTCATATATAACACCACAAAAGC 59.586 38.462 0.00 0.00 0.00 3.51
57 58 7.693952 AGCGTTCATATATAACACCACAAAAG 58.306 34.615 0.00 0.00 0.00 2.27
58 59 7.618502 AGCGTTCATATATAACACCACAAAA 57.381 32.000 0.00 0.00 0.00 2.44
59 60 7.618502 AAGCGTTCATATATAACACCACAAA 57.381 32.000 0.00 0.00 0.00 2.83
60 61 8.896320 ATAAGCGTTCATATATAACACCACAA 57.104 30.769 0.00 0.00 0.00 3.33
72 73 9.657419 TGATTGTCATGATATAAGCGTTCATAT 57.343 29.630 0.00 0.00 0.00 1.78
73 74 9.657419 ATGATTGTCATGATATAAGCGTTCATA 57.343 29.630 0.00 0.00 35.43 2.15
74 75 7.967890 TGATTGTCATGATATAAGCGTTCAT 57.032 32.000 0.00 0.00 0.00 2.57
75 76 7.967890 ATGATTGTCATGATATAAGCGTTCA 57.032 32.000 0.00 0.00 35.43 3.18
89 90 5.876460 TCATCGAGTTCAACATGATTGTCAT 59.124 36.000 0.00 0.00 37.65 3.06
90 91 5.237048 TCATCGAGTTCAACATGATTGTCA 58.763 37.500 0.00 0.00 34.06 3.58
91 92 5.784750 TCATCGAGTTCAACATGATTGTC 57.215 39.130 0.00 0.00 34.06 3.18
92 93 6.748333 AATCATCGAGTTCAACATGATTGT 57.252 33.333 11.81 0.00 42.02 2.71
94 95 6.990341 TCAATCATCGAGTTCAACATGATT 57.010 33.333 0.00 8.20 43.61 2.57
95 96 7.498239 AGAATCAATCATCGAGTTCAACATGAT 59.502 33.333 0.00 0.00 37.54 2.45
96 97 6.820152 AGAATCAATCATCGAGTTCAACATGA 59.180 34.615 0.00 0.00 0.00 3.07
97 98 7.012959 AGAATCAATCATCGAGTTCAACATG 57.987 36.000 0.00 0.00 0.00 3.21
98 99 7.984050 AGTAGAATCAATCATCGAGTTCAACAT 59.016 33.333 0.00 0.00 0.00 2.71
99 100 7.323420 AGTAGAATCAATCATCGAGTTCAACA 58.677 34.615 0.00 0.00 0.00 3.33
100 101 7.763172 AGTAGAATCAATCATCGAGTTCAAC 57.237 36.000 0.00 0.00 0.00 3.18
101 102 8.903820 TCTAGTAGAATCAATCATCGAGTTCAA 58.096 33.333 0.00 0.00 0.00 2.69
102 103 8.451908 TCTAGTAGAATCAATCATCGAGTTCA 57.548 34.615 0.00 0.00 0.00 3.18
103 104 9.737427 TTTCTAGTAGAATCAATCATCGAGTTC 57.263 33.333 13.34 0.00 33.67 3.01
134 135 9.983804 CGATACTACACATTGTACACGATATAT 57.016 33.333 0.00 0.00 0.00 0.86
135 136 8.992073 ACGATACTACACATTGTACACGATATA 58.008 33.333 0.00 0.00 0.00 0.86
136 137 7.868775 ACGATACTACACATTGTACACGATAT 58.131 34.615 0.00 0.00 0.00 1.63
137 138 7.250445 ACGATACTACACATTGTACACGATA 57.750 36.000 0.00 0.00 0.00 2.92
138 139 6.127810 ACGATACTACACATTGTACACGAT 57.872 37.500 0.00 0.00 0.00 3.73
139 140 5.550232 ACGATACTACACATTGTACACGA 57.450 39.130 0.00 0.00 0.00 4.35
140 141 7.724128 TTTACGATACTACACATTGTACACG 57.276 36.000 0.00 0.00 0.00 4.49
146 147 9.632969 GCTTGTATTTTACGATACTACACATTG 57.367 33.333 0.00 0.00 34.36 2.82
147 148 9.373603 TGCTTGTATTTTACGATACTACACATT 57.626 29.630 0.00 0.00 34.36 2.71
148 149 8.936070 TGCTTGTATTTTACGATACTACACAT 57.064 30.769 0.00 0.00 34.36 3.21
149 150 8.760103 TTGCTTGTATTTTACGATACTACACA 57.240 30.769 0.00 0.00 34.36 3.72
150 151 9.469239 GTTTGCTTGTATTTTACGATACTACAC 57.531 33.333 0.00 0.00 34.36 2.90
151 152 8.374728 CGTTTGCTTGTATTTTACGATACTACA 58.625 33.333 0.00 0.00 34.36 2.74
152 153 8.586273 TCGTTTGCTTGTATTTTACGATACTAC 58.414 33.333 0.00 0.00 34.36 2.73
153 154 8.686397 TCGTTTGCTTGTATTTTACGATACTA 57.314 30.769 0.00 0.00 34.36 1.82
154 155 7.585286 TCGTTTGCTTGTATTTTACGATACT 57.415 32.000 0.00 0.00 34.36 2.12
155 156 8.644264 TTTCGTTTGCTTGTATTTTACGATAC 57.356 30.769 0.00 0.00 36.58 2.24
156 157 9.661187 TTTTTCGTTTGCTTGTATTTTACGATA 57.339 25.926 0.00 0.00 36.58 2.92
157 158 8.563289 TTTTTCGTTTGCTTGTATTTTACGAT 57.437 26.923 0.00 0.00 36.58 3.73
158 159 7.909121 TCTTTTTCGTTTGCTTGTATTTTACGA 59.091 29.630 0.00 0.00 35.11 3.43
159 160 8.041395 TCTTTTTCGTTTGCTTGTATTTTACG 57.959 30.769 0.00 0.00 0.00 3.18
167 168 9.701355 CATTTTAATTCTTTTTCGTTTGCTTGT 57.299 25.926 0.00 0.00 0.00 3.16
168 169 9.913451 TCATTTTAATTCTTTTTCGTTTGCTTG 57.087 25.926 0.00 0.00 0.00 4.01
233 234 6.306199 ACCGGTACTATAAGGTTTGGTTTTT 58.694 36.000 4.49 0.00 32.17 1.94
234 235 5.879763 ACCGGTACTATAAGGTTTGGTTTT 58.120 37.500 4.49 0.00 32.17 2.43
235 236 5.503634 ACCGGTACTATAAGGTTTGGTTT 57.496 39.130 4.49 0.00 32.17 3.27
236 237 5.247862 CAACCGGTACTATAAGGTTTGGTT 58.752 41.667 8.00 0.00 43.72 3.67
237 238 4.323715 CCAACCGGTACTATAAGGTTTGGT 60.324 45.833 8.00 0.00 43.72 3.67
238 239 4.193865 CCAACCGGTACTATAAGGTTTGG 58.806 47.826 8.00 2.77 43.72 3.28
239 240 4.835678 ACCAACCGGTACTATAAGGTTTG 58.164 43.478 8.00 0.00 46.71 2.93
266 267 0.616891 AGCCCTTTAGTACCGGTTGG 59.383 55.000 15.04 5.94 42.84 3.77
267 268 1.406477 GGAGCCCTTTAGTACCGGTTG 60.406 57.143 15.04 0.00 0.00 3.77
268 269 0.907486 GGAGCCCTTTAGTACCGGTT 59.093 55.000 15.04 0.00 0.00 4.44
269 270 0.252375 TGGAGCCCTTTAGTACCGGT 60.252 55.000 13.98 13.98 0.00 5.28
270 271 0.464452 CTGGAGCCCTTTAGTACCGG 59.536 60.000 0.00 0.00 0.00 5.28
271 272 0.464452 CCTGGAGCCCTTTAGTACCG 59.536 60.000 0.00 0.00 0.00 4.02
272 273 0.180642 GCCTGGAGCCCTTTAGTACC 59.819 60.000 0.00 0.00 34.35 3.34
273 274 3.782632 GCCTGGAGCCCTTTAGTAC 57.217 57.895 0.00 0.00 34.35 2.73
303 304 4.012895 CAACCACGTGGCACGAGC 62.013 66.667 42.65 4.67 46.05 5.03
304 305 4.012895 GCAACCACGTGGCACGAG 62.013 66.667 42.65 34.61 46.05 4.18
307 308 2.291457 AAAAGGCAACCACGTGGCAC 62.291 55.000 34.26 22.38 46.15 5.01
308 309 0.752009 TAAAAGGCAACCACGTGGCA 60.752 50.000 34.26 5.50 46.15 4.92
309 310 0.039527 CTAAAAGGCAACCACGTGGC 60.040 55.000 34.26 19.99 44.15 5.01
310 311 0.039527 GCTAAAAGGCAACCACGTGG 60.040 55.000 32.83 32.83 42.17 4.94
311 312 0.665835 TGCTAAAAGGCAACCACGTG 59.334 50.000 9.08 9.08 39.43 4.49
312 313 0.666374 GTGCTAAAAGGCAACCACGT 59.334 50.000 0.00 0.00 44.18 4.49
313 314 0.039527 GGTGCTAAAAGGCAACCACG 60.040 55.000 0.00 0.00 43.41 4.94
314 315 0.039527 CGGTGCTAAAAGGCAACCAC 60.040 55.000 0.00 0.00 46.10 4.16
315 316 1.175983 CCGGTGCTAAAAGGCAACCA 61.176 55.000 0.00 0.00 46.10 3.67
316 317 1.176619 ACCGGTGCTAAAAGGCAACC 61.177 55.000 6.12 0.00 46.10 3.77
317 318 0.671796 AACCGGTGCTAAAAGGCAAC 59.328 50.000 8.52 0.00 45.46 4.17
318 319 0.955905 GAACCGGTGCTAAAAGGCAA 59.044 50.000 8.52 0.00 44.18 4.52
319 320 1.231958 CGAACCGGTGCTAAAAGGCA 61.232 55.000 8.52 0.00 40.15 4.75
320 321 1.232621 ACGAACCGGTGCTAAAAGGC 61.233 55.000 8.52 0.00 0.00 4.35
321 322 0.515564 CACGAACCGGTGCTAAAAGG 59.484 55.000 8.52 0.00 0.00 3.11
335 336 1.246649 TAGTACCGGTTCAGCACGAA 58.753 50.000 15.04 0.00 0.00 3.85
336 337 1.246649 TTAGTACCGGTTCAGCACGA 58.753 50.000 15.04 0.00 0.00 4.35
337 338 1.990563 CTTTAGTACCGGTTCAGCACG 59.009 52.381 15.04 0.00 0.00 5.34
338 339 2.344025 CCTTTAGTACCGGTTCAGCAC 58.656 52.381 15.04 3.84 0.00 4.40
339 340 1.276989 CCCTTTAGTACCGGTTCAGCA 59.723 52.381 15.04 0.00 0.00 4.41
340 341 1.406477 CCCCTTTAGTACCGGTTCAGC 60.406 57.143 15.04 0.59 0.00 4.26
341 342 1.208776 CCCCCTTTAGTACCGGTTCAG 59.791 57.143 15.04 0.52 0.00 3.02
342 343 1.278537 CCCCCTTTAGTACCGGTTCA 58.721 55.000 15.04 0.00 0.00 3.18
360 361 0.111639 TTGTGGTCACTAAAGCCCCC 59.888 55.000 2.66 0.00 0.00 5.40
361 362 2.215942 ATTGTGGTCACTAAAGCCCC 57.784 50.000 2.66 0.00 0.00 5.80
362 363 4.765339 ACTAAATTGTGGTCACTAAAGCCC 59.235 41.667 2.66 0.00 0.00 5.19
363 364 5.699839 CACTAAATTGTGGTCACTAAAGCC 58.300 41.667 2.66 0.00 34.56 4.35
364 365 5.154222 GCACTAAATTGTGGTCACTAAAGC 58.846 41.667 2.66 0.00 38.31 3.51
365 366 5.616866 CGGCACTAAATTGTGGTCACTAAAG 60.617 44.000 2.66 0.00 38.31 1.85
366 367 4.214545 CGGCACTAAATTGTGGTCACTAAA 59.785 41.667 2.66 0.00 38.31 1.85
367 368 3.749088 CGGCACTAAATTGTGGTCACTAA 59.251 43.478 2.66 0.00 38.31 2.24
368 369 3.007074 TCGGCACTAAATTGTGGTCACTA 59.993 43.478 2.66 0.00 38.31 2.74
369 370 2.151202 CGGCACTAAATTGTGGTCACT 58.849 47.619 2.66 0.00 38.31 3.41
370 371 2.147958 TCGGCACTAAATTGTGGTCAC 58.852 47.619 0.00 0.00 38.31 3.67
371 372 2.552599 TCGGCACTAAATTGTGGTCA 57.447 45.000 0.00 0.00 38.31 4.02
372 373 5.065988 ACATAATCGGCACTAAATTGTGGTC 59.934 40.000 0.00 0.00 38.31 4.02
373 374 4.947388 ACATAATCGGCACTAAATTGTGGT 59.053 37.500 0.00 0.00 38.31 4.16
374 375 5.499139 ACATAATCGGCACTAAATTGTGG 57.501 39.130 0.00 0.00 38.31 4.17
375 376 6.910433 GGTTACATAATCGGCACTAAATTGTG 59.090 38.462 0.00 0.00 40.62 3.33
376 377 6.238266 CGGTTACATAATCGGCACTAAATTGT 60.238 38.462 0.00 0.00 36.24 2.71
377 378 6.133392 CGGTTACATAATCGGCACTAAATTG 58.867 40.000 0.00 0.00 36.24 2.32
378 379 6.295039 CGGTTACATAATCGGCACTAAATT 57.705 37.500 0.00 0.00 36.24 1.82
379 380 5.917541 CGGTTACATAATCGGCACTAAAT 57.082 39.130 0.00 0.00 36.24 1.40
388 389 4.210537 CCTTTAGTGCCGGTTACATAATCG 59.789 45.833 1.90 0.00 39.38 3.34
389 390 4.514066 CCCTTTAGTGCCGGTTACATAATC 59.486 45.833 1.90 0.00 0.00 1.75
390 391 4.457466 CCCTTTAGTGCCGGTTACATAAT 58.543 43.478 1.90 0.00 0.00 1.28
391 392 3.876341 CCCTTTAGTGCCGGTTACATAA 58.124 45.455 1.90 1.04 0.00 1.90
392 393 2.420408 GCCCTTTAGTGCCGGTTACATA 60.420 50.000 1.90 0.00 0.00 2.29
393 394 1.680860 GCCCTTTAGTGCCGGTTACAT 60.681 52.381 1.90 0.00 0.00 2.29
394 395 0.321830 GCCCTTTAGTGCCGGTTACA 60.322 55.000 1.90 0.00 0.00 2.41
395 396 1.028330 GGCCCTTTAGTGCCGGTTAC 61.028 60.000 1.90 2.66 38.00 2.50
396 397 1.300634 GGCCCTTTAGTGCCGGTTA 59.699 57.895 1.90 0.00 38.00 2.85
397 398 2.035155 GGCCCTTTAGTGCCGGTT 59.965 61.111 1.90 0.00 38.00 4.44
402 403 1.736126 GTTCGTAAGGCCCTTTAGTGC 59.264 52.381 0.00 0.00 38.47 4.40
403 404 2.353323 GGTTCGTAAGGCCCTTTAGTG 58.647 52.381 0.00 0.00 38.47 2.74
404 405 1.066645 CGGTTCGTAAGGCCCTTTAGT 60.067 52.381 0.00 0.00 38.47 2.24
405 406 1.648504 CGGTTCGTAAGGCCCTTTAG 58.351 55.000 0.00 0.00 38.47 1.85
406 407 0.249955 CCGGTTCGTAAGGCCCTTTA 59.750 55.000 0.00 0.00 38.47 1.85
407 408 1.002990 CCGGTTCGTAAGGCCCTTT 60.003 57.895 0.00 0.00 38.47 3.11
408 409 2.219164 ACCGGTTCGTAAGGCCCTT 61.219 57.895 0.00 0.00 38.47 3.95
409 410 2.605601 ACCGGTTCGTAAGGCCCT 60.606 61.111 0.00 0.00 38.47 5.19
410 411 2.435410 CACCGGTTCGTAAGGCCC 60.435 66.667 2.97 0.00 38.47 5.80
411 412 2.229690 TAGCACCGGTTCGTAAGGCC 62.230 60.000 2.97 0.00 38.47 5.19
412 413 0.179092 ATAGCACCGGTTCGTAAGGC 60.179 55.000 2.97 2.83 38.47 4.35
413 414 1.931172 CAATAGCACCGGTTCGTAAGG 59.069 52.381 2.97 0.00 38.47 2.69
414 415 1.326548 GCAATAGCACCGGTTCGTAAG 59.673 52.381 2.97 0.00 41.58 2.34
415 416 1.361793 GCAATAGCACCGGTTCGTAA 58.638 50.000 2.97 0.00 41.58 3.18
416 417 0.460635 GGCAATAGCACCGGTTCGTA 60.461 55.000 2.97 0.00 44.61 3.43
417 418 1.743995 GGCAATAGCACCGGTTCGT 60.744 57.895 2.97 0.00 44.61 3.85
418 419 2.469516 GGGCAATAGCACCGGTTCG 61.470 63.158 2.97 0.00 44.61 3.95
419 420 2.469516 CGGGCAATAGCACCGGTTC 61.470 63.158 2.97 0.00 45.12 3.62
420 421 2.437716 CGGGCAATAGCACCGGTT 60.438 61.111 2.97 0.00 45.12 4.44
424 425 1.077716 AGAACCGGGCAATAGCACC 60.078 57.895 6.32 0.00 42.77 5.01
425 426 1.993369 GCAGAACCGGGCAATAGCAC 61.993 60.000 6.32 0.00 44.61 4.40
426 427 1.748879 GCAGAACCGGGCAATAGCA 60.749 57.895 6.32 0.00 44.61 3.49
427 428 1.748879 TGCAGAACCGGGCAATAGC 60.749 57.895 6.32 2.35 37.03 2.97
428 429 0.392998 AGTGCAGAACCGGGCAATAG 60.393 55.000 6.32 0.00 42.45 1.73
429 430 0.906066 TAGTGCAGAACCGGGCAATA 59.094 50.000 6.32 6.43 42.45 1.90
430 431 0.037590 TTAGTGCAGAACCGGGCAAT 59.962 50.000 6.32 7.58 42.45 3.56
431 432 0.037590 ATTAGTGCAGAACCGGGCAA 59.962 50.000 6.32 0.00 42.45 4.52
432 433 0.676466 CATTAGTGCAGAACCGGGCA 60.676 55.000 6.32 1.81 37.77 5.36
433 434 0.676782 ACATTAGTGCAGAACCGGGC 60.677 55.000 6.32 0.00 0.00 6.13
434 435 1.821216 AACATTAGTGCAGAACCGGG 58.179 50.000 6.32 0.00 0.00 5.73
435 436 2.095263 CCAAACATTAGTGCAGAACCGG 60.095 50.000 0.00 0.00 0.00 5.28
436 437 2.552315 ACCAAACATTAGTGCAGAACCG 59.448 45.455 0.00 0.00 0.00 4.44
437 438 3.568007 TCACCAAACATTAGTGCAGAACC 59.432 43.478 0.00 0.00 0.00 3.62
438 439 4.829064 TCACCAAACATTAGTGCAGAAC 57.171 40.909 0.00 0.00 0.00 3.01
439 440 4.887071 AGTTCACCAAACATTAGTGCAGAA 59.113 37.500 0.00 0.00 40.56 3.02
440 441 4.460263 AGTTCACCAAACATTAGTGCAGA 58.540 39.130 0.00 0.00 40.56 4.26
441 442 4.836125 AGTTCACCAAACATTAGTGCAG 57.164 40.909 0.00 0.00 40.56 4.41
442 443 4.736168 GCAAGTTCACCAAACATTAGTGCA 60.736 41.667 0.00 0.00 40.56 4.57
443 444 3.735746 GCAAGTTCACCAAACATTAGTGC 59.264 43.478 0.00 0.00 40.56 4.40
444 445 5.186996 AGCAAGTTCACCAAACATTAGTG 57.813 39.130 0.00 0.00 40.56 2.74
445 446 4.887071 TGAGCAAGTTCACCAAACATTAGT 59.113 37.500 0.00 0.00 40.56 2.24
446 447 5.437289 TGAGCAAGTTCACCAAACATTAG 57.563 39.130 0.00 0.00 40.56 1.73
447 448 5.843673 TTGAGCAAGTTCACCAAACATTA 57.156 34.783 0.00 0.00 40.56 1.90
448 449 4.734398 TTGAGCAAGTTCACCAAACATT 57.266 36.364 0.00 0.00 40.56 2.71
449 450 4.160252 AGTTTGAGCAAGTTCACCAAACAT 59.840 37.500 18.09 7.40 45.15 2.71
450 451 3.509575 AGTTTGAGCAAGTTCACCAAACA 59.490 39.130 18.09 0.00 45.15 2.83
451 452 4.110036 AGTTTGAGCAAGTTCACCAAAC 57.890 40.909 0.00 0.00 43.88 2.93
545 546 5.529581 TCAGCGACAGTTAATATGGATCA 57.470 39.130 0.00 0.00 0.00 2.92
608 624 6.919662 TCAACTGCTCTAAGAATTTGCAAAAG 59.080 34.615 17.19 8.71 33.07 2.27
656 945 3.305897 CGCGCTTCATAAACATGTGTCTA 59.694 43.478 5.56 0.00 0.00 2.59
660 949 2.525750 ACGCGCTTCATAAACATGTG 57.474 45.000 5.73 0.00 0.00 3.21
674 963 1.233019 TAGATACTGGGTCTACGCGC 58.767 55.000 5.73 0.00 0.00 6.86
921 1308 2.533391 GATGCTGGTTGTTGCGAGGC 62.533 60.000 0.00 0.00 0.00 4.70
964 1351 5.353394 AGTATGATTAGCGAGGAACCAAA 57.647 39.130 0.00 0.00 0.00 3.28
983 1379 8.660681 ATTATATATGGAGAGGGAGAGGAGTA 57.339 38.462 0.00 0.00 0.00 2.59
1021 1417 4.388499 CAAGGACGGGGTGGGTCG 62.388 72.222 0.00 0.00 35.24 4.79
1022 1418 3.246880 ACAAGGACGGGGTGGGTC 61.247 66.667 0.00 0.00 0.00 4.46
1038 1443 5.509501 GGACTCTGGATTCTGATGAGATGAC 60.510 48.000 0.00 0.00 0.00 3.06
1238 1685 2.332654 GGTCAACGCCGCCAGATTT 61.333 57.895 0.00 0.00 0.00 2.17
1240 1687 4.015406 TGGTCAACGCCGCCAGAT 62.015 61.111 0.00 0.00 0.00 2.90
1324 1792 4.787280 ACCTGGCCGAGGAGGAGG 62.787 72.222 23.24 13.76 46.33 4.30
1351 2446 2.076863 CACGAACCTTGGGAAGTGATC 58.923 52.381 0.00 0.00 31.23 2.92
1357 2452 0.766131 TTAGGCACGAACCTTGGGAA 59.234 50.000 6.32 0.00 41.50 3.97
1381 2487 8.417273 TGGATTCATCAGGATAATACTCGTAA 57.583 34.615 0.00 0.00 0.00 3.18
1382 2488 7.363007 GCTGGATTCATCAGGATAATACTCGTA 60.363 40.741 0.00 0.00 33.16 3.43
1383 2489 6.573289 GCTGGATTCATCAGGATAATACTCGT 60.573 42.308 0.00 0.00 33.16 4.18
1385 2491 6.705302 TGCTGGATTCATCAGGATAATACTC 58.295 40.000 0.00 0.00 33.16 2.59
1386 2492 6.692849 TGCTGGATTCATCAGGATAATACT 57.307 37.500 0.00 0.00 33.16 2.12
1387 2493 6.150140 GGTTGCTGGATTCATCAGGATAATAC 59.850 42.308 0.00 0.00 32.82 1.89
1407 2522 0.804989 CAAGATCCGTCCTTGGTTGC 59.195 55.000 0.00 0.00 37.83 4.17
1511 2719 1.493861 CATCCTCTCCTGCTTCCTCA 58.506 55.000 0.00 0.00 0.00 3.86
1535 2743 2.202610 CAATCGCCTCGTCGCAGA 60.203 61.111 0.00 0.00 0.00 4.26
1584 2792 1.001764 TCTCGGCCTCGGTAGTTGA 60.002 57.895 0.00 0.00 36.95 3.18
1590 2798 3.707640 CTCTCCTCTCGGCCTCGGT 62.708 68.421 0.00 0.00 36.95 4.69
1624 2835 2.581354 CCTCTGTTCTCCGCTGGG 59.419 66.667 0.00 0.00 0.00 4.45
1794 3026 4.316205 TCATTTACGTGTATCCTCGCAT 57.684 40.909 0.00 0.00 0.00 4.73
1837 3078 2.579624 TTCTAGCTCCCCCAATACCA 57.420 50.000 0.00 0.00 0.00 3.25
1920 3161 3.369471 CCTCTCAAACCGGCTCAATAGAA 60.369 47.826 0.00 0.00 0.00 2.10
1981 3225 1.077501 GCAACTAGGGGCATGCAGA 60.078 57.895 21.36 0.00 38.63 4.26
2009 3253 0.885596 AAACGCCGGGTCGAAAATGA 60.886 50.000 15.84 0.00 0.00 2.57
2050 3294 7.427214 CAATCAAATACCATGTCATATGTGCA 58.573 34.615 1.90 4.05 0.00 4.57
2143 3387 4.678509 TTTGTTTAAGTAGATGGCGCTG 57.321 40.909 7.64 0.00 0.00 5.18
2196 3440 6.564328 CCAATGGCTCTTAATAGTTTGAACC 58.436 40.000 0.00 0.00 0.00 3.62
2250 3500 4.141158 AGAGGAGAGGAAGAGGAAGATCTC 60.141 50.000 0.00 0.00 33.92 2.75
2279 3538 1.881498 GCTGAAGCTGGAGCAGAAGTT 60.881 52.381 11.48 0.00 45.16 2.66
2302 3562 0.673022 AGCAGCAGTAGCAGAAGCAC 60.673 55.000 0.00 0.00 45.49 4.40
2323 3600 8.616076 TGAAGAAGATGAAAGAAGAACAAGAAC 58.384 33.333 0.00 0.00 0.00 3.01
2394 3692 5.890334 ACGCTTGAAAGAACAAAAGATTGA 58.110 33.333 0.00 0.00 38.94 2.57
2557 3855 4.408921 CCATTCCACCCATACTCTACTCAA 59.591 45.833 0.00 0.00 0.00 3.02
2563 3861 1.898863 AGCCATTCCACCCATACTCT 58.101 50.000 0.00 0.00 0.00 3.24
2592 3890 8.543774 AGCTCTGAAGAATAGGTTTTAAGATCA 58.456 33.333 0.00 0.00 0.00 2.92
2599 3897 5.505181 TGGAGCTCTGAAGAATAGGTTTT 57.495 39.130 14.64 0.00 0.00 2.43
2655 3953 3.862267 CAGGAGCTGTTTAATCTCAGACG 59.138 47.826 0.00 0.00 34.02 4.18
2702 4000 3.429135 GGTACCATCTCAACGAGTTCTCC 60.429 52.174 7.15 0.00 0.00 3.71
2739 4037 1.605453 GGCCGGGTATTCTTCCACA 59.395 57.895 2.18 0.00 0.00 4.17
2770 4068 4.187694 CAAGTTCTACCTTGGAGATGCTC 58.812 47.826 0.00 0.00 38.51 4.26
2848 4146 1.748403 GAGGGGTCAGCGCATGATA 59.252 57.895 11.47 0.00 40.92 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.