Multiple sequence alignment - TraesCS2B01G098700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G098700 chr2B 100.000 3342 0 0 1 3342 58535561 58538902 0.000000e+00 6172.0
1 TraesCS2B01G098700 chr2B 90.636 1463 83 21 808 2241 58092146 58090709 0.000000e+00 1893.0
2 TraesCS2B01G098700 chr2B 90.303 1485 88 25 780 2217 58312061 58310586 0.000000e+00 1893.0
3 TraesCS2B01G098700 chr2B 88.691 1459 87 28 785 2170 58344286 58345739 0.000000e+00 1709.0
4 TraesCS2B01G098700 chr2B 94.764 974 44 3 1269 2241 58237226 58236259 0.000000e+00 1509.0
5 TraesCS2B01G098700 chr2B 84.921 630 59 16 2727 3342 543616369 543615762 3.690000e-169 604.0
6 TraesCS2B01G098700 chr2B 83.437 646 65 16 2730 3342 17693892 17693256 2.250000e-156 562.0
7 TraesCS2B01G098700 chr2B 92.105 190 6 2 2533 2713 58345825 58346014 3.310000e-65 259.0
8 TraesCS2B01G098700 chr2B 78.282 419 44 25 780 1159 58238835 58238425 3.350000e-55 226.0
9 TraesCS2B01G098700 chr2B 83.871 248 21 10 1245 1487 57787781 57788014 5.610000e-53 219.0
10 TraesCS2B01G098700 chr2B 85.256 156 11 6 2570 2713 58236235 58236080 2.080000e-32 150.0
11 TraesCS2B01G098700 chr2B 78.146 302 18 24 2339 2636 58310686 58310429 7.470000e-32 148.0
12 TraesCS2B01G098700 chr2B 97.500 80 1 1 2339 2418 58345687 58345765 5.820000e-28 135.0
13 TraesCS2B01G098700 chr2B 81.098 164 10 13 2339 2502 58236377 58236235 9.800000e-21 111.0
14 TraesCS2B01G098700 chr2B 92.424 66 2 1 2461 2523 58345768 58345833 1.280000e-14 91.6
15 TraesCS2B01G098700 chr2D 89.421 1503 80 31 808 2241 35242474 35240982 0.000000e+00 1821.0
16 TraesCS2B01G098700 chr2D 89.912 1368 86 24 918 2241 35314932 35316291 0.000000e+00 1714.0
17 TraesCS2B01G098700 chr2D 88.057 628 61 12 2727 3342 629482064 629482689 0.000000e+00 732.0
18 TraesCS2B01G098700 chr2D 81.081 333 18 17 2339 2668 35316166 35316456 1.210000e-54 224.0
19 TraesCS2B01G098700 chr2D 77.865 384 27 31 2339 2713 35241107 35240773 5.690000e-43 185.0
20 TraesCS2B01G098700 chr2D 87.273 165 10 4 2553 2709 35501318 35501479 9.530000e-41 178.0
21 TraesCS2B01G098700 chr2D 86.765 136 12 3 777 906 35314671 35314806 2.690000e-31 147.0
22 TraesCS2B01G098700 chr2D 90.000 60 6 0 2345 2404 35332494 35332553 9.940000e-11 78.7
23 TraesCS2B01G098700 chr2A 88.317 1515 105 26 780 2241 38516715 38515220 0.000000e+00 1751.0
24 TraesCS2B01G098700 chr2A 88.493 1486 100 25 808 2241 38569711 38571177 0.000000e+00 1731.0
25 TraesCS2B01G098700 chr2A 91.988 674 49 3 1 672 775969426 775968756 0.000000e+00 941.0
26 TraesCS2B01G098700 chr2A 91.373 255 19 3 1924 2175 38398170 38397916 2.470000e-91 346.0
27 TraesCS2B01G098700 chr2A 80.399 301 18 19 2339 2634 38571067 38571331 1.220000e-44 191.0
28 TraesCS2B01G098700 chr2A 79.705 271 17 16 2339 2607 38515330 38515096 9.600000e-36 161.0
29 TraesCS2B01G098700 chr5B 94.768 669 33 2 1 669 37077373 37076707 0.000000e+00 1040.0
30 TraesCS2B01G098700 chr5B 92.411 672 42 2 1 672 657724223 657723561 0.000000e+00 950.0
31 TraesCS2B01G098700 chr5B 91.928 669 48 3 1 669 546696165 546695503 0.000000e+00 931.0
32 TraesCS2B01G098700 chr5B 86.386 617 73 7 2733 3342 648685443 648684831 0.000000e+00 664.0
33 TraesCS2B01G098700 chr4D 92.899 676 46 2 1 675 50460123 50459449 0.000000e+00 981.0
34 TraesCS2B01G098700 chr4D 92.113 672 49 4 1 671 434957679 434958347 0.000000e+00 944.0
35 TraesCS2B01G098700 chr4D 91.667 48 2 2 1509 1555 300858221 300858175 7.740000e-07 65.8
36 TraesCS2B01G098700 chr1A 92.467 677 49 2 1 675 365186474 365187150 0.000000e+00 966.0
37 TraesCS2B01G098700 chr4B 93.192 661 35 6 1 660 534798008 534798659 0.000000e+00 963.0
38 TraesCS2B01G098700 chr4B 86.039 616 69 11 2742 3342 25966320 25965707 0.000000e+00 645.0
39 TraesCS2B01G098700 chr6B 92.239 670 44 3 1 669 706655475 706656137 0.000000e+00 942.0
40 TraesCS2B01G098700 chr6B 87.143 630 65 12 2727 3342 681840366 681839739 0.000000e+00 701.0
41 TraesCS2B01G098700 chr1B 85.318 613 82 5 2731 3342 209135623 209136228 7.870000e-176 627.0
42 TraesCS2B01G098700 chr7B 84.912 570 70 6 2786 3342 2335802 2336368 2.250000e-156 562.0
43 TraesCS2B01G098700 chr1D 84.615 533 75 5 2815 3342 342119488 342118958 1.060000e-144 523.0
44 TraesCS2B01G098700 chr7A 81.579 608 96 12 2741 3340 731693711 731693112 3.880000e-134 488.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G098700 chr2B 58535561 58538902 3341 False 6172.00 6172 100.000000 1 3342 1 chr2B.!!$F2 3341
1 TraesCS2B01G098700 chr2B 58090709 58092146 1437 True 1893.00 1893 90.636000 808 2241 1 chr2B.!!$R2 1433
2 TraesCS2B01G098700 chr2B 58310429 58312061 1632 True 1020.50 1893 84.224500 780 2636 2 chr2B.!!$R5 1856
3 TraesCS2B01G098700 chr2B 543615762 543616369 607 True 604.00 604 84.921000 2727 3342 1 chr2B.!!$R3 615
4 TraesCS2B01G098700 chr2B 17693256 17693892 636 True 562.00 562 83.437000 2730 3342 1 chr2B.!!$R1 612
5 TraesCS2B01G098700 chr2B 58344286 58346014 1728 False 548.65 1709 92.680000 785 2713 4 chr2B.!!$F3 1928
6 TraesCS2B01G098700 chr2B 58236080 58238835 2755 True 499.00 1509 84.850000 780 2713 4 chr2B.!!$R4 1933
7 TraesCS2B01G098700 chr2D 35240773 35242474 1701 True 1003.00 1821 83.643000 808 2713 2 chr2D.!!$R1 1905
8 TraesCS2B01G098700 chr2D 629482064 629482689 625 False 732.00 732 88.057000 2727 3342 1 chr2D.!!$F3 615
9 TraesCS2B01G098700 chr2D 35314671 35316456 1785 False 695.00 1714 85.919333 777 2668 3 chr2D.!!$F4 1891
10 TraesCS2B01G098700 chr2A 38569711 38571331 1620 False 961.00 1731 84.446000 808 2634 2 chr2A.!!$F1 1826
11 TraesCS2B01G098700 chr2A 38515096 38516715 1619 True 956.00 1751 84.011000 780 2607 2 chr2A.!!$R3 1827
12 TraesCS2B01G098700 chr2A 775968756 775969426 670 True 941.00 941 91.988000 1 672 1 chr2A.!!$R2 671
13 TraesCS2B01G098700 chr5B 37076707 37077373 666 True 1040.00 1040 94.768000 1 669 1 chr5B.!!$R1 668
14 TraesCS2B01G098700 chr5B 657723561 657724223 662 True 950.00 950 92.411000 1 672 1 chr5B.!!$R4 671
15 TraesCS2B01G098700 chr5B 546695503 546696165 662 True 931.00 931 91.928000 1 669 1 chr5B.!!$R2 668
16 TraesCS2B01G098700 chr5B 648684831 648685443 612 True 664.00 664 86.386000 2733 3342 1 chr5B.!!$R3 609
17 TraesCS2B01G098700 chr4D 50459449 50460123 674 True 981.00 981 92.899000 1 675 1 chr4D.!!$R1 674
18 TraesCS2B01G098700 chr4D 434957679 434958347 668 False 944.00 944 92.113000 1 671 1 chr4D.!!$F1 670
19 TraesCS2B01G098700 chr1A 365186474 365187150 676 False 966.00 966 92.467000 1 675 1 chr1A.!!$F1 674
20 TraesCS2B01G098700 chr4B 534798008 534798659 651 False 963.00 963 93.192000 1 660 1 chr4B.!!$F1 659
21 TraesCS2B01G098700 chr4B 25965707 25966320 613 True 645.00 645 86.039000 2742 3342 1 chr4B.!!$R1 600
22 TraesCS2B01G098700 chr6B 706655475 706656137 662 False 942.00 942 92.239000 1 669 1 chr6B.!!$F1 668
23 TraesCS2B01G098700 chr6B 681839739 681840366 627 True 701.00 701 87.143000 2727 3342 1 chr6B.!!$R1 615
24 TraesCS2B01G098700 chr1B 209135623 209136228 605 False 627.00 627 85.318000 2731 3342 1 chr1B.!!$F1 611
25 TraesCS2B01G098700 chr7B 2335802 2336368 566 False 562.00 562 84.912000 2786 3342 1 chr7B.!!$F1 556
26 TraesCS2B01G098700 chr1D 342118958 342119488 530 True 523.00 523 84.615000 2815 3342 1 chr1D.!!$R1 527
27 TraesCS2B01G098700 chr7A 731693112 731693711 599 True 488.00 488 81.579000 2741 3340 1 chr7A.!!$R1 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
660 672 0.109723 TTTTTGCGGGGTCTGCTAGT 59.890 50.0 0.30 0.0 0.0 2.57 F
2258 3562 0.179020 ACCCCCATGTATCATGTGCG 60.179 55.0 8.57 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2355 3659 0.033504 TGACGAACCTGCAGTCCTTC 59.966 55.0 13.81 9.17 34.24 3.46 R
3091 4478 1.037579 TGACGATGAGGACGAGGCAT 61.038 55.0 0.00 0.00 34.70 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 108 4.896829 CCCGAGGAGCCCGCTCTA 62.897 72.222 15.90 0.00 42.38 2.43
364 371 1.379977 AGGAGGATTGAGCGTCCGA 60.380 57.895 2.74 0.00 45.15 4.55
397 404 4.072088 GTCCAGTTTGCCGCGACG 62.072 66.667 8.23 0.00 0.00 5.12
414 421 4.194720 GTCGCCGCCGTCAGATCT 62.195 66.667 0.00 0.00 35.54 2.75
617 629 2.049433 CGCGACCTTCGTCAACCT 60.049 61.111 0.00 0.00 42.81 3.50
630 642 1.786579 GTCAACCTGCAAATGCGTTTC 59.213 47.619 0.00 0.00 45.83 2.78
660 672 0.109723 TTTTTGCGGGGTCTGCTAGT 59.890 50.000 0.30 0.00 0.00 2.57
661 673 0.978151 TTTTGCGGGGTCTGCTAGTA 59.022 50.000 0.30 0.00 0.00 1.82
675 687 6.477360 GGTCTGCTAGTATTGCTCTAAGAAAC 59.523 42.308 0.00 0.00 0.00 2.78
676 688 6.477360 GTCTGCTAGTATTGCTCTAAGAAACC 59.523 42.308 0.00 0.00 0.00 3.27
677 689 6.154534 TCTGCTAGTATTGCTCTAAGAAACCA 59.845 38.462 0.00 0.00 0.00 3.67
678 690 6.707290 TGCTAGTATTGCTCTAAGAAACCAA 58.293 36.000 0.00 0.00 0.00 3.67
679 691 6.818644 TGCTAGTATTGCTCTAAGAAACCAAG 59.181 38.462 0.00 0.00 0.00 3.61
680 692 6.819146 GCTAGTATTGCTCTAAGAAACCAAGT 59.181 38.462 0.00 0.00 0.00 3.16
681 693 7.010645 GCTAGTATTGCTCTAAGAAACCAAGTC 59.989 40.741 0.00 0.00 0.00 3.01
682 694 6.769512 AGTATTGCTCTAAGAAACCAAGTCA 58.230 36.000 0.00 0.00 0.00 3.41
683 695 6.876257 AGTATTGCTCTAAGAAACCAAGTCAG 59.124 38.462 0.00 0.00 0.00 3.51
684 696 4.008074 TGCTCTAAGAAACCAAGTCAGG 57.992 45.455 0.00 0.00 0.00 3.86
685 697 3.391296 TGCTCTAAGAAACCAAGTCAGGT 59.609 43.478 0.00 0.00 45.91 4.00
686 698 4.591498 TGCTCTAAGAAACCAAGTCAGGTA 59.409 41.667 0.00 0.00 42.25 3.08
687 699 5.071250 TGCTCTAAGAAACCAAGTCAGGTAA 59.929 40.000 0.00 0.00 42.25 2.85
688 700 5.408909 GCTCTAAGAAACCAAGTCAGGTAAC 59.591 44.000 0.00 0.00 42.25 2.50
703 715 2.722094 GGTAACTGGTGGATGCATTCA 58.278 47.619 2.63 2.63 0.00 2.57
704 716 3.290710 GGTAACTGGTGGATGCATTCAT 58.709 45.455 11.77 0.00 35.17 2.57
705 717 3.701040 GGTAACTGGTGGATGCATTCATT 59.299 43.478 11.77 3.79 31.96 2.57
706 718 4.160252 GGTAACTGGTGGATGCATTCATTT 59.840 41.667 11.77 5.27 31.96 2.32
707 719 4.460948 AACTGGTGGATGCATTCATTTC 57.539 40.909 11.77 5.06 31.96 2.17
708 720 3.433343 ACTGGTGGATGCATTCATTTCA 58.567 40.909 11.77 9.36 31.96 2.69
709 721 3.833650 ACTGGTGGATGCATTCATTTCAA 59.166 39.130 11.77 0.00 31.96 2.69
710 722 4.178540 CTGGTGGATGCATTCATTTCAAC 58.821 43.478 11.77 0.00 31.96 3.18
711 723 3.181397 GGTGGATGCATTCATTTCAACG 58.819 45.455 11.77 0.00 31.96 4.10
712 724 3.181397 GTGGATGCATTCATTTCAACGG 58.819 45.455 11.77 0.00 31.96 4.44
713 725 2.824936 TGGATGCATTCATTTCAACGGT 59.175 40.909 2.63 0.00 31.96 4.83
714 726 3.257873 TGGATGCATTCATTTCAACGGTT 59.742 39.130 2.63 0.00 31.96 4.44
715 727 4.244862 GGATGCATTCATTTCAACGGTTT 58.755 39.130 0.00 0.00 31.96 3.27
716 728 4.327087 GGATGCATTCATTTCAACGGTTTC 59.673 41.667 0.00 0.00 31.96 2.78
717 729 4.313277 TGCATTCATTTCAACGGTTTCA 57.687 36.364 0.00 0.00 0.00 2.69
718 730 4.880759 TGCATTCATTTCAACGGTTTCAT 58.119 34.783 0.00 0.00 0.00 2.57
719 731 5.295950 TGCATTCATTTCAACGGTTTCATT 58.704 33.333 0.00 0.00 0.00 2.57
720 732 5.404968 TGCATTCATTTCAACGGTTTCATTC 59.595 36.000 0.00 0.00 0.00 2.67
721 733 5.404968 GCATTCATTTCAACGGTTTCATTCA 59.595 36.000 0.00 0.00 0.00 2.57
722 734 6.073873 GCATTCATTTCAACGGTTTCATTCAA 60.074 34.615 0.00 0.00 0.00 2.69
723 735 6.820470 TTCATTTCAACGGTTTCATTCAAC 57.180 33.333 0.00 0.00 0.00 3.18
724 736 5.285651 TCATTTCAACGGTTTCATTCAACC 58.714 37.500 0.00 0.00 42.68 3.77
725 737 4.720649 TTTCAACGGTTTCATTCAACCA 57.279 36.364 3.61 0.00 45.97 3.67
726 738 3.701532 TCAACGGTTTCATTCAACCAC 57.298 42.857 3.61 0.00 45.97 4.16
727 739 3.017442 TCAACGGTTTCATTCAACCACA 58.983 40.909 3.61 0.00 45.97 4.17
728 740 3.634448 TCAACGGTTTCATTCAACCACAT 59.366 39.130 3.61 0.00 45.97 3.21
729 741 4.822350 TCAACGGTTTCATTCAACCACATA 59.178 37.500 3.61 0.00 45.97 2.29
730 742 5.475220 TCAACGGTTTCATTCAACCACATAT 59.525 36.000 3.61 0.00 45.97 1.78
731 743 5.309323 ACGGTTTCATTCAACCACATATG 57.691 39.130 0.00 0.00 45.97 1.78
732 744 4.104776 CGGTTTCATTCAACCACATATGC 58.895 43.478 1.58 0.00 45.97 3.14
733 745 4.380339 CGGTTTCATTCAACCACATATGCA 60.380 41.667 1.58 0.00 45.97 3.96
734 746 4.864247 GGTTTCATTCAACCACATATGCAC 59.136 41.667 1.58 0.00 45.12 4.57
735 747 5.336690 GGTTTCATTCAACCACATATGCACT 60.337 40.000 1.58 0.00 45.12 4.40
736 748 4.968812 TCATTCAACCACATATGCACTG 57.031 40.909 1.58 0.00 0.00 3.66
737 749 3.129113 TCATTCAACCACATATGCACTGC 59.871 43.478 1.58 0.00 0.00 4.40
738 750 2.197283 TCAACCACATATGCACTGCA 57.803 45.000 6.09 6.09 44.86 4.41
752 764 5.050644 TGCACTGCATATTCTTTTGACTG 57.949 39.130 0.00 0.00 31.71 3.51
753 765 4.761227 TGCACTGCATATTCTTTTGACTGA 59.239 37.500 0.00 0.00 31.71 3.41
754 766 5.241285 TGCACTGCATATTCTTTTGACTGAA 59.759 36.000 0.00 0.00 31.71 3.02
755 767 6.151691 GCACTGCATATTCTTTTGACTGAAA 58.848 36.000 0.00 0.00 0.00 2.69
756 768 6.810182 GCACTGCATATTCTTTTGACTGAAAT 59.190 34.615 0.00 0.00 0.00 2.17
757 769 7.201410 GCACTGCATATTCTTTTGACTGAAATG 60.201 37.037 0.00 0.00 0.00 2.32
758 770 7.274904 CACTGCATATTCTTTTGACTGAAATGG 59.725 37.037 0.00 0.00 0.00 3.16
759 771 6.632909 TGCATATTCTTTTGACTGAAATGGG 58.367 36.000 0.00 0.00 0.00 4.00
760 772 6.044682 GCATATTCTTTTGACTGAAATGGGG 58.955 40.000 0.00 0.00 0.00 4.96
761 773 6.351286 GCATATTCTTTTGACTGAAATGGGGT 60.351 38.462 0.00 0.00 0.00 4.95
762 774 7.147915 GCATATTCTTTTGACTGAAATGGGGTA 60.148 37.037 0.00 0.00 0.00 3.69
763 775 8.748412 CATATTCTTTTGACTGAAATGGGGTAA 58.252 33.333 0.00 0.00 0.00 2.85
764 776 6.648879 TTCTTTTGACTGAAATGGGGTAAG 57.351 37.500 0.00 0.00 0.00 2.34
765 777 5.076873 TCTTTTGACTGAAATGGGGTAAGG 58.923 41.667 0.00 0.00 0.00 2.69
766 778 4.463050 TTTGACTGAAATGGGGTAAGGT 57.537 40.909 0.00 0.00 0.00 3.50
767 779 3.433306 TGACTGAAATGGGGTAAGGTG 57.567 47.619 0.00 0.00 0.00 4.00
768 780 2.041081 TGACTGAAATGGGGTAAGGTGG 59.959 50.000 0.00 0.00 0.00 4.61
769 781 2.041216 GACTGAAATGGGGTAAGGTGGT 59.959 50.000 0.00 0.00 0.00 4.16
770 782 2.225017 ACTGAAATGGGGTAAGGTGGTG 60.225 50.000 0.00 0.00 0.00 4.17
771 783 1.076350 TGAAATGGGGTAAGGTGGTGG 59.924 52.381 0.00 0.00 0.00 4.61
772 784 1.076513 GAAATGGGGTAAGGTGGTGGT 59.923 52.381 0.00 0.00 0.00 4.16
773 785 0.407918 AATGGGGTAAGGTGGTGGTG 59.592 55.000 0.00 0.00 0.00 4.17
774 786 2.035155 GGGGTAAGGTGGTGGTGC 59.965 66.667 0.00 0.00 0.00 5.01
775 787 2.836187 GGGGTAAGGTGGTGGTGCA 61.836 63.158 0.00 0.00 0.00 4.57
836 850 5.088739 CGCATTCAACCAAGTTTATGACTC 58.911 41.667 0.00 0.00 37.72 3.36
841 855 4.509970 TCAACCAAGTTTATGACTCGTGTG 59.490 41.667 0.00 0.00 37.72 3.82
850 864 2.787601 TGACTCGTGTGTCTGTTACC 57.212 50.000 0.00 0.00 37.79 2.85
858 872 1.226746 GTGTCTGTTACCACTGCACC 58.773 55.000 0.00 0.00 0.00 5.01
860 874 2.036733 GTGTCTGTTACCACTGCACCTA 59.963 50.000 0.00 0.00 0.00 3.08
864 878 1.071071 TGTTACCACTGCACCTACACC 59.929 52.381 0.00 0.00 0.00 4.16
912 934 9.277783 GTAACTGCATTTTCATGGATATAGAGT 57.722 33.333 0.00 0.00 28.97 3.24
941 1103 2.890808 TCAGTCAACCACTCACTCAC 57.109 50.000 0.00 0.00 30.26 3.51
949 1111 1.372683 CACTCACTCACCCCCACTG 59.627 63.158 0.00 0.00 0.00 3.66
957 1119 4.938756 ACCCCCACTGCCCTTCCA 62.939 66.667 0.00 0.00 0.00 3.53
958 1120 4.366684 CCCCCACTGCCCTTCCAC 62.367 72.222 0.00 0.00 0.00 4.02
959 1121 3.260100 CCCCACTGCCCTTCCACT 61.260 66.667 0.00 0.00 0.00 4.00
960 1122 2.034687 CCCACTGCCCTTCCACTG 59.965 66.667 0.00 0.00 0.00 3.66
977 1146 3.580458 CCACTGCACCTAGGCTATAAGAT 59.420 47.826 9.30 0.00 34.04 2.40
1072 1262 1.888436 CTCAAGCCTAGTGCCGGTGA 61.888 60.000 1.90 0.00 42.71 4.02
1130 1324 3.004944 GGTAACAAACTGCGAAATTCCCA 59.995 43.478 0.00 0.00 0.00 4.37
1202 1406 2.223947 ACATTTTTCAGACGGTTTGCCC 60.224 45.455 0.00 0.00 0.00 5.36
1210 1431 2.212900 GACGGTTTGCCCAATCTGCC 62.213 60.000 0.00 0.00 0.00 4.85
1376 2667 4.097361 GGGCCCTCTTCCACGACC 62.097 72.222 17.04 0.00 0.00 4.79
1381 2672 2.651361 CTCTTCCACGACCGCACT 59.349 61.111 0.00 0.00 0.00 4.40
1387 2678 1.885388 CCACGACCGCACTGTCAAA 60.885 57.895 0.00 0.00 34.88 2.69
1420 2711 2.430610 GCTGCTCCTGGAGACCGAT 61.431 63.158 27.53 0.00 33.10 4.18
1994 3285 2.917227 TGCTGCTCGTGGACCAGA 60.917 61.111 0.00 0.00 0.00 3.86
2215 3519 2.299013 AGACGTGATGGTGTGTGTATGT 59.701 45.455 0.00 0.00 0.00 2.29
2216 3520 3.508402 AGACGTGATGGTGTGTGTATGTA 59.492 43.478 0.00 0.00 0.00 2.29
2217 3521 3.581755 ACGTGATGGTGTGTGTATGTAC 58.418 45.455 0.00 0.00 0.00 2.90
2254 3558 3.040965 GGCACCCCCATGTATCATG 57.959 57.895 3.11 3.11 0.00 3.07
2255 3559 0.185901 GGCACCCCCATGTATCATGT 59.814 55.000 8.57 0.00 0.00 3.21
2256 3560 1.321474 GCACCCCCATGTATCATGTG 58.679 55.000 8.57 2.49 0.00 3.21
2257 3561 1.321474 CACCCCCATGTATCATGTGC 58.679 55.000 8.57 0.00 0.00 4.57
2258 3562 0.179020 ACCCCCATGTATCATGTGCG 60.179 55.000 8.57 0.00 0.00 5.34
2259 3563 0.179020 CCCCCATGTATCATGTGCGT 60.179 55.000 8.57 0.00 0.00 5.24
2260 3564 1.679139 CCCCATGTATCATGTGCGTT 58.321 50.000 8.57 0.00 0.00 4.84
2261 3565 2.023673 CCCCATGTATCATGTGCGTTT 58.976 47.619 8.57 0.00 0.00 3.60
2262 3566 2.223548 CCCCATGTATCATGTGCGTTTG 60.224 50.000 8.57 0.00 0.00 2.93
2263 3567 2.453080 CCATGTATCATGTGCGTTTGC 58.547 47.619 8.57 0.00 43.20 3.68
2281 3585 2.470196 GCATGCTTGCTGTATGAGTG 57.530 50.000 16.80 0.00 45.77 3.51
2282 3586 1.741706 GCATGCTTGCTGTATGAGTGT 59.258 47.619 16.80 0.00 45.77 3.55
2283 3587 2.477357 GCATGCTTGCTGTATGAGTGTG 60.477 50.000 16.80 0.00 45.77 3.82
2284 3588 1.159285 TGCTTGCTGTATGAGTGTGC 58.841 50.000 0.00 0.00 0.00 4.57
2285 3589 1.159285 GCTTGCTGTATGAGTGTGCA 58.841 50.000 0.00 0.00 0.00 4.57
2286 3590 1.741706 GCTTGCTGTATGAGTGTGCAT 59.258 47.619 0.00 0.00 33.50 3.96
2287 3591 2.477357 GCTTGCTGTATGAGTGTGCATG 60.477 50.000 0.00 0.00 33.50 4.06
2288 3592 1.089112 TGCTGTATGAGTGTGCATGC 58.911 50.000 11.82 11.82 0.00 4.06
2289 3593 1.339342 TGCTGTATGAGTGTGCATGCT 60.339 47.619 20.33 0.00 32.89 3.79
2290 3594 1.063616 GCTGTATGAGTGTGCATGCTG 59.936 52.381 20.33 0.00 34.57 4.41
2291 3595 1.063616 CTGTATGAGTGTGCATGCTGC 59.936 52.381 20.33 12.29 45.29 5.25
2292 3596 0.379669 GTATGAGTGTGCATGCTGCC 59.620 55.000 20.33 7.42 44.23 4.85
2293 3597 0.253894 TATGAGTGTGCATGCTGCCT 59.746 50.000 20.33 11.10 44.23 4.75
2294 3598 1.313091 ATGAGTGTGCATGCTGCCTG 61.313 55.000 20.33 0.00 44.23 4.85
2295 3599 3.338126 GAGTGTGCATGCTGCCTGC 62.338 63.158 20.82 20.82 44.23 4.85
2296 3600 4.430765 GTGTGCATGCTGCCTGCC 62.431 66.667 23.79 16.31 44.23 4.85
2297 3601 4.671590 TGTGCATGCTGCCTGCCT 62.672 61.111 23.79 0.00 44.23 4.75
2298 3602 4.129737 GTGCATGCTGCCTGCCTG 62.130 66.667 23.79 3.66 44.23 4.85
2299 3603 4.671590 TGCATGCTGCCTGCCTGT 62.672 61.111 23.79 0.00 44.23 4.00
2300 3604 2.438975 GCATGCTGCCTGCCTGTA 60.439 61.111 17.59 0.00 42.00 2.74
2301 3605 2.768492 GCATGCTGCCTGCCTGTAC 61.768 63.158 17.59 0.00 42.00 2.90
2302 3606 2.117156 CATGCTGCCTGCCTGTACC 61.117 63.158 0.00 0.00 42.00 3.34
2303 3607 2.304056 ATGCTGCCTGCCTGTACCT 61.304 57.895 0.00 0.00 42.00 3.08
2304 3608 2.437359 GCTGCCTGCCTGTACCTG 60.437 66.667 0.00 0.00 35.15 4.00
2305 3609 2.959484 GCTGCCTGCCTGTACCTGA 61.959 63.158 0.00 0.00 35.15 3.86
2306 3610 1.910722 CTGCCTGCCTGTACCTGAT 59.089 57.895 0.00 0.00 0.00 2.90
2307 3611 0.463295 CTGCCTGCCTGTACCTGATG 60.463 60.000 0.00 0.00 0.00 3.07
2308 3612 1.153086 GCCTGCCTGTACCTGATGG 60.153 63.158 0.00 0.00 39.83 3.51
2309 3613 1.626356 GCCTGCCTGTACCTGATGGA 61.626 60.000 0.00 0.00 37.04 3.41
2310 3614 1.135094 CCTGCCTGTACCTGATGGAT 58.865 55.000 0.00 0.00 37.04 3.41
2311 3615 2.329267 CCTGCCTGTACCTGATGGATA 58.671 52.381 0.00 0.00 37.04 2.59
2312 3616 2.909006 CCTGCCTGTACCTGATGGATAT 59.091 50.000 0.00 0.00 37.04 1.63
2313 3617 3.307269 CCTGCCTGTACCTGATGGATATG 60.307 52.174 0.00 0.00 37.04 1.78
2314 3618 2.038952 TGCCTGTACCTGATGGATATGC 59.961 50.000 0.00 0.00 37.04 3.14
2315 3619 2.616510 GCCTGTACCTGATGGATATGCC 60.617 54.545 0.00 0.00 37.04 4.40
2316 3620 2.354103 CCTGTACCTGATGGATATGCCG 60.354 54.545 0.00 0.00 40.66 5.69
2317 3621 2.300152 CTGTACCTGATGGATATGCCGT 59.700 50.000 0.00 0.00 40.66 5.68
2318 3622 3.502356 TGTACCTGATGGATATGCCGTA 58.498 45.455 0.00 0.00 40.66 4.02
2319 3623 3.509967 TGTACCTGATGGATATGCCGTAG 59.490 47.826 0.00 0.00 40.66 3.51
2320 3624 2.609747 ACCTGATGGATATGCCGTAGT 58.390 47.619 0.00 0.00 40.66 2.73
2321 3625 3.774734 ACCTGATGGATATGCCGTAGTA 58.225 45.455 0.00 0.00 40.66 1.82
2322 3626 3.510360 ACCTGATGGATATGCCGTAGTAC 59.490 47.826 0.00 0.00 40.66 2.73
2323 3627 3.427638 CCTGATGGATATGCCGTAGTACG 60.428 52.174 15.86 15.86 40.66 3.67
2324 3628 3.414269 TGATGGATATGCCGTAGTACGA 58.586 45.455 23.95 5.36 46.05 3.43
2325 3629 3.439129 TGATGGATATGCCGTAGTACGAG 59.561 47.826 23.95 14.38 46.05 4.18
2326 3630 2.854963 TGGATATGCCGTAGTACGAGT 58.145 47.619 23.95 11.22 46.05 4.18
2327 3631 3.216800 TGGATATGCCGTAGTACGAGTT 58.783 45.455 23.95 9.87 46.05 3.01
2328 3632 3.633525 TGGATATGCCGTAGTACGAGTTT 59.366 43.478 23.95 8.20 46.05 2.66
2329 3633 4.821260 TGGATATGCCGTAGTACGAGTTTA 59.179 41.667 23.95 9.99 46.05 2.01
2330 3634 5.149977 GGATATGCCGTAGTACGAGTTTAC 58.850 45.833 23.95 10.44 46.05 2.01
2331 3635 5.049129 GGATATGCCGTAGTACGAGTTTACT 60.049 44.000 23.95 2.45 46.05 2.24
2332 3636 6.147821 GGATATGCCGTAGTACGAGTTTACTA 59.852 42.308 23.95 6.03 46.05 1.82
2333 3637 7.148340 GGATATGCCGTAGTACGAGTTTACTAT 60.148 40.741 23.95 9.98 46.05 2.12
2334 3638 5.160699 TGCCGTAGTACGAGTTTACTATG 57.839 43.478 23.95 4.25 46.05 2.23
2335 3639 4.875536 TGCCGTAGTACGAGTTTACTATGA 59.124 41.667 23.95 0.00 46.05 2.15
2336 3640 5.007039 TGCCGTAGTACGAGTTTACTATGAG 59.993 44.000 23.95 3.54 46.05 2.90
2337 3641 5.007136 GCCGTAGTACGAGTTTACTATGAGT 59.993 44.000 23.95 0.00 46.05 3.41
2338 3642 6.417327 CCGTAGTACGAGTTTACTATGAGTG 58.583 44.000 23.95 0.00 46.05 3.51
2339 3643 6.417327 CGTAGTACGAGTTTACTATGAGTGG 58.583 44.000 17.85 0.00 46.05 4.00
2340 3644 5.831702 AGTACGAGTTTACTATGAGTGGG 57.168 43.478 0.00 0.00 30.09 4.61
2341 3645 3.521947 ACGAGTTTACTATGAGTGGGC 57.478 47.619 0.00 0.00 0.00 5.36
2342 3646 2.829720 ACGAGTTTACTATGAGTGGGCA 59.170 45.455 0.00 0.00 0.00 5.36
2343 3647 3.119101 ACGAGTTTACTATGAGTGGGCAG 60.119 47.826 0.00 0.00 0.00 4.85
2344 3648 3.738281 CGAGTTTACTATGAGTGGGCAGG 60.738 52.174 0.00 0.00 0.00 4.85
2345 3649 2.505819 AGTTTACTATGAGTGGGCAGGG 59.494 50.000 0.00 0.00 0.00 4.45
2346 3650 1.507140 TTACTATGAGTGGGCAGGGG 58.493 55.000 0.00 0.00 0.00 4.79
2347 3651 0.399949 TACTATGAGTGGGCAGGGGG 60.400 60.000 0.00 0.00 0.00 5.40
2348 3652 1.384502 CTATGAGTGGGCAGGGGGA 60.385 63.158 0.00 0.00 0.00 4.81
2349 3653 1.384502 TATGAGTGGGCAGGGGGAG 60.385 63.158 0.00 0.00 0.00 4.30
2350 3654 2.914734 TATGAGTGGGCAGGGGGAGG 62.915 65.000 0.00 0.00 0.00 4.30
2356 3660 4.741239 GGCAGGGGGAGGTCAGGA 62.741 72.222 0.00 0.00 0.00 3.86
2357 3661 2.610859 GCAGGGGGAGGTCAGGAA 60.611 66.667 0.00 0.00 0.00 3.36
2358 3662 2.674220 GCAGGGGGAGGTCAGGAAG 61.674 68.421 0.00 0.00 0.00 3.46
2359 3663 1.997874 CAGGGGGAGGTCAGGAAGG 60.998 68.421 0.00 0.00 0.00 3.46
2360 3664 2.184631 AGGGGGAGGTCAGGAAGGA 61.185 63.158 0.00 0.00 0.00 3.36
2361 3665 1.996187 GGGGGAGGTCAGGAAGGAC 60.996 68.421 0.00 0.00 37.06 3.85
2362 3666 1.081277 GGGGAGGTCAGGAAGGACT 59.919 63.158 0.00 0.00 37.91 3.85
2363 3667 1.268283 GGGGAGGTCAGGAAGGACTG 61.268 65.000 0.00 0.00 37.91 3.51
2364 3668 1.599576 GGAGGTCAGGAAGGACTGC 59.400 63.158 0.00 0.00 38.36 4.40
2365 3669 1.194781 GGAGGTCAGGAAGGACTGCA 61.195 60.000 0.00 0.00 38.36 4.41
2366 3670 0.248843 GAGGTCAGGAAGGACTGCAG 59.751 60.000 13.48 13.48 38.36 4.41
2367 3671 1.197430 AGGTCAGGAAGGACTGCAGG 61.197 60.000 19.93 0.00 38.36 4.85
2368 3672 1.484444 GGTCAGGAAGGACTGCAGGT 61.484 60.000 19.93 3.31 38.36 4.00
2369 3673 0.398318 GTCAGGAAGGACTGCAGGTT 59.602 55.000 19.93 8.34 38.36 3.50
2370 3674 0.687354 TCAGGAAGGACTGCAGGTTC 59.313 55.000 19.93 16.51 38.36 3.62
2371 3675 0.671781 CAGGAAGGACTGCAGGTTCG 60.672 60.000 19.93 2.96 0.00 3.95
2372 3676 1.122019 AGGAAGGACTGCAGGTTCGT 61.122 55.000 19.93 15.36 0.00 3.85
2373 3677 0.670854 GGAAGGACTGCAGGTTCGTC 60.671 60.000 19.93 13.45 32.29 4.20
2374 3678 0.033504 GAAGGACTGCAGGTTCGTCA 59.966 55.000 19.93 0.00 33.12 4.35
2375 3679 0.468226 AAGGACTGCAGGTTCGTCAA 59.532 50.000 19.93 0.00 0.00 3.18
2376 3680 0.249911 AGGACTGCAGGTTCGTCAAC 60.250 55.000 19.93 0.00 0.00 3.18
2377 3681 0.531974 GGACTGCAGGTTCGTCAACA 60.532 55.000 19.93 0.00 33.70 3.33
2378 3682 0.582005 GACTGCAGGTTCGTCAACAC 59.418 55.000 19.93 0.00 33.70 3.32
2379 3683 0.814010 ACTGCAGGTTCGTCAACACC 60.814 55.000 19.93 0.00 33.70 4.16
2380 3684 0.813610 CTGCAGGTTCGTCAACACCA 60.814 55.000 5.57 0.00 35.25 4.17
2381 3685 0.393132 TGCAGGTTCGTCAACACCAA 60.393 50.000 0.00 0.00 35.25 3.67
2382 3686 0.307760 GCAGGTTCGTCAACACCAAG 59.692 55.000 0.00 0.00 35.25 3.61
2383 3687 1.663695 CAGGTTCGTCAACACCAAGT 58.336 50.000 0.00 0.00 35.25 3.16
2384 3688 2.828877 CAGGTTCGTCAACACCAAGTA 58.171 47.619 0.00 0.00 35.25 2.24
2385 3689 3.199677 CAGGTTCGTCAACACCAAGTAA 58.800 45.455 0.00 0.00 35.25 2.24
2386 3690 3.247648 CAGGTTCGTCAACACCAAGTAAG 59.752 47.826 0.00 0.00 35.25 2.34
2387 3691 3.133362 AGGTTCGTCAACACCAAGTAAGA 59.867 43.478 0.00 0.00 35.25 2.10
2388 3692 3.493503 GGTTCGTCAACACCAAGTAAGAG 59.506 47.826 0.00 0.00 33.70 2.85
2389 3693 2.750948 TCGTCAACACCAAGTAAGAGC 58.249 47.619 0.00 0.00 0.00 4.09
2390 3694 2.364324 TCGTCAACACCAAGTAAGAGCT 59.636 45.455 0.00 0.00 0.00 4.09
2391 3695 2.476619 CGTCAACACCAAGTAAGAGCTG 59.523 50.000 0.00 0.00 0.00 4.24
2392 3696 3.728845 GTCAACACCAAGTAAGAGCTGA 58.271 45.455 0.00 0.00 0.00 4.26
2393 3697 3.743396 GTCAACACCAAGTAAGAGCTGAG 59.257 47.826 0.00 0.00 0.00 3.35
2394 3698 2.464157 ACACCAAGTAAGAGCTGAGC 57.536 50.000 0.00 0.00 0.00 4.26
2395 3699 1.974236 ACACCAAGTAAGAGCTGAGCT 59.026 47.619 6.69 6.69 43.88 4.09
2396 3700 2.370189 ACACCAAGTAAGAGCTGAGCTT 59.630 45.455 9.00 0.00 39.88 3.74
2397 3701 3.578716 ACACCAAGTAAGAGCTGAGCTTA 59.421 43.478 9.00 0.00 39.88 3.09
2398 3702 4.180057 CACCAAGTAAGAGCTGAGCTTAG 58.820 47.826 9.00 0.05 39.88 2.18
2399 3703 3.835395 ACCAAGTAAGAGCTGAGCTTAGT 59.165 43.478 9.00 0.00 39.88 2.24
2400 3704 4.081917 ACCAAGTAAGAGCTGAGCTTAGTC 60.082 45.833 9.00 0.00 39.88 2.59
2401 3705 4.081972 CCAAGTAAGAGCTGAGCTTAGTCA 60.082 45.833 9.00 0.00 39.88 3.41
2402 3706 4.981806 AGTAAGAGCTGAGCTTAGTCAG 57.018 45.455 9.00 1.74 45.91 3.51
2410 3714 3.768632 GCTTAGTCAGCGACGTGG 58.231 61.111 0.00 0.00 39.29 4.94
2411 3715 2.445438 GCTTAGTCAGCGACGTGGC 61.445 63.158 15.38 15.38 39.29 5.01
2412 3716 1.805945 CTTAGTCAGCGACGTGGCC 60.806 63.158 19.50 3.98 37.67 5.36
2413 3717 2.214181 CTTAGTCAGCGACGTGGCCT 62.214 60.000 19.50 11.61 37.67 5.19
2414 3718 0.961857 TTAGTCAGCGACGTGGCCTA 60.962 55.000 19.50 10.60 37.67 3.93
2415 3719 1.374343 TAGTCAGCGACGTGGCCTAG 61.374 60.000 19.50 9.74 37.67 3.02
2416 3720 2.675423 TCAGCGACGTGGCCTAGT 60.675 61.111 19.50 3.33 0.00 2.57
2417 3721 2.507102 CAGCGACGTGGCCTAGTG 60.507 66.667 19.50 7.03 0.00 2.74
2418 3722 3.760035 AGCGACGTGGCCTAGTGG 61.760 66.667 19.50 6.56 0.00 4.00
2430 3734 2.005971 CCTAGTGGCAAGACGTAACC 57.994 55.000 0.00 0.00 0.00 2.85
2431 3735 1.625616 CTAGTGGCAAGACGTAACCG 58.374 55.000 0.00 0.00 40.83 4.44
2457 3761 3.294908 GCGTGTGCATGTGTATGTG 57.705 52.632 0.00 0.00 42.15 3.21
2458 3762 0.179192 GCGTGTGCATGTGTATGTGG 60.179 55.000 0.00 0.00 42.15 4.17
2459 3763 1.155889 CGTGTGCATGTGTATGTGGT 58.844 50.000 0.00 0.00 36.65 4.16
2460 3764 1.128507 CGTGTGCATGTGTATGTGGTC 59.871 52.381 0.00 0.00 36.65 4.02
2461 3765 1.128507 GTGTGCATGTGTATGTGGTCG 59.871 52.381 0.00 0.00 36.65 4.79
2462 3766 1.270571 TGTGCATGTGTATGTGGTCGT 60.271 47.619 0.00 0.00 36.65 4.34
2463 3767 1.128507 GTGCATGTGTATGTGGTCGTG 59.871 52.381 0.00 0.00 36.65 4.35
2464 3768 0.726827 GCATGTGTATGTGGTCGTGG 59.273 55.000 0.00 0.00 36.65 4.94
2465 3769 0.726827 CATGTGTATGTGGTCGTGGC 59.273 55.000 0.00 0.00 0.00 5.01
2466 3770 0.323302 ATGTGTATGTGGTCGTGGCA 59.677 50.000 0.00 0.00 0.00 4.92
2467 3771 0.323302 TGTGTATGTGGTCGTGGCAT 59.677 50.000 0.00 0.00 0.00 4.40
2468 3772 0.726827 GTGTATGTGGTCGTGGCATG 59.273 55.000 0.00 0.00 0.00 4.06
2469 3773 0.392327 TGTATGTGGTCGTGGCATGG 60.392 55.000 6.90 0.00 0.00 3.66
2470 3774 1.095228 GTATGTGGTCGTGGCATGGG 61.095 60.000 6.90 0.00 0.00 4.00
2471 3775 2.264120 TATGTGGTCGTGGCATGGGG 62.264 60.000 6.90 0.00 0.00 4.96
2522 3835 2.009051 ACCATGTATCATGTGTGCGTG 58.991 47.619 8.57 0.00 0.00 5.34
2523 3836 2.009051 CCATGTATCATGTGTGCGTGT 58.991 47.619 8.57 0.00 33.51 4.49
2524 3837 2.223089 CCATGTATCATGTGTGCGTGTG 60.223 50.000 8.57 0.00 33.51 3.82
2525 3838 0.795698 TGTATCATGTGTGCGTGTGC 59.204 50.000 0.00 0.00 43.20 4.57
2582 3899 3.687321 ATGCTGCCTGCCTGTACCG 62.687 63.158 0.00 0.00 42.00 4.02
2623 3949 4.375606 CGAATTCGCTGTAGTTTTCAACGA 60.376 41.667 15.93 0.00 36.23 3.85
2636 3962 1.286501 TCAACGACTGCAACACTGAC 58.713 50.000 0.00 0.00 0.00 3.51
2637 3963 0.043053 CAACGACTGCAACACTGACG 60.043 55.000 0.00 0.00 40.19 4.35
2713 4051 3.314635 GCAGGAGGCATTGATGAACTAAG 59.685 47.826 0.00 0.00 43.97 2.18
2714 4052 4.774124 CAGGAGGCATTGATGAACTAAGA 58.226 43.478 0.00 0.00 0.00 2.10
2715 4053 4.815308 CAGGAGGCATTGATGAACTAAGAG 59.185 45.833 0.00 0.00 0.00 2.85
2716 4054 3.563390 GGAGGCATTGATGAACTAAGAGC 59.437 47.826 0.00 0.00 0.00 4.09
2717 4055 4.194640 GAGGCATTGATGAACTAAGAGCA 58.805 43.478 0.00 0.00 0.00 4.26
2718 4056 4.789807 AGGCATTGATGAACTAAGAGCAT 58.210 39.130 0.00 0.00 0.00 3.79
2719 4057 4.820716 AGGCATTGATGAACTAAGAGCATC 59.179 41.667 0.00 0.00 39.02 3.91
2767 4106 2.727544 GCAAGTTTGGCGCTTGGA 59.272 55.556 7.64 0.00 42.44 3.53
2813 4153 2.852075 AAGGTCGCCCTGGGTTCA 60.852 61.111 15.56 0.00 41.56 3.18
2855 4195 1.009829 GCAAACTCGGCGATCTGATT 58.990 50.000 11.27 0.00 0.00 2.57
2920 4287 1.234615 AACATGCAAACTACGCCGCT 61.235 50.000 0.00 0.00 0.00 5.52
2933 4305 1.227292 GCCGCTAGCCACTACTTCC 60.227 63.158 9.66 0.00 34.35 3.46
2936 4308 1.442148 GCTAGCCACTACTTCCCGG 59.558 63.158 2.29 0.00 0.00 5.73
3014 4401 2.051971 TTGTCGTCGTCGTCACGG 60.052 61.111 0.00 0.00 46.70 4.94
3104 4491 3.785859 GGCCATGCCTCGTCCTCA 61.786 66.667 0.00 0.00 46.69 3.86
3113 4505 0.811915 CCTCGTCCTCATCGTCACTT 59.188 55.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.977544 CTCGTCCGACCACTCCCTT 60.978 63.158 0.00 0.00 0.00 3.95
260 267 4.287781 TTCTCGTTGGCGGCGACA 62.288 61.111 27.01 13.60 38.89 4.35
397 404 4.194720 AGATCTGACGGCGGCGAC 62.195 66.667 38.93 31.68 0.00 5.19
414 421 4.949856 CGTTAAACTAGTACTAGGGGGTCA 59.050 45.833 29.05 9.16 37.49 4.02
577 589 1.732683 CGGGTCAAAAACATGCGCC 60.733 57.895 4.18 0.00 0.00 6.53
660 672 6.173339 CCTGACTTGGTTTCTTAGAGCAATA 58.827 40.000 0.00 0.00 34.42 1.90
661 673 5.006386 CCTGACTTGGTTTCTTAGAGCAAT 58.994 41.667 0.00 0.00 34.42 3.56
675 687 1.697432 TCCACCAGTTACCTGACTTGG 59.303 52.381 0.00 0.00 41.50 3.61
676 688 3.338249 CATCCACCAGTTACCTGACTTG 58.662 50.000 0.00 0.00 41.50 3.16
677 689 2.290323 GCATCCACCAGTTACCTGACTT 60.290 50.000 0.00 0.00 41.50 3.01
678 690 1.279271 GCATCCACCAGTTACCTGACT 59.721 52.381 0.00 0.00 41.50 3.41
679 691 1.003118 TGCATCCACCAGTTACCTGAC 59.997 52.381 0.00 0.00 41.50 3.51
680 692 1.357137 TGCATCCACCAGTTACCTGA 58.643 50.000 0.00 0.00 41.50 3.86
681 693 2.425143 ATGCATCCACCAGTTACCTG 57.575 50.000 0.00 0.00 38.50 4.00
682 694 2.308570 TGAATGCATCCACCAGTTACCT 59.691 45.455 0.00 0.00 0.00 3.08
683 695 2.722094 TGAATGCATCCACCAGTTACC 58.278 47.619 0.00 0.00 0.00 2.85
684 696 4.989279 AATGAATGCATCCACCAGTTAC 57.011 40.909 0.00 0.00 32.35 2.50
685 697 5.015515 TGAAATGAATGCATCCACCAGTTA 58.984 37.500 0.00 0.00 32.35 2.24
686 698 3.833650 TGAAATGAATGCATCCACCAGTT 59.166 39.130 0.00 1.77 32.35 3.16
687 699 3.433343 TGAAATGAATGCATCCACCAGT 58.567 40.909 0.00 0.00 32.35 4.00
688 700 4.178540 GTTGAAATGAATGCATCCACCAG 58.821 43.478 0.00 0.00 32.35 4.00
689 701 3.367190 CGTTGAAATGAATGCATCCACCA 60.367 43.478 0.00 0.00 32.35 4.17
690 702 3.181397 CGTTGAAATGAATGCATCCACC 58.819 45.455 0.00 0.00 32.35 4.61
691 703 3.181397 CCGTTGAAATGAATGCATCCAC 58.819 45.455 0.00 0.00 32.35 4.02
692 704 2.824936 ACCGTTGAAATGAATGCATCCA 59.175 40.909 0.00 0.00 32.35 3.41
693 705 3.508744 ACCGTTGAAATGAATGCATCC 57.491 42.857 0.00 0.00 32.35 3.51
694 706 4.922692 TGAAACCGTTGAAATGAATGCATC 59.077 37.500 0.00 0.00 32.35 3.91
695 707 4.880759 TGAAACCGTTGAAATGAATGCAT 58.119 34.783 0.00 0.00 35.92 3.96
696 708 4.313277 TGAAACCGTTGAAATGAATGCA 57.687 36.364 0.00 0.00 0.00 3.96
697 709 5.404968 TGAATGAAACCGTTGAAATGAATGC 59.595 36.000 0.00 0.00 0.00 3.56
698 710 7.282916 GTTGAATGAAACCGTTGAAATGAATG 58.717 34.615 0.00 0.00 0.00 2.67
699 711 6.423604 GGTTGAATGAAACCGTTGAAATGAAT 59.576 34.615 0.00 0.00 40.28 2.57
700 712 5.751028 GGTTGAATGAAACCGTTGAAATGAA 59.249 36.000 0.00 0.00 40.28 2.57
701 713 5.285651 GGTTGAATGAAACCGTTGAAATGA 58.714 37.500 0.00 0.00 40.28 2.57
702 714 5.574815 GGTTGAATGAAACCGTTGAAATG 57.425 39.130 0.00 0.00 40.28 2.32
712 724 5.574055 CAGTGCATATGTGGTTGAATGAAAC 59.426 40.000 4.29 0.00 0.00 2.78
713 725 5.712004 CAGTGCATATGTGGTTGAATGAAA 58.288 37.500 4.29 0.00 0.00 2.69
714 726 4.380761 GCAGTGCATATGTGGTTGAATGAA 60.381 41.667 11.09 0.00 0.00 2.57
715 727 3.129113 GCAGTGCATATGTGGTTGAATGA 59.871 43.478 11.09 0.00 0.00 2.57
716 728 3.119424 TGCAGTGCATATGTGGTTGAATG 60.119 43.478 15.37 0.00 31.71 2.67
717 729 3.090790 TGCAGTGCATATGTGGTTGAAT 58.909 40.909 15.37 0.00 31.71 2.57
718 730 2.512705 TGCAGTGCATATGTGGTTGAA 58.487 42.857 15.37 0.00 31.71 2.69
719 731 2.197283 TGCAGTGCATATGTGGTTGA 57.803 45.000 15.37 0.00 31.71 3.18
730 742 4.761227 TCAGTCAAAAGAATATGCAGTGCA 59.239 37.500 22.22 22.22 44.86 4.57
731 743 5.300969 TCAGTCAAAAGAATATGCAGTGC 57.699 39.130 8.58 8.58 0.00 4.40
732 744 7.274904 CCATTTCAGTCAAAAGAATATGCAGTG 59.725 37.037 0.00 0.00 0.00 3.66
733 745 7.318141 CCATTTCAGTCAAAAGAATATGCAGT 58.682 34.615 0.00 0.00 0.00 4.40
734 746 6.755141 CCCATTTCAGTCAAAAGAATATGCAG 59.245 38.462 0.00 0.00 0.00 4.41
735 747 6.351202 CCCCATTTCAGTCAAAAGAATATGCA 60.351 38.462 0.00 0.00 0.00 3.96
736 748 6.044682 CCCCATTTCAGTCAAAAGAATATGC 58.955 40.000 0.00 0.00 0.00 3.14
737 749 7.174107 ACCCCATTTCAGTCAAAAGAATATG 57.826 36.000 0.00 0.00 0.00 1.78
738 750 8.893563 TTACCCCATTTCAGTCAAAAGAATAT 57.106 30.769 0.00 0.00 0.00 1.28
739 751 7.396055 CCTTACCCCATTTCAGTCAAAAGAATA 59.604 37.037 0.00 0.00 0.00 1.75
740 752 6.211384 CCTTACCCCATTTCAGTCAAAAGAAT 59.789 38.462 0.00 0.00 0.00 2.40
741 753 5.538433 CCTTACCCCATTTCAGTCAAAAGAA 59.462 40.000 0.00 0.00 0.00 2.52
742 754 5.076873 CCTTACCCCATTTCAGTCAAAAGA 58.923 41.667 0.00 0.00 0.00 2.52
743 755 4.832823 ACCTTACCCCATTTCAGTCAAAAG 59.167 41.667 0.00 0.00 0.00 2.27
744 756 4.586841 CACCTTACCCCATTTCAGTCAAAA 59.413 41.667 0.00 0.00 0.00 2.44
745 757 4.148838 CACCTTACCCCATTTCAGTCAAA 58.851 43.478 0.00 0.00 0.00 2.69
746 758 3.499563 CCACCTTACCCCATTTCAGTCAA 60.500 47.826 0.00 0.00 0.00 3.18
747 759 2.041081 CCACCTTACCCCATTTCAGTCA 59.959 50.000 0.00 0.00 0.00 3.41
748 760 2.041216 ACCACCTTACCCCATTTCAGTC 59.959 50.000 0.00 0.00 0.00 3.51
749 761 2.070573 ACCACCTTACCCCATTTCAGT 58.929 47.619 0.00 0.00 0.00 3.41
750 762 2.446435 CACCACCTTACCCCATTTCAG 58.554 52.381 0.00 0.00 0.00 3.02
751 763 1.076350 CCACCACCTTACCCCATTTCA 59.924 52.381 0.00 0.00 0.00 2.69
752 764 1.076513 ACCACCACCTTACCCCATTTC 59.923 52.381 0.00 0.00 0.00 2.17
753 765 1.163408 ACCACCACCTTACCCCATTT 58.837 50.000 0.00 0.00 0.00 2.32
754 766 0.407918 CACCACCACCTTACCCCATT 59.592 55.000 0.00 0.00 0.00 3.16
755 767 2.083715 CACCACCACCTTACCCCAT 58.916 57.895 0.00 0.00 0.00 4.00
756 768 2.836187 GCACCACCACCTTACCCCA 61.836 63.158 0.00 0.00 0.00 4.96
757 769 2.035155 GCACCACCACCTTACCCC 59.965 66.667 0.00 0.00 0.00 4.95
758 770 0.965363 CATGCACCACCACCTTACCC 60.965 60.000 0.00 0.00 0.00 3.69
759 771 0.251165 ACATGCACCACCACCTTACC 60.251 55.000 0.00 0.00 0.00 2.85
760 772 1.165270 GACATGCACCACCACCTTAC 58.835 55.000 0.00 0.00 0.00 2.34
761 773 0.767998 TGACATGCACCACCACCTTA 59.232 50.000 0.00 0.00 0.00 2.69
762 774 0.106268 TTGACATGCACCACCACCTT 60.106 50.000 0.00 0.00 0.00 3.50
763 775 0.538057 CTTGACATGCACCACCACCT 60.538 55.000 0.00 0.00 0.00 4.00
764 776 1.959085 CTTGACATGCACCACCACC 59.041 57.895 0.00 0.00 0.00 4.61
765 777 1.286880 GCTTGACATGCACCACCAC 59.713 57.895 8.37 0.00 0.00 4.16
766 778 0.754587 TTGCTTGACATGCACCACCA 60.755 50.000 15.02 0.00 40.40 4.17
767 779 0.038892 CTTGCTTGACATGCACCACC 60.039 55.000 15.02 0.00 40.40 4.61
768 780 0.038892 CCTTGCTTGACATGCACCAC 60.039 55.000 15.02 0.00 40.40 4.16
769 781 1.808531 GCCTTGCTTGACATGCACCA 61.809 55.000 15.02 1.94 40.40 4.17
770 782 1.080298 GCCTTGCTTGACATGCACC 60.080 57.895 15.02 4.24 40.40 5.01
771 783 1.080298 GGCCTTGCTTGACATGCAC 60.080 57.895 15.02 4.93 40.40 4.57
772 784 2.277591 GGGCCTTGCTTGACATGCA 61.278 57.895 11.69 11.69 38.80 3.96
773 785 2.575461 GGGCCTTGCTTGACATGC 59.425 61.111 0.84 6.38 0.00 4.06
774 786 1.304713 AGGGGCCTTGCTTGACATG 60.305 57.895 0.84 0.00 0.00 3.21
775 787 1.000396 GAGGGGCCTTGCTTGACAT 60.000 57.895 0.84 0.00 0.00 3.06
850 864 1.603802 CACAAAGGTGTAGGTGCAGTG 59.396 52.381 0.00 0.00 40.24 3.66
864 878 1.068588 TCCTGACTGACCGACACAAAG 59.931 52.381 0.00 0.00 0.00 2.77
941 1103 4.366684 GTGGAAGGGCAGTGGGGG 62.367 72.222 0.00 0.00 0.00 5.40
949 1111 1.078143 CTAGGTGCAGTGGAAGGGC 60.078 63.158 0.00 0.00 0.00 5.19
957 1119 3.508012 CGATCTTATAGCCTAGGTGCAGT 59.492 47.826 11.31 0.00 0.00 4.40
958 1120 3.759086 TCGATCTTATAGCCTAGGTGCAG 59.241 47.826 11.31 0.15 0.00 4.41
959 1121 3.759086 CTCGATCTTATAGCCTAGGTGCA 59.241 47.826 11.31 0.00 0.00 4.57
960 1122 4.011023 TCTCGATCTTATAGCCTAGGTGC 58.989 47.826 11.31 0.00 0.00 5.01
977 1146 2.092158 ACCCACTCTCATCTCATCTCGA 60.092 50.000 0.00 0.00 0.00 4.04
1008 1195 5.191722 ACTCTGCCTTACAAATATCCAAGGA 59.808 40.000 3.44 0.00 40.02 3.36
1072 1262 0.982704 AAGAGGAGCAGTGCAGATGT 59.017 50.000 19.20 0.00 0.00 3.06
1130 1324 4.380867 GCATTTGACACGGAAATGAAGGAT 60.381 41.667 8.95 0.00 41.44 3.24
1210 1431 3.908081 GCATTCCCTGCCATGGCG 61.908 66.667 30.87 23.82 45.66 5.69
1381 2672 2.379634 CGCGTCGCAGGATTTGACA 61.380 57.895 18.75 0.00 32.91 3.58
2017 3308 3.011760 CTTCTTCACGAACGGCGCC 62.012 63.158 19.07 19.07 46.04 6.53
2215 3519 0.179148 CACGCCACGAGCACATAGTA 60.179 55.000 0.00 0.00 44.04 1.82
2216 3520 1.446099 CACGCCACGAGCACATAGT 60.446 57.895 0.00 0.00 44.04 2.12
2217 3521 2.167219 CCACGCCACGAGCACATAG 61.167 63.158 0.00 0.00 44.04 2.23
2241 3545 1.679139 AACGCACATGATACATGGGG 58.321 50.000 14.42 12.99 0.00 4.96
2242 3546 2.795681 GCAAACGCACATGATACATGGG 60.796 50.000 14.70 12.14 0.00 4.00
2243 3547 2.159407 TGCAAACGCACATGATACATGG 60.159 45.455 14.70 6.35 33.43 3.66
2244 3548 3.134021 TGCAAACGCACATGATACATG 57.866 42.857 0.00 9.72 33.43 3.21
2245 3549 3.697982 CATGCAAACGCACATGATACAT 58.302 40.909 0.00 0.00 45.23 2.29
2246 3550 2.731654 GCATGCAAACGCACATGATACA 60.732 45.455 14.21 0.00 45.23 2.29
2247 3551 1.847999 GCATGCAAACGCACATGATAC 59.152 47.619 14.21 0.00 45.23 2.24
2248 3552 1.744522 AGCATGCAAACGCACATGATA 59.255 42.857 21.98 0.00 45.23 2.15
2249 3553 0.528924 AGCATGCAAACGCACATGAT 59.471 45.000 21.98 0.00 45.23 2.45
2250 3554 0.314618 AAGCATGCAAACGCACATGA 59.685 45.000 21.98 0.00 45.23 3.07
2251 3555 0.436913 CAAGCATGCAAACGCACATG 59.563 50.000 21.98 0.00 43.59 3.21
2252 3556 2.817035 CAAGCATGCAAACGCACAT 58.183 47.368 21.98 0.00 43.59 3.21
2253 3557 4.322696 CAAGCATGCAAACGCACA 57.677 50.000 21.98 0.00 43.59 4.57
2263 3567 2.477357 GCACACTCATACAGCAAGCATG 60.477 50.000 0.00 0.00 0.00 4.06
2264 3568 1.741706 GCACACTCATACAGCAAGCAT 59.258 47.619 0.00 0.00 0.00 3.79
2265 3569 1.159285 GCACACTCATACAGCAAGCA 58.841 50.000 0.00 0.00 0.00 3.91
2266 3570 1.159285 TGCACACTCATACAGCAAGC 58.841 50.000 0.00 0.00 31.42 4.01
2267 3571 2.477357 GCATGCACACTCATACAGCAAG 60.477 50.000 14.21 0.00 38.85 4.01
2268 3572 1.469703 GCATGCACACTCATACAGCAA 59.530 47.619 14.21 0.00 38.85 3.91
2269 3573 1.089112 GCATGCACACTCATACAGCA 58.911 50.000 14.21 0.00 39.79 4.41
2270 3574 1.063616 CAGCATGCACACTCATACAGC 59.936 52.381 21.98 0.00 0.00 4.40
2287 3591 2.262774 ATCAGGTACAGGCAGGCAGC 62.263 60.000 0.00 0.00 44.65 5.25
2288 3592 0.463295 CATCAGGTACAGGCAGGCAG 60.463 60.000 0.00 0.00 0.00 4.85
2289 3593 1.603842 CATCAGGTACAGGCAGGCA 59.396 57.895 0.00 0.00 0.00 4.75
2290 3594 1.153086 CCATCAGGTACAGGCAGGC 60.153 63.158 0.00 0.00 0.00 4.85
2291 3595 1.135094 ATCCATCAGGTACAGGCAGG 58.865 55.000 0.00 0.00 35.89 4.85
2292 3596 3.867600 GCATATCCATCAGGTACAGGCAG 60.868 52.174 0.00 0.00 35.89 4.85
2293 3597 2.038952 GCATATCCATCAGGTACAGGCA 59.961 50.000 0.00 0.00 35.89 4.75
2294 3598 2.616510 GGCATATCCATCAGGTACAGGC 60.617 54.545 0.00 0.00 35.89 4.85
2295 3599 2.354103 CGGCATATCCATCAGGTACAGG 60.354 54.545 0.00 0.00 35.89 4.00
2296 3600 2.300152 ACGGCATATCCATCAGGTACAG 59.700 50.000 0.00 0.00 35.89 2.74
2297 3601 2.325484 ACGGCATATCCATCAGGTACA 58.675 47.619 0.00 0.00 35.89 2.90
2298 3602 3.510360 ACTACGGCATATCCATCAGGTAC 59.490 47.826 0.00 0.00 35.89 3.34
2299 3603 3.774734 ACTACGGCATATCCATCAGGTA 58.225 45.455 0.00 0.00 35.89 3.08
2300 3604 2.609747 ACTACGGCATATCCATCAGGT 58.390 47.619 0.00 0.00 35.89 4.00
2301 3605 3.427638 CGTACTACGGCATATCCATCAGG 60.428 52.174 0.26 0.00 38.08 3.86
2302 3606 3.439129 TCGTACTACGGCATATCCATCAG 59.561 47.826 8.71 0.00 42.81 2.90
2303 3607 3.414269 TCGTACTACGGCATATCCATCA 58.586 45.455 8.71 0.00 42.81 3.07
2304 3608 3.439476 ACTCGTACTACGGCATATCCATC 59.561 47.826 8.71 0.00 42.81 3.51
2305 3609 3.418995 ACTCGTACTACGGCATATCCAT 58.581 45.455 8.71 0.00 42.81 3.41
2306 3610 2.854963 ACTCGTACTACGGCATATCCA 58.145 47.619 8.71 0.00 42.81 3.41
2307 3611 3.911661 AACTCGTACTACGGCATATCC 57.088 47.619 8.71 0.00 42.81 2.59
2308 3612 5.995055 AGTAAACTCGTACTACGGCATATC 58.005 41.667 8.71 0.00 42.81 1.63
2309 3613 7.388776 TCATAGTAAACTCGTACTACGGCATAT 59.611 37.037 8.71 0.00 42.81 1.78
2310 3614 6.705825 TCATAGTAAACTCGTACTACGGCATA 59.294 38.462 8.71 0.00 42.81 3.14
2311 3615 5.528690 TCATAGTAAACTCGTACTACGGCAT 59.471 40.000 8.71 0.00 42.81 4.40
2312 3616 4.875536 TCATAGTAAACTCGTACTACGGCA 59.124 41.667 8.71 0.00 42.81 5.69
2313 3617 5.007136 ACTCATAGTAAACTCGTACTACGGC 59.993 44.000 8.71 0.00 42.81 5.68
2314 3618 6.417327 CACTCATAGTAAACTCGTACTACGG 58.583 44.000 8.71 2.71 42.81 4.02
2315 3619 6.417327 CCACTCATAGTAAACTCGTACTACG 58.583 44.000 1.93 1.93 44.19 3.51
2316 3620 6.723282 CCCACTCATAGTAAACTCGTACTAC 58.277 44.000 0.00 0.00 38.95 2.73
2317 3621 5.297776 GCCCACTCATAGTAAACTCGTACTA 59.702 44.000 0.00 0.00 40.10 1.82
2318 3622 4.097589 GCCCACTCATAGTAAACTCGTACT 59.902 45.833 0.00 0.00 37.98 2.73
2319 3623 4.142315 TGCCCACTCATAGTAAACTCGTAC 60.142 45.833 0.00 0.00 0.00 3.67
2320 3624 4.018490 TGCCCACTCATAGTAAACTCGTA 58.982 43.478 0.00 0.00 0.00 3.43
2321 3625 2.829720 TGCCCACTCATAGTAAACTCGT 59.170 45.455 0.00 0.00 0.00 4.18
2322 3626 3.448686 CTGCCCACTCATAGTAAACTCG 58.551 50.000 0.00 0.00 0.00 4.18
2323 3627 3.432326 CCCTGCCCACTCATAGTAAACTC 60.432 52.174 0.00 0.00 0.00 3.01
2324 3628 2.505819 CCCTGCCCACTCATAGTAAACT 59.494 50.000 0.00 0.00 0.00 2.66
2325 3629 2.421529 CCCCTGCCCACTCATAGTAAAC 60.422 54.545 0.00 0.00 0.00 2.01
2326 3630 1.843851 CCCCTGCCCACTCATAGTAAA 59.156 52.381 0.00 0.00 0.00 2.01
2327 3631 1.507140 CCCCTGCCCACTCATAGTAA 58.493 55.000 0.00 0.00 0.00 2.24
2328 3632 0.399949 CCCCCTGCCCACTCATAGTA 60.400 60.000 0.00 0.00 0.00 1.82
2329 3633 1.694169 CCCCCTGCCCACTCATAGT 60.694 63.158 0.00 0.00 0.00 2.12
2330 3634 1.384502 TCCCCCTGCCCACTCATAG 60.385 63.158 0.00 0.00 0.00 2.23
2331 3635 1.384502 CTCCCCCTGCCCACTCATA 60.385 63.158 0.00 0.00 0.00 2.15
2332 3636 2.693864 CTCCCCCTGCCCACTCAT 60.694 66.667 0.00 0.00 0.00 2.90
2339 3643 4.741239 TCCTGACCTCCCCCTGCC 62.741 72.222 0.00 0.00 0.00 4.85
2340 3644 2.610859 TTCCTGACCTCCCCCTGC 60.611 66.667 0.00 0.00 0.00 4.85
2341 3645 1.997874 CCTTCCTGACCTCCCCCTG 60.998 68.421 0.00 0.00 0.00 4.45
2342 3646 2.184631 TCCTTCCTGACCTCCCCCT 61.185 63.158 0.00 0.00 0.00 4.79
2343 3647 1.996187 GTCCTTCCTGACCTCCCCC 60.996 68.421 0.00 0.00 0.00 5.40
2344 3648 1.081277 AGTCCTTCCTGACCTCCCC 59.919 63.158 0.00 0.00 35.83 4.81
2345 3649 1.904990 GCAGTCCTTCCTGACCTCCC 61.905 65.000 0.00 0.00 35.83 4.30
2346 3650 1.194781 TGCAGTCCTTCCTGACCTCC 61.195 60.000 0.00 0.00 35.83 4.30
2347 3651 0.248843 CTGCAGTCCTTCCTGACCTC 59.751 60.000 5.25 0.00 35.83 3.85
2348 3652 1.197430 CCTGCAGTCCTTCCTGACCT 61.197 60.000 13.81 0.00 35.83 3.85
2349 3653 1.298014 CCTGCAGTCCTTCCTGACC 59.702 63.158 13.81 0.00 35.83 4.02
2350 3654 0.398318 AACCTGCAGTCCTTCCTGAC 59.602 55.000 13.81 0.00 34.23 3.51
2351 3655 0.687354 GAACCTGCAGTCCTTCCTGA 59.313 55.000 13.81 0.00 34.23 3.86
2352 3656 0.671781 CGAACCTGCAGTCCTTCCTG 60.672 60.000 13.81 0.00 35.49 3.86
2353 3657 1.122019 ACGAACCTGCAGTCCTTCCT 61.122 55.000 13.81 0.00 0.00 3.36
2354 3658 0.670854 GACGAACCTGCAGTCCTTCC 60.671 60.000 13.81 0.00 0.00 3.46
2355 3659 0.033504 TGACGAACCTGCAGTCCTTC 59.966 55.000 13.81 9.17 34.24 3.46
2356 3660 0.468226 TTGACGAACCTGCAGTCCTT 59.532 50.000 13.81 0.24 34.24 3.36
2357 3661 0.249911 GTTGACGAACCTGCAGTCCT 60.250 55.000 13.81 0.00 34.24 3.85
2358 3662 0.531974 TGTTGACGAACCTGCAGTCC 60.532 55.000 13.81 0.00 34.24 3.85
2359 3663 0.582005 GTGTTGACGAACCTGCAGTC 59.418 55.000 13.81 4.43 35.61 3.51
2360 3664 0.814010 GGTGTTGACGAACCTGCAGT 60.814 55.000 13.81 0.00 33.40 4.40
2361 3665 0.813610 TGGTGTTGACGAACCTGCAG 60.814 55.000 6.78 6.78 37.36 4.41
2362 3666 0.393132 TTGGTGTTGACGAACCTGCA 60.393 50.000 0.00 0.00 37.36 4.41
2363 3667 0.307760 CTTGGTGTTGACGAACCTGC 59.692 55.000 0.00 0.00 37.36 4.85
2364 3668 1.663695 ACTTGGTGTTGACGAACCTG 58.336 50.000 0.00 0.00 37.36 4.00
2365 3669 3.133362 TCTTACTTGGTGTTGACGAACCT 59.867 43.478 0.00 0.00 37.36 3.50
2366 3670 3.460103 TCTTACTTGGTGTTGACGAACC 58.540 45.455 0.00 0.00 36.96 3.62
2367 3671 3.059800 GCTCTTACTTGGTGTTGACGAAC 60.060 47.826 0.00 0.00 0.00 3.95
2368 3672 3.128349 GCTCTTACTTGGTGTTGACGAA 58.872 45.455 0.00 0.00 0.00 3.85
2369 3673 2.364324 AGCTCTTACTTGGTGTTGACGA 59.636 45.455 0.00 0.00 0.00 4.20
2370 3674 2.476619 CAGCTCTTACTTGGTGTTGACG 59.523 50.000 0.00 0.00 0.00 4.35
2371 3675 3.728845 TCAGCTCTTACTTGGTGTTGAC 58.271 45.455 0.00 0.00 33.89 3.18
2372 3676 3.803715 GCTCAGCTCTTACTTGGTGTTGA 60.804 47.826 0.00 0.00 33.89 3.18
2373 3677 2.481952 GCTCAGCTCTTACTTGGTGTTG 59.518 50.000 0.00 0.00 33.89 3.33
2374 3678 2.370189 AGCTCAGCTCTTACTTGGTGTT 59.630 45.455 0.00 0.00 30.62 3.32
2375 3679 1.974236 AGCTCAGCTCTTACTTGGTGT 59.026 47.619 0.00 0.00 30.62 4.16
2376 3680 2.758736 AGCTCAGCTCTTACTTGGTG 57.241 50.000 0.00 0.00 30.62 4.17
2377 3681 3.835395 ACTAAGCTCAGCTCTTACTTGGT 59.165 43.478 0.00 0.00 38.25 3.67
2378 3682 4.081972 TGACTAAGCTCAGCTCTTACTTGG 60.082 45.833 0.00 0.00 38.25 3.61
2379 3683 5.065704 TGACTAAGCTCAGCTCTTACTTG 57.934 43.478 0.00 0.00 38.25 3.16
2380 3684 5.323371 CTGACTAAGCTCAGCTCTTACTT 57.677 43.478 0.00 0.00 38.25 2.24
2381 3685 4.981806 CTGACTAAGCTCAGCTCTTACT 57.018 45.455 0.00 0.00 38.25 2.24
2394 3698 1.805945 GGCCACGTCGCTGACTAAG 60.806 63.158 4.85 0.00 0.00 2.18
2395 3699 0.961857 TAGGCCACGTCGCTGACTAA 60.962 55.000 5.01 0.00 0.00 2.24
2396 3700 1.374343 CTAGGCCACGTCGCTGACTA 61.374 60.000 5.01 0.00 0.00 2.59
2397 3701 2.675423 TAGGCCACGTCGCTGACT 60.675 61.111 5.01 0.00 0.00 3.41
2398 3702 2.202623 CTAGGCCACGTCGCTGAC 60.203 66.667 5.01 0.00 0.00 3.51
2399 3703 2.675423 ACTAGGCCACGTCGCTGA 60.675 61.111 5.01 0.00 0.00 4.26
2400 3704 2.507102 CACTAGGCCACGTCGCTG 60.507 66.667 5.01 0.00 0.00 5.18
2401 3705 3.760035 CCACTAGGCCACGTCGCT 61.760 66.667 5.01 0.00 0.00 4.93
2411 3715 1.734707 CGGTTACGTCTTGCCACTAGG 60.735 57.143 0.00 0.00 34.69 3.02
2412 3716 1.625616 CGGTTACGTCTTGCCACTAG 58.374 55.000 0.00 0.00 34.81 2.57
2413 3717 3.798646 CGGTTACGTCTTGCCACTA 57.201 52.632 0.00 0.00 34.81 2.74
2414 3718 4.667420 CGGTTACGTCTTGCCACT 57.333 55.556 0.00 0.00 34.81 4.00
2425 3729 3.332409 ACGCACACGCACGGTTAC 61.332 61.111 0.00 0.00 45.53 2.50
2426 3730 3.331630 CACGCACACGCACGGTTA 61.332 61.111 0.00 0.00 45.53 2.85
2439 3743 0.179192 CCACATACACATGCACACGC 60.179 55.000 0.00 0.00 35.39 5.34
2440 3744 1.128507 GACCACATACACATGCACACG 59.871 52.381 0.00 0.00 35.39 4.49
2441 3745 1.128507 CGACCACATACACATGCACAC 59.871 52.381 0.00 0.00 35.39 3.82
2442 3746 1.270571 ACGACCACATACACATGCACA 60.271 47.619 0.00 0.00 35.39 4.57
2443 3747 1.128507 CACGACCACATACACATGCAC 59.871 52.381 0.00 0.00 35.39 4.57
2444 3748 1.437625 CACGACCACATACACATGCA 58.562 50.000 0.00 0.00 35.39 3.96
2445 3749 0.726827 CCACGACCACATACACATGC 59.273 55.000 0.00 0.00 35.39 4.06
2446 3750 0.726827 GCCACGACCACATACACATG 59.273 55.000 0.00 0.00 38.21 3.21
2447 3751 0.323302 TGCCACGACCACATACACAT 59.677 50.000 0.00 0.00 0.00 3.21
2448 3752 0.323302 ATGCCACGACCACATACACA 59.677 50.000 0.00 0.00 0.00 3.72
2449 3753 0.726827 CATGCCACGACCACATACAC 59.273 55.000 0.00 0.00 0.00 2.90
2450 3754 0.392327 CCATGCCACGACCACATACA 60.392 55.000 0.00 0.00 0.00 2.29
2451 3755 1.095228 CCCATGCCACGACCACATAC 61.095 60.000 0.00 0.00 0.00 2.39
2452 3756 1.223211 CCCATGCCACGACCACATA 59.777 57.895 0.00 0.00 0.00 2.29
2453 3757 2.045045 CCCATGCCACGACCACAT 60.045 61.111 0.00 0.00 0.00 3.21
2454 3758 4.343323 CCCCATGCCACGACCACA 62.343 66.667 0.00 0.00 0.00 4.17
2457 3761 2.902423 TATTGCCCCATGCCACGACC 62.902 60.000 0.00 0.00 40.16 4.79
2458 3762 1.034838 TTATTGCCCCATGCCACGAC 61.035 55.000 0.00 0.00 40.16 4.34
2459 3763 0.106268 ATTATTGCCCCATGCCACGA 60.106 50.000 0.00 0.00 40.16 4.35
2460 3764 1.614996 TATTATTGCCCCATGCCACG 58.385 50.000 0.00 0.00 40.16 4.94
2461 3765 4.040217 TGAATTATTATTGCCCCATGCCAC 59.960 41.667 0.00 0.00 40.16 5.01
2462 3766 4.229639 TGAATTATTATTGCCCCATGCCA 58.770 39.130 0.00 0.00 40.16 4.92
2463 3767 4.527816 TCTGAATTATTATTGCCCCATGCC 59.472 41.667 0.00 0.00 40.16 4.40
2464 3768 5.337009 CCTCTGAATTATTATTGCCCCATGC 60.337 44.000 0.00 0.00 41.77 4.06
2465 3769 6.012113 TCCTCTGAATTATTATTGCCCCATG 58.988 40.000 0.00 0.00 0.00 3.66
2466 3770 6.218195 TCCTCTGAATTATTATTGCCCCAT 57.782 37.500 0.00 0.00 0.00 4.00
2467 3771 5.661503 TCCTCTGAATTATTATTGCCCCA 57.338 39.130 0.00 0.00 0.00 4.96
2468 3772 6.015940 CACTTCCTCTGAATTATTATTGCCCC 60.016 42.308 0.00 0.00 0.00 5.80
2469 3773 6.772716 TCACTTCCTCTGAATTATTATTGCCC 59.227 38.462 0.00 0.00 0.00 5.36
2470 3774 7.807977 TCACTTCCTCTGAATTATTATTGCC 57.192 36.000 0.00 0.00 0.00 4.52
2471 3775 9.060347 TCATCACTTCCTCTGAATTATTATTGC 57.940 33.333 0.00 0.00 0.00 3.56
2474 3778 9.790344 CCTTCATCACTTCCTCTGAATTATTAT 57.210 33.333 0.00 0.00 0.00 1.28
2475 3779 8.213679 CCCTTCATCACTTCCTCTGAATTATTA 58.786 37.037 0.00 0.00 0.00 0.98
2526 3839 4.236416 AAGCACGCACACGCACAC 62.236 61.111 0.00 0.00 45.53 3.82
2527 3840 4.235025 CAAGCACGCACACGCACA 62.235 61.111 0.00 0.00 45.53 4.57
2528 3841 4.962122 CCAAGCACGCACACGCAC 62.962 66.667 0.00 0.00 45.53 5.34
2623 3949 0.595053 CGAGACGTCAGTGTTGCAGT 60.595 55.000 19.50 0.00 0.00 4.40
2636 3962 2.030946 GGCAGAATTCCATTTCGAGACG 59.969 50.000 0.65 0.00 0.00 4.18
2637 3963 2.030946 CGGCAGAATTCCATTTCGAGAC 59.969 50.000 0.65 0.00 0.00 3.36
2713 4051 1.823041 GGCCTTGCTGGAGATGCTC 60.823 63.158 0.00 0.00 38.35 4.26
2714 4052 2.274760 GGCCTTGCTGGAGATGCT 59.725 61.111 0.00 0.00 38.35 3.79
2715 4053 3.207669 CGGCCTTGCTGGAGATGC 61.208 66.667 0.00 0.00 38.35 3.91
2716 4054 3.207669 GCGGCCTTGCTGGAGATG 61.208 66.667 0.00 0.00 38.35 2.90
2717 4055 4.496336 GGCGGCCTTGCTGGAGAT 62.496 66.667 12.87 0.00 38.35 2.75
2813 4153 5.614013 GCACAAGTTTCTACGTAATTTCGCT 60.614 40.000 4.22 0.00 0.00 4.93
2855 4195 4.389382 TCAATAAAATTTCGCCGAGTTCGA 59.611 37.500 2.59 0.00 43.02 3.71
2920 4287 2.062177 GGCCGGGAAGTAGTGGCTA 61.062 63.158 2.18 0.00 46.72 3.93
2936 4308 1.521681 GTAGATGACGGGCAGTGGC 60.522 63.158 8.47 8.47 40.13 5.01
3091 4478 1.037579 TGACGATGAGGACGAGGCAT 61.038 55.000 0.00 0.00 34.70 4.40
3092 4479 1.677633 TGACGATGAGGACGAGGCA 60.678 57.895 0.00 0.00 34.70 4.75
3148 4540 2.683933 AACTCCAGGACCGGCGAT 60.684 61.111 9.30 0.00 0.00 4.58
3156 4560 2.693762 CGTACGCGGAACTCCAGGA 61.694 63.158 12.47 0.00 35.14 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.