Multiple sequence alignment - TraesCS2B01G098400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G098400 chr2B 100.000 3754 0 0 1 3754 58313125 58309372 0.000000e+00 6933.0
1 TraesCS2B01G098400 chr2B 89.091 1705 105 36 1049 2699 58344262 58345939 0.000000e+00 2043.0
2 TraesCS2B01G098400 chr2B 86.044 1992 135 58 748 2650 58092541 58090604 0.000000e+00 2006.0
3 TraesCS2B01G098400 chr2B 90.255 1488 89 25 1062 2540 58536337 58537777 0.000000e+00 1893.0
4 TraesCS2B01G098400 chr2B 95.397 956 41 1 1591 2546 58237226 58236274 0.000000e+00 1519.0
5 TraesCS2B01G098400 chr2B 77.024 1223 141 71 315 1478 58239562 58238421 1.170000e-159 573.0
6 TraesCS2B01G098400 chr2B 81.536 547 54 20 317 844 58326619 58327137 1.260000e-109 407.0
7 TraesCS2B01G098400 chr2B 80.254 552 61 25 314 846 58532102 58532624 4.580000e-99 372.0
8 TraesCS2B01G098400 chr2B 99.474 190 1 0 3565 3754 659686944 659687133 2.780000e-91 346.0
9 TraesCS2B01G098400 chr2B 99.474 190 1 0 3565 3754 758126935 758127124 2.780000e-91 346.0
10 TraesCS2B01G098400 chr2B 82.217 433 38 16 315 742 58094665 58094267 1.670000e-88 337.0
11 TraesCS2B01G098400 chr2B 78.909 550 62 23 317 849 58290779 58290267 1.300000e-84 324.0
12 TraesCS2B01G098400 chr2B 81.471 367 29 11 315 677 58334202 58334533 8.000000e-67 265.0
13 TraesCS2B01G098400 chr2B 83.529 255 23 10 1560 1809 57787774 57788014 1.760000e-53 220.0
14 TraesCS2B01G098400 chr2B 78.146 302 18 24 2440 2697 58537899 58538196 8.400000e-32 148.0
15 TraesCS2B01G098400 chr2B 88.235 102 4 5 749 843 58334574 58334674 8.520000e-22 115.0
16 TraesCS2B01G098400 chr2B 100.000 51 0 0 154 204 58312812 58312762 1.110000e-15 95.3
17 TraesCS2B01G098400 chr2B 93.651 63 3 1 2705 2767 669658316 669658377 3.990000e-15 93.5
18 TraesCS2B01G098400 chr2A 86.466 2453 169 51 315 2668 38517484 38515096 0.000000e+00 2540.0
19 TraesCS2B01G098400 chr2A 85.193 2276 164 62 544 2695 38569105 38571331 0.000000e+00 2176.0
20 TraesCS2B01G098400 chr2A 80.762 551 62 20 317 852 38529724 38529203 1.260000e-104 390.0
21 TraesCS2B01G098400 chr2A 92.946 241 16 1 2246 2485 38398170 38397930 2.150000e-92 350.0
22 TraesCS2B01G098400 chr2A 88.293 205 18 4 317 521 38545198 38545396 1.350000e-59 241.0
23 TraesCS2B01G098400 chr2A 84.579 214 22 4 1 204 38545033 38545245 6.360000e-48 202.0
24 TraesCS2B01G098400 chr2D 89.414 1757 104 38 863 2546 35242744 35240997 0.000000e+00 2139.0
25 TraesCS2B01G098400 chr2D 90.273 1501 88 28 1217 2668 35314916 35316407 0.000000e+00 1910.0
26 TraesCS2B01G098400 chr2D 90.129 851 80 4 2717 3565 43419237 43420085 0.000000e+00 1103.0
27 TraesCS2B01G098400 chr2D 87.465 359 23 8 857 1198 35314455 35314808 9.770000e-106 394.0
28 TraesCS2B01G098400 chr2D 80.583 515 40 24 314 811 35313974 35314445 3.590000e-90 342.0
29 TraesCS2B01G098400 chr2D 84.589 292 21 14 354 643 35243381 35243112 6.180000e-68 268.0
30 TraesCS2B01G098400 chr2D 87.273 165 20 1 1 164 35243573 35243409 1.780000e-43 187.0
31 TraesCS2B01G098400 chr2D 82.313 147 17 6 60 204 35313885 35314024 6.590000e-23 119.0
32 TraesCS2B01G098400 chr5B 96.042 859 34 0 2707 3565 41939559 41938701 0.000000e+00 1399.0
33 TraesCS2B01G098400 chr5B 99.471 189 1 0 3566 3754 27888273 27888085 9.980000e-91 344.0
34 TraesCS2B01G098400 chr5B 99.471 189 1 0 3566 3754 267391705 267391893 9.980000e-91 344.0
35 TraesCS2B01G098400 chr5B 97.321 112 3 0 203 314 56550407 56550518 1.380000e-44 191.0
36 TraesCS2B01G098400 chr6D 94.767 860 44 1 2706 3565 387391685 387390827 0.000000e+00 1338.0
37 TraesCS2B01G098400 chr6D 97.778 45 1 0 2708 2752 10442807 10442763 1.120000e-10 78.7
38 TraesCS2B01G098400 chr7B 92.956 866 58 3 2703 3565 552779593 552780458 0.000000e+00 1258.0
39 TraesCS2B01G098400 chr1D 93.087 839 57 1 2709 3547 29579984 29579147 0.000000e+00 1227.0
40 TraesCS2B01G098400 chr6B 98.964 193 2 0 3562 3754 295355330 295355138 2.780000e-91 346.0
41 TraesCS2B01G098400 chr6B 99.474 190 1 0 3565 3754 577589852 577590041 2.780000e-91 346.0
42 TraesCS2B01G098400 chr3B 99.476 191 0 1 3565 3754 40861456 40861266 2.780000e-91 346.0
43 TraesCS2B01G098400 chr3B 97.273 110 3 0 203 312 20734203 20734312 1.780000e-43 187.0
44 TraesCS2B01G098400 chr4B 99.471 189 1 0 3566 3754 171921009 171921197 9.980000e-91 344.0
45 TraesCS2B01G098400 chr4B 99.471 189 1 0 3566 3754 240254207 240254019 9.980000e-91 344.0
46 TraesCS2B01G098400 chr5A 84.478 335 51 1 2704 3038 253605109 253604776 2.800000e-86 329.0
47 TraesCS2B01G098400 chr5D 91.964 112 6 2 203 311 537330816 537330927 1.810000e-33 154.0
48 TraesCS2B01G098400 chr5D 83.333 108 12 4 209 312 495797373 495797268 1.110000e-15 95.3
49 TraesCS2B01G098400 chr7A 86.364 110 11 2 203 309 74732045 74732153 2.370000e-22 117.0
50 TraesCS2B01G098400 chr7D 87.629 97 9 2 203 296 261878640 261878544 3.960000e-20 110.0
51 TraesCS2B01G098400 chr4D 85.185 108 13 3 3239 3346 208378854 208378958 1.430000e-19 108.0
52 TraesCS2B01G098400 chr4D 87.302 63 6 2 1816 1877 300858236 300858175 1.870000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G098400 chr2B 58309372 58313125 3753 True 3514.150000 6933 100.0000 1 3754 2 chr2B.!!$R4 3753
1 TraesCS2B01G098400 chr2B 58344262 58345939 1677 False 2043.000000 2043 89.0910 1049 2699 1 chr2B.!!$F3 1650
2 TraesCS2B01G098400 chr2B 58090604 58094665 4061 True 1171.500000 2006 84.1305 315 2650 2 chr2B.!!$R2 2335
3 TraesCS2B01G098400 chr2B 58236274 58239562 3288 True 1046.000000 1519 86.2105 315 2546 2 chr2B.!!$R3 2231
4 TraesCS2B01G098400 chr2B 58532102 58538196 6094 False 804.333333 1893 82.8850 314 2697 3 chr2B.!!$F8 2383
5 TraesCS2B01G098400 chr2B 58326619 58327137 518 False 407.000000 407 81.5360 317 844 1 chr2B.!!$F2 527
6 TraesCS2B01G098400 chr2B 58290267 58290779 512 True 324.000000 324 78.9090 317 849 1 chr2B.!!$R1 532
7 TraesCS2B01G098400 chr2A 38515096 38517484 2388 True 2540.000000 2540 86.4660 315 2668 1 chr2A.!!$R2 2353
8 TraesCS2B01G098400 chr2A 38569105 38571331 2226 False 2176.000000 2176 85.1930 544 2695 1 chr2A.!!$F1 2151
9 TraesCS2B01G098400 chr2A 38529203 38529724 521 True 390.000000 390 80.7620 317 852 1 chr2A.!!$R3 535
10 TraesCS2B01G098400 chr2D 43419237 43420085 848 False 1103.000000 1103 90.1290 2717 3565 1 chr2D.!!$F1 848
11 TraesCS2B01G098400 chr2D 35240997 35243573 2576 True 864.666667 2139 87.0920 1 2546 3 chr2D.!!$R1 2545
12 TraesCS2B01G098400 chr2D 35313885 35316407 2522 False 691.250000 1910 85.1585 60 2668 4 chr2D.!!$F2 2608
13 TraesCS2B01G098400 chr5B 41938701 41939559 858 True 1399.000000 1399 96.0420 2707 3565 1 chr5B.!!$R2 858
14 TraesCS2B01G098400 chr6D 387390827 387391685 858 True 1338.000000 1338 94.7670 2706 3565 1 chr6D.!!$R2 859
15 TraesCS2B01G098400 chr7B 552779593 552780458 865 False 1258.000000 1258 92.9560 2703 3565 1 chr7B.!!$F1 862
16 TraesCS2B01G098400 chr1D 29579147 29579984 837 True 1227.000000 1227 93.0870 2709 3547 1 chr1D.!!$R1 838

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 154 0.107017 ACGAGGCCCAAGAATCATGG 60.107 55.0 0.00 0.0 37.71 3.66 F
1184 6578 0.037326 TCAGCCAGGAAGTAACTGCG 60.037 55.0 0.00 0.0 34.65 5.18 F
1652 8299 0.039180 TGAGGAGCCTGTACGAGGAA 59.961 55.0 13.57 0.0 46.33 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1211 6605 0.256752 CACCATTGGAGATGGCCTCA 59.743 55.0 10.37 0.0 43.76 3.86 R
2628 9548 0.605860 CATCAGCATAGCAGGGAGGC 60.606 60.0 0.00 0.0 0.00 4.70 R
3637 10565 0.033504 TCACTCCCTTGACTCGTTGC 59.966 55.0 0.00 0.0 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 7.433708 TGTATACACAGTGACCATTTGAAAG 57.566 36.000 7.81 0.00 0.00 2.62
121 122 1.608590 ACAGTGACCATTTGAAAGCGG 59.391 47.619 0.00 0.00 0.00 5.52
124 125 1.067635 GTGACCATTTGAAAGCGGCAT 60.068 47.619 1.45 0.00 0.00 4.40
146 148 2.433436 GTGTAAACGAGGCCCAAGAAT 58.567 47.619 0.00 0.00 0.00 2.40
149 151 2.514458 AAACGAGGCCCAAGAATCAT 57.486 45.000 0.00 0.00 0.00 2.45
151 154 0.107017 ACGAGGCCCAAGAATCATGG 60.107 55.000 0.00 0.00 37.71 3.66
192 195 5.335897 GCACCTGCAGATATTTTGACTGAAA 60.336 40.000 17.39 0.00 41.59 2.69
193 196 6.626623 GCACCTGCAGATATTTTGACTGAAAT 60.627 38.462 17.39 0.00 41.59 2.17
194 197 7.415541 GCACCTGCAGATATTTTGACTGAAATA 60.416 37.037 17.39 0.00 41.59 1.40
195 198 8.127327 CACCTGCAGATATTTTGACTGAAATAG 58.873 37.037 17.39 0.00 35.58 1.73
196 199 7.137426 CCTGCAGATATTTTGACTGAAATAGC 58.863 38.462 17.39 0.00 37.87 2.97
197 200 6.718388 TGCAGATATTTTGACTGAAATAGCG 58.282 36.000 0.00 0.00 40.79 4.26
198 201 6.316140 TGCAGATATTTTGACTGAAATAGCGT 59.684 34.615 0.00 0.00 40.79 5.07
199 202 7.494298 TGCAGATATTTTGACTGAAATAGCGTA 59.506 33.333 0.00 0.00 40.79 4.42
200 203 8.335356 GCAGATATTTTGACTGAAATAGCGTAA 58.665 33.333 0.00 0.00 40.79 3.18
201 204 9.855361 CAGATATTTTGACTGAAATAGCGTAAG 57.145 33.333 0.00 0.00 40.79 2.34
202 205 9.046296 AGATATTTTGACTGAAATAGCGTAAGG 57.954 33.333 0.00 0.00 40.79 2.69
235 238 8.826765 AGATATAGGTAGACATATTTGGTTGGG 58.173 37.037 0.00 0.00 0.00 4.12
236 239 3.898482 AGGTAGACATATTTGGTTGGGC 58.102 45.455 0.00 0.00 0.00 5.36
237 240 3.527665 AGGTAGACATATTTGGTTGGGCT 59.472 43.478 0.00 0.00 0.00 5.19
238 241 4.017499 AGGTAGACATATTTGGTTGGGCTT 60.017 41.667 0.00 0.00 0.00 4.35
239 242 4.097892 GGTAGACATATTTGGTTGGGCTTG 59.902 45.833 0.00 0.00 0.00 4.01
240 243 2.497273 AGACATATTTGGTTGGGCTTGC 59.503 45.455 0.00 0.00 0.00 4.01
241 244 1.554617 ACATATTTGGTTGGGCTTGCC 59.445 47.619 2.49 2.49 0.00 4.52
242 245 1.832998 CATATTTGGTTGGGCTTGCCT 59.167 47.619 11.71 0.00 0.00 4.75
243 246 1.555967 TATTTGGTTGGGCTTGCCTC 58.444 50.000 11.71 2.66 0.00 4.70
244 247 0.471591 ATTTGGTTGGGCTTGCCTCA 60.472 50.000 11.71 5.27 0.00 3.86
245 248 0.471591 TTTGGTTGGGCTTGCCTCAT 60.472 50.000 11.71 0.00 0.00 2.90
246 249 1.186917 TTGGTTGGGCTTGCCTCATG 61.187 55.000 11.71 0.00 0.00 3.07
247 250 1.304381 GGTTGGGCTTGCCTCATGA 60.304 57.895 11.71 0.00 0.00 3.07
248 251 1.598701 GGTTGGGCTTGCCTCATGAC 61.599 60.000 11.71 4.50 0.00 3.06
249 252 1.304381 TTGGGCTTGCCTCATGACC 60.304 57.895 11.71 0.00 37.23 4.02
250 253 2.440980 GGGCTTGCCTCATGACCC 60.441 66.667 11.71 1.33 31.35 4.46
251 254 2.356278 GGCTTGCCTCATGACCCA 59.644 61.111 4.11 0.00 0.00 4.51
252 255 1.304381 GGCTTGCCTCATGACCCAA 60.304 57.895 4.11 0.00 0.00 4.12
253 256 1.598701 GGCTTGCCTCATGACCCAAC 61.599 60.000 4.11 0.00 0.00 3.77
254 257 0.610232 GCTTGCCTCATGACCCAACT 60.610 55.000 0.00 0.00 0.00 3.16
255 258 1.457346 CTTGCCTCATGACCCAACTC 58.543 55.000 0.00 0.00 0.00 3.01
256 259 0.770499 TTGCCTCATGACCCAACTCA 59.230 50.000 0.00 0.00 0.00 3.41
257 260 0.994247 TGCCTCATGACCCAACTCAT 59.006 50.000 0.00 0.00 0.00 2.90
258 261 1.340308 TGCCTCATGACCCAACTCATG 60.340 52.381 0.00 3.22 46.22 3.07
259 262 1.340405 GCCTCATGACCCAACTCATGT 60.340 52.381 8.61 0.00 45.41 3.21
260 263 2.092968 GCCTCATGACCCAACTCATGTA 60.093 50.000 8.61 0.00 45.41 2.29
261 264 3.434167 GCCTCATGACCCAACTCATGTAT 60.434 47.826 8.61 0.00 45.41 2.29
262 265 4.384056 CCTCATGACCCAACTCATGTATC 58.616 47.826 8.61 0.00 45.41 2.24
263 266 4.102210 CCTCATGACCCAACTCATGTATCT 59.898 45.833 8.61 0.00 45.41 1.98
264 267 5.305386 CCTCATGACCCAACTCATGTATCTA 59.695 44.000 8.61 0.00 45.41 1.98
265 268 6.013898 CCTCATGACCCAACTCATGTATCTAT 60.014 42.308 8.61 0.00 45.41 1.98
266 269 6.762333 TCATGACCCAACTCATGTATCTATG 58.238 40.000 8.61 0.00 45.41 2.23
267 270 6.554605 TCATGACCCAACTCATGTATCTATGA 59.445 38.462 8.61 0.00 45.41 2.15
268 271 6.806668 TGACCCAACTCATGTATCTATGAA 57.193 37.500 0.00 0.00 36.69 2.57
269 272 6.582636 TGACCCAACTCATGTATCTATGAAC 58.417 40.000 0.00 0.00 36.69 3.18
270 273 6.156083 TGACCCAACTCATGTATCTATGAACA 59.844 38.462 0.00 0.00 36.69 3.18
271 274 6.957631 ACCCAACTCATGTATCTATGAACAA 58.042 36.000 0.00 0.00 36.69 2.83
272 275 7.577303 ACCCAACTCATGTATCTATGAACAAT 58.423 34.615 0.00 0.00 36.69 2.71
273 276 8.713971 ACCCAACTCATGTATCTATGAACAATA 58.286 33.333 0.00 0.00 36.69 1.90
274 277 9.730705 CCCAACTCATGTATCTATGAACAATAT 57.269 33.333 0.00 0.00 36.69 1.28
290 293 7.757526 TGAACAATATCAACCAATAAAGTCGG 58.242 34.615 0.00 0.00 0.00 4.79
291 294 6.693315 ACAATATCAACCAATAAAGTCGGG 57.307 37.500 0.00 0.00 0.00 5.14
292 295 5.067283 ACAATATCAACCAATAAAGTCGGGC 59.933 40.000 0.00 0.00 0.00 6.13
293 296 1.444836 TCAACCAATAAAGTCGGGCG 58.555 50.000 0.00 0.00 0.00 6.13
294 297 1.002201 TCAACCAATAAAGTCGGGCGA 59.998 47.619 0.00 0.00 0.00 5.54
295 298 1.396996 CAACCAATAAAGTCGGGCGAG 59.603 52.381 0.00 0.00 0.00 5.03
296 299 0.899720 ACCAATAAAGTCGGGCGAGA 59.100 50.000 0.00 0.00 0.00 4.04
297 300 1.485066 ACCAATAAAGTCGGGCGAGAT 59.515 47.619 0.00 0.00 0.00 2.75
298 301 2.093128 ACCAATAAAGTCGGGCGAGATT 60.093 45.455 0.00 0.00 0.00 2.40
299 302 2.943033 CCAATAAAGTCGGGCGAGATTT 59.057 45.455 0.00 0.00 0.00 2.17
300 303 3.002348 CCAATAAAGTCGGGCGAGATTTC 59.998 47.826 0.00 0.00 0.00 2.17
301 304 3.821421 ATAAAGTCGGGCGAGATTTCT 57.179 42.857 0.00 0.00 0.00 2.52
302 305 2.011540 AAAGTCGGGCGAGATTTCTC 57.988 50.000 0.00 0.00 39.55 2.87
303 306 0.895530 AAGTCGGGCGAGATTTCTCA 59.104 50.000 8.23 0.00 43.00 3.27
304 307 0.895530 AGTCGGGCGAGATTTCTCAA 59.104 50.000 8.23 0.00 43.00 3.02
305 308 1.275291 AGTCGGGCGAGATTTCTCAAA 59.725 47.619 8.23 0.00 43.00 2.69
306 309 2.073816 GTCGGGCGAGATTTCTCAAAA 58.926 47.619 8.23 0.00 43.00 2.44
307 310 2.482721 GTCGGGCGAGATTTCTCAAAAA 59.517 45.455 8.23 0.00 43.00 1.94
356 2650 7.137426 CCTGCAGATATTTTGACTGAAATAGC 58.863 38.462 17.39 0.00 37.87 2.97
385 2680 5.219633 GTGGTGGTGCAAATAAAACACTAG 58.780 41.667 0.00 0.00 34.70 2.57
386 2681 4.234574 GGTGGTGCAAATAAAACACTAGC 58.765 43.478 0.00 0.00 36.41 3.42
387 2682 4.261825 GGTGGTGCAAATAAAACACTAGCA 60.262 41.667 0.00 0.00 41.26 3.49
442 2750 3.058224 GCCATGCATAATAAGAACGGTCC 60.058 47.826 0.00 0.00 0.00 4.46
443 2751 3.502211 CCATGCATAATAAGAACGGTCCC 59.498 47.826 0.00 0.00 0.00 4.46
444 2752 3.916359 TGCATAATAAGAACGGTCCCA 57.084 42.857 0.00 0.00 0.00 4.37
445 2753 4.223556 TGCATAATAAGAACGGTCCCAA 57.776 40.909 0.00 0.00 0.00 4.12
446 2754 4.787551 TGCATAATAAGAACGGTCCCAAT 58.212 39.130 0.00 0.00 0.00 3.16
447 2755 5.931294 TGCATAATAAGAACGGTCCCAATA 58.069 37.500 0.00 0.00 0.00 1.90
448 2756 5.761234 TGCATAATAAGAACGGTCCCAATAC 59.239 40.000 0.00 0.00 0.00 1.89
449 2757 5.180680 GCATAATAAGAACGGTCCCAATACC 59.819 44.000 0.00 0.00 36.08 2.73
450 2758 3.851458 ATAAGAACGGTCCCAATACCC 57.149 47.619 0.00 0.00 36.03 3.69
451 2759 0.622136 AAGAACGGTCCCAATACCCC 59.378 55.000 0.00 0.00 36.03 4.95
452 2760 0.253020 AGAACGGTCCCAATACCCCT 60.253 55.000 0.00 0.00 36.03 4.79
453 2761 0.179702 GAACGGTCCCAATACCCCTC 59.820 60.000 0.00 0.00 36.03 4.30
454 2762 0.548197 AACGGTCCCAATACCCCTCA 60.548 55.000 0.00 0.00 36.03 3.86
610 2934 9.754382 ATTATTTGCGATATTTTTCAGCATTCT 57.246 25.926 0.00 0.00 37.68 2.40
612 2936 5.816449 TGCGATATTTTTCAGCATTCTCA 57.184 34.783 0.00 0.00 32.43 3.27
613 2937 6.381481 TGCGATATTTTTCAGCATTCTCAT 57.619 33.333 0.00 0.00 32.43 2.90
614 2938 7.495135 TGCGATATTTTTCAGCATTCTCATA 57.505 32.000 0.00 0.00 32.43 2.15
615 2939 7.355017 TGCGATATTTTTCAGCATTCTCATAC 58.645 34.615 0.00 0.00 32.43 2.39
616 2940 7.227314 TGCGATATTTTTCAGCATTCTCATACT 59.773 33.333 0.00 0.00 32.43 2.12
617 2941 7.743838 GCGATATTTTTCAGCATTCTCATACTC 59.256 37.037 0.00 0.00 0.00 2.59
618 2942 8.986847 CGATATTTTTCAGCATTCTCATACTCT 58.013 33.333 0.00 0.00 0.00 3.24
664 2988 2.677836 GCGATAATGGTTCAAGCACTGA 59.322 45.455 0.00 0.00 0.00 3.41
701 3029 1.283793 CACCTGGAAACTTGCAGCG 59.716 57.895 0.00 2.55 44.18 5.18
735 3065 0.889994 GACCAATGCATTGCTGTCCA 59.110 50.000 30.15 0.00 36.48 4.02
742 3072 2.309613 TGCATTGCTGTCCAAGTTTCT 58.690 42.857 10.49 0.00 36.76 2.52
746 4796 4.543692 CATTGCTGTCCAAGTTTCTTCAG 58.456 43.478 0.00 0.00 36.76 3.02
767 4822 2.578495 GCAACGCTGAAACAGAAGATG 58.422 47.619 2.81 2.72 32.44 2.90
818 4929 0.899720 CTTGTTCCGGGTAGCCAGTA 59.100 55.000 12.31 0.00 0.00 2.74
820 4936 0.542467 TGTTCCGGGTAGCCAGTACA 60.542 55.000 12.31 7.16 32.62 2.90
860 4976 5.122239 TGGATCTCTGTTGCGAAGTTTATTG 59.878 40.000 0.00 0.00 0.00 1.90
988 6340 7.303182 TCTCTTGACTGAAAATGGAGTAAGA 57.697 36.000 0.00 0.00 0.00 2.10
1031 6405 2.504519 GGTGGTAGGGACGGCATC 59.495 66.667 0.00 0.00 0.00 3.91
1047 6421 1.302511 ATCGAACTGGCCGCTGTTT 60.303 52.632 9.44 0.00 0.00 2.83
1153 6547 1.414919 ACGACTGCACTTCCAACCTTA 59.585 47.619 0.00 0.00 0.00 2.69
1154 6548 2.158871 ACGACTGCACTTCCAACCTTAA 60.159 45.455 0.00 0.00 0.00 1.85
1184 6578 0.037326 TCAGCCAGGAAGTAACTGCG 60.037 55.000 0.00 0.00 34.65 5.18
1200 6594 2.086869 CTGCGTTTTCATGGATGGAGT 58.913 47.619 0.00 0.00 0.00 3.85
1203 6597 3.270877 GCGTTTTCATGGATGGAGTACT 58.729 45.455 0.00 0.00 0.00 2.73
1204 6598 3.689649 GCGTTTTCATGGATGGAGTACTT 59.310 43.478 0.00 0.00 0.00 2.24
1205 6599 4.437390 GCGTTTTCATGGATGGAGTACTTG 60.437 45.833 0.00 0.00 0.00 3.16
1207 6601 5.411361 CGTTTTCATGGATGGAGTACTTGAA 59.589 40.000 0.00 0.00 34.10 2.69
1208 6602 6.072728 CGTTTTCATGGATGGAGTACTTGAAA 60.073 38.462 10.97 10.97 40.88 2.69
1210 6604 5.762179 TCATGGATGGAGTACTTGAAACT 57.238 39.130 0.00 0.00 0.00 2.66
1211 6605 6.126863 TCATGGATGGAGTACTTGAAACTT 57.873 37.500 0.00 0.00 0.00 2.66
1212 6606 5.939883 TCATGGATGGAGTACTTGAAACTTG 59.060 40.000 0.00 0.00 0.00 3.16
1213 6607 5.560722 TGGATGGAGTACTTGAAACTTGA 57.439 39.130 0.00 0.00 0.00 3.02
1254 6748 3.941483 CACTTTCAGTCAACCACTCACTT 59.059 43.478 0.00 0.00 30.26 3.16
1256 6750 5.760253 CACTTTCAGTCAACCACTCACTTAT 59.240 40.000 0.00 0.00 30.26 1.73
1257 6751 5.760253 ACTTTCAGTCAACCACTCACTTATG 59.240 40.000 0.00 0.00 30.26 1.90
1311 6832 9.393249 GCTATAAGAACGATATGATATGAGAGC 57.607 37.037 0.00 0.00 0.00 4.09
1335 6878 3.429410 GGTTGAGCACCTTGGATATTTGC 60.429 47.826 0.00 0.00 43.29 3.68
1343 6886 3.447918 CTTGGATATTTGCAAGGCAGG 57.552 47.619 9.12 0.00 44.87 4.85
1447 6997 6.439636 AAGCTACCATCTGCATATTTCCTA 57.560 37.500 0.00 0.00 0.00 2.94
1552 7129 1.451927 CAGGGAATGCTGCCGCTAA 60.452 57.895 0.70 0.00 38.32 3.09
1555 7132 1.656441 GGAATGCTGCCGCTAATGG 59.344 57.895 0.70 0.00 36.97 3.16
1597 8244 3.117813 AGGCTGAACTACTACTCCGAGAT 60.118 47.826 1.33 0.00 0.00 2.75
1652 8299 0.039180 TGAGGAGCCTGTACGAGGAA 59.961 55.000 13.57 0.00 46.33 3.36
2117 8764 2.837291 TGCAACAACCTGGTGGCC 60.837 61.111 0.00 0.00 36.88 5.36
2504 9155 1.958288 AAGGGCTAGTGATCAGTGGT 58.042 50.000 13.54 0.00 0.00 4.16
2542 9422 3.061205 CGTGATCGTGTGTGTATGTATGC 60.061 47.826 0.00 0.00 0.00 3.14
2586 9496 1.321474 GGGCCATGTATCATGTGTGG 58.679 55.000 4.39 0.00 0.00 4.17
2628 9548 4.744136 CTGTATGAGCATGCATACCTTG 57.256 45.455 21.98 8.92 46.32 3.61
2676 9601 4.530388 CGTTATCCGAATTCGCTGTAGTA 58.470 43.478 22.36 5.38 39.56 1.82
2688 9613 2.852413 CGCTGTAGTATTCAACGTCTGG 59.148 50.000 0.00 0.00 0.00 3.86
2699 9624 3.601435 TCAACGTCTGGAACACTGAAAA 58.399 40.909 0.00 0.00 0.00 2.29
2700 9625 4.004314 TCAACGTCTGGAACACTGAAAAA 58.996 39.130 0.00 0.00 0.00 1.94
2701 9626 4.638421 TCAACGTCTGGAACACTGAAAAAT 59.362 37.500 0.00 0.00 0.00 1.82
2702 9627 4.813296 ACGTCTGGAACACTGAAAAATC 57.187 40.909 0.00 0.00 0.00 2.17
2703 9628 4.451900 ACGTCTGGAACACTGAAAAATCT 58.548 39.130 0.00 0.00 0.00 2.40
2704 9629 4.881850 ACGTCTGGAACACTGAAAAATCTT 59.118 37.500 0.00 0.00 0.00 2.40
2705 9630 5.357032 ACGTCTGGAACACTGAAAAATCTTT 59.643 36.000 0.00 0.00 0.00 2.52
2866 9792 3.752665 TCTACTCTAATCGGGAGCGATT 58.247 45.455 0.00 0.00 40.97 3.34
2867 9793 4.142790 TCTACTCTAATCGGGAGCGATTT 58.857 43.478 0.00 0.00 39.11 2.17
2982 9908 3.055094 ACACGACCTCATTCCTATGCTTT 60.055 43.478 0.00 0.00 0.00 3.51
3096 10023 1.091771 CATCCACGCTTGGTAGCCAG 61.092 60.000 9.36 0.00 44.86 4.85
3161 10088 1.359833 CAAAGACGCAGCCAAGCAA 59.640 52.632 0.00 0.00 0.00 3.91
3348 10275 0.693767 CATTGGCCTCCTCTCTCCCT 60.694 60.000 3.32 0.00 0.00 4.20
3393 10320 2.764010 TCTTACCGAGAAGCAGCCATTA 59.236 45.455 0.00 0.00 0.00 1.90
3411 10338 4.432741 GCCTCCCAAGCCCAGACC 62.433 72.222 0.00 0.00 0.00 3.85
3517 10444 1.411246 TGTTAGGTGACACGTCTTGCT 59.589 47.619 3.64 0.00 0.00 3.91
3565 10493 1.217882 CGTTCTTTTCCGTGCTCTGT 58.782 50.000 0.00 0.00 0.00 3.41
3566 10494 1.070577 CGTTCTTTTCCGTGCTCTGTG 60.071 52.381 0.00 0.00 0.00 3.66
3567 10495 1.940613 GTTCTTTTCCGTGCTCTGTGT 59.059 47.619 0.00 0.00 0.00 3.72
3568 10496 2.325583 TCTTTTCCGTGCTCTGTGTT 57.674 45.000 0.00 0.00 0.00 3.32
3569 10497 1.939934 TCTTTTCCGTGCTCTGTGTTG 59.060 47.619 0.00 0.00 0.00 3.33
3570 10498 1.002468 CTTTTCCGTGCTCTGTGTTGG 60.002 52.381 0.00 0.00 0.00 3.77
3571 10499 0.817634 TTTCCGTGCTCTGTGTTGGG 60.818 55.000 0.00 0.00 0.00 4.12
3572 10500 2.669569 CCGTGCTCTGTGTTGGGG 60.670 66.667 0.00 0.00 0.00 4.96
3573 10501 2.425592 CGTGCTCTGTGTTGGGGA 59.574 61.111 0.00 0.00 0.00 4.81
3574 10502 1.227823 CGTGCTCTGTGTTGGGGAA 60.228 57.895 0.00 0.00 0.00 3.97
3575 10503 1.507141 CGTGCTCTGTGTTGGGGAAC 61.507 60.000 0.00 0.00 0.00 3.62
3576 10504 1.227823 TGCTCTGTGTTGGGGAACG 60.228 57.895 0.00 0.00 0.00 3.95
3577 10505 1.227853 GCTCTGTGTTGGGGAACGT 60.228 57.895 0.00 0.00 0.00 3.99
3578 10506 0.818040 GCTCTGTGTTGGGGAACGTT 60.818 55.000 0.00 0.00 0.00 3.99
3579 10507 0.944386 CTCTGTGTTGGGGAACGTTG 59.056 55.000 5.00 0.00 0.00 4.10
3580 10508 1.098712 TCTGTGTTGGGGAACGTTGC 61.099 55.000 11.85 11.85 0.00 4.17
3581 10509 1.378646 TGTGTTGGGGAACGTTGCA 60.379 52.632 21.74 0.00 0.00 4.08
3582 10510 1.358759 GTGTTGGGGAACGTTGCAG 59.641 57.895 21.74 0.00 0.00 4.41
3583 10511 1.098712 GTGTTGGGGAACGTTGCAGA 61.099 55.000 21.74 3.97 0.00 4.26
3584 10512 0.394488 TGTTGGGGAACGTTGCAGAA 60.394 50.000 21.74 10.10 0.00 3.02
3585 10513 0.741915 GTTGGGGAACGTTGCAGAAA 59.258 50.000 21.74 9.26 0.00 2.52
3586 10514 1.135333 GTTGGGGAACGTTGCAGAAAA 59.865 47.619 21.74 6.84 0.00 2.29
3587 10515 1.698506 TGGGGAACGTTGCAGAAAAT 58.301 45.000 21.74 0.00 0.00 1.82
3588 10516 2.035632 TGGGGAACGTTGCAGAAAATT 58.964 42.857 21.74 0.00 0.00 1.82
3589 10517 3.223435 TGGGGAACGTTGCAGAAAATTA 58.777 40.909 21.74 0.00 0.00 1.40
3590 10518 3.637229 TGGGGAACGTTGCAGAAAATTAA 59.363 39.130 21.74 0.00 0.00 1.40
3591 10519 4.099573 TGGGGAACGTTGCAGAAAATTAAA 59.900 37.500 21.74 0.00 0.00 1.52
3592 10520 5.051153 GGGGAACGTTGCAGAAAATTAAAA 58.949 37.500 21.74 0.00 0.00 1.52
3593 10521 5.699001 GGGGAACGTTGCAGAAAATTAAAAT 59.301 36.000 21.74 0.00 0.00 1.82
3594 10522 6.203915 GGGGAACGTTGCAGAAAATTAAAATT 59.796 34.615 21.74 0.00 0.00 1.82
3595 10523 7.254966 GGGGAACGTTGCAGAAAATTAAAATTT 60.255 33.333 21.74 0.00 40.15 1.82
3597 10525 9.497030 GGAACGTTGCAGAAAATTAAAATTTTT 57.503 25.926 15.52 0.00 45.70 1.94
3599 10527 9.497030 AACGTTGCAGAAAATTAAAATTTTTCC 57.503 25.926 9.06 3.98 45.70 3.13
3600 10528 8.888716 ACGTTGCAGAAAATTAAAATTTTTCCT 58.111 25.926 9.06 5.83 45.70 3.36
3604 10532 8.983724 TGCAGAAAATTAAAATTTTTCCTACGG 58.016 29.630 9.06 4.45 45.70 4.02
3605 10533 8.984764 GCAGAAAATTAAAATTTTTCCTACGGT 58.015 29.630 9.06 0.00 45.70 4.83
3611 10539 8.821147 ATTAAAATTTTTCCTACGGTTTCACC 57.179 30.769 9.06 0.00 34.05 4.02
3612 10540 5.855740 AAATTTTTCCTACGGTTTCACCA 57.144 34.783 0.00 0.00 38.47 4.17
3613 10541 5.855740 AATTTTTCCTACGGTTTCACCAA 57.144 34.783 0.00 0.00 38.47 3.67
3614 10542 4.904253 TTTTTCCTACGGTTTCACCAAG 57.096 40.909 0.00 0.00 38.47 3.61
3615 10543 3.842007 TTTCCTACGGTTTCACCAAGA 57.158 42.857 0.00 0.00 38.47 3.02
3616 10544 4.360951 TTTCCTACGGTTTCACCAAGAT 57.639 40.909 0.00 0.00 38.47 2.40
3617 10545 3.604875 TCCTACGGTTTCACCAAGATC 57.395 47.619 0.00 0.00 38.47 2.75
3618 10546 2.235402 TCCTACGGTTTCACCAAGATCC 59.765 50.000 0.00 0.00 38.47 3.36
3619 10547 2.027561 CCTACGGTTTCACCAAGATCCA 60.028 50.000 0.00 0.00 38.47 3.41
3620 10548 2.879103 ACGGTTTCACCAAGATCCAT 57.121 45.000 0.00 0.00 38.47 3.41
3621 10549 2.711542 ACGGTTTCACCAAGATCCATC 58.288 47.619 0.00 0.00 38.47 3.51
3622 10550 2.305927 ACGGTTTCACCAAGATCCATCT 59.694 45.455 0.00 0.00 38.47 2.90
3623 10551 3.517901 ACGGTTTCACCAAGATCCATCTA 59.482 43.478 0.00 0.00 38.47 1.98
3624 10552 4.164221 ACGGTTTCACCAAGATCCATCTAT 59.836 41.667 0.00 0.00 38.47 1.98
3625 10553 4.512944 CGGTTTCACCAAGATCCATCTATG 59.487 45.833 0.00 0.00 38.47 2.23
3626 10554 5.684704 GGTTTCACCAAGATCCATCTATGA 58.315 41.667 0.00 0.00 38.42 2.15
3627 10555 5.762218 GGTTTCACCAAGATCCATCTATGAG 59.238 44.000 0.00 0.00 38.42 2.90
3628 10556 6.352516 GTTTCACCAAGATCCATCTATGAGT 58.647 40.000 0.00 0.00 35.76 3.41
3629 10557 6.566079 TTCACCAAGATCCATCTATGAGTT 57.434 37.500 0.00 0.00 35.76 3.01
3630 10558 6.166984 TCACCAAGATCCATCTATGAGTTC 57.833 41.667 0.00 0.00 35.76 3.01
3631 10559 5.662657 TCACCAAGATCCATCTATGAGTTCA 59.337 40.000 0.00 0.00 35.76 3.18
3632 10560 6.328410 TCACCAAGATCCATCTATGAGTTCAT 59.672 38.462 0.00 0.00 35.76 2.57
3633 10561 6.649973 CACCAAGATCCATCTATGAGTTCATC 59.350 42.308 0.00 0.00 35.76 2.92
3634 10562 6.558014 ACCAAGATCCATCTATGAGTTCATCT 59.442 38.462 0.00 0.00 35.76 2.90
3635 10563 7.732140 ACCAAGATCCATCTATGAGTTCATCTA 59.268 37.037 0.00 0.00 35.76 1.98
3636 10564 8.591940 CCAAGATCCATCTATGAGTTCATCTAA 58.408 37.037 0.00 0.00 35.76 2.10
3637 10565 9.642327 CAAGATCCATCTATGAGTTCATCTAAG 57.358 37.037 0.00 0.00 35.76 2.18
3638 10566 7.839907 AGATCCATCTATGAGTTCATCTAAGC 58.160 38.462 0.00 0.00 37.76 3.09
3639 10567 6.983906 TCCATCTATGAGTTCATCTAAGCA 57.016 37.500 0.00 0.00 37.76 3.91
3640 10568 7.365497 TCCATCTATGAGTTCATCTAAGCAA 57.635 36.000 0.00 0.00 37.76 3.91
3641 10569 7.212976 TCCATCTATGAGTTCATCTAAGCAAC 58.787 38.462 0.00 0.00 37.76 4.17
3642 10570 6.145209 CCATCTATGAGTTCATCTAAGCAACG 59.855 42.308 0.00 0.00 37.76 4.10
3643 10571 6.451064 TCTATGAGTTCATCTAAGCAACGA 57.549 37.500 0.00 0.00 37.76 3.85
3644 10572 6.499172 TCTATGAGTTCATCTAAGCAACGAG 58.501 40.000 0.00 0.00 37.76 4.18
3645 10573 4.521130 TGAGTTCATCTAAGCAACGAGT 57.479 40.909 0.00 0.00 0.00 4.18
3646 10574 4.486090 TGAGTTCATCTAAGCAACGAGTC 58.514 43.478 0.00 0.00 0.00 3.36
3647 10575 4.022329 TGAGTTCATCTAAGCAACGAGTCA 60.022 41.667 0.00 0.00 0.00 3.41
3648 10576 4.883083 AGTTCATCTAAGCAACGAGTCAA 58.117 39.130 0.00 0.00 0.00 3.18
3649 10577 4.926238 AGTTCATCTAAGCAACGAGTCAAG 59.074 41.667 0.00 0.00 0.00 3.02
3650 10578 3.849911 TCATCTAAGCAACGAGTCAAGG 58.150 45.455 0.00 0.00 0.00 3.61
3651 10579 2.743636 TCTAAGCAACGAGTCAAGGG 57.256 50.000 0.00 0.00 0.00 3.95
3652 10580 2.244695 TCTAAGCAACGAGTCAAGGGA 58.755 47.619 0.00 0.00 0.00 4.20
3653 10581 2.231478 TCTAAGCAACGAGTCAAGGGAG 59.769 50.000 0.00 0.00 0.00 4.30
3654 10582 0.759346 AAGCAACGAGTCAAGGGAGT 59.241 50.000 0.00 0.00 0.00 3.85
3655 10583 0.034059 AGCAACGAGTCAAGGGAGTG 59.966 55.000 0.00 0.00 0.00 3.51
3656 10584 0.033504 GCAACGAGTCAAGGGAGTGA 59.966 55.000 0.00 0.00 0.00 3.41
3657 10585 1.937108 GCAACGAGTCAAGGGAGTGAG 60.937 57.143 0.00 0.00 0.00 3.51
3658 10586 1.341531 CAACGAGTCAAGGGAGTGAGT 59.658 52.381 0.00 0.00 33.76 3.41
3659 10587 1.705873 ACGAGTCAAGGGAGTGAGTT 58.294 50.000 0.00 0.00 31.14 3.01
3660 10588 2.040178 ACGAGTCAAGGGAGTGAGTTT 58.960 47.619 0.00 0.00 31.14 2.66
3661 10589 2.224066 ACGAGTCAAGGGAGTGAGTTTG 60.224 50.000 0.00 0.00 31.14 2.93
3662 10590 2.147150 GAGTCAAGGGAGTGAGTTTGC 58.853 52.381 0.00 0.00 31.14 3.68
3663 10591 1.490490 AGTCAAGGGAGTGAGTTTGCA 59.510 47.619 0.00 0.00 0.00 4.08
3664 10592 2.107204 AGTCAAGGGAGTGAGTTTGCAT 59.893 45.455 0.00 0.00 0.00 3.96
3665 10593 2.485814 GTCAAGGGAGTGAGTTTGCATC 59.514 50.000 0.00 0.00 0.00 3.91
3666 10594 2.373169 TCAAGGGAGTGAGTTTGCATCT 59.627 45.455 0.00 0.00 0.00 2.90
3667 10595 3.582647 TCAAGGGAGTGAGTTTGCATCTA 59.417 43.478 0.00 0.00 0.00 1.98
3668 10596 3.618690 AGGGAGTGAGTTTGCATCTAC 57.381 47.619 0.00 0.00 0.00 2.59
3669 10597 2.906389 AGGGAGTGAGTTTGCATCTACA 59.094 45.455 0.00 0.00 0.00 2.74
3670 10598 3.521126 AGGGAGTGAGTTTGCATCTACAT 59.479 43.478 0.00 0.00 0.00 2.29
3671 10599 4.716784 AGGGAGTGAGTTTGCATCTACATA 59.283 41.667 0.00 0.00 0.00 2.29
3672 10600 4.811557 GGGAGTGAGTTTGCATCTACATAC 59.188 45.833 0.00 0.00 0.00 2.39
3673 10601 4.811557 GGAGTGAGTTTGCATCTACATACC 59.188 45.833 0.00 0.00 0.00 2.73
3674 10602 5.419542 GAGTGAGTTTGCATCTACATACCA 58.580 41.667 0.00 0.00 0.00 3.25
3675 10603 5.178797 AGTGAGTTTGCATCTACATACCAC 58.821 41.667 0.00 0.00 0.00 4.16
3676 10604 5.046304 AGTGAGTTTGCATCTACATACCACT 60.046 40.000 0.00 0.00 33.12 4.00
3677 10605 5.643777 GTGAGTTTGCATCTACATACCACTT 59.356 40.000 0.00 0.00 0.00 3.16
3678 10606 5.643348 TGAGTTTGCATCTACATACCACTTG 59.357 40.000 0.00 0.00 0.00 3.16
3679 10607 5.560724 AGTTTGCATCTACATACCACTTGT 58.439 37.500 0.00 0.00 0.00 3.16
3680 10608 6.707290 AGTTTGCATCTACATACCACTTGTA 58.293 36.000 0.00 0.00 0.00 2.41
3681 10609 6.818644 AGTTTGCATCTACATACCACTTGTAG 59.181 38.462 4.81 4.81 45.12 2.74
3686 10614 5.434352 TCTACATACCACTTGTAGATCGC 57.566 43.478 8.96 0.00 46.52 4.58
3687 10615 3.079960 ACATACCACTTGTAGATCGCG 57.920 47.619 0.00 0.00 31.61 5.87
3688 10616 2.426024 ACATACCACTTGTAGATCGCGT 59.574 45.455 5.77 0.00 31.61 6.01
3689 10617 3.628942 ACATACCACTTGTAGATCGCGTA 59.371 43.478 5.77 0.00 31.61 4.42
3690 10618 2.556534 ACCACTTGTAGATCGCGTAC 57.443 50.000 5.77 1.65 0.00 3.67
3691 10619 1.202110 ACCACTTGTAGATCGCGTACG 60.202 52.381 11.84 11.84 42.01 3.67
3692 10620 1.463805 CACTTGTAGATCGCGTACGG 58.536 55.000 18.39 7.41 40.63 4.02
3693 10621 1.063027 CACTTGTAGATCGCGTACGGA 59.937 52.381 18.39 12.84 40.63 4.69
3694 10622 1.739466 ACTTGTAGATCGCGTACGGAA 59.261 47.619 18.39 0.00 40.63 4.30
3695 10623 2.223203 ACTTGTAGATCGCGTACGGAAG 60.223 50.000 18.39 8.07 40.63 3.46
3696 10624 0.028505 TGTAGATCGCGTACGGAAGC 59.971 55.000 18.39 0.00 40.63 3.86
3702 10630 4.771684 GCGTACGGAAGCGTTAGA 57.228 55.556 18.39 0.00 0.00 2.10
3703 10631 2.563614 GCGTACGGAAGCGTTAGAG 58.436 57.895 18.39 0.00 0.00 2.43
3704 10632 0.864797 GCGTACGGAAGCGTTAGAGG 60.865 60.000 18.39 0.00 0.00 3.69
3705 10633 0.248377 CGTACGGAAGCGTTAGAGGG 60.248 60.000 7.57 0.00 0.00 4.30
3706 10634 1.098050 GTACGGAAGCGTTAGAGGGA 58.902 55.000 0.00 0.00 0.00 4.20
3707 10635 1.065251 GTACGGAAGCGTTAGAGGGAG 59.935 57.143 0.00 0.00 0.00 4.30
3708 10636 1.227002 CGGAAGCGTTAGAGGGAGC 60.227 63.158 0.00 0.00 0.00 4.70
3709 10637 1.227002 GGAAGCGTTAGAGGGAGCG 60.227 63.158 0.00 0.00 34.34 5.03
3710 10638 1.227002 GAAGCGTTAGAGGGAGCGG 60.227 63.158 0.00 0.00 34.34 5.52
3711 10639 1.946475 GAAGCGTTAGAGGGAGCGGT 61.946 60.000 0.00 0.00 36.61 5.68
3712 10640 2.202756 GCGTTAGAGGGAGCGGTG 60.203 66.667 0.00 0.00 0.00 4.94
3713 10641 2.707849 GCGTTAGAGGGAGCGGTGA 61.708 63.158 0.00 0.00 0.00 4.02
3714 10642 2.017559 GCGTTAGAGGGAGCGGTGAT 62.018 60.000 0.00 0.00 0.00 3.06
3715 10643 0.249073 CGTTAGAGGGAGCGGTGATG 60.249 60.000 0.00 0.00 0.00 3.07
3716 10644 1.112113 GTTAGAGGGAGCGGTGATGA 58.888 55.000 0.00 0.00 0.00 2.92
3717 10645 1.689273 GTTAGAGGGAGCGGTGATGAT 59.311 52.381 0.00 0.00 0.00 2.45
3718 10646 1.332195 TAGAGGGAGCGGTGATGATG 58.668 55.000 0.00 0.00 0.00 3.07
3719 10647 1.070445 GAGGGAGCGGTGATGATGG 59.930 63.158 0.00 0.00 0.00 3.51
3720 10648 1.383109 AGGGAGCGGTGATGATGGA 60.383 57.895 0.00 0.00 0.00 3.41
3721 10649 1.070445 GGGAGCGGTGATGATGGAG 59.930 63.158 0.00 0.00 0.00 3.86
3722 10650 1.690219 GGGAGCGGTGATGATGGAGT 61.690 60.000 0.00 0.00 0.00 3.85
3723 10651 0.249657 GGAGCGGTGATGATGGAGTC 60.250 60.000 0.00 0.00 0.00 3.36
3724 10652 0.596083 GAGCGGTGATGATGGAGTCG 60.596 60.000 0.00 0.00 0.00 4.18
3725 10653 1.141881 GCGGTGATGATGGAGTCGT 59.858 57.895 0.00 0.00 0.00 4.34
3726 10654 0.384309 GCGGTGATGATGGAGTCGTA 59.616 55.000 0.00 0.00 0.00 3.43
3727 10655 1.864435 GCGGTGATGATGGAGTCGTAC 60.864 57.143 0.00 0.00 0.00 3.67
3728 10656 1.676529 CGGTGATGATGGAGTCGTACT 59.323 52.381 0.00 0.00 0.00 2.73
3729 10657 2.287069 CGGTGATGATGGAGTCGTACTC 60.287 54.545 6.50 6.50 44.32 2.59
3730 10658 2.287069 GGTGATGATGGAGTCGTACTCG 60.287 54.545 8.33 0.00 45.96 4.18
3731 10659 1.333931 TGATGATGGAGTCGTACTCGC 59.666 52.381 8.33 3.96 45.96 5.03
3732 10660 0.669077 ATGATGGAGTCGTACTCGCC 59.331 55.000 8.33 0.00 45.96 5.54
3733 10661 1.009900 GATGGAGTCGTACTCGCCG 60.010 63.158 8.33 0.00 45.96 6.46
3734 10662 1.712977 GATGGAGTCGTACTCGCCGT 61.713 60.000 8.33 3.07 45.96 5.68
3735 10663 1.989966 ATGGAGTCGTACTCGCCGTG 61.990 60.000 8.33 0.00 45.96 4.94
3736 10664 2.393768 GGAGTCGTACTCGCCGTGA 61.394 63.158 8.33 0.00 45.96 4.35
3737 10665 1.712977 GGAGTCGTACTCGCCGTGAT 61.713 60.000 8.33 0.00 45.96 3.06
3738 10666 0.098376 GAGTCGTACTCGCCGTGATT 59.902 55.000 0.00 0.00 35.28 2.57
3739 10667 0.098376 AGTCGTACTCGCCGTGATTC 59.902 55.000 0.00 0.00 36.96 2.52
3740 10668 0.179181 GTCGTACTCGCCGTGATTCA 60.179 55.000 0.00 0.00 36.96 2.57
3741 10669 0.098200 TCGTACTCGCCGTGATTCAG 59.902 55.000 0.00 0.00 36.96 3.02
3742 10670 0.098200 CGTACTCGCCGTGATTCAGA 59.902 55.000 0.00 0.00 0.00 3.27
3743 10671 1.268589 CGTACTCGCCGTGATTCAGAT 60.269 52.381 0.00 0.00 0.00 2.90
3744 10672 2.386249 GTACTCGCCGTGATTCAGATC 58.614 52.381 0.00 0.00 0.00 2.75
3745 10673 0.817654 ACTCGCCGTGATTCAGATCA 59.182 50.000 0.00 0.00 39.92 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 7.333423 TGTGTTCTTGCTGTATTAGGACAATAC 59.667 37.037 0.00 1.12 29.58 1.89
42 43 7.390823 TGTGTTCTTGCTGTATTAGGACAATA 58.609 34.615 0.00 0.00 29.58 1.90
46 47 6.743575 ATTGTGTTCTTGCTGTATTAGGAC 57.256 37.500 0.00 0.00 0.00 3.85
48 49 9.906660 TTAAAATTGTGTTCTTGCTGTATTAGG 57.093 29.630 0.00 0.00 0.00 2.69
56 57 6.273071 GGAGTGTTAAAATTGTGTTCTTGCT 58.727 36.000 0.00 0.00 0.00 3.91
95 96 6.314784 GCTTTCAAATGGTCACTGTGTATAC 58.685 40.000 7.79 0.00 0.00 1.47
108 109 0.247185 ACCATGCCGCTTTCAAATGG 59.753 50.000 4.09 4.09 42.88 3.16
114 115 1.727857 CGTTTACACCATGCCGCTTTC 60.728 52.381 0.00 0.00 0.00 2.62
118 119 1.423845 CTCGTTTACACCATGCCGC 59.576 57.895 0.00 0.00 0.00 6.53
121 122 1.654023 GGGCCTCGTTTACACCATGC 61.654 60.000 0.84 0.00 0.00 4.06
124 125 0.250553 CTTGGGCCTCGTTTACACCA 60.251 55.000 4.53 0.00 0.00 4.17
146 148 3.929955 TCCATCAGTTACATGCCATGA 57.070 42.857 12.53 0.00 0.00 3.07
149 151 2.300433 GCATCCATCAGTTACATGCCA 58.700 47.619 0.00 0.00 34.91 4.92
151 154 2.033801 GGTGCATCCATCAGTTACATGC 59.966 50.000 0.00 0.00 40.29 4.06
209 212 8.826765 CCCAACCAAATATGTCTACCTATATCT 58.173 37.037 0.00 0.00 0.00 1.98
210 213 7.553044 GCCCAACCAAATATGTCTACCTATATC 59.447 40.741 0.00 0.00 0.00 1.63
211 214 7.239773 AGCCCAACCAAATATGTCTACCTATAT 59.760 37.037 0.00 0.00 0.00 0.86
212 215 6.561070 AGCCCAACCAAATATGTCTACCTATA 59.439 38.462 0.00 0.00 0.00 1.31
213 216 5.372661 AGCCCAACCAAATATGTCTACCTAT 59.627 40.000 0.00 0.00 0.00 2.57
214 217 4.724798 AGCCCAACCAAATATGTCTACCTA 59.275 41.667 0.00 0.00 0.00 3.08
215 218 3.527665 AGCCCAACCAAATATGTCTACCT 59.472 43.478 0.00 0.00 0.00 3.08
216 219 3.898482 AGCCCAACCAAATATGTCTACC 58.102 45.455 0.00 0.00 0.00 3.18
217 220 4.440112 GCAAGCCCAACCAAATATGTCTAC 60.440 45.833 0.00 0.00 0.00 2.59
218 221 3.699038 GCAAGCCCAACCAAATATGTCTA 59.301 43.478 0.00 0.00 0.00 2.59
219 222 2.497273 GCAAGCCCAACCAAATATGTCT 59.503 45.455 0.00 0.00 0.00 3.41
220 223 2.418609 GGCAAGCCCAACCAAATATGTC 60.419 50.000 0.00 0.00 0.00 3.06
221 224 1.554617 GGCAAGCCCAACCAAATATGT 59.445 47.619 0.00 0.00 0.00 2.29
222 225 1.832998 AGGCAAGCCCAACCAAATATG 59.167 47.619 7.62 0.00 36.58 1.78
223 226 2.110578 GAGGCAAGCCCAACCAAATAT 58.889 47.619 7.62 0.00 36.58 1.28
224 227 1.203112 TGAGGCAAGCCCAACCAAATA 60.203 47.619 7.62 0.00 36.58 1.40
225 228 0.471591 TGAGGCAAGCCCAACCAAAT 60.472 50.000 7.62 0.00 36.58 2.32
226 229 0.471591 ATGAGGCAAGCCCAACCAAA 60.472 50.000 7.62 0.00 36.58 3.28
227 230 1.155859 ATGAGGCAAGCCCAACCAA 59.844 52.632 7.62 0.00 36.58 3.67
228 231 1.607178 CATGAGGCAAGCCCAACCA 60.607 57.895 7.62 1.68 36.58 3.67
229 232 1.304381 TCATGAGGCAAGCCCAACC 60.304 57.895 7.62 0.00 36.58 3.77
230 233 1.598701 GGTCATGAGGCAAGCCCAAC 61.599 60.000 7.62 0.65 36.58 3.77
231 234 1.304381 GGTCATGAGGCAAGCCCAA 60.304 57.895 7.62 0.00 36.58 4.12
232 235 2.356278 GGTCATGAGGCAAGCCCA 59.644 61.111 7.62 6.11 36.58 5.36
233 236 2.440980 GGGTCATGAGGCAAGCCC 60.441 66.667 7.62 0.00 36.58 5.19
234 237 1.304381 TTGGGTCATGAGGCAAGCC 60.304 57.895 2.02 2.02 0.00 4.35
235 238 0.610232 AGTTGGGTCATGAGGCAAGC 60.610 55.000 0.00 0.00 0.00 4.01
236 239 1.271543 TGAGTTGGGTCATGAGGCAAG 60.272 52.381 0.00 0.00 0.00 4.01
237 240 0.770499 TGAGTTGGGTCATGAGGCAA 59.230 50.000 0.00 0.00 0.00 4.52
238 241 0.994247 ATGAGTTGGGTCATGAGGCA 59.006 50.000 0.00 0.00 35.76 4.75
239 242 3.890527 ATGAGTTGGGTCATGAGGC 57.109 52.632 0.00 0.00 35.76 4.70
244 247 7.147497 TGTTCATAGATACATGAGTTGGGTCAT 60.147 37.037 0.00 0.00 37.68 3.06
245 248 6.156083 TGTTCATAGATACATGAGTTGGGTCA 59.844 38.462 0.00 0.00 36.34 4.02
246 249 6.582636 TGTTCATAGATACATGAGTTGGGTC 58.417 40.000 0.00 0.00 36.34 4.46
247 250 6.560003 TGTTCATAGATACATGAGTTGGGT 57.440 37.500 0.00 0.00 36.34 4.51
248 251 9.730705 ATATTGTTCATAGATACATGAGTTGGG 57.269 33.333 0.00 0.00 36.34 4.12
264 267 8.405531 CCGACTTTATTGGTTGATATTGTTCAT 58.594 33.333 0.00 0.00 0.00 2.57
265 268 7.148154 CCCGACTTTATTGGTTGATATTGTTCA 60.148 37.037 0.00 0.00 0.00 3.18
266 269 7.193595 CCCGACTTTATTGGTTGATATTGTTC 58.806 38.462 0.00 0.00 0.00 3.18
267 270 6.405397 GCCCGACTTTATTGGTTGATATTGTT 60.405 38.462 0.00 0.00 0.00 2.83
268 271 5.067283 GCCCGACTTTATTGGTTGATATTGT 59.933 40.000 0.00 0.00 0.00 2.71
269 272 5.519722 GCCCGACTTTATTGGTTGATATTG 58.480 41.667 0.00 0.00 0.00 1.90
270 273 4.274950 CGCCCGACTTTATTGGTTGATATT 59.725 41.667 0.00 0.00 0.00 1.28
271 274 3.813166 CGCCCGACTTTATTGGTTGATAT 59.187 43.478 0.00 0.00 0.00 1.63
272 275 3.118702 TCGCCCGACTTTATTGGTTGATA 60.119 43.478 0.00 0.00 0.00 2.15
273 276 2.014128 CGCCCGACTTTATTGGTTGAT 58.986 47.619 0.00 0.00 0.00 2.57
274 277 1.002201 TCGCCCGACTTTATTGGTTGA 59.998 47.619 0.00 0.00 0.00 3.18
275 278 1.396996 CTCGCCCGACTTTATTGGTTG 59.603 52.381 0.00 0.00 0.00 3.77
276 279 1.276989 TCTCGCCCGACTTTATTGGTT 59.723 47.619 0.00 0.00 0.00 3.67
277 280 0.899720 TCTCGCCCGACTTTATTGGT 59.100 50.000 0.00 0.00 0.00 3.67
278 281 2.240493 ATCTCGCCCGACTTTATTGG 57.760 50.000 0.00 0.00 0.00 3.16
279 282 3.871594 AGAAATCTCGCCCGACTTTATTG 59.128 43.478 0.00 0.00 0.00 1.90
280 283 4.120589 GAGAAATCTCGCCCGACTTTATT 58.879 43.478 0.00 0.00 32.78 1.40
281 284 3.132289 TGAGAAATCTCGCCCGACTTTAT 59.868 43.478 5.99 0.00 45.72 1.40
282 285 2.494471 TGAGAAATCTCGCCCGACTTTA 59.506 45.455 5.99 0.00 45.72 1.85
283 286 1.275291 TGAGAAATCTCGCCCGACTTT 59.725 47.619 5.99 0.00 45.72 2.66
284 287 0.895530 TGAGAAATCTCGCCCGACTT 59.104 50.000 5.99 0.00 45.72 3.01
285 288 0.895530 TTGAGAAATCTCGCCCGACT 59.104 50.000 5.99 0.00 45.72 4.18
286 289 1.722011 TTTGAGAAATCTCGCCCGAC 58.278 50.000 5.99 0.00 45.72 4.79
287 290 2.465860 TTTTGAGAAATCTCGCCCGA 57.534 45.000 5.99 0.00 45.72 5.14
309 312 5.481473 AGGTGCATCCATCAGTTACATTTTT 59.519 36.000 0.00 0.00 39.02 1.94
310 313 5.018809 AGGTGCATCCATCAGTTACATTTT 58.981 37.500 0.00 0.00 39.02 1.82
311 314 4.400251 CAGGTGCATCCATCAGTTACATTT 59.600 41.667 0.00 0.00 39.02 2.32
312 315 3.949754 CAGGTGCATCCATCAGTTACATT 59.050 43.478 0.00 0.00 39.02 2.71
313 316 3.548770 CAGGTGCATCCATCAGTTACAT 58.451 45.455 0.00 0.00 39.02 2.29
340 343 6.128007 CCACCTTACGCTATTTCAGTCAAAAT 60.128 38.462 0.00 0.00 33.54 1.82
356 2650 1.243902 ATTTGCACCACCACCTTACG 58.756 50.000 0.00 0.00 0.00 3.18
385 2680 3.316283 TGCGGATCATTTCTTTTTGTGC 58.684 40.909 0.00 0.00 0.00 4.57
386 2681 7.760131 ATAATGCGGATCATTTCTTTTTGTG 57.240 32.000 0.00 0.00 42.48 3.33
387 2682 9.520204 CTAATAATGCGGATCATTTCTTTTTGT 57.480 29.630 0.00 0.00 42.48 2.83
442 2750 5.104527 TCTCAGTTATTGTGAGGGGTATTGG 60.105 44.000 0.47 0.00 41.62 3.16
443 2751 5.989477 TCTCAGTTATTGTGAGGGGTATTG 58.011 41.667 0.47 0.00 41.62 1.90
444 2752 6.831664 ATCTCAGTTATTGTGAGGGGTATT 57.168 37.500 0.47 0.00 41.62 1.89
445 2753 9.261035 CTATATCTCAGTTATTGTGAGGGGTAT 57.739 37.037 0.47 1.35 41.62 2.73
446 2754 7.674348 CCTATATCTCAGTTATTGTGAGGGGTA 59.326 40.741 0.47 0.00 41.62 3.69
447 2755 6.498651 CCTATATCTCAGTTATTGTGAGGGGT 59.501 42.308 0.47 0.00 41.62 4.95
448 2756 6.070538 CCCTATATCTCAGTTATTGTGAGGGG 60.071 46.154 0.00 0.00 41.62 4.79
449 2757 6.498651 ACCCTATATCTCAGTTATTGTGAGGG 59.501 42.308 6.73 6.73 41.62 4.30
450 2758 7.546250 ACCCTATATCTCAGTTATTGTGAGG 57.454 40.000 0.47 0.00 41.62 3.86
451 2759 7.040340 ACGACCCTATATCTCAGTTATTGTGAG 60.040 40.741 0.00 0.00 42.51 3.51
452 2760 6.776116 ACGACCCTATATCTCAGTTATTGTGA 59.224 38.462 0.00 0.00 34.13 3.58
453 2761 6.982852 ACGACCCTATATCTCAGTTATTGTG 58.017 40.000 0.00 0.00 0.00 3.33
454 2762 6.072618 CGACGACCCTATATCTCAGTTATTGT 60.073 42.308 0.00 0.00 0.00 2.71
490 2798 8.041323 GGACTAGAAAACAGAGTGGAATGATAA 58.959 37.037 0.00 0.00 0.00 1.75
491 2799 7.180229 TGGACTAGAAAACAGAGTGGAATGATA 59.820 37.037 0.00 0.00 0.00 2.15
536 2850 9.849166 GTTCTGGGATGTTTATTTTTCGAAATA 57.151 29.630 12.12 7.52 0.00 1.40
537 2851 8.364142 TGTTCTGGGATGTTTATTTTTCGAAAT 58.636 29.630 12.12 0.00 0.00 2.17
538 2852 7.717568 TGTTCTGGGATGTTTATTTTTCGAAA 58.282 30.769 6.47 6.47 0.00 3.46
539 2853 7.278461 TGTTCTGGGATGTTTATTTTTCGAA 57.722 32.000 0.00 0.00 0.00 3.71
541 2855 7.312154 TGATGTTCTGGGATGTTTATTTTTCG 58.688 34.615 0.00 0.00 0.00 3.46
552 2868 6.531923 ACTCTATGAATGATGTTCTGGGATG 58.468 40.000 0.00 0.00 0.00 3.51
610 2934 9.692749 CCGCTAAGAACAAATTATAGAGTATGA 57.307 33.333 0.00 0.00 0.00 2.15
612 2936 9.477484 CACCGCTAAGAACAAATTATAGAGTAT 57.523 33.333 0.00 0.00 0.00 2.12
613 2937 7.924412 CCACCGCTAAGAACAAATTATAGAGTA 59.076 37.037 0.00 0.00 0.00 2.59
614 2938 6.761714 CCACCGCTAAGAACAAATTATAGAGT 59.238 38.462 0.00 0.00 0.00 3.24
615 2939 6.761714 ACCACCGCTAAGAACAAATTATAGAG 59.238 38.462 0.00 0.00 0.00 2.43
616 2940 6.646267 ACCACCGCTAAGAACAAATTATAGA 58.354 36.000 0.00 0.00 0.00 1.98
617 2941 6.920569 ACCACCGCTAAGAACAAATTATAG 57.079 37.500 0.00 0.00 0.00 1.31
618 2942 6.036300 CGAACCACCGCTAAGAACAAATTATA 59.964 38.462 0.00 0.00 0.00 0.98
645 2969 5.517770 GCAAATCAGTGCTTGAACCATTATC 59.482 40.000 8.49 0.00 41.51 1.75
664 2988 0.740737 GGTGCTCCGCTATTGCAAAT 59.259 50.000 1.71 0.00 38.50 2.32
683 3011 1.283793 CGCTGCAAGTTTCCAGGTG 59.716 57.895 0.00 0.00 35.30 4.00
684 3012 1.152963 ACGCTGCAAGTTTCCAGGT 60.153 52.632 0.00 0.00 35.30 4.00
685 3013 1.165907 TGACGCTGCAAGTTTCCAGG 61.166 55.000 0.00 0.00 35.30 4.45
701 3029 2.479566 TGGTCTCAATCAGGCTTGAC 57.520 50.000 0.00 0.00 35.83 3.18
735 3065 1.334869 CAGCGTTGCCTGAAGAAACTT 59.665 47.619 0.00 0.00 34.77 2.66
742 3072 0.662619 CTGTTTCAGCGTTGCCTGAA 59.337 50.000 0.00 0.81 46.85 3.02
746 4796 0.944386 TCTTCTGTTTCAGCGTTGCC 59.056 50.000 0.00 0.00 0.00 4.52
818 4929 6.306987 AGATCCACATTAAAAACCTCTGTGT 58.693 36.000 0.00 0.00 36.37 3.72
820 4936 6.656693 CAGAGATCCACATTAAAAACCTCTGT 59.343 38.462 0.00 0.00 39.84 3.41
860 4976 1.966451 CACCCTGCAACTTCGACCC 60.966 63.158 0.00 0.00 0.00 4.46
988 6340 2.898612 TGAATTTGACATGCACCACCAT 59.101 40.909 0.00 0.00 0.00 3.55
1031 6405 0.934436 CAAAAACAGCGGCCAGTTCG 60.934 55.000 2.24 0.00 0.00 3.95
1047 6421 4.782019 ACTTGTCAGTTGCTGAAACAAA 57.218 36.364 0.56 0.00 42.46 2.83
1153 6547 1.238439 CTGGCTGACCGACACAAATT 58.762 50.000 0.00 0.00 39.70 1.82
1154 6548 0.606401 CCTGGCTGACCGACACAAAT 60.606 55.000 0.00 0.00 39.70 2.32
1184 6578 6.817765 TTCAAGTACTCCATCCATGAAAAC 57.182 37.500 0.00 0.00 0.00 2.43
1200 6594 4.565652 GGAGATGGCCTCAAGTTTCAAGTA 60.566 45.833 3.32 0.00 43.76 2.24
1203 6597 2.108075 TGGAGATGGCCTCAAGTTTCAA 59.892 45.455 3.32 0.00 43.76 2.69
1204 6598 1.704628 TGGAGATGGCCTCAAGTTTCA 59.295 47.619 3.32 0.00 43.76 2.69
1205 6599 2.496899 TGGAGATGGCCTCAAGTTTC 57.503 50.000 3.32 0.00 43.76 2.78
1207 6601 2.622452 CCATTGGAGATGGCCTCAAGTT 60.622 50.000 3.32 0.00 43.76 2.66
1208 6602 1.064166 CCATTGGAGATGGCCTCAAGT 60.064 52.381 3.32 0.00 43.76 3.16
1210 6604 1.002069 ACCATTGGAGATGGCCTCAA 58.998 50.000 10.37 1.39 43.76 3.02
1211 6605 0.256752 CACCATTGGAGATGGCCTCA 59.743 55.000 10.37 0.00 43.76 3.86
1212 6606 0.257039 ACACCATTGGAGATGGCCTC 59.743 55.000 10.37 0.00 42.82 4.70
1213 6607 0.257039 GACACCATTGGAGATGGCCT 59.743 55.000 10.37 0.00 42.82 5.19
1254 6748 1.083895 TGGGAGGGAAGTGGGCATA 59.916 57.895 0.00 0.00 0.00 3.14
1256 6750 3.256960 GTGGGAGGGAAGTGGGCA 61.257 66.667 0.00 0.00 0.00 5.36
1257 6751 2.539081 AAGTGGGAGGGAAGTGGGC 61.539 63.158 0.00 0.00 0.00 5.36
1335 6878 1.202806 TCTTCAGTTCACCCTGCCTTG 60.203 52.381 0.00 0.00 32.32 3.61
1343 6886 2.303022 TGAGACCCATCTTCAGTTCACC 59.697 50.000 0.00 0.00 34.34 4.02
1433 6983 6.772716 GGAAATTGAGGTAGGAAATATGCAGA 59.227 38.462 0.00 0.00 0.00 4.26
1500 7060 0.323629 TAGGCAAACCGTCTGGAAGG 59.676 55.000 1.22 1.22 42.76 3.46
2504 9155 2.342279 CGTCTTGCCACGAGGGAA 59.658 61.111 5.60 5.60 43.63 3.97
2542 9422 7.307632 CCCTTCATCACTTCTGAATTATTAGCG 60.308 40.741 0.00 0.00 32.50 4.26
2586 9496 2.430382 AAGCCAAGCATGCACACAGC 62.430 55.000 21.98 14.60 45.96 4.40
2628 9548 0.605860 CATCAGCATAGCAGGGAGGC 60.606 60.000 0.00 0.00 0.00 4.70
2634 9554 2.082231 GCATACCCATCAGCATAGCAG 58.918 52.381 0.00 0.00 0.00 4.24
2676 9601 3.469008 TCAGTGTTCCAGACGTTGAAT 57.531 42.857 0.00 0.00 0.00 2.57
2728 9653 8.413899 TCTATCTATGATCTCGATACGTCAAG 57.586 38.462 0.00 0.00 0.00 3.02
2773 9698 5.067954 AGCCGTGGATAAGTTGTAAAACTT 58.932 37.500 15.31 15.31 44.46 2.66
2958 9884 3.055094 AGCATAGGAATGAGGTCGTGTTT 60.055 43.478 0.00 0.00 34.84 2.83
2982 9908 1.887854 CTGGTTGCATGGATGTTGTGA 59.112 47.619 0.00 0.00 0.00 3.58
3096 10023 5.297776 CCTTGATCACTGGGACAAACATATC 59.702 44.000 0.00 0.00 38.70 1.63
3161 10088 4.142534 CGCCAGAAACAATCAATCACATCT 60.143 41.667 0.00 0.00 0.00 2.90
3348 10275 1.144969 CTTACCGAGCGTTCTTTGCA 58.855 50.000 0.00 0.00 33.85 4.08
3376 10303 0.462759 GCTAATGGCTGCTTCTCGGT 60.463 55.000 0.00 0.00 38.06 4.69
3393 10320 3.334054 GTCTGGGCTTGGGAGGCT 61.334 66.667 0.00 0.00 46.98 4.58
3411 10338 6.994496 TCCTGGATAATATTGAAGACAAGCTG 59.006 38.462 0.00 0.00 39.46 4.24
3517 10444 1.978455 GCCATGGTGGACGGATGGTA 61.978 60.000 14.67 0.00 40.96 3.25
3565 10493 0.394488 TTCTGCAACGTTCCCCAACA 60.394 50.000 0.00 0.00 32.14 3.33
3566 10494 0.741915 TTTCTGCAACGTTCCCCAAC 59.258 50.000 0.00 0.00 0.00 3.77
3567 10495 1.475403 TTTTCTGCAACGTTCCCCAA 58.525 45.000 0.00 0.00 0.00 4.12
3568 10496 1.698506 ATTTTCTGCAACGTTCCCCA 58.301 45.000 0.00 0.00 0.00 4.96
3569 10497 2.812358 AATTTTCTGCAACGTTCCCC 57.188 45.000 0.00 0.00 0.00 4.81
3570 10498 6.779115 ATTTTAATTTTCTGCAACGTTCCC 57.221 33.333 0.00 0.00 0.00 3.97
3571 10499 9.497030 AAAAATTTTAATTTTCTGCAACGTTCC 57.503 25.926 12.19 0.00 45.16 3.62
3573 10501 9.497030 GGAAAAATTTTAATTTTCTGCAACGTT 57.503 25.926 12.19 0.00 45.16 3.99
3574 10502 8.888716 AGGAAAAATTTTAATTTTCTGCAACGT 58.111 25.926 12.19 0.00 45.16 3.99
3604 10532 6.352516 ACTCATAGATGGATCTTGGTGAAAC 58.647 40.000 0.00 0.00 38.32 2.78
3605 10533 6.566079 ACTCATAGATGGATCTTGGTGAAA 57.434 37.500 0.00 0.00 38.32 2.69
3606 10534 6.156775 TGAACTCATAGATGGATCTTGGTGAA 59.843 38.462 0.00 0.00 38.32 3.18
3607 10535 5.662657 TGAACTCATAGATGGATCTTGGTGA 59.337 40.000 0.00 0.00 38.32 4.02
3608 10536 5.922053 TGAACTCATAGATGGATCTTGGTG 58.078 41.667 0.00 0.00 38.32 4.17
3609 10537 6.558014 AGATGAACTCATAGATGGATCTTGGT 59.442 38.462 0.00 0.00 38.32 3.67
3610 10538 7.006865 AGATGAACTCATAGATGGATCTTGG 57.993 40.000 0.00 0.00 38.32 3.61
3611 10539 9.642327 CTTAGATGAACTCATAGATGGATCTTG 57.358 37.037 0.00 0.00 38.32 3.02
3612 10540 8.313292 GCTTAGATGAACTCATAGATGGATCTT 58.687 37.037 0.00 0.00 38.32 2.40
3613 10541 7.454066 TGCTTAGATGAACTCATAGATGGATCT 59.546 37.037 0.00 0.00 40.86 2.75
3614 10542 7.609960 TGCTTAGATGAACTCATAGATGGATC 58.390 38.462 0.00 0.00 36.57 3.36
3615 10543 7.550597 TGCTTAGATGAACTCATAGATGGAT 57.449 36.000 0.00 0.00 36.57 3.41
3616 10544 6.983906 TGCTTAGATGAACTCATAGATGGA 57.016 37.500 0.00 0.00 36.57 3.41
3617 10545 6.145209 CGTTGCTTAGATGAACTCATAGATGG 59.855 42.308 0.00 0.00 36.57 3.51
3618 10546 6.920210 TCGTTGCTTAGATGAACTCATAGATG 59.080 38.462 0.00 0.00 36.57 2.90
3619 10547 7.043961 TCGTTGCTTAGATGAACTCATAGAT 57.956 36.000 0.00 0.00 36.57 1.98
3620 10548 6.095580 ACTCGTTGCTTAGATGAACTCATAGA 59.904 38.462 0.00 0.00 36.57 1.98
3621 10549 6.269315 ACTCGTTGCTTAGATGAACTCATAG 58.731 40.000 0.00 0.00 36.57 2.23
3622 10550 6.127730 TGACTCGTTGCTTAGATGAACTCATA 60.128 38.462 0.00 0.00 36.57 2.15
3623 10551 5.078411 ACTCGTTGCTTAGATGAACTCAT 57.922 39.130 0.00 0.00 39.70 2.90
3624 10552 4.022329 TGACTCGTTGCTTAGATGAACTCA 60.022 41.667 0.00 0.00 0.00 3.41
3625 10553 4.486090 TGACTCGTTGCTTAGATGAACTC 58.514 43.478 0.00 0.00 0.00 3.01
3626 10554 4.521130 TGACTCGTTGCTTAGATGAACT 57.479 40.909 0.00 0.00 0.00 3.01
3627 10555 4.092091 CCTTGACTCGTTGCTTAGATGAAC 59.908 45.833 0.00 0.00 0.00 3.18
3628 10556 4.245660 CCTTGACTCGTTGCTTAGATGAA 58.754 43.478 0.00 0.00 0.00 2.57
3629 10557 3.368427 CCCTTGACTCGTTGCTTAGATGA 60.368 47.826 0.00 0.00 0.00 2.92
3630 10558 2.932614 CCCTTGACTCGTTGCTTAGATG 59.067 50.000 0.00 0.00 0.00 2.90
3631 10559 2.832129 TCCCTTGACTCGTTGCTTAGAT 59.168 45.455 0.00 0.00 0.00 1.98
3632 10560 2.231478 CTCCCTTGACTCGTTGCTTAGA 59.769 50.000 0.00 0.00 0.00 2.10
3633 10561 2.028930 ACTCCCTTGACTCGTTGCTTAG 60.029 50.000 0.00 0.00 0.00 2.18
3634 10562 1.968493 ACTCCCTTGACTCGTTGCTTA 59.032 47.619 0.00 0.00 0.00 3.09
3635 10563 0.759346 ACTCCCTTGACTCGTTGCTT 59.241 50.000 0.00 0.00 0.00 3.91
3636 10564 0.034059 CACTCCCTTGACTCGTTGCT 59.966 55.000 0.00 0.00 0.00 3.91
3637 10565 0.033504 TCACTCCCTTGACTCGTTGC 59.966 55.000 0.00 0.00 0.00 4.17
3638 10566 1.341531 ACTCACTCCCTTGACTCGTTG 59.658 52.381 0.00 0.00 0.00 4.10
3639 10567 1.705873 ACTCACTCCCTTGACTCGTT 58.294 50.000 0.00 0.00 0.00 3.85
3640 10568 1.705873 AACTCACTCCCTTGACTCGT 58.294 50.000 0.00 0.00 0.00 4.18
3641 10569 2.408050 CAAACTCACTCCCTTGACTCG 58.592 52.381 0.00 0.00 0.00 4.18
3642 10570 2.147150 GCAAACTCACTCCCTTGACTC 58.853 52.381 0.00 0.00 0.00 3.36
3643 10571 1.490490 TGCAAACTCACTCCCTTGACT 59.510 47.619 0.00 0.00 0.00 3.41
3644 10572 1.967319 TGCAAACTCACTCCCTTGAC 58.033 50.000 0.00 0.00 0.00 3.18
3645 10573 2.373169 AGATGCAAACTCACTCCCTTGA 59.627 45.455 0.00 0.00 0.00 3.02
3646 10574 2.787994 AGATGCAAACTCACTCCCTTG 58.212 47.619 0.00 0.00 0.00 3.61
3647 10575 3.327757 TGTAGATGCAAACTCACTCCCTT 59.672 43.478 0.00 0.00 0.00 3.95
3648 10576 2.906389 TGTAGATGCAAACTCACTCCCT 59.094 45.455 0.00 0.00 0.00 4.20
3649 10577 3.334583 TGTAGATGCAAACTCACTCCC 57.665 47.619 0.00 0.00 0.00 4.30
3650 10578 4.811557 GGTATGTAGATGCAAACTCACTCC 59.188 45.833 0.00 0.00 0.00 3.85
3651 10579 5.292101 GTGGTATGTAGATGCAAACTCACTC 59.708 44.000 0.00 0.00 0.00 3.51
3652 10580 5.046304 AGTGGTATGTAGATGCAAACTCACT 60.046 40.000 0.00 0.00 0.00 3.41
3653 10581 5.178797 AGTGGTATGTAGATGCAAACTCAC 58.821 41.667 0.00 0.00 0.00 3.51
3654 10582 5.420725 AGTGGTATGTAGATGCAAACTCA 57.579 39.130 0.00 0.00 0.00 3.41
3655 10583 5.643777 ACAAGTGGTATGTAGATGCAAACTC 59.356 40.000 0.00 0.00 0.00 3.01
3656 10584 5.560724 ACAAGTGGTATGTAGATGCAAACT 58.439 37.500 0.00 0.00 0.00 2.66
3657 10585 5.880054 ACAAGTGGTATGTAGATGCAAAC 57.120 39.130 0.00 0.00 0.00 2.93
3666 10594 3.628942 ACGCGATCTACAAGTGGTATGTA 59.371 43.478 15.93 0.00 32.27 2.29
3667 10595 2.426024 ACGCGATCTACAAGTGGTATGT 59.574 45.455 15.93 0.00 34.81 2.29
3668 10596 3.079960 ACGCGATCTACAAGTGGTATG 57.920 47.619 15.93 0.00 0.00 2.39
3669 10597 3.303593 CGTACGCGATCTACAAGTGGTAT 60.304 47.826 15.93 0.00 41.33 2.73
3670 10598 2.030823 CGTACGCGATCTACAAGTGGTA 59.969 50.000 15.93 0.00 41.33 3.25
3671 10599 1.202110 CGTACGCGATCTACAAGTGGT 60.202 52.381 15.93 0.00 41.33 4.16
3672 10600 1.463805 CGTACGCGATCTACAAGTGG 58.536 55.000 15.93 0.00 41.33 4.00
3673 10601 1.063027 TCCGTACGCGATCTACAAGTG 59.937 52.381 15.93 0.00 41.33 3.16
3674 10602 1.372582 TCCGTACGCGATCTACAAGT 58.627 50.000 15.93 0.00 41.33 3.16
3675 10603 2.373269 CTTCCGTACGCGATCTACAAG 58.627 52.381 15.93 3.51 41.33 3.16
3676 10604 1.532505 GCTTCCGTACGCGATCTACAA 60.533 52.381 15.93 0.00 41.33 2.41
3677 10605 0.028505 GCTTCCGTACGCGATCTACA 59.971 55.000 15.93 0.00 41.33 2.74
3678 10606 2.780903 GCTTCCGTACGCGATCTAC 58.219 57.895 15.93 3.83 41.33 2.59
3690 10618 1.227002 GCTCCCTCTAACGCTTCCG 60.227 63.158 0.00 0.00 41.14 4.30
3691 10619 1.227002 CGCTCCCTCTAACGCTTCC 60.227 63.158 0.00 0.00 0.00 3.46
3692 10620 1.227002 CCGCTCCCTCTAACGCTTC 60.227 63.158 0.00 0.00 0.00 3.86
3693 10621 1.982938 ACCGCTCCCTCTAACGCTT 60.983 57.895 0.00 0.00 0.00 4.68
3694 10622 2.362632 ACCGCTCCCTCTAACGCT 60.363 61.111 0.00 0.00 0.00 5.07
3695 10623 2.017559 ATCACCGCTCCCTCTAACGC 62.018 60.000 0.00 0.00 0.00 4.84
3696 10624 0.249073 CATCACCGCTCCCTCTAACG 60.249 60.000 0.00 0.00 0.00 3.18
3697 10625 1.112113 TCATCACCGCTCCCTCTAAC 58.888 55.000 0.00 0.00 0.00 2.34
3698 10626 1.688735 CATCATCACCGCTCCCTCTAA 59.311 52.381 0.00 0.00 0.00 2.10
3699 10627 1.332195 CATCATCACCGCTCCCTCTA 58.668 55.000 0.00 0.00 0.00 2.43
3700 10628 1.406065 CCATCATCACCGCTCCCTCT 61.406 60.000 0.00 0.00 0.00 3.69
3701 10629 1.070445 CCATCATCACCGCTCCCTC 59.930 63.158 0.00 0.00 0.00 4.30
3702 10630 1.383109 TCCATCATCACCGCTCCCT 60.383 57.895 0.00 0.00 0.00 4.20
3703 10631 1.070445 CTCCATCATCACCGCTCCC 59.930 63.158 0.00 0.00 0.00 4.30
3704 10632 0.249657 GACTCCATCATCACCGCTCC 60.250 60.000 0.00 0.00 0.00 4.70
3705 10633 0.596083 CGACTCCATCATCACCGCTC 60.596 60.000 0.00 0.00 0.00 5.03
3706 10634 1.323271 ACGACTCCATCATCACCGCT 61.323 55.000 0.00 0.00 0.00 5.52
3707 10635 0.384309 TACGACTCCATCATCACCGC 59.616 55.000 0.00 0.00 0.00 5.68
3708 10636 1.676529 AGTACGACTCCATCATCACCG 59.323 52.381 0.00 0.00 0.00 4.94
3709 10637 2.287069 CGAGTACGACTCCATCATCACC 60.287 54.545 8.73 0.00 42.12 4.02
3710 10638 2.855187 GCGAGTACGACTCCATCATCAC 60.855 54.545 8.73 0.00 42.12 3.06
3711 10639 1.333931 GCGAGTACGACTCCATCATCA 59.666 52.381 8.73 0.00 42.12 3.07
3712 10640 1.335142 GGCGAGTACGACTCCATCATC 60.335 57.143 8.73 0.00 45.04 2.92
3713 10641 0.669077 GGCGAGTACGACTCCATCAT 59.331 55.000 8.73 0.00 45.04 2.45
3714 10642 1.712018 CGGCGAGTACGACTCCATCA 61.712 60.000 0.00 0.00 46.46 3.07
3715 10643 1.009900 CGGCGAGTACGACTCCATC 60.010 63.158 0.00 1.13 46.46 3.51
3716 10644 1.748122 ACGGCGAGTACGACTCCAT 60.748 57.895 16.62 0.00 46.46 3.41
3717 10645 2.359107 ACGGCGAGTACGACTCCA 60.359 61.111 16.62 0.00 46.46 3.86
3718 10646 1.712977 ATCACGGCGAGTACGACTCC 61.713 60.000 16.62 0.00 46.46 3.85
3719 10647 0.098376 AATCACGGCGAGTACGACTC 59.902 55.000 16.62 0.00 46.46 3.36
3720 10648 0.098376 GAATCACGGCGAGTACGACT 59.902 55.000 16.62 0.00 46.46 4.18
3721 10649 0.179181 TGAATCACGGCGAGTACGAC 60.179 55.000 16.62 0.00 45.02 4.34
3722 10650 0.098200 CTGAATCACGGCGAGTACGA 59.902 55.000 16.62 1.74 42.66 3.43
3723 10651 0.098200 TCTGAATCACGGCGAGTACG 59.902 55.000 16.62 0.00 42.93 3.67
3724 10652 2.223502 TGATCTGAATCACGGCGAGTAC 60.224 50.000 16.62 2.58 36.98 2.73
3725 10653 2.021457 TGATCTGAATCACGGCGAGTA 58.979 47.619 16.62 0.00 36.98 2.59
3726 10654 0.817654 TGATCTGAATCACGGCGAGT 59.182 50.000 16.62 0.00 36.98 4.18
3727 10655 3.648528 TGATCTGAATCACGGCGAG 57.351 52.632 16.62 5.72 36.98 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.