Multiple sequence alignment - TraesCS2B01G098100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G098100 chr2B 100.000 3111 0 0 1 3111 58092901 58089791 0.000000e+00 5746.0
1 TraesCS2B01G098100 chr2B 86.044 1992 135 58 361 2298 58312378 58310476 0.000000e+00 2006.0
2 TraesCS2B01G098100 chr2B 90.636 1463 83 21 756 2193 58536368 58537801 0.000000e+00 1893.0
3 TraesCS2B01G098100 chr2B 85.535 1756 133 48 459 2116 58344007 58345739 0.000000e+00 1724.0
4 TraesCS2B01G098100 chr2B 94.054 1009 48 4 1215 2223 58237226 58236230 0.000000e+00 1520.0
5 TraesCS2B01G098100 chr2B 86.969 353 39 6 3 351 88194818 88194469 1.050000e-104 390.0
6 TraesCS2B01G098100 chr2B 86.351 359 37 5 3 351 610697234 610697590 6.300000e-102 381.0
7 TraesCS2B01G098100 chr2B 86.236 356 35 10 3 350 436532854 436533203 1.050000e-99 374.0
8 TraesCS2B01G098100 chr2B 84.190 253 21 6 1186 1433 57787776 57788014 8.680000e-56 228.0
9 TraesCS2B01G098100 chr2B 81.849 292 25 15 756 1025 58238806 58238521 1.450000e-53 220.0
10 TraesCS2B01G098100 chr2B 87.500 136 17 0 348 483 58548667 58548802 1.150000e-34 158.0
11 TraesCS2B01G098100 chr2A 88.755 1992 126 38 348 2268 38569293 38571257 0.000000e+00 2348.0
12 TraesCS2B01G098100 chr2A 86.209 1994 159 45 348 2271 38517084 38515137 0.000000e+00 2052.0
13 TraesCS2B01G098100 chr2A 91.373 255 19 3 1870 2121 38398170 38397916 2.300000e-91 346.0
14 TraesCS2B01G098100 chr2D 89.569 1879 102 43 449 2249 35242791 35240929 0.000000e+00 2298.0
15 TraesCS2B01G098100 chr2D 89.015 1411 85 30 911 2268 35314970 35316363 0.000000e+00 1683.0
16 TraesCS2B01G098100 chr2D 84.401 359 41 11 3 354 527542848 527543198 3.840000e-89 339.0
17 TraesCS2B01G098100 chr2D 80.054 371 42 12 496 863 35314465 35314806 2.400000e-61 246.0
18 TraesCS2B01G098100 chr5B 87.857 560 38 21 2528 3075 470183270 470182729 5.660000e-177 630.0
19 TraesCS2B01G098100 chr5B 89.548 354 28 4 3 350 572968066 572967716 1.020000e-119 440.0
20 TraesCS2B01G098100 chr3B 87.835 559 39 17 2528 3075 39643924 39644464 2.040000e-176 628.0
21 TraesCS2B01G098100 chr3B 86.969 353 39 6 3 352 564315595 564315247 1.050000e-104 390.0
22 TraesCS2B01G098100 chr3B 87.252 353 31 10 3 348 574710888 574711233 1.050000e-104 390.0
23 TraesCS2B01G098100 chr6B 87.800 541 52 12 2540 3075 693959636 693959105 3.410000e-174 621.0
24 TraesCS2B01G098100 chr6B 87.800 541 52 12 2540 3075 693982822 693982291 3.410000e-174 621.0
25 TraesCS2B01G098100 chr6B 87.616 541 53 12 2540 3075 693954066 693953535 1.590000e-172 616.0
26 TraesCS2B01G098100 chr6B 87.638 542 52 13 2540 3075 693964795 693964263 1.590000e-172 616.0
27 TraesCS2B01G098100 chr6B 87.952 332 34 4 3 331 153548001 153547673 1.350000e-103 387.0
28 TraesCS2B01G098100 chr5D 87.027 555 47 18 2537 3075 407776131 407776676 1.230000e-168 603.0
29 TraesCS2B01G098100 chr7B 86.131 548 51 16 2537 3071 113516381 113516916 4.500000e-158 568.0
30 TraesCS2B01G098100 chr7B 87.853 354 33 4 3 348 324400024 324399673 1.040000e-109 407.0
31 TraesCS2B01G098100 chr1B 85.946 555 49 12 2531 3075 562366421 562365886 1.620000e-157 566.0
32 TraesCS2B01G098100 chr1D 92.973 185 13 0 2285 2469 329671888 329672072 1.420000e-68 270.0
33 TraesCS2B01G098100 chr4D 87.302 63 6 2 1440 1501 300858236 300858175 1.550000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G098100 chr2B 58089791 58092901 3110 True 5746.0 5746 100.0000 1 3111 1 chr2B.!!$R1 3110
1 TraesCS2B01G098100 chr2B 58310476 58312378 1902 True 2006.0 2006 86.0440 361 2298 1 chr2B.!!$R2 1937
2 TraesCS2B01G098100 chr2B 58536368 58537801 1433 False 1893.0 1893 90.6360 756 2193 1 chr2B.!!$F3 1437
3 TraesCS2B01G098100 chr2B 58344007 58345739 1732 False 1724.0 1724 85.5350 459 2116 1 chr2B.!!$F2 1657
4 TraesCS2B01G098100 chr2B 58236230 58238806 2576 True 870.0 1520 87.9515 756 2223 2 chr2B.!!$R4 1467
5 TraesCS2B01G098100 chr2A 38569293 38571257 1964 False 2348.0 2348 88.7550 348 2268 1 chr2A.!!$F1 1920
6 TraesCS2B01G098100 chr2A 38515137 38517084 1947 True 2052.0 2052 86.2090 348 2271 1 chr2A.!!$R2 1923
7 TraesCS2B01G098100 chr2D 35240929 35242791 1862 True 2298.0 2298 89.5690 449 2249 1 chr2D.!!$R1 1800
8 TraesCS2B01G098100 chr2D 35314465 35316363 1898 False 964.5 1683 84.5345 496 2268 2 chr2D.!!$F2 1772
9 TraesCS2B01G098100 chr5B 470182729 470183270 541 True 630.0 630 87.8570 2528 3075 1 chr5B.!!$R1 547
10 TraesCS2B01G098100 chr3B 39643924 39644464 540 False 628.0 628 87.8350 2528 3075 1 chr3B.!!$F1 547
11 TraesCS2B01G098100 chr6B 693959105 693959636 531 True 621.0 621 87.8000 2540 3075 1 chr6B.!!$R3 535
12 TraesCS2B01G098100 chr6B 693982291 693982822 531 True 621.0 621 87.8000 2540 3075 1 chr6B.!!$R5 535
13 TraesCS2B01G098100 chr6B 693953535 693954066 531 True 616.0 616 87.6160 2540 3075 1 chr6B.!!$R2 535
14 TraesCS2B01G098100 chr6B 693964263 693964795 532 True 616.0 616 87.6380 2540 3075 1 chr6B.!!$R4 535
15 TraesCS2B01G098100 chr5D 407776131 407776676 545 False 603.0 603 87.0270 2537 3075 1 chr5D.!!$F1 538
16 TraesCS2B01G098100 chr7B 113516381 113516916 535 False 568.0 568 86.1310 2537 3071 1 chr7B.!!$F1 534
17 TraesCS2B01G098100 chr1B 562365886 562366421 535 True 566.0 566 85.9460 2531 3075 1 chr1B.!!$R1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.038892 GACGACGTTGTCTAGGGCAA 60.039 55.0 25.69 0.00 35.95 4.52 F
508 520 0.039708 GACTGAAACTTGCAGGCTGC 60.040 55.0 31.91 31.91 45.29 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1133 1374 1.545582 GGCAGCAGATTAAGCAAACCA 59.454 47.619 0.0 0.0 0.00 3.67 R
2414 3745 0.108615 CCGTCTGATTCGGCAGTCTT 60.109 55.000 0.0 0.0 41.48 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.194720 GCCGACGCTCATCGACCT 62.195 66.667 3.74 0.00 45.13 3.85
22 23 2.024871 CCGACGCTCATCGACCTC 59.975 66.667 3.74 0.00 45.13 3.85
23 24 2.761195 CCGACGCTCATCGACCTCA 61.761 63.158 3.74 0.00 45.13 3.86
24 25 1.583967 CGACGCTCATCGACCTCAC 60.584 63.158 0.00 0.00 45.13 3.51
25 26 1.803943 GACGCTCATCGACCTCACT 59.196 57.895 0.00 0.00 41.67 3.41
26 27 0.524392 GACGCTCATCGACCTCACTG 60.524 60.000 0.00 0.00 41.67 3.66
27 28 0.960861 ACGCTCATCGACCTCACTGA 60.961 55.000 0.00 0.00 41.67 3.41
28 29 0.524392 CGCTCATCGACCTCACTGAC 60.524 60.000 0.00 0.00 41.67 3.51
29 30 0.179124 GCTCATCGACCTCACTGACC 60.179 60.000 0.00 0.00 0.00 4.02
30 31 0.457851 CTCATCGACCTCACTGACCC 59.542 60.000 0.00 0.00 0.00 4.46
31 32 0.970937 TCATCGACCTCACTGACCCC 60.971 60.000 0.00 0.00 0.00 4.95
32 33 2.052690 ATCGACCTCACTGACCCCG 61.053 63.158 0.00 0.00 0.00 5.73
33 34 2.494777 ATCGACCTCACTGACCCCGA 62.495 60.000 0.00 0.00 0.00 5.14
34 35 2.701780 CGACCTCACTGACCCCGAG 61.702 68.421 0.00 0.00 0.00 4.63
37 38 3.289525 CTCACTGACCCCGAGGAC 58.710 66.667 0.00 0.00 36.73 3.85
38 39 2.675423 TCACTGACCCCGAGGACG 60.675 66.667 0.00 0.00 36.73 4.79
39 40 2.675423 CACTGACCCCGAGGACGA 60.675 66.667 0.00 0.00 42.66 4.20
40 41 2.675772 ACTGACCCCGAGGACGAC 60.676 66.667 0.00 0.00 42.66 4.34
41 42 3.812019 CTGACCCCGAGGACGACG 61.812 72.222 0.00 0.00 42.66 5.12
42 43 4.648626 TGACCCCGAGGACGACGT 62.649 66.667 0.00 0.00 42.66 4.34
43 44 3.368571 GACCCCGAGGACGACGTT 61.369 66.667 0.13 0.00 42.66 3.99
44 45 3.621892 GACCCCGAGGACGACGTTG 62.622 68.421 0.13 0.00 42.66 4.10
45 46 3.677648 CCCCGAGGACGACGTTGT 61.678 66.667 8.55 8.55 42.66 3.32
46 47 2.126580 CCCGAGGACGACGTTGTC 60.127 66.667 25.13 25.13 42.66 3.18
47 48 2.623915 CCCGAGGACGACGTTGTCT 61.624 63.158 30.05 18.59 42.66 3.41
48 49 1.300971 CCCGAGGACGACGTTGTCTA 61.301 60.000 30.05 0.00 42.66 2.59
49 50 0.096628 CCGAGGACGACGTTGTCTAG 59.903 60.000 30.05 21.45 42.66 2.43
50 51 0.096628 CGAGGACGACGTTGTCTAGG 59.903 60.000 30.05 17.56 42.66 3.02
51 52 0.450983 GAGGACGACGTTGTCTAGGG 59.549 60.000 30.05 0.00 38.91 3.53
52 53 1.153881 GGACGACGTTGTCTAGGGC 60.154 63.158 30.05 13.37 38.91 5.19
53 54 1.582968 GACGACGTTGTCTAGGGCA 59.417 57.895 25.69 0.00 35.95 5.36
54 55 0.038892 GACGACGTTGTCTAGGGCAA 60.039 55.000 25.69 0.00 35.95 4.52
55 56 0.319297 ACGACGTTGTCTAGGGCAAC 60.319 55.000 1.48 16.13 41.81 4.17
58 59 4.371975 GTTGTCTAGGGCAACGCA 57.628 55.556 12.79 0.00 37.15 5.24
59 60 1.866925 GTTGTCTAGGGCAACGCAC 59.133 57.895 12.79 0.00 37.15 5.34
60 61 1.302192 TTGTCTAGGGCAACGCACC 60.302 57.895 0.00 0.00 28.43 5.01
61 62 2.813908 GTCTAGGGCAACGCACCG 60.814 66.667 0.00 0.00 28.43 4.94
62 63 2.992689 TCTAGGGCAACGCACCGA 60.993 61.111 0.00 0.00 28.43 4.69
63 64 2.813908 CTAGGGCAACGCACCGAC 60.814 66.667 0.00 0.00 28.43 4.79
64 65 4.728102 TAGGGCAACGCACCGACG 62.728 66.667 0.00 0.00 39.50 5.12
69 70 3.179265 CAACGCACCGACGCCTAG 61.179 66.667 0.00 0.00 36.19 3.02
70 71 3.677648 AACGCACCGACGCCTAGT 61.678 61.111 0.00 0.00 36.19 2.57
71 72 3.216944 AACGCACCGACGCCTAGTT 62.217 57.895 0.00 0.00 36.19 2.24
72 73 2.431942 CGCACCGACGCCTAGTTT 60.432 61.111 0.00 0.00 0.00 2.66
73 74 2.025418 CGCACCGACGCCTAGTTTT 61.025 57.895 0.00 0.00 0.00 2.43
74 75 1.562575 CGCACCGACGCCTAGTTTTT 61.563 55.000 0.00 0.00 0.00 1.94
75 76 1.431496 GCACCGACGCCTAGTTTTTA 58.569 50.000 0.00 0.00 0.00 1.52
76 77 1.392510 GCACCGACGCCTAGTTTTTAG 59.607 52.381 0.00 0.00 0.00 1.85
77 78 2.680577 CACCGACGCCTAGTTTTTAGT 58.319 47.619 0.00 0.00 0.00 2.24
78 79 3.062042 CACCGACGCCTAGTTTTTAGTT 58.938 45.455 0.00 0.00 0.00 2.24
79 80 3.495753 CACCGACGCCTAGTTTTTAGTTT 59.504 43.478 0.00 0.00 0.00 2.66
80 81 3.495753 ACCGACGCCTAGTTTTTAGTTTG 59.504 43.478 0.00 0.00 0.00 2.93
81 82 3.495753 CCGACGCCTAGTTTTTAGTTTGT 59.504 43.478 0.00 0.00 0.00 2.83
82 83 4.024641 CCGACGCCTAGTTTTTAGTTTGTT 60.025 41.667 0.00 0.00 0.00 2.83
83 84 5.504392 CGACGCCTAGTTTTTAGTTTGTTT 58.496 37.500 0.00 0.00 0.00 2.83
84 85 5.967088 CGACGCCTAGTTTTTAGTTTGTTTT 59.033 36.000 0.00 0.00 0.00 2.43
85 86 6.469915 CGACGCCTAGTTTTTAGTTTGTTTTT 59.530 34.615 0.00 0.00 0.00 1.94
86 87 7.639461 CGACGCCTAGTTTTTAGTTTGTTTTTA 59.361 33.333 0.00 0.00 0.00 1.52
87 88 9.454585 GACGCCTAGTTTTTAGTTTGTTTTTAT 57.545 29.630 0.00 0.00 0.00 1.40
88 89 9.806203 ACGCCTAGTTTTTAGTTTGTTTTTATT 57.194 25.926 0.00 0.00 0.00 1.40
112 113 7.561237 TTTTCTTAAATGCTAATGTGAACGC 57.439 32.000 0.00 0.00 0.00 4.84
113 114 4.892655 TCTTAAATGCTAATGTGAACGCG 58.107 39.130 3.53 3.53 0.00 6.01
114 115 4.390603 TCTTAAATGCTAATGTGAACGCGT 59.609 37.500 5.58 5.58 0.00 6.01
115 116 2.525750 AATGCTAATGTGAACGCGTG 57.474 45.000 14.98 0.00 0.00 5.34
116 117 0.726827 ATGCTAATGTGAACGCGTGG 59.273 50.000 14.98 0.00 0.00 4.94
117 118 0.319986 TGCTAATGTGAACGCGTGGA 60.320 50.000 14.98 0.00 0.00 4.02
118 119 0.094730 GCTAATGTGAACGCGTGGAC 59.905 55.000 14.98 13.55 0.00 4.02
119 120 1.710013 CTAATGTGAACGCGTGGACT 58.290 50.000 14.98 0.00 0.00 3.85
120 121 1.654105 CTAATGTGAACGCGTGGACTC 59.346 52.381 14.98 7.20 0.00 3.36
121 122 0.949105 AATGTGAACGCGTGGACTCC 60.949 55.000 14.98 1.33 0.00 3.85
122 123 2.737376 GTGAACGCGTGGACTCCC 60.737 66.667 14.98 0.00 0.00 4.30
123 124 4.351938 TGAACGCGTGGACTCCCG 62.352 66.667 14.98 0.00 34.29 5.14
145 146 2.359478 CCTACGTGGCCGGCTTTT 60.359 61.111 28.56 10.99 38.78 2.27
146 147 1.078988 CCTACGTGGCCGGCTTTTA 60.079 57.895 28.56 11.58 38.78 1.52
147 148 0.674269 CCTACGTGGCCGGCTTTTAA 60.674 55.000 28.56 8.79 38.78 1.52
148 149 1.375551 CTACGTGGCCGGCTTTTAAT 58.624 50.000 28.56 9.98 38.78 1.40
149 150 1.063469 CTACGTGGCCGGCTTTTAATG 59.937 52.381 28.56 14.30 38.78 1.90
150 151 0.891904 ACGTGGCCGGCTTTTAATGT 60.892 50.000 28.56 14.93 38.78 2.71
151 152 0.242555 CGTGGCCGGCTTTTAATGTT 59.757 50.000 28.56 0.00 0.00 2.71
152 153 1.336424 CGTGGCCGGCTTTTAATGTTT 60.336 47.619 28.56 0.00 0.00 2.83
153 154 2.095161 CGTGGCCGGCTTTTAATGTTTA 60.095 45.455 28.56 0.00 0.00 2.01
154 155 3.612004 CGTGGCCGGCTTTTAATGTTTAA 60.612 43.478 28.56 0.00 0.00 1.52
155 156 4.500127 GTGGCCGGCTTTTAATGTTTAAT 58.500 39.130 28.56 0.00 0.00 1.40
156 157 4.932799 GTGGCCGGCTTTTAATGTTTAATT 59.067 37.500 28.56 0.00 0.00 1.40
157 158 6.100668 GTGGCCGGCTTTTAATGTTTAATTA 58.899 36.000 28.56 0.00 0.00 1.40
158 159 6.590677 GTGGCCGGCTTTTAATGTTTAATTAA 59.409 34.615 28.56 0.00 0.00 1.40
159 160 7.279090 GTGGCCGGCTTTTAATGTTTAATTAAT 59.721 33.333 28.56 0.00 0.00 1.40
160 161 7.824779 TGGCCGGCTTTTAATGTTTAATTAATT 59.175 29.630 28.56 5.89 0.00 1.40
161 162 8.670135 GGCCGGCTTTTAATGTTTAATTAATTT 58.330 29.630 28.56 0.00 0.00 1.82
195 196 8.951787 ATGTTAAATATGCATGCATTCAGTTT 57.048 26.923 36.23 28.35 37.82 2.66
196 197 8.410030 TGTTAAATATGCATGCATTCAGTTTC 57.590 30.769 36.23 20.77 37.82 2.78
197 198 8.252417 TGTTAAATATGCATGCATTCAGTTTCT 58.748 29.630 36.23 13.96 37.82 2.52
198 199 9.090692 GTTAAATATGCATGCATTCAGTTTCTT 57.909 29.630 36.23 18.96 37.82 2.52
199 200 9.656040 TTAAATATGCATGCATTCAGTTTCTTT 57.344 25.926 36.23 21.73 37.82 2.52
200 201 8.556213 AAATATGCATGCATTCAGTTTCTTTT 57.444 26.923 36.23 17.95 37.82 2.27
201 202 8.556213 AATATGCATGCATTCAGTTTCTTTTT 57.444 26.923 36.23 11.99 37.82 1.94
202 203 9.656040 AATATGCATGCATTCAGTTTCTTTTTA 57.344 25.926 36.23 14.86 37.82 1.52
203 204 6.768029 TGCATGCATTCAGTTTCTTTTTAC 57.232 33.333 18.46 0.00 0.00 2.01
204 205 5.401972 TGCATGCATTCAGTTTCTTTTTACG 59.598 36.000 18.46 0.00 0.00 3.18
205 206 5.666185 GCATGCATTCAGTTTCTTTTTACGC 60.666 40.000 14.21 0.00 0.00 4.42
206 207 4.295051 TGCATTCAGTTTCTTTTTACGCC 58.705 39.130 0.00 0.00 0.00 5.68
207 208 3.360758 GCATTCAGTTTCTTTTTACGCCG 59.639 43.478 0.00 0.00 0.00 6.46
208 209 4.533222 CATTCAGTTTCTTTTTACGCCGT 58.467 39.130 0.00 0.00 0.00 5.68
209 210 3.865224 TCAGTTTCTTTTTACGCCGTC 57.135 42.857 0.00 0.00 0.00 4.79
210 211 3.196463 TCAGTTTCTTTTTACGCCGTCA 58.804 40.909 0.00 0.00 0.00 4.35
211 212 3.622163 TCAGTTTCTTTTTACGCCGTCAA 59.378 39.130 0.00 0.00 0.00 3.18
212 213 4.094590 TCAGTTTCTTTTTACGCCGTCAAA 59.905 37.500 0.00 0.00 0.00 2.69
213 214 4.794246 CAGTTTCTTTTTACGCCGTCAAAA 59.206 37.500 8.80 8.80 0.00 2.44
214 215 5.457473 CAGTTTCTTTTTACGCCGTCAAAAT 59.543 36.000 9.48 0.00 0.00 1.82
215 216 5.457473 AGTTTCTTTTTACGCCGTCAAAATG 59.543 36.000 9.48 9.44 0.00 2.32
216 217 3.891324 TCTTTTTACGCCGTCAAAATGG 58.109 40.909 9.48 0.67 34.35 3.16
217 218 2.708386 TTTTACGCCGTCAAAATGGG 57.292 45.000 0.00 0.00 31.56 4.00
218 219 1.606903 TTTACGCCGTCAAAATGGGT 58.393 45.000 0.00 0.00 31.56 4.51
219 220 1.158434 TTACGCCGTCAAAATGGGTC 58.842 50.000 0.00 0.00 31.56 4.46
220 221 1.015085 TACGCCGTCAAAATGGGTCG 61.015 55.000 0.00 0.00 31.56 4.79
221 222 2.178273 GCCGTCAAAATGGGTCGC 59.822 61.111 0.00 0.00 31.56 5.19
222 223 2.478746 CCGTCAAAATGGGTCGCG 59.521 61.111 0.00 0.00 0.00 5.87
223 224 2.202298 CGTCAAAATGGGTCGCGC 60.202 61.111 0.00 0.00 0.00 6.86
224 225 2.178273 GTCAAAATGGGTCGCGCC 59.822 61.111 0.00 6.06 0.00 6.53
225 226 2.281831 TCAAAATGGGTCGCGCCA 60.282 55.556 18.87 14.05 39.65 5.69
226 227 1.899054 TCAAAATGGGTCGCGCCAA 60.899 52.632 18.87 10.10 39.65 4.52
227 228 1.732683 CAAAATGGGTCGCGCCAAC 60.733 57.895 18.87 0.00 39.65 3.77
228 229 3.262142 AAAATGGGTCGCGCCAACG 62.262 57.895 18.87 0.00 44.07 4.10
240 241 4.622456 CCAACGTTGGGTGCACGC 62.622 66.667 35.10 25.75 44.70 5.34
241 242 3.882013 CAACGTTGGGTGCACGCA 61.882 61.111 30.46 30.46 41.53 5.24
242 243 2.904866 AACGTTGGGTGCACGCAT 60.905 55.556 33.62 18.83 41.53 4.73
243 244 2.903547 AACGTTGGGTGCACGCATC 61.904 57.895 33.62 29.75 41.53 3.91
244 245 4.444024 CGTTGGGTGCACGCATCG 62.444 66.667 36.55 36.55 42.49 3.84
245 246 3.047280 GTTGGGTGCACGCATCGA 61.047 61.111 33.62 18.83 38.62 3.59
246 247 3.047280 TTGGGTGCACGCATCGAC 61.047 61.111 33.62 7.93 38.62 4.20
250 251 3.047280 GTGCACGCATCGACCCAA 61.047 61.111 0.00 0.00 0.00 4.12
251 252 2.281139 TGCACGCATCGACCCAAA 60.281 55.556 0.00 0.00 0.00 3.28
252 253 2.175811 GCACGCATCGACCCAAAC 59.824 61.111 0.00 0.00 0.00 2.93
253 254 2.474266 CACGCATCGACCCAAACG 59.526 61.111 0.00 0.00 0.00 3.60
254 255 3.419759 ACGCATCGACCCAAACGC 61.420 61.111 0.00 0.00 0.00 4.84
255 256 4.499023 CGCATCGACCCAAACGCG 62.499 66.667 3.53 3.53 36.47 6.01
256 257 3.115892 GCATCGACCCAAACGCGA 61.116 61.111 15.93 0.00 38.51 5.87
257 258 2.673114 GCATCGACCCAAACGCGAA 61.673 57.895 15.93 0.00 37.60 4.70
258 259 1.863491 CATCGACCCAAACGCGAAA 59.137 52.632 15.93 0.00 37.60 3.46
259 260 0.179225 CATCGACCCAAACGCGAAAG 60.179 55.000 15.93 0.46 37.60 2.62
278 279 4.719369 GGACGCTCGTGTTCGCCT 62.719 66.667 0.00 0.00 36.96 5.52
279 280 3.470567 GACGCTCGTGTTCGCCTG 61.471 66.667 0.00 0.00 36.96 4.85
286 287 3.195698 GTGTTCGCCTGGCCGATC 61.196 66.667 14.12 12.69 37.06 3.69
287 288 4.467084 TGTTCGCCTGGCCGATCC 62.467 66.667 14.12 8.10 37.06 3.36
288 289 4.467084 GTTCGCCTGGCCGATCCA 62.467 66.667 14.12 0.00 44.18 3.41
289 290 3.711814 TTCGCCTGGCCGATCCAA 61.712 61.111 14.12 0.00 46.01 3.53
290 291 3.261039 TTCGCCTGGCCGATCCAAA 62.261 57.895 14.12 0.00 46.01 3.28
291 292 3.508840 CGCCTGGCCGATCCAAAC 61.509 66.667 14.12 0.00 46.01 2.93
292 293 3.508840 GCCTGGCCGATCCAAACG 61.509 66.667 7.66 0.00 46.01 3.60
323 324 3.294079 ACGAAATCACCGTCCGTTT 57.706 47.368 0.00 0.00 34.97 3.60
324 325 0.863144 ACGAAATCACCGTCCGTTTG 59.137 50.000 0.00 0.00 34.97 2.93
325 326 0.165079 CGAAATCACCGTCCGTTTGG 59.835 55.000 0.00 0.00 0.00 3.28
326 327 0.519961 GAAATCACCGTCCGTTTGGG 59.480 55.000 0.00 0.00 35.24 4.12
327 328 0.179012 AAATCACCGTCCGTTTGGGT 60.179 50.000 0.00 0.00 37.00 4.51
328 329 0.604511 AATCACCGTCCGTTTGGGTC 60.605 55.000 0.00 0.00 37.00 4.46
329 330 2.775032 ATCACCGTCCGTTTGGGTCG 62.775 60.000 0.00 0.00 45.31 4.79
341 342 4.419921 GGGTCGGCCCGTTGGAAT 62.420 66.667 10.71 0.00 46.51 3.01
342 343 2.360726 GGTCGGCCCGTTGGAATT 60.361 61.111 1.63 0.00 0.00 2.17
343 344 2.696759 GGTCGGCCCGTTGGAATTG 61.697 63.158 1.63 0.00 0.00 2.32
344 345 3.059386 TCGGCCCGTTGGAATTGC 61.059 61.111 1.63 0.00 0.00 3.56
345 346 3.061848 CGGCCCGTTGGAATTGCT 61.062 61.111 0.00 0.00 0.00 3.91
346 347 2.885113 GGCCCGTTGGAATTGCTC 59.115 61.111 0.00 0.00 0.00 4.26
350 351 1.401905 GCCCGTTGGAATTGCTCTTAG 59.598 52.381 0.00 0.00 0.00 2.18
367 368 2.638330 TAGGATAGCCACGCAACGCC 62.638 60.000 0.00 0.00 36.29 5.68
376 377 0.932585 CACGCAACGCCGAAACAAAT 60.933 50.000 0.00 0.00 0.00 2.32
378 379 1.604612 CGCAACGCCGAAACAAATGG 61.605 55.000 0.00 0.00 0.00 3.16
422 428 3.054361 CCCCATACTACCTTGCTTGTTCT 60.054 47.826 0.00 0.00 0.00 3.01
456 462 4.403734 TCCCAGAGGTTTTTAATGTGGAC 58.596 43.478 0.00 0.00 0.00 4.02
465 471 3.788227 TTTAATGTGGACCTCTGCTGT 57.212 42.857 0.00 0.00 0.00 4.40
483 489 7.611770 TCTGCTGTGAAGTTTATGTATAGTGT 58.388 34.615 0.00 0.00 0.00 3.55
484 490 7.545615 TCTGCTGTGAAGTTTATGTATAGTGTG 59.454 37.037 0.00 0.00 0.00 3.82
485 491 6.092122 TGCTGTGAAGTTTATGTATAGTGTGC 59.908 38.462 0.00 0.00 0.00 4.57
486 492 6.092122 GCTGTGAAGTTTATGTATAGTGTGCA 59.908 38.462 0.00 0.00 0.00 4.57
490 496 8.664798 GTGAAGTTTATGTATAGTGTGCAATGA 58.335 33.333 0.00 0.00 0.00 2.57
508 520 0.039708 GACTGAAACTTGCAGGCTGC 60.040 55.000 31.91 31.91 45.29 5.25
560 574 6.288941 ACTGATGGATGCATTCATTTCAAA 57.711 33.333 21.57 5.25 31.96 2.69
689 717 3.655777 AGTTGGGAAGGTATGGAACTGAA 59.344 43.478 0.00 0.00 0.00 3.02
690 718 4.105697 AGTTGGGAAGGTATGGAACTGAAA 59.894 41.667 0.00 0.00 0.00 2.69
718 746 3.812053 TCTTCTTTCAGCAACTCTCAAGC 59.188 43.478 0.00 0.00 0.00 4.01
772 816 2.822561 TGGCTTTAATCGCATTCAACCA 59.177 40.909 0.53 0.00 0.00 3.67
855 899 1.132453 GCCCGGAAGTAACTGCATTTC 59.868 52.381 0.73 0.00 0.00 2.17
963 1136 4.560311 CGAGATGATATGAGAGTGGGTTGG 60.560 50.000 0.00 0.00 0.00 3.77
1086 1317 0.811281 CCCTTCCTTCATTTCCGTGC 59.189 55.000 0.00 0.00 0.00 5.34
1200 1467 2.741092 GAGTGGCGGTGGTCTGAA 59.259 61.111 0.00 0.00 0.00 3.02
1364 2683 3.385384 CGCTGCTCCTGGAGACCA 61.385 66.667 27.53 14.96 33.10 4.02
1367 2686 2.061220 CTGCTCCTGGAGACCAACA 58.939 57.895 27.53 13.55 33.10 3.33
1374 2693 2.358737 GGAGACCAACACCGCCAG 60.359 66.667 0.00 0.00 0.00 4.85
1648 2967 4.961511 GTGTCGGCGGTGCTGTCA 62.962 66.667 7.21 0.00 36.18 3.58
1649 2968 4.228567 TGTCGGCGGTGCTGTCAA 62.229 61.111 7.21 0.00 36.18 3.18
2086 3405 1.036092 AGGGGGAGGTTAGGAAGGAT 58.964 55.000 0.00 0.00 0.00 3.24
2220 3551 0.905357 CGGAAGTGATGAAGGGACCT 59.095 55.000 0.00 0.00 0.00 3.85
2221 3552 1.406069 CGGAAGTGATGAAGGGACCTG 60.406 57.143 0.00 0.00 0.00 4.00
2222 3553 1.680249 GGAAGTGATGAAGGGACCTGC 60.680 57.143 0.00 0.00 0.00 4.85
2280 3611 7.849322 TGTATGAGCATGAATACCTTACCTA 57.151 36.000 0.00 0.00 0.00 3.08
2282 3613 5.196341 TGAGCATGAATACCTTACCTACG 57.804 43.478 0.00 0.00 0.00 3.51
2298 3629 0.392706 TACGTGCTATGCTGATGGGG 59.607 55.000 0.00 0.00 0.00 4.96
2299 3630 1.337384 ACGTGCTATGCTGATGGGGA 61.337 55.000 0.00 0.00 0.00 4.81
2300 3631 0.882042 CGTGCTATGCTGATGGGGAC 60.882 60.000 0.00 0.00 0.00 4.46
2313 3644 2.754648 GGGGACCGGCTATATGTCA 58.245 57.895 0.00 0.00 40.86 3.58
2314 3645 1.053424 GGGGACCGGCTATATGTCAA 58.947 55.000 0.00 0.00 40.86 3.18
2315 3646 1.628846 GGGGACCGGCTATATGTCAAT 59.371 52.381 0.00 0.00 40.86 2.57
2316 3647 2.354805 GGGGACCGGCTATATGTCAATC 60.355 54.545 0.00 0.00 40.86 2.67
2317 3648 2.607187 GGACCGGCTATATGTCAATCG 58.393 52.381 0.00 0.00 0.00 3.34
2318 3649 2.230508 GGACCGGCTATATGTCAATCGA 59.769 50.000 0.00 0.00 0.00 3.59
2319 3650 3.243336 GACCGGCTATATGTCAATCGAC 58.757 50.000 0.00 0.00 42.93 4.20
2320 3651 2.891580 ACCGGCTATATGTCAATCGACT 59.108 45.455 0.00 0.00 43.06 4.18
2321 3652 3.245797 CCGGCTATATGTCAATCGACTG 58.754 50.000 0.00 0.00 43.06 3.51
2322 3653 3.057526 CCGGCTATATGTCAATCGACTGA 60.058 47.826 0.00 0.00 43.06 3.41
2323 3654 4.546570 CGGCTATATGTCAATCGACTGAA 58.453 43.478 0.00 0.00 43.06 3.02
2324 3655 5.164233 CGGCTATATGTCAATCGACTGAAT 58.836 41.667 0.00 0.00 43.06 2.57
2325 3656 5.635280 CGGCTATATGTCAATCGACTGAATT 59.365 40.000 0.00 0.00 43.06 2.17
2326 3657 6.183360 CGGCTATATGTCAATCGACTGAATTC 60.183 42.308 0.00 0.00 43.06 2.17
2327 3658 6.870965 GGCTATATGTCAATCGACTGAATTCT 59.129 38.462 0.00 0.00 43.06 2.40
2328 3659 7.386299 GGCTATATGTCAATCGACTGAATTCTT 59.614 37.037 0.00 0.00 43.06 2.52
2329 3660 9.411801 GCTATATGTCAATCGACTGAATTCTTA 57.588 33.333 0.00 0.00 43.06 2.10
2335 3666 9.098355 TGTCAATCGACTGAATTCTTATTTAGG 57.902 33.333 0.00 0.00 43.06 2.69
2336 3667 8.552034 GTCAATCGACTGAATTCTTATTTAGGG 58.448 37.037 0.00 0.00 39.22 3.53
2337 3668 8.265055 TCAATCGACTGAATTCTTATTTAGGGT 58.735 33.333 7.05 0.00 33.02 4.34
2338 3669 8.552034 CAATCGACTGAATTCTTATTTAGGGTC 58.448 37.037 7.05 0.00 33.02 4.46
2339 3670 7.177832 TCGACTGAATTCTTATTTAGGGTCA 57.822 36.000 7.05 0.00 33.02 4.02
2340 3671 7.265673 TCGACTGAATTCTTATTTAGGGTCAG 58.734 38.462 7.05 0.00 33.02 3.51
2341 3672 7.042335 CGACTGAATTCTTATTTAGGGTCAGT 58.958 38.462 7.05 2.81 37.41 3.41
2342 3673 7.222999 CGACTGAATTCTTATTTAGGGTCAGTC 59.777 40.741 16.67 16.67 43.74 3.51
2343 3674 7.918076 ACTGAATTCTTATTTAGGGTCAGTCA 58.082 34.615 7.05 0.00 33.02 3.41
2344 3675 7.824779 ACTGAATTCTTATTTAGGGTCAGTCAC 59.175 37.037 7.05 0.00 33.02 3.67
2345 3676 7.918076 TGAATTCTTATTTAGGGTCAGTCACT 58.082 34.615 7.05 0.00 0.00 3.41
2346 3677 8.383175 TGAATTCTTATTTAGGGTCAGTCACTT 58.617 33.333 7.05 0.00 0.00 3.16
2347 3678 9.232473 GAATTCTTATTTAGGGTCAGTCACTTT 57.768 33.333 0.00 0.00 0.00 2.66
2348 3679 7.979444 TTCTTATTTAGGGTCAGTCACTTTG 57.021 36.000 0.00 0.00 0.00 2.77
2349 3680 7.074653 TCTTATTTAGGGTCAGTCACTTTGT 57.925 36.000 0.00 0.00 0.00 2.83
2350 3681 7.159372 TCTTATTTAGGGTCAGTCACTTTGTC 58.841 38.462 0.00 0.00 0.00 3.18
2351 3682 5.568620 ATTTAGGGTCAGTCACTTTGTCT 57.431 39.130 0.00 0.00 0.00 3.41
2352 3683 5.367945 TTTAGGGTCAGTCACTTTGTCTT 57.632 39.130 0.00 0.00 0.00 3.01
2353 3684 6.488769 TTTAGGGTCAGTCACTTTGTCTTA 57.511 37.500 0.00 0.00 0.00 2.10
2354 3685 4.608948 AGGGTCAGTCACTTTGTCTTAG 57.391 45.455 0.00 0.00 0.00 2.18
2355 3686 3.067833 GGGTCAGTCACTTTGTCTTAGC 58.932 50.000 0.00 0.00 0.00 3.09
2356 3687 3.494398 GGGTCAGTCACTTTGTCTTAGCA 60.494 47.826 0.00 0.00 0.00 3.49
2357 3688 4.127171 GGTCAGTCACTTTGTCTTAGCAA 58.873 43.478 0.00 0.00 0.00 3.91
2358 3689 4.574828 GGTCAGTCACTTTGTCTTAGCAAA 59.425 41.667 0.00 2.90 36.93 3.68
2368 3699 7.559590 CTTTGTCTTAGCAAAGCATATAGGT 57.440 36.000 13.15 0.00 45.57 3.08
2369 3700 7.553881 TTTGTCTTAGCAAAGCATATAGGTC 57.446 36.000 0.00 0.00 33.91 3.85
2370 3701 6.233905 TGTCTTAGCAAAGCATATAGGTCA 57.766 37.500 0.00 0.00 32.36 4.02
2371 3702 6.049149 TGTCTTAGCAAAGCATATAGGTCAC 58.951 40.000 0.00 0.00 32.36 3.67
2372 3703 5.175856 GTCTTAGCAAAGCATATAGGTCACG 59.824 44.000 0.00 0.00 32.36 4.35
2373 3704 3.819564 AGCAAAGCATATAGGTCACGA 57.180 42.857 0.00 0.00 0.00 4.35
2374 3705 3.458189 AGCAAAGCATATAGGTCACGAC 58.542 45.455 0.00 0.00 0.00 4.34
2375 3706 9.760992 TCTTAGCAAAGCATATAGGTCACGACC 62.761 44.444 8.23 8.23 40.98 4.79
2383 3714 2.741092 GGTCACGACCCAGCTTCA 59.259 61.111 4.78 0.00 45.68 3.02
2384 3715 1.296715 GGTCACGACCCAGCTTCAT 59.703 57.895 4.78 0.00 45.68 2.57
2385 3716 0.535335 GGTCACGACCCAGCTTCATA 59.465 55.000 4.78 0.00 45.68 2.15
2386 3717 1.139058 GGTCACGACCCAGCTTCATAT 59.861 52.381 4.78 0.00 45.68 1.78
2387 3718 2.420129 GGTCACGACCCAGCTTCATATT 60.420 50.000 4.78 0.00 45.68 1.28
2388 3719 3.181469 GGTCACGACCCAGCTTCATATTA 60.181 47.826 4.78 0.00 45.68 0.98
2389 3720 3.802685 GTCACGACCCAGCTTCATATTAC 59.197 47.826 0.00 0.00 0.00 1.89
2390 3721 3.704566 TCACGACCCAGCTTCATATTACT 59.295 43.478 0.00 0.00 0.00 2.24
2391 3722 4.051922 CACGACCCAGCTTCATATTACTC 58.948 47.826 0.00 0.00 0.00 2.59
2392 3723 3.069729 ACGACCCAGCTTCATATTACTCC 59.930 47.826 0.00 0.00 0.00 3.85
2393 3724 3.322254 CGACCCAGCTTCATATTACTCCT 59.678 47.826 0.00 0.00 0.00 3.69
2394 3725 4.523173 CGACCCAGCTTCATATTACTCCTA 59.477 45.833 0.00 0.00 0.00 2.94
2395 3726 5.336055 CGACCCAGCTTCATATTACTCCTAG 60.336 48.000 0.00 0.00 0.00 3.02
2396 3727 5.468658 ACCCAGCTTCATATTACTCCTAGT 58.531 41.667 0.00 0.00 0.00 2.57
2397 3728 5.540719 ACCCAGCTTCATATTACTCCTAGTC 59.459 44.000 0.00 0.00 0.00 2.59
2398 3729 5.777732 CCCAGCTTCATATTACTCCTAGTCT 59.222 44.000 0.00 0.00 0.00 3.24
2399 3730 6.071616 CCCAGCTTCATATTACTCCTAGTCTC 60.072 46.154 0.00 0.00 0.00 3.36
2400 3731 6.719370 CCAGCTTCATATTACTCCTAGTCTCT 59.281 42.308 0.00 0.00 0.00 3.10
2401 3732 7.232534 CCAGCTTCATATTACTCCTAGTCTCTT 59.767 40.741 0.00 0.00 0.00 2.85
2402 3733 8.296713 CAGCTTCATATTACTCCTAGTCTCTTC 58.703 40.741 0.00 0.00 0.00 2.87
2403 3734 8.224720 AGCTTCATATTACTCCTAGTCTCTTCT 58.775 37.037 0.00 0.00 0.00 2.85
2404 3735 8.296713 GCTTCATATTACTCCTAGTCTCTTCTG 58.703 40.741 0.00 0.00 0.00 3.02
2405 3736 9.567776 CTTCATATTACTCCTAGTCTCTTCTGA 57.432 37.037 0.00 0.00 0.00 3.27
2406 3737 9.922477 TTCATATTACTCCTAGTCTCTTCTGAA 57.078 33.333 0.00 0.00 0.00 3.02
2421 3752 9.980780 GTCTCTTCTGAATTTAATTAAGACTGC 57.019 33.333 4.31 0.00 29.37 4.40
2422 3753 9.167311 TCTCTTCTGAATTTAATTAAGACTGCC 57.833 33.333 4.31 0.00 29.37 4.85
2423 3754 7.974675 TCTTCTGAATTTAATTAAGACTGCCG 58.025 34.615 4.31 0.00 29.37 5.69
2424 3755 7.822334 TCTTCTGAATTTAATTAAGACTGCCGA 59.178 33.333 4.31 0.00 29.37 5.54
2425 3756 7.915293 TCTGAATTTAATTAAGACTGCCGAA 57.085 32.000 0.74 0.00 0.00 4.30
2426 3757 8.506168 TCTGAATTTAATTAAGACTGCCGAAT 57.494 30.769 0.74 0.00 0.00 3.34
2427 3758 8.612619 TCTGAATTTAATTAAGACTGCCGAATC 58.387 33.333 0.74 0.00 0.00 2.52
2428 3759 8.275015 TGAATTTAATTAAGACTGCCGAATCA 57.725 30.769 0.00 0.00 0.00 2.57
2429 3760 8.397906 TGAATTTAATTAAGACTGCCGAATCAG 58.602 33.333 0.00 0.00 39.86 2.90
2430 3761 8.506168 AATTTAATTAAGACTGCCGAATCAGA 57.494 30.769 0.00 0.00 37.51 3.27
2431 3762 6.903883 TTAATTAAGACTGCCGAATCAGAC 57.096 37.500 0.00 1.29 37.51 3.51
2432 3763 2.561733 TAAGACTGCCGAATCAGACG 57.438 50.000 6.35 0.00 37.51 4.18
2438 3769 4.201951 CCGAATCAGACGGGTTGG 57.798 61.111 0.00 0.00 45.65 3.77
2439 3770 1.295423 CCGAATCAGACGGGTTGGT 59.705 57.895 0.00 0.00 45.65 3.67
2440 3771 1.019278 CCGAATCAGACGGGTTGGTG 61.019 60.000 0.00 0.00 45.65 4.17
2441 3772 0.320421 CGAATCAGACGGGTTGGTGT 60.320 55.000 0.00 0.00 0.00 4.16
2442 3773 1.156736 GAATCAGACGGGTTGGTGTG 58.843 55.000 0.00 0.00 32.85 3.82
2443 3774 0.889186 AATCAGACGGGTTGGTGTGC 60.889 55.000 0.00 0.00 31.73 4.57
2444 3775 1.768684 ATCAGACGGGTTGGTGTGCT 61.769 55.000 0.00 0.00 31.73 4.40
2445 3776 1.116536 TCAGACGGGTTGGTGTGCTA 61.117 55.000 0.00 0.00 31.73 3.49
2446 3777 0.670546 CAGACGGGTTGGTGTGCTAG 60.671 60.000 0.00 0.00 0.00 3.42
2447 3778 1.119574 AGACGGGTTGGTGTGCTAGT 61.120 55.000 0.00 0.00 0.00 2.57
2448 3779 0.250166 GACGGGTTGGTGTGCTAGTT 60.250 55.000 0.00 0.00 0.00 2.24
2449 3780 0.181824 ACGGGTTGGTGTGCTAGTTT 59.818 50.000 0.00 0.00 0.00 2.66
2450 3781 0.872388 CGGGTTGGTGTGCTAGTTTC 59.128 55.000 0.00 0.00 0.00 2.78
2451 3782 1.542547 CGGGTTGGTGTGCTAGTTTCT 60.543 52.381 0.00 0.00 0.00 2.52
2452 3783 2.152016 GGGTTGGTGTGCTAGTTTCTC 58.848 52.381 0.00 0.00 0.00 2.87
2453 3784 2.486548 GGGTTGGTGTGCTAGTTTCTCA 60.487 50.000 0.00 0.00 0.00 3.27
2454 3785 2.548480 GGTTGGTGTGCTAGTTTCTCAC 59.452 50.000 0.00 0.00 0.00 3.51
2455 3786 3.467803 GTTGGTGTGCTAGTTTCTCACT 58.532 45.455 0.00 0.00 39.87 3.41
2456 3787 3.838244 TGGTGTGCTAGTTTCTCACTT 57.162 42.857 0.00 0.00 36.88 3.16
2457 3788 3.466836 TGGTGTGCTAGTTTCTCACTTG 58.533 45.455 0.00 0.00 36.88 3.16
2458 3789 2.808543 GGTGTGCTAGTTTCTCACTTGG 59.191 50.000 0.00 0.00 36.88 3.61
2459 3790 2.224314 GTGTGCTAGTTTCTCACTTGGC 59.776 50.000 0.00 0.00 36.88 4.52
2460 3791 2.158827 TGTGCTAGTTTCTCACTTGGCA 60.159 45.455 0.00 0.00 39.30 4.92
2461 3792 2.878406 GTGCTAGTTTCTCACTTGGCAA 59.122 45.455 0.00 0.00 41.54 4.52
2462 3793 3.058639 GTGCTAGTTTCTCACTTGGCAAG 60.059 47.826 25.06 25.06 41.54 4.01
2463 3794 2.095516 GCTAGTTTCTCACTTGGCAAGC 60.096 50.000 26.45 8.78 36.88 4.01
2464 3795 2.355010 AGTTTCTCACTTGGCAAGCT 57.645 45.000 26.45 10.97 27.32 3.74
2465 3796 3.492102 AGTTTCTCACTTGGCAAGCTA 57.508 42.857 26.45 13.85 27.32 3.32
2466 3797 3.142174 AGTTTCTCACTTGGCAAGCTAC 58.858 45.455 26.45 14.50 27.32 3.58
2467 3798 3.142174 GTTTCTCACTTGGCAAGCTACT 58.858 45.455 26.45 4.61 0.00 2.57
2468 3799 4.040461 AGTTTCTCACTTGGCAAGCTACTA 59.960 41.667 26.45 7.44 27.32 1.82
2469 3800 3.876274 TCTCACTTGGCAAGCTACTAG 57.124 47.619 26.45 15.72 0.00 2.57
2470 3801 2.497675 TCTCACTTGGCAAGCTACTAGG 59.502 50.000 26.45 10.15 0.00 3.02
2471 3802 2.234908 CTCACTTGGCAAGCTACTAGGT 59.765 50.000 26.45 2.78 0.00 3.08
2472 3803 3.437213 TCACTTGGCAAGCTACTAGGTA 58.563 45.455 26.45 0.00 0.00 3.08
2473 3804 3.447586 TCACTTGGCAAGCTACTAGGTAG 59.552 47.826 26.45 0.00 38.97 3.18
2474 3805 2.766828 ACTTGGCAAGCTACTAGGTAGG 59.233 50.000 26.45 0.00 36.71 3.18
2475 3806 2.840640 TGGCAAGCTACTAGGTAGGA 57.159 50.000 6.81 0.00 36.71 2.94
2476 3807 2.667470 TGGCAAGCTACTAGGTAGGAG 58.333 52.381 6.81 0.00 36.71 3.69
2485 3816 5.662674 CTACTAGGTAGGAGCAAACAAGT 57.337 43.478 0.00 0.00 32.98 3.16
2486 3817 6.770746 CTACTAGGTAGGAGCAAACAAGTA 57.229 41.667 0.00 0.00 32.98 2.24
2487 3818 5.402997 ACTAGGTAGGAGCAAACAAGTAC 57.597 43.478 0.00 0.00 0.00 2.73
2488 3819 5.085219 ACTAGGTAGGAGCAAACAAGTACT 58.915 41.667 0.00 0.00 0.00 2.73
2489 3820 6.251471 ACTAGGTAGGAGCAAACAAGTACTA 58.749 40.000 0.00 0.00 0.00 1.82
2490 3821 5.402997 AGGTAGGAGCAAACAAGTACTAC 57.597 43.478 0.00 0.00 0.00 2.73
2491 3822 5.085219 AGGTAGGAGCAAACAAGTACTACT 58.915 41.667 0.00 0.00 32.24 2.57
2492 3823 6.251471 AGGTAGGAGCAAACAAGTACTACTA 58.749 40.000 0.00 0.00 32.24 1.82
2493 3824 6.377712 AGGTAGGAGCAAACAAGTACTACTAG 59.622 42.308 0.00 0.00 32.24 2.57
2494 3825 6.152492 GGTAGGAGCAAACAAGTACTACTAGT 59.848 42.308 0.00 0.00 32.24 2.57
2495 3826 7.337942 GGTAGGAGCAAACAAGTACTACTAGTA 59.662 40.741 1.89 1.89 32.24 1.82
2548 3879 1.474498 GGCCCGTGTATTACCCTTGAG 60.474 57.143 0.00 0.00 0.00 3.02
2781 4120 9.909644 GGAAGAATAAAACCCTTTAAGAAGAAC 57.090 33.333 0.00 0.00 34.71 3.01
2849 4188 9.586435 GAAGATTGAAACCTTTTGAGAAGAAAA 57.414 29.630 0.00 0.00 0.00 2.29
2906 4247 6.889198 TGAGTTATCGAGGGAAGAATGAAAT 58.111 36.000 0.00 0.00 0.00 2.17
2988 4336 9.599866 AAGAATGAAACCCTTTAAGAAACAAAG 57.400 29.630 0.00 0.00 33.62 2.77
3093 4441 9.469807 AAAACAAAGTTTTGGGAAAATGAAAAC 57.530 25.926 7.03 0.00 42.34 2.43
3094 4442 7.151999 ACAAAGTTTTGGGAAAATGAAAACC 57.848 32.000 9.22 0.00 42.34 3.27
3095 4443 6.945435 ACAAAGTTTTGGGAAAATGAAAACCT 59.055 30.769 9.22 0.00 42.34 3.50
3096 4444 7.450014 ACAAAGTTTTGGGAAAATGAAAACCTT 59.550 29.630 9.22 0.00 42.34 3.50
3097 4445 8.303156 CAAAGTTTTGGGAAAATGAAAACCTTT 58.697 29.630 0.00 0.00 39.40 3.11
3098 4446 9.521841 AAAGTTTTGGGAAAATGAAAACCTTTA 57.478 25.926 0.00 0.00 39.40 1.85
3099 4447 9.521841 AAGTTTTGGGAAAATGAAAACCTTTAA 57.478 25.926 0.00 0.00 39.40 1.52
3100 4448 9.173021 AGTTTTGGGAAAATGAAAACCTTTAAG 57.827 29.630 0.00 0.00 39.40 1.85
3101 4449 9.168451 GTTTTGGGAAAATGAAAACCTTTAAGA 57.832 29.630 0.00 0.00 34.77 2.10
3102 4450 9.740710 TTTTGGGAAAATGAAAACCTTTAAGAA 57.259 25.926 0.00 0.00 0.00 2.52
3103 4451 8.956533 TTGGGAAAATGAAAACCTTTAAGAAG 57.043 30.769 0.00 0.00 0.00 2.85
3104 4452 8.312669 TGGGAAAATGAAAACCTTTAAGAAGA 57.687 30.769 0.00 0.00 34.71 2.87
3105 4453 8.763601 TGGGAAAATGAAAACCTTTAAGAAGAA 58.236 29.630 0.00 0.00 34.71 2.52
3106 4454 9.607988 GGGAAAATGAAAACCTTTAAGAAGAAA 57.392 29.630 0.00 0.00 34.71 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.194720 AGGTCGATGAGCGTCGGC 62.195 66.667 11.67 9.94 44.95 5.54
5 6 2.024871 GAGGTCGATGAGCGTCGG 59.975 66.667 11.67 0.00 41.74 4.79
6 7 1.583967 GTGAGGTCGATGAGCGTCG 60.584 63.158 5.78 5.78 42.74 5.12
7 8 0.524392 CAGTGAGGTCGATGAGCGTC 60.524 60.000 0.00 0.00 41.80 5.19
8 9 0.960861 TCAGTGAGGTCGATGAGCGT 60.961 55.000 0.00 0.00 41.80 5.07
9 10 0.524392 GTCAGTGAGGTCGATGAGCG 60.524 60.000 0.00 0.00 42.69 5.03
10 11 0.179124 GGTCAGTGAGGTCGATGAGC 60.179 60.000 0.00 0.00 33.59 4.26
11 12 0.457851 GGGTCAGTGAGGTCGATGAG 59.542 60.000 0.00 0.00 0.00 2.90
12 13 0.970937 GGGGTCAGTGAGGTCGATGA 60.971 60.000 0.00 0.00 0.00 2.92
13 14 1.517832 GGGGTCAGTGAGGTCGATG 59.482 63.158 0.00 0.00 0.00 3.84
14 15 2.052690 CGGGGTCAGTGAGGTCGAT 61.053 63.158 0.00 0.00 0.00 3.59
15 16 2.675423 CGGGGTCAGTGAGGTCGA 60.675 66.667 0.00 0.00 0.00 4.20
16 17 2.675423 TCGGGGTCAGTGAGGTCG 60.675 66.667 0.00 0.00 0.00 4.79
17 18 2.352032 CCTCGGGGTCAGTGAGGTC 61.352 68.421 0.00 0.00 43.48 3.85
18 19 2.283966 CCTCGGGGTCAGTGAGGT 60.284 66.667 0.00 0.00 43.48 3.85
20 21 2.701780 CGTCCTCGGGGTCAGTGAG 61.702 68.421 0.00 0.00 0.00 3.51
21 22 2.675423 CGTCCTCGGGGTCAGTGA 60.675 66.667 0.00 0.00 0.00 3.41
22 23 2.675423 TCGTCCTCGGGGTCAGTG 60.675 66.667 0.00 0.00 37.69 3.66
23 24 2.675772 GTCGTCCTCGGGGTCAGT 60.676 66.667 0.00 0.00 37.69 3.41
24 25 3.812019 CGTCGTCCTCGGGGTCAG 61.812 72.222 0.00 0.00 37.69 3.51
25 26 4.648626 ACGTCGTCCTCGGGGTCA 62.649 66.667 0.00 0.00 37.69 4.02
26 27 3.368571 AACGTCGTCCTCGGGGTC 61.369 66.667 0.00 0.00 37.69 4.46
27 28 3.677648 CAACGTCGTCCTCGGGGT 61.678 66.667 0.00 0.00 37.69 4.95
28 29 3.621892 GACAACGTCGTCCTCGGGG 62.622 68.421 0.00 0.00 37.69 5.73
29 30 1.300971 TAGACAACGTCGTCCTCGGG 61.301 60.000 2.29 0.00 37.67 5.14
30 31 0.096628 CTAGACAACGTCGTCCTCGG 59.903 60.000 2.29 0.00 37.67 4.63
31 32 0.096628 CCTAGACAACGTCGTCCTCG 59.903 60.000 2.29 0.00 37.67 4.63
32 33 0.450983 CCCTAGACAACGTCGTCCTC 59.549 60.000 2.29 0.00 37.67 3.71
33 34 1.593296 GCCCTAGACAACGTCGTCCT 61.593 60.000 2.29 0.00 37.67 3.85
34 35 1.153881 GCCCTAGACAACGTCGTCC 60.154 63.158 2.29 0.00 37.67 4.79
35 36 0.038892 TTGCCCTAGACAACGTCGTC 60.039 55.000 0.00 0.00 37.67 4.20
36 37 0.319297 GTTGCCCTAGACAACGTCGT 60.319 55.000 11.34 0.00 38.18 4.34
37 38 2.442084 GTTGCCCTAGACAACGTCG 58.558 57.895 11.34 0.00 38.18 5.12
41 42 1.574702 GGTGCGTTGCCCTAGACAAC 61.575 60.000 15.00 15.00 43.15 3.32
42 43 1.302192 GGTGCGTTGCCCTAGACAA 60.302 57.895 0.00 0.00 0.00 3.18
43 44 2.345991 GGTGCGTTGCCCTAGACA 59.654 61.111 0.00 0.00 0.00 3.41
44 45 2.813908 CGGTGCGTTGCCCTAGAC 60.814 66.667 0.00 0.00 0.00 2.59
45 46 2.992689 TCGGTGCGTTGCCCTAGA 60.993 61.111 0.00 0.00 0.00 2.43
46 47 2.813908 GTCGGTGCGTTGCCCTAG 60.814 66.667 0.00 0.00 0.00 3.02
47 48 4.728102 CGTCGGTGCGTTGCCCTA 62.728 66.667 0.00 0.00 0.00 3.53
52 53 3.179265 CTAGGCGTCGGTGCGTTG 61.179 66.667 0.00 0.00 34.38 4.10
53 54 2.704342 AAACTAGGCGTCGGTGCGTT 62.704 55.000 0.00 0.00 34.38 4.84
54 55 2.704342 AAAACTAGGCGTCGGTGCGT 62.704 55.000 0.00 1.06 36.79 5.24
55 56 1.562575 AAAAACTAGGCGTCGGTGCG 61.563 55.000 0.00 0.00 35.06 5.34
56 57 1.392510 CTAAAAACTAGGCGTCGGTGC 59.607 52.381 0.00 0.00 0.00 5.01
57 58 2.680577 ACTAAAAACTAGGCGTCGGTG 58.319 47.619 0.00 0.00 0.00 4.94
58 59 3.391506 AACTAAAAACTAGGCGTCGGT 57.608 42.857 0.00 0.00 0.00 4.69
59 60 3.495753 ACAAACTAAAAACTAGGCGTCGG 59.504 43.478 0.00 0.00 0.00 4.79
60 61 4.720530 ACAAACTAAAAACTAGGCGTCG 57.279 40.909 0.00 0.00 0.00 5.12
61 62 7.745022 AAAAACAAACTAAAAACTAGGCGTC 57.255 32.000 0.00 0.00 0.00 5.19
62 63 9.806203 AATAAAAACAAACTAAAAACTAGGCGT 57.194 25.926 0.00 0.00 0.00 5.68
86 87 8.647226 GCGTTCACATTAGCATTTAAGAAAAAT 58.353 29.630 0.00 0.00 0.00 1.82
87 88 7.149047 CGCGTTCACATTAGCATTTAAGAAAAA 60.149 33.333 0.00 0.00 0.00 1.94
88 89 6.304445 CGCGTTCACATTAGCATTTAAGAAAA 59.696 34.615 0.00 0.00 0.00 2.29
89 90 5.792962 CGCGTTCACATTAGCATTTAAGAAA 59.207 36.000 0.00 0.00 0.00 2.52
90 91 5.106869 ACGCGTTCACATTAGCATTTAAGAA 60.107 36.000 5.58 0.00 0.00 2.52
91 92 4.390603 ACGCGTTCACATTAGCATTTAAGA 59.609 37.500 5.58 0.00 0.00 2.10
92 93 4.491942 CACGCGTTCACATTAGCATTTAAG 59.508 41.667 10.22 0.00 0.00 1.85
93 94 4.399112 CACGCGTTCACATTAGCATTTAA 58.601 39.130 10.22 0.00 0.00 1.52
94 95 3.181515 CCACGCGTTCACATTAGCATTTA 60.182 43.478 10.22 0.00 0.00 1.40
95 96 2.414029 CCACGCGTTCACATTAGCATTT 60.414 45.455 10.22 0.00 0.00 2.32
96 97 1.130373 CCACGCGTTCACATTAGCATT 59.870 47.619 10.22 0.00 0.00 3.56
97 98 0.726827 CCACGCGTTCACATTAGCAT 59.273 50.000 10.22 0.00 0.00 3.79
98 99 0.319986 TCCACGCGTTCACATTAGCA 60.320 50.000 10.22 0.00 0.00 3.49
99 100 0.094730 GTCCACGCGTTCACATTAGC 59.905 55.000 10.22 0.00 0.00 3.09
100 101 1.654105 GAGTCCACGCGTTCACATTAG 59.346 52.381 10.22 0.00 0.00 1.73
101 102 1.670674 GGAGTCCACGCGTTCACATTA 60.671 52.381 10.22 0.00 0.00 1.90
102 103 0.949105 GGAGTCCACGCGTTCACATT 60.949 55.000 10.22 0.00 0.00 2.71
103 104 1.374252 GGAGTCCACGCGTTCACAT 60.374 57.895 10.22 0.00 0.00 3.21
104 105 2.028484 GGAGTCCACGCGTTCACA 59.972 61.111 10.22 0.00 0.00 3.58
105 106 2.737376 GGGAGTCCACGCGTTCAC 60.737 66.667 10.22 9.42 0.00 3.18
106 107 4.351938 CGGGAGTCCACGCGTTCA 62.352 66.667 10.22 0.00 40.39 3.18
128 129 0.674269 TTAAAAGCCGGCCACGTAGG 60.674 55.000 26.15 0.00 38.78 3.18
129 130 1.063469 CATTAAAAGCCGGCCACGTAG 59.937 52.381 26.15 4.12 38.78 3.51
130 131 1.088306 CATTAAAAGCCGGCCACGTA 58.912 50.000 26.15 7.81 38.78 3.57
131 132 0.891904 ACATTAAAAGCCGGCCACGT 60.892 50.000 26.15 8.96 38.78 4.49
132 133 0.242555 AACATTAAAAGCCGGCCACG 59.757 50.000 26.15 7.46 40.55 4.94
133 134 2.448926 AAACATTAAAAGCCGGCCAC 57.551 45.000 26.15 0.00 0.00 5.01
134 135 4.810191 ATTAAACATTAAAAGCCGGCCA 57.190 36.364 26.15 2.56 0.00 5.36
135 136 7.780008 ATTAATTAAACATTAAAAGCCGGCC 57.220 32.000 26.15 5.07 0.00 6.13
170 171 8.951787 AAACTGAATGCATGCATATTTAACAT 57.048 26.923 32.36 15.05 35.31 2.71
171 172 8.252417 AGAAACTGAATGCATGCATATTTAACA 58.748 29.630 32.36 21.35 35.31 2.41
172 173 8.638685 AGAAACTGAATGCATGCATATTTAAC 57.361 30.769 32.36 19.68 35.31 2.01
173 174 9.656040 AAAGAAACTGAATGCATGCATATTTAA 57.344 25.926 32.36 11.31 35.31 1.52
174 175 9.656040 AAAAGAAACTGAATGCATGCATATTTA 57.344 25.926 32.36 15.11 35.31 1.40
175 176 8.556213 AAAAGAAACTGAATGCATGCATATTT 57.444 26.923 32.36 26.18 35.31 1.40
176 177 8.556213 AAAAAGAAACTGAATGCATGCATATT 57.444 26.923 32.36 19.66 35.31 1.28
177 178 9.090692 GTAAAAAGAAACTGAATGCATGCATAT 57.909 29.630 32.36 21.63 35.31 1.78
178 179 7.273164 CGTAAAAAGAAACTGAATGCATGCATA 59.727 33.333 32.36 17.62 35.31 3.14
179 180 6.089820 CGTAAAAAGAAACTGAATGCATGCAT 59.910 34.615 27.46 27.46 38.46 3.96
180 181 5.401972 CGTAAAAAGAAACTGAATGCATGCA 59.598 36.000 25.04 25.04 0.00 3.96
181 182 5.666185 GCGTAAAAAGAAACTGAATGCATGC 60.666 40.000 11.82 11.82 0.00 4.06
182 183 5.164061 GGCGTAAAAAGAAACTGAATGCATG 60.164 40.000 0.00 0.00 0.00 4.06
183 184 4.923281 GGCGTAAAAAGAAACTGAATGCAT 59.077 37.500 0.00 0.00 0.00 3.96
184 185 4.295051 GGCGTAAAAAGAAACTGAATGCA 58.705 39.130 0.00 0.00 0.00 3.96
185 186 3.360758 CGGCGTAAAAAGAAACTGAATGC 59.639 43.478 0.00 0.00 0.00 3.56
186 187 4.533222 ACGGCGTAAAAAGAAACTGAATG 58.467 39.130 12.58 0.00 0.00 2.67
187 188 4.273969 TGACGGCGTAAAAAGAAACTGAAT 59.726 37.500 14.74 0.00 0.00 2.57
188 189 3.622163 TGACGGCGTAAAAAGAAACTGAA 59.378 39.130 14.74 0.00 0.00 3.02
189 190 3.196463 TGACGGCGTAAAAAGAAACTGA 58.804 40.909 14.74 0.00 0.00 3.41
190 191 3.595709 TGACGGCGTAAAAAGAAACTG 57.404 42.857 14.74 0.00 0.00 3.16
191 192 4.619437 TTTGACGGCGTAAAAAGAAACT 57.381 36.364 19.82 0.00 0.00 2.66
192 193 5.331980 CCATTTTGACGGCGTAAAAAGAAAC 60.332 40.000 31.84 11.32 30.53 2.78
193 194 4.740695 CCATTTTGACGGCGTAAAAAGAAA 59.259 37.500 31.84 15.92 30.53 2.52
194 195 4.291783 CCATTTTGACGGCGTAAAAAGAA 58.708 39.130 31.84 16.24 30.53 2.52
195 196 3.304794 CCCATTTTGACGGCGTAAAAAGA 60.305 43.478 31.84 16.89 30.53 2.52
196 197 2.983803 CCCATTTTGACGGCGTAAAAAG 59.016 45.455 31.84 24.12 30.53 2.27
197 198 2.361438 ACCCATTTTGACGGCGTAAAAA 59.639 40.909 31.14 31.14 31.43 1.94
198 199 1.955080 ACCCATTTTGACGGCGTAAAA 59.045 42.857 18.33 18.33 0.00 1.52
199 200 1.536331 GACCCATTTTGACGGCGTAAA 59.464 47.619 14.74 9.87 0.00 2.01
200 201 1.158434 GACCCATTTTGACGGCGTAA 58.842 50.000 14.74 0.91 0.00 3.18
201 202 1.015085 CGACCCATTTTGACGGCGTA 61.015 55.000 14.74 0.00 0.00 4.42
202 203 2.322081 CGACCCATTTTGACGGCGT 61.322 57.895 14.65 14.65 0.00 5.68
203 204 2.478746 CGACCCATTTTGACGGCG 59.521 61.111 4.80 4.80 0.00 6.46
204 205 2.178273 GCGACCCATTTTGACGGC 59.822 61.111 0.00 0.00 0.00 5.68
205 206 2.478746 CGCGACCCATTTTGACGG 59.521 61.111 0.00 0.00 0.00 4.79
206 207 2.202298 GCGCGACCCATTTTGACG 60.202 61.111 12.10 0.00 0.00 4.35
207 208 2.136196 TTGGCGCGACCCATTTTGAC 62.136 55.000 10.82 0.00 37.83 3.18
208 209 1.899054 TTGGCGCGACCCATTTTGA 60.899 52.632 10.82 0.00 37.83 2.69
209 210 1.732683 GTTGGCGCGACCCATTTTG 60.733 57.895 10.82 0.00 37.83 2.44
210 211 2.648454 GTTGGCGCGACCCATTTT 59.352 55.556 10.82 0.00 37.83 1.82
211 212 3.732892 CGTTGGCGCGACCCATTT 61.733 61.111 10.82 0.00 37.83 2.32
224 225 3.192954 ATGCGTGCACCCAACGTTG 62.193 57.895 21.47 21.47 0.00 4.10
225 226 2.903547 GATGCGTGCACCCAACGTT 61.904 57.895 12.15 0.00 0.00 3.99
226 227 3.353836 GATGCGTGCACCCAACGT 61.354 61.111 12.15 0.00 0.00 3.99
227 228 4.444024 CGATGCGTGCACCCAACG 62.444 66.667 17.80 17.80 0.00 4.10
228 229 3.047280 TCGATGCGTGCACCCAAC 61.047 61.111 12.15 6.47 0.00 3.77
229 230 3.047280 GTCGATGCGTGCACCCAA 61.047 61.111 12.15 0.00 0.00 4.12
233 234 2.612567 TTTGGGTCGATGCGTGCAC 61.613 57.895 6.82 6.82 0.00 4.57
234 235 2.281139 TTTGGGTCGATGCGTGCA 60.281 55.556 0.00 0.00 0.00 4.57
235 236 2.175811 GTTTGGGTCGATGCGTGC 59.824 61.111 0.00 0.00 0.00 5.34
236 237 2.474266 CGTTTGGGTCGATGCGTG 59.526 61.111 0.00 0.00 0.00 5.34
237 238 3.419759 GCGTTTGGGTCGATGCGT 61.420 61.111 0.00 0.00 0.00 5.24
238 239 4.499023 CGCGTTTGGGTCGATGCG 62.499 66.667 0.00 0.00 43.65 4.73
239 240 2.177654 TTTCGCGTTTGGGTCGATGC 62.178 55.000 5.77 0.00 31.96 3.91
240 241 0.179225 CTTTCGCGTTTGGGTCGATG 60.179 55.000 5.77 0.00 31.96 3.84
241 242 1.908066 GCTTTCGCGTTTGGGTCGAT 61.908 55.000 5.77 0.00 31.96 3.59
242 243 2.600475 GCTTTCGCGTTTGGGTCGA 61.600 57.895 5.77 0.00 0.00 4.20
243 244 2.127383 GCTTTCGCGTTTGGGTCG 60.127 61.111 5.77 0.00 0.00 4.79
261 262 4.719369 AGGCGAACACGAGCGTCC 62.719 66.667 0.00 0.00 31.45 4.79
262 263 3.470567 CAGGCGAACACGAGCGTC 61.471 66.667 0.00 0.00 0.00 5.19
269 270 3.195698 GATCGGCCAGGCGAACAC 61.196 66.667 20.42 10.95 0.00 3.32
270 271 4.467084 GGATCGGCCAGGCGAACA 62.467 66.667 20.42 0.00 36.34 3.18
271 272 4.467084 TGGATCGGCCAGGCGAAC 62.467 66.667 20.42 17.09 43.33 3.95
305 306 0.863144 CAAACGGACGGTGATTTCGT 59.137 50.000 0.00 0.00 44.03 3.85
306 307 0.165079 CCAAACGGACGGTGATTTCG 59.835 55.000 0.00 0.00 0.00 3.46
307 308 0.519961 CCCAAACGGACGGTGATTTC 59.480 55.000 0.00 0.00 0.00 2.17
308 309 0.179012 ACCCAAACGGACGGTGATTT 60.179 50.000 0.00 0.00 34.64 2.17
309 310 0.604511 GACCCAAACGGACGGTGATT 60.605 55.000 0.00 0.00 34.64 2.57
310 311 1.004200 GACCCAAACGGACGGTGAT 60.004 57.895 0.00 0.00 34.64 3.06
311 312 2.422591 GACCCAAACGGACGGTGA 59.577 61.111 0.00 0.00 34.64 4.02
312 313 3.039588 CGACCCAAACGGACGGTG 61.040 66.667 0.00 0.00 44.72 4.94
325 326 2.360726 AATTCCAACGGGCCGACC 60.361 61.111 35.78 0.00 0.00 4.79
326 327 2.874751 CAATTCCAACGGGCCGAC 59.125 61.111 35.78 0.00 0.00 4.79
327 328 3.059386 GCAATTCCAACGGGCCGA 61.059 61.111 35.78 10.47 0.00 5.54
328 329 3.051392 GAGCAATTCCAACGGGCCG 62.051 63.158 27.06 27.06 0.00 6.13
329 330 1.250840 AAGAGCAATTCCAACGGGCC 61.251 55.000 0.00 0.00 0.00 5.80
330 331 1.401905 CTAAGAGCAATTCCAACGGGC 59.598 52.381 0.00 0.00 0.00 6.13
331 332 2.017049 CCTAAGAGCAATTCCAACGGG 58.983 52.381 0.00 0.00 0.00 5.28
332 333 2.985896 TCCTAAGAGCAATTCCAACGG 58.014 47.619 0.00 0.00 0.00 4.44
333 334 4.212214 GCTATCCTAAGAGCAATTCCAACG 59.788 45.833 0.00 0.00 39.59 4.10
334 335 4.517075 GGCTATCCTAAGAGCAATTCCAAC 59.483 45.833 0.00 0.00 41.64 3.77
335 336 4.165950 TGGCTATCCTAAGAGCAATTCCAA 59.834 41.667 0.00 0.00 41.64 3.53
336 337 3.716353 TGGCTATCCTAAGAGCAATTCCA 59.284 43.478 0.00 0.00 41.64 3.53
337 338 4.068599 GTGGCTATCCTAAGAGCAATTCC 58.931 47.826 0.00 0.00 41.64 3.01
338 339 3.743396 CGTGGCTATCCTAAGAGCAATTC 59.257 47.826 0.00 0.00 41.64 2.17
339 340 3.733337 CGTGGCTATCCTAAGAGCAATT 58.267 45.455 0.00 0.00 41.64 2.32
340 341 2.548920 GCGTGGCTATCCTAAGAGCAAT 60.549 50.000 0.00 0.00 41.64 3.56
341 342 1.202533 GCGTGGCTATCCTAAGAGCAA 60.203 52.381 0.00 0.00 41.64 3.91
342 343 0.389391 GCGTGGCTATCCTAAGAGCA 59.611 55.000 0.00 0.00 41.64 4.26
343 344 0.389391 TGCGTGGCTATCCTAAGAGC 59.611 55.000 0.00 0.00 39.06 4.09
344 345 2.474816 GTTGCGTGGCTATCCTAAGAG 58.525 52.381 0.00 0.00 0.00 2.85
345 346 1.202371 CGTTGCGTGGCTATCCTAAGA 60.202 52.381 0.00 0.00 0.00 2.10
346 347 1.209128 CGTTGCGTGGCTATCCTAAG 58.791 55.000 0.00 0.00 0.00 2.18
350 351 3.573491 GGCGTTGCGTGGCTATCC 61.573 66.667 0.00 0.00 0.00 2.59
367 368 8.980143 ATGGATAACTAAAACCATTTGTTTCG 57.020 30.769 0.00 0.00 46.39 3.46
376 377 8.395605 GGGGGAATATATGGATAACTAAAACCA 58.604 37.037 0.00 0.00 36.83 3.67
422 428 0.984230 CTCTGGGAACTGGCTACCAA 59.016 55.000 0.00 0.00 30.80 3.67
456 462 7.223582 CACTATACATAAACTTCACAGCAGAGG 59.776 40.741 0.00 0.00 0.00 3.69
465 471 8.664798 GTCATTGCACACTATACATAAACTTCA 58.335 33.333 0.00 0.00 0.00 3.02
484 490 2.669364 CCTGCAAGTTTCAGTCATTGC 58.331 47.619 1.81 1.96 46.36 3.56
485 491 2.295349 AGCCTGCAAGTTTCAGTCATTG 59.705 45.455 1.81 0.00 0.00 2.82
486 492 2.295349 CAGCCTGCAAGTTTCAGTCATT 59.705 45.455 1.81 0.00 0.00 2.57
490 496 2.036236 GCAGCCTGCAAGTTTCAGT 58.964 52.632 12.82 0.00 44.26 3.41
508 520 7.308229 CCTGACTTGTTCTTAGACCTCAATTTG 60.308 40.741 0.00 0.00 0.00 2.32
560 574 4.675146 GCATATGTGGTTCAATGAAAGCGT 60.675 41.667 4.29 0.00 0.00 5.07
712 740 0.620556 TAAGAGGGGCCTTGCTTGAG 59.379 55.000 0.84 0.00 0.00 3.02
772 816 7.881775 ACCAGAAAGACAAGTCATAAACTTT 57.118 32.000 2.72 0.00 46.26 2.66
788 832 2.440539 AGTGCAGTCGTACCAGAAAG 57.559 50.000 0.00 0.00 0.00 2.62
819 863 3.406361 GCTGACCGACACACGCAG 61.406 66.667 0.00 0.00 41.07 5.18
838 882 3.181497 CCATGGAAATGCAGTTACTTCCG 60.181 47.826 10.94 0.00 40.26 4.30
855 899 2.355513 GCCCAGTGCTCTATATCCATGG 60.356 54.545 4.97 4.97 36.87 3.66
963 1136 3.068165 GCCTTACAAATATCCAAGGTGCC 59.932 47.826 0.00 0.00 39.82 5.01
1086 1317 3.642705 TCTACGATCTCGATGCATTTGG 58.357 45.455 0.00 0.00 43.02 3.28
1130 1371 3.688272 CAGCAGATTAAGCAAACCATCG 58.312 45.455 0.00 0.00 0.00 3.84
1133 1374 1.545582 GGCAGCAGATTAAGCAAACCA 59.454 47.619 0.00 0.00 0.00 3.67
1200 1467 3.013921 CTCTCGGAGTAGAAGTTCAGCT 58.986 50.000 5.50 2.26 0.00 4.24
1588 2907 4.554363 CGCTCCACCTCGCCGTAG 62.554 72.222 0.00 0.00 0.00 3.51
2077 3396 1.906574 ACGAACCTGCAATCCTTCCTA 59.093 47.619 0.00 0.00 0.00 2.94
2086 3405 0.249531 TAGCGTTGACGAACCTGCAA 60.250 50.000 7.85 0.00 43.02 4.08
2153 3476 3.001228 CACATACACACACACTGACACAC 59.999 47.826 0.00 0.00 0.00 3.82
2154 3477 3.194062 CACATACACACACACTGACACA 58.806 45.455 0.00 0.00 0.00 3.72
2155 3478 2.032894 GCACATACACACACACTGACAC 60.033 50.000 0.00 0.00 0.00 3.67
2156 3479 2.158971 AGCACATACACACACACTGACA 60.159 45.455 0.00 0.00 0.00 3.58
2157 3480 2.476619 GAGCACATACACACACACTGAC 59.523 50.000 0.00 0.00 0.00 3.51
2158 3481 2.754472 GAGCACATACACACACACTGA 58.246 47.619 0.00 0.00 0.00 3.41
2159 3482 1.456923 CGAGCACATACACACACACTG 59.543 52.381 0.00 0.00 0.00 3.66
2160 3483 1.068588 ACGAGCACATACACACACACT 59.931 47.619 0.00 0.00 0.00 3.55
2220 3551 3.328505 CACACAGTCACACATGATAGCA 58.671 45.455 0.00 0.00 37.14 3.49
2221 3552 2.094894 GCACACAGTCACACATGATAGC 59.905 50.000 0.00 0.00 37.14 2.97
2222 3553 3.328505 TGCACACAGTCACACATGATAG 58.671 45.455 0.00 0.00 37.14 2.08
2268 3599 4.587684 AGCATAGCACGTAGGTAAGGTATT 59.412 41.667 0.00 0.00 33.24 1.89
2276 3607 1.069204 CCATCAGCATAGCACGTAGGT 59.931 52.381 0.00 0.00 0.00 3.08
2280 3611 1.146930 CCCCATCAGCATAGCACGT 59.853 57.895 0.00 0.00 0.00 4.49
2282 3613 0.536006 GGTCCCCATCAGCATAGCAC 60.536 60.000 0.00 0.00 0.00 4.40
2298 3629 3.243336 GTCGATTGACATATAGCCGGTC 58.757 50.000 8.31 0.00 44.82 4.79
2299 3630 3.299340 GTCGATTGACATATAGCCGGT 57.701 47.619 8.31 0.00 44.82 5.28
2310 3641 8.552034 CCCTAAATAAGAATTCAGTCGATTGAC 58.448 37.037 10.49 4.78 45.86 3.18
2311 3642 8.265055 ACCCTAAATAAGAATTCAGTCGATTGA 58.735 33.333 6.51 6.51 0.00 2.57
2312 3643 8.438676 ACCCTAAATAAGAATTCAGTCGATTG 57.561 34.615 8.44 0.68 0.00 2.67
2313 3644 8.265055 TGACCCTAAATAAGAATTCAGTCGATT 58.735 33.333 8.44 0.00 0.00 3.34
2314 3645 7.792032 TGACCCTAAATAAGAATTCAGTCGAT 58.208 34.615 8.44 0.00 0.00 3.59
2315 3646 7.093465 ACTGACCCTAAATAAGAATTCAGTCGA 60.093 37.037 8.44 0.00 35.29 4.20
2316 3647 7.042335 ACTGACCCTAAATAAGAATTCAGTCG 58.958 38.462 8.44 0.00 35.29 4.18
2317 3648 8.041323 TGACTGACCCTAAATAAGAATTCAGTC 58.959 37.037 17.49 17.49 44.86 3.51
2318 3649 7.824779 GTGACTGACCCTAAATAAGAATTCAGT 59.175 37.037 8.44 0.67 39.30 3.41
2319 3650 8.043710 AGTGACTGACCCTAAATAAGAATTCAG 58.956 37.037 8.44 0.00 34.12 3.02
2320 3651 7.918076 AGTGACTGACCCTAAATAAGAATTCA 58.082 34.615 8.44 0.00 0.00 2.57
2321 3652 8.794335 AAGTGACTGACCCTAAATAAGAATTC 57.206 34.615 0.00 0.00 0.00 2.17
2322 3653 9.014297 CAAAGTGACTGACCCTAAATAAGAATT 57.986 33.333 0.00 0.00 0.00 2.17
2323 3654 8.164070 ACAAAGTGACTGACCCTAAATAAGAAT 58.836 33.333 0.00 0.00 0.00 2.40
2324 3655 7.514721 ACAAAGTGACTGACCCTAAATAAGAA 58.485 34.615 0.00 0.00 0.00 2.52
2325 3656 7.016268 AGACAAAGTGACTGACCCTAAATAAGA 59.984 37.037 0.00 0.00 0.00 2.10
2326 3657 7.162082 AGACAAAGTGACTGACCCTAAATAAG 58.838 38.462 0.00 0.00 0.00 1.73
2327 3658 7.074653 AGACAAAGTGACTGACCCTAAATAA 57.925 36.000 0.00 0.00 0.00 1.40
2328 3659 6.681729 AGACAAAGTGACTGACCCTAAATA 57.318 37.500 0.00 0.00 0.00 1.40
2329 3660 5.568620 AGACAAAGTGACTGACCCTAAAT 57.431 39.130 0.00 0.00 0.00 1.40
2330 3661 5.367945 AAGACAAAGTGACTGACCCTAAA 57.632 39.130 0.00 0.00 0.00 1.85
2331 3662 5.510861 GCTAAGACAAAGTGACTGACCCTAA 60.511 44.000 0.00 0.00 0.00 2.69
2332 3663 4.021368 GCTAAGACAAAGTGACTGACCCTA 60.021 45.833 0.00 0.00 0.00 3.53
2333 3664 3.244249 GCTAAGACAAAGTGACTGACCCT 60.244 47.826 0.00 0.00 0.00 4.34
2334 3665 3.067833 GCTAAGACAAAGTGACTGACCC 58.932 50.000 0.00 0.00 0.00 4.46
2335 3666 3.728845 TGCTAAGACAAAGTGACTGACC 58.271 45.455 0.00 0.00 0.00 4.02
2336 3667 5.734855 TTTGCTAAGACAAAGTGACTGAC 57.265 39.130 0.00 0.00 34.68 3.51
2345 3676 7.065803 GTGACCTATATGCTTTGCTAAGACAAA 59.934 37.037 12.29 0.00 37.20 2.83
2346 3677 6.538742 GTGACCTATATGCTTTGCTAAGACAA 59.461 38.462 12.29 0.00 32.92 3.18
2347 3678 6.049149 GTGACCTATATGCTTTGCTAAGACA 58.951 40.000 12.29 9.37 32.92 3.41
2348 3679 5.175856 CGTGACCTATATGCTTTGCTAAGAC 59.824 44.000 12.29 4.01 32.92 3.01
2349 3680 5.068591 TCGTGACCTATATGCTTTGCTAAGA 59.931 40.000 12.29 0.00 32.92 2.10
2350 3681 5.175856 GTCGTGACCTATATGCTTTGCTAAG 59.824 44.000 3.31 3.31 34.36 2.18
2351 3682 5.047847 GTCGTGACCTATATGCTTTGCTAA 58.952 41.667 0.00 0.00 0.00 3.09
2352 3683 4.617959 GTCGTGACCTATATGCTTTGCTA 58.382 43.478 0.00 0.00 0.00 3.49
2353 3684 3.458189 GTCGTGACCTATATGCTTTGCT 58.542 45.455 0.00 0.00 0.00 3.91
2354 3685 3.861569 GTCGTGACCTATATGCTTTGC 57.138 47.619 0.00 0.00 0.00 3.68
2367 3698 2.604046 ATATGAAGCTGGGTCGTGAC 57.396 50.000 0.00 0.00 0.00 3.67
2368 3699 3.704566 AGTAATATGAAGCTGGGTCGTGA 59.295 43.478 0.00 0.00 0.00 4.35
2369 3700 4.051922 GAGTAATATGAAGCTGGGTCGTG 58.948 47.826 0.00 0.00 0.00 4.35
2370 3701 3.069729 GGAGTAATATGAAGCTGGGTCGT 59.930 47.826 0.00 0.00 0.00 4.34
2371 3702 3.322254 AGGAGTAATATGAAGCTGGGTCG 59.678 47.826 0.00 0.00 0.00 4.79
2372 3703 4.965200 AGGAGTAATATGAAGCTGGGTC 57.035 45.455 0.00 0.00 0.00 4.46
2373 3704 5.468658 ACTAGGAGTAATATGAAGCTGGGT 58.531 41.667 0.00 0.00 0.00 4.51
2374 3705 5.777732 AGACTAGGAGTAATATGAAGCTGGG 59.222 44.000 0.00 0.00 0.00 4.45
2375 3706 6.719370 AGAGACTAGGAGTAATATGAAGCTGG 59.281 42.308 0.00 0.00 0.00 4.85
2376 3707 7.759489 AGAGACTAGGAGTAATATGAAGCTG 57.241 40.000 0.00 0.00 0.00 4.24
2377 3708 8.224720 AGAAGAGACTAGGAGTAATATGAAGCT 58.775 37.037 0.00 0.00 0.00 3.74
2378 3709 8.296713 CAGAAGAGACTAGGAGTAATATGAAGC 58.703 40.741 0.00 0.00 0.00 3.86
2379 3710 9.567776 TCAGAAGAGACTAGGAGTAATATGAAG 57.432 37.037 0.00 0.00 0.00 3.02
2380 3711 9.922477 TTCAGAAGAGACTAGGAGTAATATGAA 57.078 33.333 0.00 0.00 0.00 2.57
2395 3726 9.980780 GCAGTCTTAATTAAATTCAGAAGAGAC 57.019 33.333 0.00 0.00 0.00 3.36
2396 3727 9.167311 GGCAGTCTTAATTAAATTCAGAAGAGA 57.833 33.333 0.00 0.00 0.00 3.10
2397 3728 8.119226 CGGCAGTCTTAATTAAATTCAGAAGAG 58.881 37.037 0.00 0.00 0.00 2.85
2398 3729 7.822334 TCGGCAGTCTTAATTAAATTCAGAAGA 59.178 33.333 0.00 0.00 0.00 2.87
2399 3730 7.974675 TCGGCAGTCTTAATTAAATTCAGAAG 58.025 34.615 0.00 0.00 0.00 2.85
2400 3731 7.915293 TCGGCAGTCTTAATTAAATTCAGAA 57.085 32.000 0.00 0.00 0.00 3.02
2401 3732 7.915293 TTCGGCAGTCTTAATTAAATTCAGA 57.085 32.000 0.00 0.00 0.00 3.27
2402 3733 8.397906 TGATTCGGCAGTCTTAATTAAATTCAG 58.602 33.333 0.00 0.00 0.00 3.02
2403 3734 8.275015 TGATTCGGCAGTCTTAATTAAATTCA 57.725 30.769 0.00 0.00 0.00 2.57
2404 3735 8.612619 TCTGATTCGGCAGTCTTAATTAAATTC 58.387 33.333 0.00 0.00 37.20 2.17
2405 3736 8.398665 GTCTGATTCGGCAGTCTTAATTAAATT 58.601 33.333 0.00 0.00 37.20 1.82
2406 3737 7.254455 CGTCTGATTCGGCAGTCTTAATTAAAT 60.254 37.037 0.00 0.00 37.20 1.40
2407 3738 6.035650 CGTCTGATTCGGCAGTCTTAATTAAA 59.964 38.462 0.00 0.00 37.20 1.52
2408 3739 5.518847 CGTCTGATTCGGCAGTCTTAATTAA 59.481 40.000 0.00 0.00 37.20 1.40
2409 3740 5.041287 CGTCTGATTCGGCAGTCTTAATTA 58.959 41.667 0.00 0.00 37.20 1.40
2410 3741 3.865745 CGTCTGATTCGGCAGTCTTAATT 59.134 43.478 0.00 0.00 37.20 1.40
2411 3742 3.448686 CGTCTGATTCGGCAGTCTTAAT 58.551 45.455 0.00 0.00 37.20 1.40
2412 3743 2.416836 CCGTCTGATTCGGCAGTCTTAA 60.417 50.000 0.00 0.00 41.48 1.85
2413 3744 1.134367 CCGTCTGATTCGGCAGTCTTA 59.866 52.381 0.00 0.00 41.48 2.10
2414 3745 0.108615 CCGTCTGATTCGGCAGTCTT 60.109 55.000 0.00 0.00 41.48 3.01
2415 3746 1.513158 CCGTCTGATTCGGCAGTCT 59.487 57.895 0.00 0.00 41.48 3.24
2416 3747 1.519455 CCCGTCTGATTCGGCAGTC 60.519 63.158 1.46 0.00 45.71 3.51
2417 3748 1.827399 AACCCGTCTGATTCGGCAGT 61.827 55.000 1.46 0.00 45.71 4.40
2418 3749 1.079127 AACCCGTCTGATTCGGCAG 60.079 57.895 1.46 0.00 45.71 4.85
2419 3750 1.375396 CAACCCGTCTGATTCGGCA 60.375 57.895 1.46 0.00 45.71 5.69
2420 3751 2.106683 CCAACCCGTCTGATTCGGC 61.107 63.158 1.46 0.00 45.71 5.54
2421 3752 1.019278 CACCAACCCGTCTGATTCGG 61.019 60.000 0.07 0.07 46.49 4.30
2422 3753 0.320421 ACACCAACCCGTCTGATTCG 60.320 55.000 0.00 0.00 0.00 3.34
2423 3754 1.156736 CACACCAACCCGTCTGATTC 58.843 55.000 0.00 0.00 0.00 2.52
2424 3755 0.889186 GCACACCAACCCGTCTGATT 60.889 55.000 0.00 0.00 0.00 2.57
2425 3756 1.302511 GCACACCAACCCGTCTGAT 60.303 57.895 0.00 0.00 0.00 2.90
2426 3757 1.116536 TAGCACACCAACCCGTCTGA 61.117 55.000 0.00 0.00 0.00 3.27
2427 3758 0.670546 CTAGCACACCAACCCGTCTG 60.671 60.000 0.00 0.00 0.00 3.51
2428 3759 1.119574 ACTAGCACACCAACCCGTCT 61.120 55.000 0.00 0.00 0.00 4.18
2429 3760 0.250166 AACTAGCACACCAACCCGTC 60.250 55.000 0.00 0.00 0.00 4.79
2430 3761 0.181824 AAACTAGCACACCAACCCGT 59.818 50.000 0.00 0.00 0.00 5.28
2431 3762 0.872388 GAAACTAGCACACCAACCCG 59.128 55.000 0.00 0.00 0.00 5.28
2432 3763 2.152016 GAGAAACTAGCACACCAACCC 58.848 52.381 0.00 0.00 0.00 4.11
2433 3764 2.548480 GTGAGAAACTAGCACACCAACC 59.452 50.000 0.00 0.00 32.96 3.77
2434 3765 3.467803 AGTGAGAAACTAGCACACCAAC 58.532 45.455 0.00 0.00 37.36 3.77
2435 3766 3.838244 AGTGAGAAACTAGCACACCAA 57.162 42.857 0.00 0.00 37.36 3.67
2436 3767 3.466836 CAAGTGAGAAACTAGCACACCA 58.533 45.455 0.00 0.00 38.56 4.17
2437 3768 2.808543 CCAAGTGAGAAACTAGCACACC 59.191 50.000 0.00 0.00 38.56 4.16
2438 3769 2.224314 GCCAAGTGAGAAACTAGCACAC 59.776 50.000 0.00 0.00 38.56 3.82
2439 3770 2.158827 TGCCAAGTGAGAAACTAGCACA 60.159 45.455 0.00 0.00 41.16 4.57
2440 3771 2.494059 TGCCAAGTGAGAAACTAGCAC 58.506 47.619 0.00 0.00 41.16 4.40
2441 3772 2.928801 TGCCAAGTGAGAAACTAGCA 57.071 45.000 0.00 0.46 42.81 3.49
2442 3773 2.095516 GCTTGCCAAGTGAGAAACTAGC 60.096 50.000 6.28 0.00 38.56 3.42
2443 3774 3.406764 AGCTTGCCAAGTGAGAAACTAG 58.593 45.455 6.28 0.00 38.56 2.57
2444 3775 3.492102 AGCTTGCCAAGTGAGAAACTA 57.508 42.857 6.28 0.00 38.56 2.24
2445 3776 2.355010 AGCTTGCCAAGTGAGAAACT 57.645 45.000 6.28 0.00 42.60 2.66
2446 3777 3.142174 AGTAGCTTGCCAAGTGAGAAAC 58.858 45.455 6.28 0.00 0.00 2.78
2447 3778 3.492102 AGTAGCTTGCCAAGTGAGAAA 57.508 42.857 6.28 0.00 0.00 2.52
2448 3779 3.055819 CCTAGTAGCTTGCCAAGTGAGAA 60.056 47.826 6.28 0.00 0.00 2.87
2449 3780 2.497675 CCTAGTAGCTTGCCAAGTGAGA 59.502 50.000 6.28 0.00 0.00 3.27
2450 3781 2.234908 ACCTAGTAGCTTGCCAAGTGAG 59.765 50.000 6.28 0.00 0.00 3.51
2451 3782 2.257207 ACCTAGTAGCTTGCCAAGTGA 58.743 47.619 6.28 0.00 0.00 3.41
2452 3783 2.770164 ACCTAGTAGCTTGCCAAGTG 57.230 50.000 6.28 0.00 0.00 3.16
2453 3784 2.766828 CCTACCTAGTAGCTTGCCAAGT 59.233 50.000 6.28 0.00 35.06 3.16
2454 3785 3.031736 TCCTACCTAGTAGCTTGCCAAG 58.968 50.000 0.00 0.00 35.06 3.61
2455 3786 3.031736 CTCCTACCTAGTAGCTTGCCAA 58.968 50.000 0.00 0.00 35.06 4.52
2456 3787 2.667470 CTCCTACCTAGTAGCTTGCCA 58.333 52.381 0.00 0.00 35.06 4.92
2457 3788 1.341852 GCTCCTACCTAGTAGCTTGCC 59.658 57.143 0.00 0.00 35.06 4.52
2458 3789 2.032620 TGCTCCTACCTAGTAGCTTGC 58.967 52.381 0.00 1.80 35.06 4.01
2459 3790 4.081642 TGTTTGCTCCTACCTAGTAGCTTG 60.082 45.833 0.00 0.00 35.06 4.01
2460 3791 4.094476 TGTTTGCTCCTACCTAGTAGCTT 58.906 43.478 0.00 0.00 35.06 3.74
2461 3792 3.709587 TGTTTGCTCCTACCTAGTAGCT 58.290 45.455 0.00 0.00 35.06 3.32
2462 3793 4.081586 ACTTGTTTGCTCCTACCTAGTAGC 60.082 45.833 0.00 0.00 35.06 3.58
2463 3794 5.662674 ACTTGTTTGCTCCTACCTAGTAG 57.337 43.478 0.00 0.00 36.04 2.57
2464 3795 6.251471 AGTACTTGTTTGCTCCTACCTAGTA 58.749 40.000 0.00 0.00 0.00 1.82
2465 3796 5.085219 AGTACTTGTTTGCTCCTACCTAGT 58.915 41.667 0.00 0.00 0.00 2.57
2466 3797 5.662674 AGTACTTGTTTGCTCCTACCTAG 57.337 43.478 0.00 0.00 0.00 3.02
2467 3798 6.251471 AGTAGTACTTGTTTGCTCCTACCTA 58.749 40.000 0.00 0.00 0.00 3.08
2468 3799 5.085219 AGTAGTACTTGTTTGCTCCTACCT 58.915 41.667 0.00 0.00 0.00 3.08
2469 3800 5.402997 AGTAGTACTTGTTTGCTCCTACC 57.597 43.478 0.00 0.00 0.00 3.18
2470 3801 7.155655 ACTAGTAGTACTTGTTTGCTCCTAC 57.844 40.000 8.40 0.00 30.24 3.18
2471 3802 8.273780 GTACTAGTAGTACTTGTTTGCTCCTA 57.726 38.462 26.55 0.16 45.70 2.94
2472 3803 7.155655 GTACTAGTAGTACTTGTTTGCTCCT 57.844 40.000 26.55 0.00 45.70 3.69
2504 3835 9.635404 GCCATATCCTGATATTCTACTACTAGT 57.365 37.037 0.00 0.00 31.98 2.57
2505 3836 9.073475 GGCCATATCCTGATATTCTACTACTAG 57.927 40.741 0.00 0.00 31.98 2.57
2506 3837 8.005388 GGGCCATATCCTGATATTCTACTACTA 58.995 40.741 4.39 0.00 31.98 1.82
2507 3838 6.841755 GGGCCATATCCTGATATTCTACTACT 59.158 42.308 4.39 0.00 31.98 2.57
2508 3839 6.239064 CGGGCCATATCCTGATATTCTACTAC 60.239 46.154 4.39 0.00 34.34 2.73
2509 3840 5.833667 CGGGCCATATCCTGATATTCTACTA 59.166 44.000 4.39 0.00 34.34 1.82
2510 3841 4.651503 CGGGCCATATCCTGATATTCTACT 59.348 45.833 4.39 0.00 34.34 2.57
2511 3842 4.406003 ACGGGCCATATCCTGATATTCTAC 59.594 45.833 4.39 0.00 36.35 2.59
2512 3843 4.405680 CACGGGCCATATCCTGATATTCTA 59.594 45.833 4.39 0.00 36.35 2.10
2513 3844 3.198635 CACGGGCCATATCCTGATATTCT 59.801 47.826 4.39 0.00 36.35 2.40
2514 3845 3.055094 ACACGGGCCATATCCTGATATTC 60.055 47.826 4.39 0.00 36.35 1.75
2515 3846 2.912956 ACACGGGCCATATCCTGATATT 59.087 45.455 4.39 0.00 36.35 1.28
2516 3847 2.551270 ACACGGGCCATATCCTGATAT 58.449 47.619 4.39 0.00 36.35 1.63
2517 3848 2.024176 ACACGGGCCATATCCTGATA 57.976 50.000 4.39 0.00 36.35 2.15
2518 3849 2.024176 TACACGGGCCATATCCTGAT 57.976 50.000 4.39 0.00 36.35 2.90
2519 3850 2.024176 ATACACGGGCCATATCCTGA 57.976 50.000 4.39 0.00 36.35 3.86
2520 3851 2.859165 AATACACGGGCCATATCCTG 57.141 50.000 4.39 0.00 38.47 3.86
2521 3852 2.570302 GGTAATACACGGGCCATATCCT 59.430 50.000 4.39 0.00 0.00 3.24
2522 3853 2.355412 GGGTAATACACGGGCCATATCC 60.355 54.545 4.39 0.00 0.00 2.59
2523 3854 2.570302 AGGGTAATACACGGGCCATATC 59.430 50.000 4.39 0.00 0.00 1.63
2524 3855 2.627933 AGGGTAATACACGGGCCATAT 58.372 47.619 4.39 0.00 0.00 1.78
2525 3856 2.105134 CAAGGGTAATACACGGGCCATA 59.895 50.000 4.39 0.00 0.00 2.74
2526 3857 1.133915 CAAGGGTAATACACGGGCCAT 60.134 52.381 4.39 0.00 0.00 4.40
2753 4088 7.672660 TCTTCTTAAAGGGTTTTATTCTTCCCC 59.327 37.037 0.00 0.00 40.70 4.81
2818 4157 7.470192 TCTCAAAAGGTTTCAATCTTCCCTAT 58.530 34.615 0.00 0.00 0.00 2.57
2872 4212 9.542462 CTTCCCTCGATAACTCATTATTTTGTA 57.458 33.333 0.00 0.00 30.77 2.41
2888 4229 5.379706 AAGGATTTCATTCTTCCCTCGAT 57.620 39.130 0.00 0.00 0.00 3.59
2891 4232 7.119387 TCCTTAAAGGATTTCATTCTTCCCTC 58.881 38.462 0.00 0.00 40.06 4.30
3075 4423 9.168451 TCTTAAAGGTTTTCATTTTCCCAAAAC 57.832 29.630 0.00 0.00 38.67 2.43
3076 4424 9.740710 TTCTTAAAGGTTTTCATTTTCCCAAAA 57.259 25.926 0.00 0.00 35.41 2.44
3077 4425 9.389755 CTTCTTAAAGGTTTTCATTTTCCCAAA 57.610 29.630 0.00 0.00 35.41 3.28
3078 4426 8.763601 TCTTCTTAAAGGTTTTCATTTTCCCAA 58.236 29.630 0.00 0.00 35.41 4.12
3079 4427 8.312669 TCTTCTTAAAGGTTTTCATTTTCCCA 57.687 30.769 0.00 0.00 35.41 4.37
3080 4428 9.607988 TTTCTTCTTAAAGGTTTTCATTTTCCC 57.392 29.630 0.00 0.00 35.41 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.