Multiple sequence alignment - TraesCS2B01G097800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G097800 chr2B 100.000 5458 0 0 1 5458 57683721 57678264 0.000000e+00 10080.0
1 TraesCS2B01G097800 chr2B 83.906 2678 300 72 1720 4356 57780954 57778367 0.000000e+00 2436.0
2 TraesCS2B01G097800 chr2B 86.321 636 48 17 960 1588 57781716 57781113 0.000000e+00 656.0
3 TraesCS2B01G097800 chr2B 93.636 110 7 0 550 659 653915362 653915253 1.220000e-36 165.0
4 TraesCS2B01G097800 chr2B 87.970 133 11 1 529 656 329140072 329140204 9.470000e-33 152.0
5 TraesCS2B01G097800 chr2B 97.222 36 1 0 1357 1392 471320431 471320466 1.640000e-05 62.1
6 TraesCS2B01G097800 chr2D 93.292 3846 159 45 703 4503 35003621 34999830 0.000000e+00 5581.0
7 TraesCS2B01G097800 chr2D 84.109 2706 280 71 1719 4356 35025071 35022448 0.000000e+00 2477.0
8 TraesCS2B01G097800 chr2D 86.169 629 51 16 965 1585 35025828 35025228 0.000000e+00 647.0
9 TraesCS2B01G097800 chr2D 95.181 332 12 1 48 379 35004639 35004312 6.270000e-144 521.0
10 TraesCS2B01G097800 chr2D 94.175 206 10 2 5167 5371 34999845 34999641 4.100000e-81 313.0
11 TraesCS2B01G097800 chr2D 97.222 36 1 0 1357 1392 398670319 398670284 1.640000e-05 62.1
12 TraesCS2B01G097800 chr2A 90.003 2941 214 37 1621 4503 38324209 38321291 0.000000e+00 3729.0
13 TraesCS2B01G097800 chr2A 83.770 2674 289 76 1720 4356 38332071 38329506 0.000000e+00 2399.0
14 TraesCS2B01G097800 chr2A 88.093 907 49 26 701 1585 38325195 38324326 0.000000e+00 1022.0
15 TraesCS2B01G097800 chr2A 85.423 638 42 24 961 1588 38332825 38332229 2.790000e-172 616.0
16 TraesCS2B01G097800 chr2A 83.279 305 21 7 197 500 38325898 38325623 2.520000e-63 254.0
17 TraesCS2B01G097800 chr1B 96.267 643 20 4 4505 5143 269218260 269218902 0.000000e+00 1051.0
18 TraesCS2B01G097800 chr1B 96.262 642 21 3 4505 5143 25227110 25227751 0.000000e+00 1050.0
19 TraesCS2B01G097800 chr1B 95.950 642 23 3 4505 5143 390273122 390272481 0.000000e+00 1038.0
20 TraesCS2B01G097800 chr1B 95.666 646 25 3 4505 5147 644278842 644278197 0.000000e+00 1035.0
21 TraesCS2B01G097800 chr1B 89.147 129 9 1 531 654 50990210 50990082 7.320000e-34 156.0
22 TraesCS2B01G097800 chr6B 95.950 642 23 3 4505 5143 21064047 21063406 0.000000e+00 1038.0
23 TraesCS2B01G097800 chr6B 95.518 647 25 4 4501 5143 611351615 611352261 0.000000e+00 1031.0
24 TraesCS2B01G097800 chr6B 88.732 142 13 2 1056 1194 593358839 593358698 2.610000e-38 171.0
25 TraesCS2B01G097800 chr6B 88.060 134 11 1 528 656 117838463 117838596 2.630000e-33 154.0
26 TraesCS2B01G097800 chr6B 78.636 220 45 2 3927 4145 593354341 593354123 1.580000e-30 145.0
27 TraesCS2B01G097800 chr4B 95.931 639 23 3 4508 5143 59189780 59190418 0.000000e+00 1033.0
28 TraesCS2B01G097800 chr4B 94.825 657 30 4 4498 5150 629957940 629957284 0.000000e+00 1022.0
29 TraesCS2B01G097800 chr4B 94.737 95 3 2 5366 5458 665178444 665178350 4.410000e-31 147.0
30 TraesCS2B01G097800 chr3B 94.985 658 29 4 4490 5143 321771964 321772621 0.000000e+00 1029.0
31 TraesCS2B01G097800 chr3B 89.922 129 8 1 531 654 153653435 153653563 1.570000e-35 161.0
32 TraesCS2B01G097800 chr3B 92.593 108 8 0 547 654 809457861 809457968 7.320000e-34 156.0
33 TraesCS2B01G097800 chr3B 87.356 87 10 1 5366 5452 130123695 130123610 1.250000e-16 99.0
34 TraesCS2B01G097800 chr7D 81.188 505 79 15 3096 3594 8292671 8292177 5.130000e-105 392.0
35 TraesCS2B01G097800 chr7D 75.541 924 155 46 1715 2602 8293973 8293085 6.630000e-104 388.0
36 TraesCS2B01G097800 chr7D 85.050 301 33 8 1296 1587 8333442 8333145 4.130000e-76 296.0
37 TraesCS2B01G097800 chr7D 82.759 203 35 0 3937 4139 8291818 8291616 1.210000e-41 182.0
38 TraesCS2B01G097800 chr4A 75.596 881 168 37 1724 2591 731420103 731420949 5.130000e-105 392.0
39 TraesCS2B01G097800 chr4A 79.348 552 72 25 1060 1587 731419351 731419884 3.130000e-92 350.0
40 TraesCS2B01G097800 chr7A 80.550 509 80 11 3096 3594 8750318 8749819 1.860000e-99 374.0
41 TraesCS2B01G097800 chr7A 74.645 986 183 50 1788 2754 8751531 8750594 1.860000e-99 374.0
42 TraesCS2B01G097800 chr7A 79.890 547 76 18 1059 1587 8762942 8762412 2.400000e-98 370.0
43 TraesCS2B01G097800 chr6D 77.617 621 104 24 3133 3734 396840573 396839969 1.460000e-90 344.0
44 TraesCS2B01G097800 chr6D 80.455 220 41 2 3927 4145 396839694 396839476 3.380000e-37 167.0
45 TraesCS2B01G097800 chr6D 87.324 142 15 2 1056 1194 396845859 396845718 5.660000e-35 159.0
46 TraesCS2B01G097800 chr6D 90.323 62 6 0 2909 2970 396840839 396840778 1.260000e-11 82.4
47 TraesCS2B01G097800 chr6A 88.028 142 14 2 1056 1194 543210796 543210655 1.220000e-36 165.0
48 TraesCS2B01G097800 chr6A 79.091 220 44 2 3927 4145 543206248 543206030 3.410000e-32 150.0
49 TraesCS2B01G097800 chr6A 90.323 62 5 1 2909 2970 543207397 543207337 4.530000e-11 80.5
50 TraesCS2B01G097800 chr5A 89.051 137 10 1 528 659 590920326 590920462 1.220000e-36 165.0
51 TraesCS2B01G097800 chr1D 88.722 133 10 1 529 656 407699396 407699528 2.040000e-34 158.0
52 TraesCS2B01G097800 chr4D 90.517 116 11 0 547 662 54796528 54796413 2.630000e-33 154.0
53 TraesCS2B01G097800 chr5D 94.253 87 5 0 5366 5452 118833035 118833121 3.430000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G097800 chr2B 57678264 57683721 5457 True 10080.000000 10080 100.000000 1 5458 1 chr2B.!!$R1 5457
1 TraesCS2B01G097800 chr2B 57778367 57781716 3349 True 1546.000000 2436 85.113500 960 4356 2 chr2B.!!$R3 3396
2 TraesCS2B01G097800 chr2D 34999641 35004639 4998 True 2138.333333 5581 94.216000 48 5371 3 chr2D.!!$R2 5323
3 TraesCS2B01G097800 chr2D 35022448 35025828 3380 True 1562.000000 2477 85.139000 965 4356 2 chr2D.!!$R3 3391
4 TraesCS2B01G097800 chr2A 38321291 38332825 11534 True 1604.000000 3729 86.113600 197 4503 5 chr2A.!!$R1 4306
5 TraesCS2B01G097800 chr1B 269218260 269218902 642 False 1051.000000 1051 96.267000 4505 5143 1 chr1B.!!$F2 638
6 TraesCS2B01G097800 chr1B 25227110 25227751 641 False 1050.000000 1050 96.262000 4505 5143 1 chr1B.!!$F1 638
7 TraesCS2B01G097800 chr1B 390272481 390273122 641 True 1038.000000 1038 95.950000 4505 5143 1 chr1B.!!$R2 638
8 TraesCS2B01G097800 chr1B 644278197 644278842 645 True 1035.000000 1035 95.666000 4505 5147 1 chr1B.!!$R3 642
9 TraesCS2B01G097800 chr6B 21063406 21064047 641 True 1038.000000 1038 95.950000 4505 5143 1 chr6B.!!$R1 638
10 TraesCS2B01G097800 chr6B 611351615 611352261 646 False 1031.000000 1031 95.518000 4501 5143 1 chr6B.!!$F2 642
11 TraesCS2B01G097800 chr4B 59189780 59190418 638 False 1033.000000 1033 95.931000 4508 5143 1 chr4B.!!$F1 635
12 TraesCS2B01G097800 chr4B 629957284 629957940 656 True 1022.000000 1022 94.825000 4498 5150 1 chr4B.!!$R1 652
13 TraesCS2B01G097800 chr3B 321771964 321772621 657 False 1029.000000 1029 94.985000 4490 5143 1 chr3B.!!$F2 653
14 TraesCS2B01G097800 chr7D 8291616 8293973 2357 True 320.666667 392 79.829333 1715 4139 3 chr7D.!!$R2 2424
15 TraesCS2B01G097800 chr4A 731419351 731420949 1598 False 371.000000 392 77.472000 1060 2591 2 chr4A.!!$F1 1531
16 TraesCS2B01G097800 chr7A 8749819 8751531 1712 True 374.000000 374 77.597500 1788 3594 2 chr7A.!!$R2 1806
17 TraesCS2B01G097800 chr7A 8762412 8762942 530 True 370.000000 370 79.890000 1059 1587 1 chr7A.!!$R1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 259 0.028242 CGAGTCACCGCACTAGCTAG 59.972 60.0 19.44 19.44 39.10 3.42 F
341 342 0.031585 TTCCACTGTCCGACGTTGAG 59.968 55.0 3.74 0.00 0.00 3.02 F
1289 1689 0.036105 ATTGACCATCAGCTGACGCA 60.036 50.0 20.97 11.79 39.10 5.24 F
2549 11136 0.110486 TCAGGGCTTTGGAGGTTGAC 59.890 55.0 0.00 0.00 0.00 3.18 F
2715 11315 0.485099 TTGGTACCTTTGGGCCATGT 59.515 50.0 14.36 8.14 33.42 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1316 1734 0.454600 CCTCGTACAGCGGCTTCTTA 59.545 55.000 0.0 0.0 41.72 2.10 R
2069 2634 1.269361 CCCAACACCCGTAAGCAAAAC 60.269 52.381 0.0 0.0 0.00 2.43 R
3211 11843 0.393077 AATCCCCTCGAATAGCCGTG 59.607 55.000 0.0 0.0 0.00 4.94 R
4303 12988 1.766496 AGAGAAAGTCCGTTGGTGGAA 59.234 47.619 0.0 0.0 40.44 3.53 R
4696 13383 0.109226 GCCTTAGCACGACGACTTCT 60.109 55.000 0.0 0.0 39.53 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.933861 ATCCAGTTTTCTCGGCCTAAT 57.066 42.857 0.00 0.00 0.00 1.73
22 23 4.829872 TCCAGTTTTCTCGGCCTAATAA 57.170 40.909 0.00 0.00 0.00 1.40
23 24 5.168647 TCCAGTTTTCTCGGCCTAATAAA 57.831 39.130 0.00 0.00 0.00 1.40
24 25 4.939439 TCCAGTTTTCTCGGCCTAATAAAC 59.061 41.667 0.00 6.73 0.00 2.01
25 26 4.698304 CCAGTTTTCTCGGCCTAATAAACA 59.302 41.667 17.18 0.00 0.00 2.83
26 27 5.391629 CCAGTTTTCTCGGCCTAATAAACAC 60.392 44.000 17.18 3.52 0.00 3.32
27 28 5.411669 CAGTTTTCTCGGCCTAATAAACACT 59.588 40.000 17.18 5.25 0.00 3.55
28 29 6.002082 AGTTTTCTCGGCCTAATAAACACTT 58.998 36.000 17.18 1.33 0.00 3.16
29 30 6.489022 AGTTTTCTCGGCCTAATAAACACTTT 59.511 34.615 17.18 1.07 0.00 2.66
30 31 6.887626 TTTCTCGGCCTAATAAACACTTTT 57.112 33.333 0.00 0.00 0.00 2.27
31 32 6.887626 TTCTCGGCCTAATAAACACTTTTT 57.112 33.333 0.00 0.00 0.00 1.94
80 81 8.806429 CTTCCTCTGAAGCAGATAGAGATATA 57.194 38.462 0.00 0.00 41.45 0.86
179 180 5.961395 ATACGCTTAGGAATGTGTTTACG 57.039 39.130 0.00 0.00 0.00 3.18
193 194 6.880822 TGTGTTTACGTCTAGAATATGTGC 57.119 37.500 0.00 0.00 0.00 4.57
215 216 0.040514 TTTCAAACGCATGCTGGTCG 60.041 50.000 17.13 1.61 0.00 4.79
255 256 2.202623 CCGAGTCACCGCACTAGC 60.203 66.667 0.00 0.00 37.42 3.42
256 257 2.701780 CCGAGTCACCGCACTAGCT 61.702 63.158 0.00 0.00 39.10 3.32
257 258 1.374343 CCGAGTCACCGCACTAGCTA 61.374 60.000 0.00 0.00 39.10 3.32
258 259 0.028242 CGAGTCACCGCACTAGCTAG 59.972 60.000 19.44 19.44 39.10 3.42
341 342 0.031585 TTCCACTGTCCGACGTTGAG 59.968 55.000 3.74 0.00 0.00 3.02
420 460 5.591099 ACGATGATTTTCTGCTTTGTTTGT 58.409 33.333 0.00 0.00 0.00 2.83
421 461 6.042143 ACGATGATTTTCTGCTTTGTTTGTT 58.958 32.000 0.00 0.00 0.00 2.83
422 462 6.534793 ACGATGATTTTCTGCTTTGTTTGTTT 59.465 30.769 0.00 0.00 0.00 2.83
423 463 6.842282 CGATGATTTTCTGCTTTGTTTGTTTG 59.158 34.615 0.00 0.00 0.00 2.93
424 464 6.419980 TGATTTTCTGCTTTGTTTGTTTGG 57.580 33.333 0.00 0.00 0.00 3.28
426 466 4.543590 TTTCTGCTTTGTTTGTTTGGGA 57.456 36.364 0.00 0.00 0.00 4.37
428 468 4.751767 TCTGCTTTGTTTGTTTGGGAAT 57.248 36.364 0.00 0.00 0.00 3.01
429 469 4.440880 TCTGCTTTGTTTGTTTGGGAATG 58.559 39.130 0.00 0.00 0.00 2.67
430 470 2.941720 TGCTTTGTTTGTTTGGGAATGC 59.058 40.909 0.00 0.00 0.00 3.56
431 471 2.941720 GCTTTGTTTGTTTGGGAATGCA 59.058 40.909 0.00 0.00 0.00 3.96
432 472 3.376546 GCTTTGTTTGTTTGGGAATGCAA 59.623 39.130 0.00 0.00 0.00 4.08
433 473 4.142513 GCTTTGTTTGTTTGGGAATGCAAA 60.143 37.500 0.00 0.00 0.00 3.68
434 474 5.450274 GCTTTGTTTGTTTGGGAATGCAAAT 60.450 36.000 0.00 0.00 34.09 2.32
435 475 6.238593 GCTTTGTTTGTTTGGGAATGCAAATA 60.239 34.615 0.00 0.00 34.09 1.40
436 476 7.521910 GCTTTGTTTGTTTGGGAATGCAAATAT 60.522 33.333 0.00 0.00 34.09 1.28
437 477 8.908786 TTTGTTTGTTTGGGAATGCAAATATA 57.091 26.923 0.00 0.00 34.09 0.86
438 478 7.897575 TGTTTGTTTGGGAATGCAAATATAC 57.102 32.000 0.00 0.00 34.09 1.47
439 479 7.675062 TGTTTGTTTGGGAATGCAAATATACT 58.325 30.769 0.00 0.00 34.09 2.12
440 480 7.601886 TGTTTGTTTGGGAATGCAAATATACTG 59.398 33.333 0.00 0.00 34.09 2.74
441 481 6.219417 TGTTTGGGAATGCAAATATACTGG 57.781 37.500 0.00 0.00 0.00 4.00
463 503 9.760077 ACTGGTAGTATATTTTAACCGAGAATG 57.240 33.333 0.00 0.00 32.69 2.67
482 522 9.869844 CGAGAATGATATTCCAATAGTGTTTTC 57.130 33.333 0.00 0.00 0.00 2.29
534 574 7.549615 AACTTGATATAAGACGTTTTAGGCC 57.450 36.000 4.75 0.00 0.00 5.19
536 576 5.881923 TGATATAAGACGTTTTAGGCCCT 57.118 39.130 0.00 0.00 0.00 5.19
539 579 2.651382 AAGACGTTTTAGGCCCTGTT 57.349 45.000 0.00 0.00 0.00 3.16
540 580 2.180432 AGACGTTTTAGGCCCTGTTC 57.820 50.000 0.00 0.00 0.00 3.18
541 581 1.162698 GACGTTTTAGGCCCTGTTCC 58.837 55.000 0.00 0.00 0.00 3.62
542 582 0.604511 ACGTTTTAGGCCCTGTTCCG 60.605 55.000 0.00 0.00 0.00 4.30
543 583 0.320946 CGTTTTAGGCCCTGTTCCGA 60.321 55.000 0.00 0.00 0.00 4.55
544 584 1.450025 GTTTTAGGCCCTGTTCCGAG 58.550 55.000 0.00 0.00 0.00 4.63
545 585 1.061546 TTTTAGGCCCTGTTCCGAGT 58.938 50.000 0.00 0.00 0.00 4.18
546 586 0.611714 TTTAGGCCCTGTTCCGAGTC 59.388 55.000 0.00 0.00 0.00 3.36
547 587 0.543410 TTAGGCCCTGTTCCGAGTCA 60.543 55.000 0.00 0.00 0.00 3.41
548 588 0.970937 TAGGCCCTGTTCCGAGTCAG 60.971 60.000 0.00 0.00 0.00 3.51
550 590 2.948720 GCCCTGTTCCGAGTCAGCT 61.949 63.158 0.00 0.00 0.00 4.24
551 591 1.216710 CCCTGTTCCGAGTCAGCTC 59.783 63.158 0.00 0.00 38.35 4.09
552 592 1.216710 CCTGTTCCGAGTCAGCTCC 59.783 63.158 0.00 0.00 38.49 4.70
553 593 1.254284 CCTGTTCCGAGTCAGCTCCT 61.254 60.000 0.00 0.00 38.49 3.69
556 596 2.231478 CTGTTCCGAGTCAGCTCCTAAA 59.769 50.000 0.00 0.00 38.49 1.85
557 597 2.631062 TGTTCCGAGTCAGCTCCTAAAA 59.369 45.455 0.00 0.00 38.49 1.52
558 598 3.070446 TGTTCCGAGTCAGCTCCTAAAAA 59.930 43.478 0.00 0.00 38.49 1.94
559 599 4.254492 GTTCCGAGTCAGCTCCTAAAAAT 58.746 43.478 0.00 0.00 38.49 1.82
560 600 5.046878 TGTTCCGAGTCAGCTCCTAAAAATA 60.047 40.000 0.00 0.00 38.49 1.40
561 601 5.007385 TCCGAGTCAGCTCCTAAAAATAC 57.993 43.478 0.00 0.00 38.49 1.89
562 602 4.710375 TCCGAGTCAGCTCCTAAAAATACT 59.290 41.667 0.00 0.00 38.49 2.12
563 603 5.889853 TCCGAGTCAGCTCCTAAAAATACTA 59.110 40.000 0.00 0.00 38.49 1.82
564 604 6.039493 TCCGAGTCAGCTCCTAAAAATACTAG 59.961 42.308 0.00 0.00 38.49 2.57
565 605 6.039493 CCGAGTCAGCTCCTAAAAATACTAGA 59.961 42.308 0.00 0.00 38.49 2.43
566 606 7.416438 CCGAGTCAGCTCCTAAAAATACTAGAA 60.416 40.741 0.00 0.00 38.49 2.10
567 607 7.646130 CGAGTCAGCTCCTAAAAATACTAGAAG 59.354 40.741 0.00 0.00 38.49 2.85
568 608 7.269316 AGTCAGCTCCTAAAAATACTAGAAGC 58.731 38.462 0.00 0.00 0.00 3.86
569 609 7.125053 AGTCAGCTCCTAAAAATACTAGAAGCT 59.875 37.037 0.00 0.00 38.04 3.74
571 611 7.766278 TCAGCTCCTAAAAATACTAGAAGCTTG 59.234 37.037 2.10 0.00 35.51 4.01
573 613 7.984617 AGCTCCTAAAAATACTAGAAGCTTGAG 59.015 37.037 2.10 3.22 34.06 3.02
574 614 7.254624 GCTCCTAAAAATACTAGAAGCTTGAGC 60.255 40.741 2.10 6.80 42.49 4.26
575 615 7.620880 TCCTAAAAATACTAGAAGCTTGAGCA 58.379 34.615 2.10 0.00 45.16 4.26
576 616 8.267894 TCCTAAAAATACTAGAAGCTTGAGCAT 58.732 33.333 2.10 0.00 45.16 3.79
577 617 8.555361 CCTAAAAATACTAGAAGCTTGAGCATC 58.445 37.037 2.10 2.84 45.16 3.91
579 619 7.784633 AAAATACTAGAAGCTTGAGCATCTC 57.215 36.000 13.35 3.36 44.68 2.75
580 620 6.729690 AATACTAGAAGCTTGAGCATCTCT 57.270 37.500 13.35 9.88 44.68 3.10
581 621 6.729690 ATACTAGAAGCTTGAGCATCTCTT 57.270 37.500 13.35 5.62 44.68 2.85
583 623 5.418676 ACTAGAAGCTTGAGCATCTCTTTC 58.581 41.667 13.35 3.63 44.68 2.62
584 624 3.608796 AGAAGCTTGAGCATCTCTTTCC 58.391 45.455 2.10 0.00 44.68 3.13
585 625 2.416680 AGCTTGAGCATCTCTTTCCC 57.583 50.000 5.70 0.00 45.16 3.97
586 626 1.632409 AGCTTGAGCATCTCTTTCCCA 59.368 47.619 5.70 0.00 45.16 4.37
587 627 2.015587 GCTTGAGCATCTCTTTCCCAG 58.984 52.381 0.00 0.00 41.59 4.45
588 628 2.015587 CTTGAGCATCTCTTTCCCAGC 58.984 52.381 0.00 0.00 34.92 4.85
589 629 1.283347 TGAGCATCTCTTTCCCAGCT 58.717 50.000 0.00 0.00 34.92 4.24
590 630 1.209019 TGAGCATCTCTTTCCCAGCTC 59.791 52.381 0.00 0.00 46.33 4.09
591 631 0.545646 AGCATCTCTTTCCCAGCTCC 59.454 55.000 0.00 0.00 0.00 4.70
592 632 0.813210 GCATCTCTTTCCCAGCTCCG 60.813 60.000 0.00 0.00 0.00 4.63
593 633 0.539051 CATCTCTTTCCCAGCTCCGT 59.461 55.000 0.00 0.00 0.00 4.69
594 634 0.539051 ATCTCTTTCCCAGCTCCGTG 59.461 55.000 0.00 0.00 0.00 4.94
595 635 1.743252 CTCTTTCCCAGCTCCGTGC 60.743 63.158 0.00 0.00 43.29 5.34
596 636 2.747855 CTTTCCCAGCTCCGTGCC 60.748 66.667 0.00 0.00 44.23 5.01
597 637 3.249189 TTTCCCAGCTCCGTGCCT 61.249 61.111 0.00 0.00 44.23 4.75
598 638 2.754664 CTTTCCCAGCTCCGTGCCTT 62.755 60.000 0.00 0.00 44.23 4.35
600 640 2.747855 CCCAGCTCCGTGCCTTTC 60.748 66.667 0.00 0.00 44.23 2.62
601 641 3.121030 CCAGCTCCGTGCCTTTCG 61.121 66.667 0.00 0.00 44.23 3.46
605 645 2.095252 GCTCCGTGCCTTTCGACTC 61.095 63.158 0.00 0.00 35.15 3.36
606 646 1.446272 CTCCGTGCCTTTCGACTCC 60.446 63.158 0.00 0.00 0.00 3.85
607 647 2.154798 CTCCGTGCCTTTCGACTCCA 62.155 60.000 0.00 0.00 0.00 3.86
608 648 1.738099 CCGTGCCTTTCGACTCCAG 60.738 63.158 0.00 0.00 0.00 3.86
609 649 2.383527 CGTGCCTTTCGACTCCAGC 61.384 63.158 0.00 0.00 0.00 4.85
610 650 1.004440 GTGCCTTTCGACTCCAGCT 60.004 57.895 0.00 0.00 0.00 4.24
611 651 1.016653 GTGCCTTTCGACTCCAGCTC 61.017 60.000 0.00 0.00 0.00 4.09
612 652 1.448717 GCCTTTCGACTCCAGCTCC 60.449 63.158 0.00 0.00 0.00 4.70
613 653 1.153745 CCTTTCGACTCCAGCTCCG 60.154 63.158 0.00 0.00 0.00 4.63
614 654 1.153745 CTTTCGACTCCAGCTCCGG 60.154 63.158 0.00 0.00 0.00 5.14
616 656 3.578968 TTCGACTCCAGCTCCGGGA 62.579 63.158 0.00 0.00 0.00 5.14
626 666 4.835891 CTCCGGGAGCGGGGTAGT 62.836 72.222 11.83 0.00 0.00 2.73
633 673 2.683933 AGCGGGGTAGTGGAGTGG 60.684 66.667 0.00 0.00 0.00 4.00
634 674 4.468689 GCGGGGTAGTGGAGTGGC 62.469 72.222 0.00 0.00 0.00 5.01
636 676 3.782443 GGGGTAGTGGAGTGGCGG 61.782 72.222 0.00 0.00 0.00 6.13
637 677 3.782443 GGGTAGTGGAGTGGCGGG 61.782 72.222 0.00 0.00 0.00 6.13
638 678 3.001406 GGTAGTGGAGTGGCGGGT 61.001 66.667 0.00 0.00 0.00 5.28
639 679 2.577593 GTAGTGGAGTGGCGGGTC 59.422 66.667 0.00 0.00 0.00 4.46
640 680 1.982938 GTAGTGGAGTGGCGGGTCT 60.983 63.158 0.00 0.00 0.00 3.85
642 682 1.255667 TAGTGGAGTGGCGGGTCTTC 61.256 60.000 0.00 0.00 0.00 2.87
645 685 2.654877 GAGTGGCGGGTCTTCGAA 59.345 61.111 0.00 0.00 0.00 3.71
646 686 1.737008 GAGTGGCGGGTCTTCGAAC 60.737 63.158 0.00 0.00 0.00 3.95
647 687 2.029964 GTGGCGGGTCTTCGAACA 59.970 61.111 0.00 0.00 0.00 3.18
648 688 2.027625 GTGGCGGGTCTTCGAACAG 61.028 63.158 0.00 0.00 0.00 3.16
649 689 2.434359 GGCGGGTCTTCGAACAGG 60.434 66.667 0.00 0.00 0.00 4.00
651 691 2.434359 CGGGTCTTCGAACAGGGC 60.434 66.667 0.00 0.00 0.00 5.19
652 692 2.046217 GGGTCTTCGAACAGGGCC 60.046 66.667 0.00 0.00 0.00 5.80
653 693 2.593956 GGGTCTTCGAACAGGGCCT 61.594 63.158 0.00 0.00 0.00 5.19
660 1014 5.123936 GTCTTCGAACAGGGCCTTAATATT 58.876 41.667 1.32 0.00 0.00 1.28
663 1017 3.385433 TCGAACAGGGCCTTAATATTCGA 59.615 43.478 22.32 22.32 42.79 3.71
669 1023 4.211374 CAGGGCCTTAATATTCGAGTTTCG 59.789 45.833 1.32 0.00 42.10 3.46
681 1035 3.788937 TCGAGTTTCGAGTTTCCAGTTT 58.211 40.909 0.00 0.00 44.82 2.66
682 1036 3.554324 TCGAGTTTCGAGTTTCCAGTTTG 59.446 43.478 0.00 0.00 44.82 2.93
683 1037 3.618698 GAGTTTCGAGTTTCCAGTTTGC 58.381 45.455 0.00 0.00 0.00 3.68
684 1038 2.357952 AGTTTCGAGTTTCCAGTTTGCC 59.642 45.455 0.00 0.00 0.00 4.52
685 1039 0.941542 TTCGAGTTTCCAGTTTGCCG 59.058 50.000 0.00 0.00 0.00 5.69
686 1040 0.179067 TCGAGTTTCCAGTTTGCCGT 60.179 50.000 0.00 0.00 0.00 5.68
687 1041 0.661020 CGAGTTTCCAGTTTGCCGTT 59.339 50.000 0.00 0.00 0.00 4.44
688 1042 1.596954 CGAGTTTCCAGTTTGCCGTTG 60.597 52.381 0.00 0.00 0.00 4.10
689 1043 0.744281 AGTTTCCAGTTTGCCGTTGG 59.256 50.000 0.00 0.00 0.00 3.77
691 1045 1.134936 GTTTCCAGTTTGCCGTTGGTT 60.135 47.619 0.00 0.00 33.65 3.67
692 1046 2.054232 TTCCAGTTTGCCGTTGGTTA 57.946 45.000 0.00 0.00 33.65 2.85
693 1047 2.054232 TCCAGTTTGCCGTTGGTTAA 57.946 45.000 0.00 0.00 33.65 2.01
699 1053 3.504520 AGTTTGCCGTTGGTTAATAGTGG 59.495 43.478 0.00 0.00 0.00 4.00
700 1054 3.420300 TTGCCGTTGGTTAATAGTGGA 57.580 42.857 0.00 0.00 0.00 4.02
704 1058 3.267483 CCGTTGGTTAATAGTGGAGTGG 58.733 50.000 0.00 0.00 0.00 4.00
705 1059 3.307199 CCGTTGGTTAATAGTGGAGTGGT 60.307 47.826 0.00 0.00 0.00 4.16
746 1130 6.256686 TGCAGCACAAAAATGAAAAATTGAC 58.743 32.000 0.00 0.00 0.00 3.18
748 1132 5.902981 CAGCACAAAAATGAAAAATTGACCG 59.097 36.000 0.00 0.00 0.00 4.79
778 1162 5.081728 ACATATGCCACCGGAATACTAGTA 58.918 41.667 9.46 4.77 0.00 1.82
782 1166 3.885297 TGCCACCGGAATACTAGTAGTAC 59.115 47.826 9.46 5.57 32.84 2.73
783 1167 4.140536 GCCACCGGAATACTAGTAGTACT 58.859 47.826 9.46 8.14 32.84 2.73
784 1168 4.023365 GCCACCGGAATACTAGTAGTACTG 60.023 50.000 9.46 6.72 32.84 2.74
801 1185 9.367444 AGTAGTACTGGTATTTTTCGAGAAATG 57.633 33.333 20.78 8.95 31.96 2.32
802 1186 9.362539 GTAGTACTGGTATTTTTCGAGAAATGA 57.637 33.333 20.78 6.76 31.96 2.57
803 1187 8.842358 AGTACTGGTATTTTTCGAGAAATGAA 57.158 30.769 20.78 7.85 31.96 2.57
804 1188 9.449719 AGTACTGGTATTTTTCGAGAAATGAAT 57.550 29.630 20.78 7.23 31.96 2.57
807 1191 9.449719 ACTGGTATTTTTCGAGAAATGAATACT 57.550 29.630 20.78 0.00 35.91 2.12
809 1193 8.181573 TGGTATTTTTCGAGAAATGAATACTGC 58.818 33.333 20.78 12.57 35.91 4.40
810 1194 8.398665 GGTATTTTTCGAGAAATGAATACTGCT 58.601 33.333 20.78 0.00 35.91 4.24
830 1214 8.694581 ACTGCTAGTAGTATTTAGGAAGGTAG 57.305 38.462 12.23 0.00 0.00 3.18
844 1228 4.060205 GGAAGGTAGCACGTTGTTTCTTA 58.940 43.478 0.00 0.00 0.00 2.10
845 1229 4.151867 GGAAGGTAGCACGTTGTTTCTTAG 59.848 45.833 0.00 0.00 0.00 2.18
846 1230 4.332428 AGGTAGCACGTTGTTTCTTAGT 57.668 40.909 0.00 0.00 0.00 2.24
847 1231 5.458041 AGGTAGCACGTTGTTTCTTAGTA 57.542 39.130 0.00 0.00 0.00 1.82
848 1232 5.225642 AGGTAGCACGTTGTTTCTTAGTAC 58.774 41.667 0.00 0.00 0.00 2.73
849 1233 5.010415 AGGTAGCACGTTGTTTCTTAGTACT 59.990 40.000 0.00 0.00 0.00 2.73
850 1234 6.207417 AGGTAGCACGTTGTTTCTTAGTACTA 59.793 38.462 0.00 0.00 0.00 1.82
881 1265 6.106003 TGTGTGTACATGTAGCTTGGAATAG 58.894 40.000 5.62 0.00 0.00 1.73
940 1324 1.002366 GCGTGATGACTGATGACCAC 58.998 55.000 0.00 0.00 0.00 4.16
941 1325 1.645034 CGTGATGACTGATGACCACC 58.355 55.000 0.00 0.00 0.00 4.61
942 1326 1.066929 CGTGATGACTGATGACCACCA 60.067 52.381 0.00 0.00 0.00 4.17
945 1329 2.573009 TGATGACTGATGACCACCATGT 59.427 45.455 0.00 0.00 35.17 3.21
949 1333 3.270877 GACTGATGACCACCATGTAACC 58.729 50.000 0.00 0.00 35.17 2.85
955 1339 2.494471 TGACCACCATGTAACCGAGTAG 59.506 50.000 0.00 0.00 0.00 2.57
963 1347 3.559238 TGTAACCGAGTAGTTTCGTCC 57.441 47.619 0.00 0.00 38.88 4.79
1102 1491 4.143333 GGCCAAGCCGCTCGAGTA 62.143 66.667 15.13 0.00 39.62 2.59
1212 1609 3.726517 GTGCTTGCGTGCGTCCAT 61.727 61.111 0.00 0.00 35.36 3.41
1229 1626 1.736126 CCATCATGAGACACACACAGC 59.264 52.381 0.09 0.00 0.00 4.40
1233 1633 0.668706 ATGAGACACACACAGCGAGC 60.669 55.000 0.00 0.00 0.00 5.03
1254 1654 2.362120 ACCAGGAAGCTGCATGCC 60.362 61.111 16.68 0.00 44.23 4.40
1266 1666 0.179076 TGCATGCCGTATCTGTCCAG 60.179 55.000 16.68 0.00 0.00 3.86
1267 1667 0.882042 GCATGCCGTATCTGTCCAGG 60.882 60.000 6.36 0.00 0.00 4.45
1269 1669 2.900273 GCCGTATCTGTCCAGGCA 59.100 61.111 0.00 0.00 46.48 4.75
1272 1672 1.747206 GCCGTATCTGTCCAGGCAATT 60.747 52.381 0.00 0.00 46.48 2.32
1287 1687 1.202110 GCAATTGACCATCAGCTGACG 60.202 52.381 20.97 11.55 0.00 4.35
1288 1688 1.089920 AATTGACCATCAGCTGACGC 58.910 50.000 20.97 9.18 0.00 5.19
1289 1689 0.036105 ATTGACCATCAGCTGACGCA 60.036 50.000 20.97 11.79 39.10 5.24
1675 2146 5.105063 TCTTTCGTCTTCGTCGATCTACTA 58.895 41.667 0.00 0.00 37.18 1.82
1677 2148 4.039151 TCGTCTTCGTCGATCTACTAGT 57.961 45.455 0.00 0.00 38.33 2.57
1835 2359 8.200792 AGTGCTATTACAGTTCTTCTAGGAATG 58.799 37.037 0.00 0.00 0.00 2.67
1862 2393 7.431249 CACAGGTACTAACTAAAACTCTGACA 58.569 38.462 0.00 0.00 36.02 3.58
1993 2554 8.491134 AGAAAATAATGGCAGTGGTATGTACTA 58.509 33.333 0.00 0.00 0.00 1.82
2005 2566 7.442062 CAGTGGTATGTACTATGATGCAAATCA 59.558 37.037 0.00 0.00 34.73 2.57
2069 2634 9.676195 TTCAATTGTATGAAGTTGTGTTATGTG 57.324 29.630 5.13 0.00 34.50 3.21
2294 10853 5.308014 TGGGCTATAAGATAAGTCGTCGTA 58.692 41.667 0.00 0.00 0.00 3.43
2322 10883 4.610945 AGCGTTCCTTCTTCAAACAATTG 58.389 39.130 3.24 3.24 37.92 2.32
2429 11009 5.245531 AGATGTCACATGTATGTTTTCCGT 58.754 37.500 0.00 0.00 39.39 4.69
2549 11136 0.110486 TCAGGGCTTTGGAGGTTGAC 59.890 55.000 0.00 0.00 0.00 3.18
2581 11168 3.867493 GTCGTTGGTATTAGGTAAGTGCC 59.133 47.826 0.00 0.00 0.00 5.01
2651 11238 8.445493 TCATTTGCTATGTCTATATCAATTGCG 58.555 33.333 0.00 0.00 32.14 4.85
2652 11239 7.728847 TTTGCTATGTCTATATCAATTGCGT 57.271 32.000 0.00 0.00 28.34 5.24
2655 11242 8.411318 TGCTATGTCTATATCAATTGCGTATG 57.589 34.615 0.00 0.00 0.00 2.39
2675 11274 8.289618 GCGTATGGAGAAAATAGCAAATTGATA 58.710 33.333 0.00 0.00 0.00 2.15
2715 11315 0.485099 TTGGTACCTTTGGGCCATGT 59.515 50.000 14.36 8.14 33.42 3.21
2759 11359 7.619965 TGAATGTTGAAGGTATGTATCACTGA 58.380 34.615 0.00 0.00 0.00 3.41
2893 11503 7.663043 TTTTATGTGAAAAGTAACCCCACTT 57.337 32.000 0.00 0.00 40.49 3.16
2894 11504 6.887626 TTATGTGAAAAGTAACCCCACTTC 57.112 37.500 0.00 0.00 37.78 3.01
2901 11511 5.899631 AAAGTAACCCCACTTCTTGTCTA 57.100 39.130 0.00 0.00 37.78 2.59
2937 11547 5.063880 GGGTGGTATGTCTACATTTGGATC 58.936 45.833 0.12 0.00 37.76 3.36
3081 11709 6.312399 ACAATGATCTTTCAAACTACGCAA 57.688 33.333 0.00 0.00 34.96 4.85
3091 11719 4.536065 TCAAACTACGCAAGATGCAAAAG 58.464 39.130 2.99 0.00 45.36 2.27
3092 11720 4.274705 TCAAACTACGCAAGATGCAAAAGA 59.725 37.500 2.99 0.00 45.36 2.52
3093 11721 4.829064 AACTACGCAAGATGCAAAAGAA 57.171 36.364 2.99 0.00 45.36 2.52
3094 11722 4.829064 ACTACGCAAGATGCAAAAGAAA 57.171 36.364 2.99 0.00 45.36 2.52
3149 11781 6.701145 TTTGTGTTTGGCAGATGTTACTTA 57.299 33.333 0.00 0.00 0.00 2.24
3211 11843 0.610232 ATGAGGTTGCCCAGAAGCAC 60.610 55.000 0.00 0.00 43.97 4.40
3304 11936 3.588955 TCTTCTGTTGATCCACATCGTG 58.411 45.455 0.00 0.00 0.00 4.35
3313 11945 4.122046 TGATCCACATCGTGCTATTTCAG 58.878 43.478 0.00 0.00 31.34 3.02
3379 12011 5.373222 ACAATAAGTGAGCTGGTTGTACAA 58.627 37.500 3.59 3.59 33.92 2.41
3598 12244 8.234136 TCGAGTTGTCATAAGGTACAATAGAT 57.766 34.615 0.00 0.00 37.87 1.98
3748 12411 7.094248 CCCATGTGAGTTCAATTCATAAAGTGA 60.094 37.037 0.00 0.00 37.68 3.41
3833 12504 9.241919 TCCATTCTTGATTAATACAAAGCTTGA 57.758 29.630 0.00 0.00 0.00 3.02
3846 12517 6.607735 ACAAAGCTTGATTTCACAAATTGG 57.392 33.333 0.00 0.00 0.00 3.16
3860 12531 6.352516 TCACAAATTGGCACCATTTTAAAGT 58.647 32.000 8.74 2.32 31.13 2.66
3866 12537 6.917217 TTGGCACCATTTTAAAGTCTTTTG 57.083 33.333 2.51 0.00 0.00 2.44
3949 12621 3.662759 TTGGTGTAGATGGGGAATTCC 57.337 47.619 16.74 16.74 0.00 3.01
4120 12792 1.533731 ACAAATACACGGGCAAACTCG 59.466 47.619 0.00 0.00 0.00 4.18
4303 12988 3.767309 ACCACTCACCTTCTCTATCCT 57.233 47.619 0.00 0.00 0.00 3.24
4486 13172 8.908903 TCACTGTTTTAATCACATTAACCTTGT 58.091 29.630 0.00 0.00 34.68 3.16
4616 13303 1.135489 CCTAGCGACGACTACAAGCAA 60.135 52.381 0.00 0.00 0.00 3.91
4696 13383 5.066893 ACAACTTGTTGTAGTAGACAGTCGA 59.933 40.000 16.35 0.00 39.88 4.20
4854 13541 2.103094 CCACCAAAGATAGATCTGCCGA 59.897 50.000 5.18 0.00 37.19 5.54
4857 13544 2.805099 CCAAAGATAGATCTGCCGAAGC 59.195 50.000 5.18 0.00 37.19 3.86
4965 13653 4.521062 CGCCTCTCGCCTTCCTGG 62.521 72.222 0.00 0.00 39.35 4.45
5143 13833 1.002274 TTGGAGGAGGAGGAGGAGC 59.998 63.158 0.00 0.00 0.00 4.70
5150 13840 4.173924 GGAGGAGGAGCAGCAGGC 62.174 72.222 0.00 0.00 45.30 4.85
5159 13849 4.972875 GCAGCAGGCTCAATAGGT 57.027 55.556 0.00 0.00 40.25 3.08
5160 13850 2.401967 GCAGCAGGCTCAATAGGTG 58.598 57.895 0.00 0.00 40.25 4.00
5161 13851 0.107508 GCAGCAGGCTCAATAGGTGA 60.108 55.000 5.30 0.00 40.25 4.02
5162 13852 1.476471 GCAGCAGGCTCAATAGGTGAT 60.476 52.381 5.30 0.00 40.25 3.06
5163 13853 2.219458 CAGCAGGCTCAATAGGTGATG 58.781 52.381 0.00 0.00 35.07 3.07
5164 13854 2.121948 AGCAGGCTCAATAGGTGATGA 58.878 47.619 0.00 0.00 35.07 2.92
5219 13909 2.031508 CGCCAACACCGACAAACTTAAT 60.032 45.455 0.00 0.00 0.00 1.40
5229 13919 8.192110 ACACCGACAAACTTAATTACAATTGTT 58.808 29.630 17.78 0.92 31.68 2.83
5231 13921 9.887406 ACCGACAAACTTAATTACAATTGTTAG 57.113 29.630 17.78 9.14 31.68 2.34
5267 13957 8.397575 TGAGAACATATTCTAGCGAGATAACT 57.602 34.615 0.00 0.00 45.60 2.24
5317 14007 1.627864 TGCCAAACCCTAAAAGCCTC 58.372 50.000 0.00 0.00 0.00 4.70
5321 14011 1.893137 CAAACCCTAAAAGCCTCCACC 59.107 52.381 0.00 0.00 0.00 4.61
5364 14054 8.790718 CCTAAGCTTCTAGTCCATATAACGTAA 58.209 37.037 0.00 0.00 0.00 3.18
5367 14057 8.235359 AGCTTCTAGTCCATATAACGTAAAGT 57.765 34.615 0.00 0.00 0.00 2.66
5368 14058 8.136165 AGCTTCTAGTCCATATAACGTAAAGTG 58.864 37.037 0.00 0.00 0.00 3.16
5369 14059 8.133627 GCTTCTAGTCCATATAACGTAAAGTGA 58.866 37.037 0.00 0.00 0.00 3.41
5374 14064 7.916552 AGTCCATATAACGTAAAGTGAATTGC 58.083 34.615 0.00 0.00 0.00 3.56
5375 14065 7.551262 AGTCCATATAACGTAAAGTGAATTGCA 59.449 33.333 0.00 0.00 0.00 4.08
5376 14066 8.178964 GTCCATATAACGTAAAGTGAATTGCAA 58.821 33.333 0.00 0.00 0.00 4.08
5377 14067 8.731605 TCCATATAACGTAAAGTGAATTGCAAA 58.268 29.630 1.71 0.00 0.00 3.68
5378 14068 9.347934 CCATATAACGTAAAGTGAATTGCAAAA 57.652 29.630 1.71 0.00 0.00 2.44
5399 14089 5.695851 AAAACATCTACACTTCAGGCAAG 57.304 39.130 0.00 0.00 38.21 4.01
5400 14090 3.340814 ACATCTACACTTCAGGCAAGG 57.659 47.619 0.00 0.00 36.26 3.61
5401 14091 2.639839 ACATCTACACTTCAGGCAAGGT 59.360 45.455 0.00 0.00 36.26 3.50
5402 14092 3.073062 ACATCTACACTTCAGGCAAGGTT 59.927 43.478 0.00 0.00 36.26 3.50
5403 14093 3.857157 TCTACACTTCAGGCAAGGTTT 57.143 42.857 0.00 0.00 36.26 3.27
5404 14094 3.476552 TCTACACTTCAGGCAAGGTTTG 58.523 45.455 0.00 0.00 36.26 2.93
5418 14108 5.587388 CAAGGTTTGCAGGAATCATACAT 57.413 39.130 0.00 0.00 0.00 2.29
5419 14109 5.969423 CAAGGTTTGCAGGAATCATACATT 58.031 37.500 0.00 0.00 0.00 2.71
5420 14110 6.400568 CAAGGTTTGCAGGAATCATACATTT 58.599 36.000 0.00 0.00 0.00 2.32
5421 14111 7.546358 CAAGGTTTGCAGGAATCATACATTTA 58.454 34.615 0.00 0.00 0.00 1.40
5422 14112 7.100458 AGGTTTGCAGGAATCATACATTTAC 57.900 36.000 0.00 0.00 0.00 2.01
5423 14113 5.971202 GGTTTGCAGGAATCATACATTTACG 59.029 40.000 0.00 0.00 0.00 3.18
5424 14114 5.749596 TTGCAGGAATCATACATTTACGG 57.250 39.130 0.00 0.00 0.00 4.02
5425 14115 5.029807 TGCAGGAATCATACATTTACGGA 57.970 39.130 0.00 0.00 0.00 4.69
5426 14116 5.432645 TGCAGGAATCATACATTTACGGAA 58.567 37.500 0.00 0.00 0.00 4.30
5427 14117 6.061441 TGCAGGAATCATACATTTACGGAAT 58.939 36.000 0.00 0.00 0.00 3.01
5428 14118 6.545666 TGCAGGAATCATACATTTACGGAATT 59.454 34.615 0.00 0.00 0.00 2.17
5429 14119 6.857964 GCAGGAATCATACATTTACGGAATTG 59.142 38.462 0.68 0.68 0.00 2.32
5430 14120 7.468631 GCAGGAATCATACATTTACGGAATTGT 60.469 37.037 12.27 12.27 34.41 2.71
5431 14121 7.857389 CAGGAATCATACATTTACGGAATTGTG 59.143 37.037 16.36 2.99 32.71 3.33
5432 14122 6.636850 GGAATCATACATTTACGGAATTGTGC 59.363 38.462 16.36 1.61 32.71 4.57
5433 14123 5.493133 TCATACATTTACGGAATTGTGCC 57.507 39.130 16.36 0.00 32.71 5.01
5434 14124 4.944317 TCATACATTTACGGAATTGTGCCA 59.056 37.500 16.36 0.00 32.71 4.92
5435 14125 5.416013 TCATACATTTACGGAATTGTGCCAA 59.584 36.000 16.36 0.00 32.71 4.52
5436 14126 4.592485 ACATTTACGGAATTGTGCCAAA 57.408 36.364 7.10 0.00 29.99 3.28
5437 14127 5.146010 ACATTTACGGAATTGTGCCAAAT 57.854 34.783 7.10 0.00 29.99 2.32
5438 14128 6.274157 ACATTTACGGAATTGTGCCAAATA 57.726 33.333 7.10 0.00 29.99 1.40
5439 14129 6.329496 ACATTTACGGAATTGTGCCAAATAG 58.671 36.000 7.10 0.00 29.99 1.73
5440 14130 2.939460 ACGGAATTGTGCCAAATAGC 57.061 45.000 0.00 0.00 0.00 2.97
5441 14131 2.166829 ACGGAATTGTGCCAAATAGCA 58.833 42.857 0.00 0.00 41.46 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.411669 AGTGTTTATTAGGCCGAGAAAACTG 59.588 40.000 20.16 0.00 0.00 3.16
5 6 5.874895 AGTGTTTATTAGGCCGAGAAAAC 57.125 39.130 15.57 15.57 0.00 2.43
8 9 6.887626 AAAAAGTGTTTATTAGGCCGAGAA 57.112 33.333 0.00 0.00 0.00 2.87
36 37 5.751990 AGGAAGTGTTTATTAGGCGTATTCG 59.248 40.000 0.00 0.00 40.37 3.34
37 38 6.985059 AGAGGAAGTGTTTATTAGGCGTATTC 59.015 38.462 0.00 0.00 0.00 1.75
38 39 6.761714 CAGAGGAAGTGTTTATTAGGCGTATT 59.238 38.462 0.00 0.00 0.00 1.89
39 40 6.097839 TCAGAGGAAGTGTTTATTAGGCGTAT 59.902 38.462 0.00 0.00 0.00 3.06
40 41 5.419788 TCAGAGGAAGTGTTTATTAGGCGTA 59.580 40.000 0.00 0.00 0.00 4.42
41 42 4.222145 TCAGAGGAAGTGTTTATTAGGCGT 59.778 41.667 0.00 0.00 0.00 5.68
42 43 4.755411 TCAGAGGAAGTGTTTATTAGGCG 58.245 43.478 0.00 0.00 0.00 5.52
43 44 6.670077 CTTCAGAGGAAGTGTTTATTAGGC 57.330 41.667 0.00 0.00 44.48 3.93
93 94 9.134734 GTTGTTGAAGATTACACAAGTTCAAAA 57.865 29.630 0.00 0.00 38.49 2.44
113 114 7.290857 ACACGAATATGCTAGTAAGTTGTTG 57.709 36.000 0.00 0.00 0.00 3.33
155 156 6.473455 ACGTAAACACATTCCTAAGCGTATAC 59.527 38.462 0.00 0.00 0.00 1.47
179 180 8.315554 CGTTTGAAAATGCACATATTCTAGAC 57.684 34.615 0.00 0.00 0.00 2.59
193 194 2.406130 ACCAGCATGCGTTTGAAAATG 58.594 42.857 13.01 1.13 31.97 2.32
215 216 1.227853 ACCAAGTGGGCTTCGTGAC 60.228 57.895 1.69 0.00 42.05 3.67
255 256 2.586792 GTGCAGGTCCTGGCCTAG 59.413 66.667 20.72 0.00 37.04 3.02
256 257 3.009115 GGTGCAGGTCCTGGCCTA 61.009 66.667 20.72 0.00 37.04 3.93
257 258 4.990910 AGGTGCAGGTCCTGGCCT 62.991 66.667 20.72 4.13 39.99 5.19
258 259 4.729918 CAGGTGCAGGTCCTGGCC 62.730 72.222 20.72 5.30 46.03 5.36
279 280 1.229428 CACATGCGTCCAGTTCAACT 58.771 50.000 0.00 0.00 0.00 3.16
341 342 0.168128 CGAAATCAAAGTCACGGCCC 59.832 55.000 0.00 0.00 0.00 5.80
395 435 6.198966 ACAAACAAAGCAGAAAATCATCGTTC 59.801 34.615 0.00 0.00 0.00 3.95
401 441 5.353678 CCCAAACAAACAAAGCAGAAAATCA 59.646 36.000 0.00 0.00 0.00 2.57
406 446 4.543590 TTCCCAAACAAACAAAGCAGAA 57.456 36.364 0.00 0.00 0.00 3.02
420 460 7.122715 ACTACCAGTATATTTGCATTCCCAAA 58.877 34.615 0.00 0.00 38.87 3.28
421 461 6.668645 ACTACCAGTATATTTGCATTCCCAA 58.331 36.000 0.00 0.00 0.00 4.12
422 462 6.260700 ACTACCAGTATATTTGCATTCCCA 57.739 37.500 0.00 0.00 0.00 4.37
437 477 9.760077 CATTCTCGGTTAAAATATACTACCAGT 57.240 33.333 0.00 0.00 0.00 4.00
438 478 9.976511 TCATTCTCGGTTAAAATATACTACCAG 57.023 33.333 0.00 0.00 0.00 4.00
501 541 8.246430 ACGTCTTATATCAAGTTATGGAGGAA 57.754 34.615 0.00 0.00 0.00 3.36
503 543 8.888579 AAACGTCTTATATCAAGTTATGGAGG 57.111 34.615 0.00 0.00 0.00 4.30
508 548 9.269453 GGCCTAAAACGTCTTATATCAAGTTAT 57.731 33.333 0.00 0.00 0.00 1.89
524 564 0.320946 TCGGAACAGGGCCTAAAACG 60.321 55.000 5.28 9.71 0.00 3.60
530 570 2.203788 TGACTCGGAACAGGGCCT 60.204 61.111 0.00 0.00 0.00 5.19
531 571 2.266055 CTGACTCGGAACAGGGCC 59.734 66.667 0.00 0.00 0.00 5.80
532 572 2.435059 GCTGACTCGGAACAGGGC 60.435 66.667 11.79 0.00 35.05 5.19
533 573 1.216710 GAGCTGACTCGGAACAGGG 59.783 63.158 0.00 0.00 35.05 4.45
534 574 1.216710 GGAGCTGACTCGGAACAGG 59.783 63.158 0.00 0.00 44.48 4.00
536 576 1.919240 TTAGGAGCTGACTCGGAACA 58.081 50.000 0.00 0.00 44.48 3.18
539 579 4.710375 AGTATTTTTAGGAGCTGACTCGGA 59.290 41.667 0.00 0.00 44.48 4.55
540 580 5.012328 AGTATTTTTAGGAGCTGACTCGG 57.988 43.478 0.00 0.00 44.48 4.63
541 581 7.028926 TCTAGTATTTTTAGGAGCTGACTCG 57.971 40.000 0.00 0.00 44.48 4.18
542 582 7.436970 GCTTCTAGTATTTTTAGGAGCTGACTC 59.563 40.741 0.00 0.00 43.49 3.36
543 583 7.269316 GCTTCTAGTATTTTTAGGAGCTGACT 58.731 38.462 0.00 0.00 43.49 3.41
544 584 7.471657 GCTTCTAGTATTTTTAGGAGCTGAC 57.528 40.000 0.00 0.00 43.49 3.51
548 588 7.254624 GCTCAAGCTTCTAGTATTTTTAGGAGC 60.255 40.741 0.00 2.83 45.99 4.70
550 590 7.620880 TGCTCAAGCTTCTAGTATTTTTAGGA 58.379 34.615 0.00 0.00 42.66 2.94
551 591 7.849804 TGCTCAAGCTTCTAGTATTTTTAGG 57.150 36.000 0.00 0.00 42.66 2.69
564 604 2.682352 GGGAAAGAGATGCTCAAGCTTC 59.318 50.000 0.00 9.27 43.17 3.86
565 605 2.040813 TGGGAAAGAGATGCTCAAGCTT 59.959 45.455 3.32 0.00 42.66 3.74
566 606 1.632409 TGGGAAAGAGATGCTCAAGCT 59.368 47.619 3.32 0.00 42.66 3.74
567 607 2.015587 CTGGGAAAGAGATGCTCAAGC 58.984 52.381 0.00 0.00 42.50 4.01
568 608 2.015587 GCTGGGAAAGAGATGCTCAAG 58.984 52.381 0.00 0.00 32.06 3.02
569 609 1.632409 AGCTGGGAAAGAGATGCTCAA 59.368 47.619 0.00 0.00 32.06 3.02
571 611 1.474855 GGAGCTGGGAAAGAGATGCTC 60.475 57.143 0.00 0.00 44.08 4.26
573 613 0.813210 CGGAGCTGGGAAAGAGATGC 60.813 60.000 0.00 0.00 0.00 3.91
574 614 0.539051 ACGGAGCTGGGAAAGAGATG 59.461 55.000 0.00 0.00 0.00 2.90
575 615 0.539051 CACGGAGCTGGGAAAGAGAT 59.461 55.000 0.00 0.00 0.00 2.75
576 616 1.975327 CACGGAGCTGGGAAAGAGA 59.025 57.895 0.00 0.00 0.00 3.10
577 617 1.743252 GCACGGAGCTGGGAAAGAG 60.743 63.158 0.00 0.00 41.15 2.85
578 618 2.347490 GCACGGAGCTGGGAAAGA 59.653 61.111 0.00 0.00 41.15 2.52
579 619 2.747855 GGCACGGAGCTGGGAAAG 60.748 66.667 0.00 0.00 44.79 2.62
580 620 2.351924 AAAGGCACGGAGCTGGGAAA 62.352 55.000 0.00 0.00 44.79 3.13
581 621 2.748058 GAAAGGCACGGAGCTGGGAA 62.748 60.000 0.00 0.00 44.79 3.97
583 623 2.747855 GAAAGGCACGGAGCTGGG 60.748 66.667 0.00 0.00 44.79 4.45
584 624 3.121030 CGAAAGGCACGGAGCTGG 61.121 66.667 0.00 0.00 44.79 4.85
585 625 2.048222 TCGAAAGGCACGGAGCTG 60.048 61.111 0.00 0.00 44.79 4.24
586 626 2.048127 GTCGAAAGGCACGGAGCT 60.048 61.111 0.00 0.00 44.79 4.09
587 627 2.048127 AGTCGAAAGGCACGGAGC 60.048 61.111 0.00 0.00 44.65 4.70
588 628 1.446272 GGAGTCGAAAGGCACGGAG 60.446 63.158 0.00 0.00 38.99 4.63
589 629 2.154798 CTGGAGTCGAAAGGCACGGA 62.155 60.000 0.00 0.00 38.99 4.69
590 630 1.738099 CTGGAGTCGAAAGGCACGG 60.738 63.158 0.00 0.00 38.99 4.94
591 631 2.383527 GCTGGAGTCGAAAGGCACG 61.384 63.158 0.00 0.00 38.99 5.34
592 632 1.004440 AGCTGGAGTCGAAAGGCAC 60.004 57.895 0.00 0.00 38.99 5.01
593 633 1.293498 GAGCTGGAGTCGAAAGGCA 59.707 57.895 0.00 0.00 38.99 4.75
594 634 1.448717 GGAGCTGGAGTCGAAAGGC 60.449 63.158 0.00 0.00 0.00 4.35
595 635 1.153745 CGGAGCTGGAGTCGAAAGG 60.154 63.158 0.00 0.00 0.00 3.11
596 636 1.153745 CCGGAGCTGGAGTCGAAAG 60.154 63.158 0.00 0.00 0.00 2.62
597 637 2.646175 CCCGGAGCTGGAGTCGAAA 61.646 63.158 0.73 0.00 0.00 3.46
598 638 3.068691 CCCGGAGCTGGAGTCGAA 61.069 66.667 0.73 0.00 0.00 3.71
600 640 3.522731 CTCCCGGAGCTGGAGTCG 61.523 72.222 0.73 0.00 43.68 4.18
613 653 3.155167 CTCCACTACCCCGCTCCC 61.155 72.222 0.00 0.00 0.00 4.30
614 654 2.363925 ACTCCACTACCCCGCTCC 60.364 66.667 0.00 0.00 0.00 4.70
616 656 2.683933 CCACTCCACTACCCCGCT 60.684 66.667 0.00 0.00 0.00 5.52
617 657 4.468689 GCCACTCCACTACCCCGC 62.469 72.222 0.00 0.00 0.00 6.13
618 658 4.143333 CGCCACTCCACTACCCCG 62.143 72.222 0.00 0.00 0.00 5.73
619 659 3.782443 CCGCCACTCCACTACCCC 61.782 72.222 0.00 0.00 0.00 4.95
620 660 3.782443 CCCGCCACTCCACTACCC 61.782 72.222 0.00 0.00 0.00 3.69
621 661 3.001406 ACCCGCCACTCCACTACC 61.001 66.667 0.00 0.00 0.00 3.18
622 662 1.542187 AAGACCCGCCACTCCACTAC 61.542 60.000 0.00 0.00 0.00 2.73
623 663 1.229082 AAGACCCGCCACTCCACTA 60.229 57.895 0.00 0.00 0.00 2.74
625 665 2.047179 GAAGACCCGCCACTCCAC 60.047 66.667 0.00 0.00 0.00 4.02
626 666 3.691342 CGAAGACCCGCCACTCCA 61.691 66.667 0.00 0.00 0.00 3.86
627 667 2.939261 TTCGAAGACCCGCCACTCC 61.939 63.158 0.00 0.00 34.32 3.85
628 668 1.737008 GTTCGAAGACCCGCCACTC 60.737 63.158 0.00 0.00 34.32 3.51
633 673 2.434359 CCCTGTTCGAAGACCCGC 60.434 66.667 0.00 0.00 34.32 6.13
634 674 2.434359 GCCCTGTTCGAAGACCCG 60.434 66.667 0.00 0.00 34.32 5.28
636 676 0.611714 TAAGGCCCTGTTCGAAGACC 59.388 55.000 0.00 0.00 34.32 3.85
637 677 2.467566 TTAAGGCCCTGTTCGAAGAC 57.532 50.000 0.00 0.00 34.32 3.01
638 678 5.365619 GAATATTAAGGCCCTGTTCGAAGA 58.634 41.667 0.00 0.00 0.00 2.87
639 679 4.211374 CGAATATTAAGGCCCTGTTCGAAG 59.789 45.833 14.65 0.00 39.24 3.79
640 680 4.124238 CGAATATTAAGGCCCTGTTCGAA 58.876 43.478 14.65 0.00 39.24 3.71
642 682 3.724374 TCGAATATTAAGGCCCTGTTCG 58.276 45.455 0.00 8.35 38.52 3.95
645 685 4.772886 AACTCGAATATTAAGGCCCTGT 57.227 40.909 0.00 0.00 0.00 4.00
646 686 4.211374 CGAAACTCGAATATTAAGGCCCTG 59.789 45.833 0.00 0.00 43.74 4.45
647 687 4.100498 TCGAAACTCGAATATTAAGGCCCT 59.900 41.667 0.00 0.00 46.90 5.19
648 688 4.374399 TCGAAACTCGAATATTAAGGCCC 58.626 43.478 0.00 0.00 46.90 5.80
663 1017 2.357952 GGCAAACTGGAAACTCGAAACT 59.642 45.455 0.00 0.00 0.00 2.66
669 1023 1.269051 CCAACGGCAAACTGGAAACTC 60.269 52.381 0.00 0.00 31.38 3.01
677 1031 3.504520 CCACTATTAACCAACGGCAAACT 59.495 43.478 0.00 0.00 0.00 2.66
681 1035 2.303600 ACTCCACTATTAACCAACGGCA 59.696 45.455 0.00 0.00 0.00 5.69
682 1036 2.676342 CACTCCACTATTAACCAACGGC 59.324 50.000 0.00 0.00 0.00 5.68
683 1037 3.267483 CCACTCCACTATTAACCAACGG 58.733 50.000 0.00 0.00 0.00 4.44
684 1038 3.682858 CACCACTCCACTATTAACCAACG 59.317 47.826 0.00 0.00 0.00 4.10
685 1039 4.454504 CACACCACTCCACTATTAACCAAC 59.545 45.833 0.00 0.00 0.00 3.77
686 1040 4.505918 CCACACCACTCCACTATTAACCAA 60.506 45.833 0.00 0.00 0.00 3.67
687 1041 3.008594 CCACACCACTCCACTATTAACCA 59.991 47.826 0.00 0.00 0.00 3.67
688 1042 3.008704 ACCACACCACTCCACTATTAACC 59.991 47.826 0.00 0.00 0.00 2.85
689 1043 4.000988 CACCACACCACTCCACTATTAAC 58.999 47.826 0.00 0.00 0.00 2.01
691 1045 2.569853 CCACCACACCACTCCACTATTA 59.430 50.000 0.00 0.00 0.00 0.98
692 1046 1.351017 CCACCACACCACTCCACTATT 59.649 52.381 0.00 0.00 0.00 1.73
693 1047 0.984230 CCACCACACCACTCCACTAT 59.016 55.000 0.00 0.00 0.00 2.12
699 1053 1.466025 TACGGTCCACCACACCACTC 61.466 60.000 0.00 0.00 32.89 3.51
700 1054 1.458020 TACGGTCCACCACACCACT 60.458 57.895 0.00 0.00 32.89 4.00
704 1058 0.038526 CAGTCTACGGTCCACCACAC 60.039 60.000 0.00 0.00 35.14 3.82
705 1059 1.812686 GCAGTCTACGGTCCACCACA 61.813 60.000 0.00 0.00 35.14 4.17
748 1132 1.518056 CGGTGGCATATGTCCCATGC 61.518 60.000 4.54 0.00 46.50 4.06
757 1141 5.331069 ACTACTAGTATTCCGGTGGCATAT 58.669 41.667 2.33 0.00 0.00 1.78
758 1142 4.733165 ACTACTAGTATTCCGGTGGCATA 58.267 43.478 2.33 0.00 0.00 3.14
759 1143 3.573695 ACTACTAGTATTCCGGTGGCAT 58.426 45.455 2.33 0.00 0.00 4.40
765 1149 7.992754 AATACCAGTACTACTAGTATTCCGG 57.007 40.000 11.96 0.00 38.15 5.14
778 1162 8.842358 TTCATTTCTCGAAAAATACCAGTACT 57.158 30.769 0.00 0.00 33.56 2.73
782 1166 9.708222 CAGTATTCATTTCTCGAAAAATACCAG 57.292 33.333 16.07 10.12 36.06 4.00
783 1167 8.181573 GCAGTATTCATTTCTCGAAAAATACCA 58.818 33.333 16.07 0.00 36.06 3.25
784 1168 8.398665 AGCAGTATTCATTTCTCGAAAAATACC 58.601 33.333 16.07 8.08 36.06 2.73
790 1174 8.467598 ACTACTAGCAGTATTCATTTCTCGAAA 58.532 33.333 0.00 0.00 29.08 3.46
804 1188 9.790344 CTACCTTCCTAAATACTACTAGCAGTA 57.210 37.037 5.28 5.28 35.54 2.74
805 1189 7.231115 GCTACCTTCCTAAATACTACTAGCAGT 59.769 40.741 0.31 0.31 0.00 4.40
806 1190 7.230913 TGCTACCTTCCTAAATACTACTAGCAG 59.769 40.741 0.00 0.00 31.57 4.24
807 1191 7.014038 GTGCTACCTTCCTAAATACTACTAGCA 59.986 40.741 0.00 0.00 32.50 3.49
809 1193 7.228308 ACGTGCTACCTTCCTAAATACTACTAG 59.772 40.741 0.00 0.00 0.00 2.57
810 1194 7.056635 ACGTGCTACCTTCCTAAATACTACTA 58.943 38.462 0.00 0.00 0.00 1.82
811 1195 5.890419 ACGTGCTACCTTCCTAAATACTACT 59.110 40.000 0.00 0.00 0.00 2.57
830 1214 7.743400 GGAAAATAGTACTAAGAAACAACGTGC 59.257 37.037 6.70 0.00 0.00 5.34
844 1228 7.676947 ACATGTACACACAGGAAAATAGTACT 58.323 34.615 0.00 0.00 38.76 2.73
845 1229 7.900782 ACATGTACACACAGGAAAATAGTAC 57.099 36.000 0.00 0.00 38.76 2.73
846 1230 7.762615 GCTACATGTACACACAGGAAAATAGTA 59.237 37.037 0.08 0.00 38.76 1.82
847 1231 6.594159 GCTACATGTACACACAGGAAAATAGT 59.406 38.462 0.08 0.00 38.76 2.12
848 1232 6.818644 AGCTACATGTACACACAGGAAAATAG 59.181 38.462 0.08 0.00 38.76 1.73
849 1233 6.707290 AGCTACATGTACACACAGGAAAATA 58.293 36.000 0.08 0.00 38.76 1.40
850 1234 5.560724 AGCTACATGTACACACAGGAAAAT 58.439 37.500 0.08 0.00 38.76 1.82
881 1265 3.059325 GCACGATCAGAGCCATGAATTAC 60.059 47.826 0.00 0.00 31.76 1.89
940 1324 3.841643 ACGAAACTACTCGGTTACATGG 58.158 45.455 0.00 0.00 43.22 3.66
941 1325 3.855950 GGACGAAACTACTCGGTTACATG 59.144 47.826 0.00 0.00 43.22 3.21
942 1326 3.119352 GGGACGAAACTACTCGGTTACAT 60.119 47.826 0.00 0.00 43.22 2.29
945 1329 2.795329 AGGGACGAAACTACTCGGTTA 58.205 47.619 0.00 0.00 43.22 2.85
949 1333 7.664082 TTATAGATAGGGACGAAACTACTCG 57.336 40.000 0.00 0.00 44.50 4.18
955 1339 9.706691 TGATCAATTTATAGATAGGGACGAAAC 57.293 33.333 0.00 0.00 0.00 2.78
1033 1418 3.890705 CGTACTCGTCAAGAATCAAGC 57.109 47.619 0.00 0.00 0.00 4.01
1076 1465 3.661648 GGCTTGGCCTTCCCTCCA 61.662 66.667 3.32 0.00 46.69 3.86
1085 1474 4.143333 TACTCGAGCGGCTTGGCC 62.143 66.667 13.61 0.00 46.75 5.36
1102 1491 2.202743 CGATCCATGTCGGCGTGT 60.203 61.111 8.67 0.00 37.94 4.49
1212 1609 0.673437 TCGCTGTGTGTGTCTCATGA 59.327 50.000 0.00 0.00 0.00 3.07
1229 1626 2.202676 GCTTCCTGGTCTCGCTCG 60.203 66.667 0.00 0.00 0.00 5.03
1233 1633 1.088340 CATGCAGCTTCCTGGTCTCG 61.088 60.000 0.00 0.00 39.54 4.04
1254 1654 2.609459 GTCAATTGCCTGGACAGATACG 59.391 50.000 0.00 0.00 0.00 3.06
1266 1666 1.133790 GTCAGCTGATGGTCAATTGCC 59.866 52.381 21.47 6.27 0.00 4.52
1267 1667 1.202110 CGTCAGCTGATGGTCAATTGC 60.202 52.381 25.59 5.86 0.00 3.56
1268 1668 1.202110 GCGTCAGCTGATGGTCAATTG 60.202 52.381 31.82 0.00 41.01 2.32
1269 1669 1.089920 GCGTCAGCTGATGGTCAATT 58.910 50.000 31.82 0.00 41.01 2.32
1272 1672 1.374631 GTGCGTCAGCTGATGGTCA 60.375 57.895 31.82 21.37 45.42 4.02
1288 1688 1.725641 TATCAGCCTCTGCAAACGTG 58.274 50.000 0.00 0.00 41.13 4.49
1289 1689 2.350522 CTTATCAGCCTCTGCAAACGT 58.649 47.619 0.00 0.00 41.13 3.99
1316 1734 0.454600 CCTCGTACAGCGGCTTCTTA 59.545 55.000 0.00 0.00 41.72 2.10
1675 2146 2.294979 GGGTCAAAGACGGAAAACACT 58.705 47.619 0.00 0.00 32.65 3.55
1677 2148 1.301423 CGGGTCAAAGACGGAAAACA 58.699 50.000 0.00 0.00 32.65 2.83
1835 2359 5.638234 CAGAGTTTTAGTTAGTACCTGTGCC 59.362 44.000 0.00 0.00 0.00 5.01
2069 2634 1.269361 CCCAACACCCGTAAGCAAAAC 60.269 52.381 0.00 0.00 0.00 2.43
2294 10853 6.801575 TGTTTGAAGAAGGAACGCTAAAAAT 58.198 32.000 0.00 0.00 0.00 1.82
2409 10970 7.603024 TGTATAACGGAAAACATACATGTGACA 59.397 33.333 9.11 0.00 41.61 3.58
2460 11045 4.873817 TGTGAAAAGGAATGAAGCACATG 58.126 39.130 0.00 0.00 39.39 3.21
2534 11121 4.142038 TCTTAAAGTCAACCTCCAAAGCC 58.858 43.478 0.00 0.00 0.00 4.35
2549 11136 8.543862 ACCTAATACCAACGACTTTCTTAAAG 57.456 34.615 0.00 0.00 44.10 1.85
2561 11148 3.200483 GGGCACTTACCTAATACCAACG 58.800 50.000 0.00 0.00 0.00 4.10
2649 11236 6.494842 TCAATTTGCTATTTTCTCCATACGC 58.505 36.000 0.00 0.00 0.00 4.42
2655 11242 9.635520 CATGGATATCAATTTGCTATTTTCTCC 57.364 33.333 4.83 0.00 0.00 3.71
2675 11274 7.290061 ACCAACTACATAAGCATAACATGGAT 58.710 34.615 0.00 0.00 0.00 3.41
2868 11472 7.849322 AGTGGGGTTACTTTTCACATAAAAT 57.151 32.000 0.00 0.00 0.00 1.82
2893 11503 5.481473 ACCCTACAATAACGGTTAGACAAGA 59.519 40.000 6.74 0.00 0.00 3.02
2894 11504 5.579511 CACCCTACAATAACGGTTAGACAAG 59.420 44.000 6.74 2.33 0.00 3.16
2901 11511 4.225717 ACATACCACCCTACAATAACGGTT 59.774 41.667 0.00 0.00 0.00 4.44
2937 11547 5.243730 ACTTACAATGAATGGAACCAAGGTG 59.756 40.000 0.00 0.00 0.00 4.00
3034 11662 9.929180 TGTAGAAGTCATATGAAGGCATATAAC 57.071 33.333 7.07 0.00 43.98 1.89
3093 11721 6.491403 AGTTAATGTCATGACTCTGCCTTTTT 59.509 34.615 25.55 8.49 0.00 1.94
3094 11722 6.006449 AGTTAATGTCATGACTCTGCCTTTT 58.994 36.000 25.55 9.36 0.00 2.27
3149 11781 4.101741 GTGCTCCATCTTACTTCCTACCAT 59.898 45.833 0.00 0.00 0.00 3.55
3211 11843 0.393077 AATCCCCTCGAATAGCCGTG 59.607 55.000 0.00 0.00 0.00 4.94
3304 11936 7.638683 GCAATTTCAAATGCATTCTGAAATAGC 59.361 33.333 33.34 24.74 44.85 2.97
3443 12086 9.903682 CCTATTTGAAACTAGCAAATCCATATG 57.096 33.333 9.29 0.00 42.95 1.78
3598 12244 2.011947 GATGTTGCTGCTGCTGTGATA 58.988 47.619 17.00 0.00 40.48 2.15
3833 12504 7.814264 TTAAAATGGTGCCAATTTGTGAAAT 57.186 28.000 12.97 0.00 32.19 2.17
3846 12517 7.064016 TGTCAACAAAAGACTTTAAAATGGTGC 59.936 33.333 9.57 6.66 36.94 5.01
3860 12531 8.945481 ATTTGTTTGATCATGTCAACAAAAGA 57.055 26.923 27.32 14.26 46.14 2.52
3973 12645 2.887152 GACAAGGCCTTCAGTCACATTT 59.113 45.455 24.22 0.00 0.00 2.32
4120 12792 3.050275 GTGCCTTGCTCCACCGAC 61.050 66.667 0.00 0.00 0.00 4.79
4303 12988 1.766496 AGAGAAAGTCCGTTGGTGGAA 59.234 47.619 0.00 0.00 40.44 3.53
4696 13383 0.109226 GCCTTAGCACGACGACTTCT 60.109 55.000 0.00 0.00 39.53 2.85
4854 13541 2.111043 CGTGTGGAGGTGTGGCTT 59.889 61.111 0.00 0.00 0.00 4.35
4965 13653 3.775261 TGTTAGGGTTTGTGTCCTACC 57.225 47.619 0.00 0.00 35.56 3.18
4999 13687 1.002773 GGAGGGCTCCGTTTTTAGTCA 59.997 52.381 0.00 0.00 40.36 3.41
5110 13800 5.013183 CCTCCTCCAAGAAAGAAAGTTAGGA 59.987 44.000 0.00 0.00 0.00 2.94
5143 13833 2.158856 TCATCACCTATTGAGCCTGCTG 60.159 50.000 0.00 0.00 37.77 4.41
5247 13937 7.526142 TTGGAGTTATCTCGCTAGAATATGT 57.474 36.000 0.00 0.00 41.26 2.29
5281 13971 1.469079 GGCAACACGCTTTTCACTGTT 60.469 47.619 0.00 0.00 41.91 3.16
5282 13972 0.100503 GGCAACACGCTTTTCACTGT 59.899 50.000 0.00 0.00 41.91 3.55
5376 14066 5.010012 CCTTGCCTGAAGTGTAGATGTTTTT 59.990 40.000 0.00 0.00 0.00 1.94
5377 14067 4.520492 CCTTGCCTGAAGTGTAGATGTTTT 59.480 41.667 0.00 0.00 0.00 2.43
5378 14068 4.074970 CCTTGCCTGAAGTGTAGATGTTT 58.925 43.478 0.00 0.00 0.00 2.83
5379 14069 3.073062 ACCTTGCCTGAAGTGTAGATGTT 59.927 43.478 0.00 0.00 0.00 2.71
5380 14070 2.639839 ACCTTGCCTGAAGTGTAGATGT 59.360 45.455 0.00 0.00 0.00 3.06
5381 14071 3.340814 ACCTTGCCTGAAGTGTAGATG 57.659 47.619 0.00 0.00 0.00 2.90
5382 14072 4.074970 CAAACCTTGCCTGAAGTGTAGAT 58.925 43.478 0.00 0.00 0.00 1.98
5383 14073 3.476552 CAAACCTTGCCTGAAGTGTAGA 58.523 45.455 0.00 0.00 0.00 2.59
5384 14074 3.904136 CAAACCTTGCCTGAAGTGTAG 57.096 47.619 0.00 0.00 0.00 2.74
5396 14086 5.587388 ATGTATGATTCCTGCAAACCTTG 57.413 39.130 0.00 0.00 0.00 3.61
5397 14087 6.610075 AAATGTATGATTCCTGCAAACCTT 57.390 33.333 0.00 0.00 0.00 3.50
5398 14088 6.183360 CGTAAATGTATGATTCCTGCAAACCT 60.183 38.462 0.00 0.00 0.00 3.50
5399 14089 5.971202 CGTAAATGTATGATTCCTGCAAACC 59.029 40.000 0.00 0.00 0.00 3.27
5400 14090 5.971202 CCGTAAATGTATGATTCCTGCAAAC 59.029 40.000 0.00 0.00 0.00 2.93
5401 14091 5.883115 TCCGTAAATGTATGATTCCTGCAAA 59.117 36.000 0.00 0.00 0.00 3.68
5402 14092 5.432645 TCCGTAAATGTATGATTCCTGCAA 58.567 37.500 0.00 0.00 0.00 4.08
5403 14093 5.029807 TCCGTAAATGTATGATTCCTGCA 57.970 39.130 0.00 0.00 0.00 4.41
5404 14094 6.560253 ATTCCGTAAATGTATGATTCCTGC 57.440 37.500 0.00 0.00 0.00 4.85
5405 14095 7.857389 CACAATTCCGTAAATGTATGATTCCTG 59.143 37.037 0.00 0.00 0.00 3.86
5406 14096 7.468631 GCACAATTCCGTAAATGTATGATTCCT 60.469 37.037 0.00 0.00 0.00 3.36
5407 14097 6.636850 GCACAATTCCGTAAATGTATGATTCC 59.363 38.462 0.00 0.00 0.00 3.01
5408 14098 6.636850 GGCACAATTCCGTAAATGTATGATTC 59.363 38.462 0.00 0.00 0.00 2.52
5409 14099 6.096141 TGGCACAATTCCGTAAATGTATGATT 59.904 34.615 0.00 0.00 31.92 2.57
5410 14100 5.592282 TGGCACAATTCCGTAAATGTATGAT 59.408 36.000 0.00 0.00 31.92 2.45
5411 14101 4.944317 TGGCACAATTCCGTAAATGTATGA 59.056 37.500 0.00 0.00 31.92 2.15
5412 14102 5.242069 TGGCACAATTCCGTAAATGTATG 57.758 39.130 0.00 0.00 31.92 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.