Multiple sequence alignment - TraesCS2B01G096600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G096600 chr2B 100.000 2672 0 0 1466 4137 56786348 56783677 0.000000e+00 4935
1 TraesCS2B01G096600 chr2B 100.000 1073 0 0 1 1073 56787813 56786741 0.000000e+00 1982
2 TraesCS2B01G096600 chr2B 90.207 725 59 9 127 846 56816562 56815845 0.000000e+00 935
3 TraesCS2B01G096600 chr2B 91.824 636 43 6 105 736 56815958 56815328 0.000000e+00 878
4 TraesCS2B01G096600 chr2D 93.399 2530 108 24 1469 3967 34280230 34277729 0.000000e+00 3692
5 TraesCS2B01G096600 chr2D 83.627 568 53 15 105 671 34281459 34280931 7.990000e-137 497
6 TraesCS2B01G096600 chr2D 87.599 379 22 11 676 1038 34280889 34280520 2.300000e-112 416
7 TraesCS2B01G096600 chr2D 81.352 429 64 9 413 833 34281784 34281364 6.630000e-88 335
8 TraesCS2B01G096600 chr2A 94.565 2300 100 9 1485 3773 37242957 37240672 0.000000e+00 3531
9 TraesCS2B01G096600 chr2A 81.614 446 58 17 413 846 37244276 37243843 8.510000e-92 348
10 TraesCS2B01G096600 chr2A 95.312 64 3 0 597 660 37243676 37243613 7.320000e-18 102
11 TraesCS2B01G096600 chr4B 96.364 110 4 0 4 113 652144206 652144097 9.140000e-42 182
12 TraesCS2B01G096600 chr4B 97.115 104 3 0 1 104 594788344 594788447 4.250000e-40 176
13 TraesCS2B01G096600 chr6B 98.990 99 1 0 4 102 666980681 666980583 1.180000e-40 178
14 TraesCS2B01G096600 chr6B 98.020 101 2 0 4 104 473446641 473446541 4.250000e-40 176
15 TraesCS2B01G096600 chr3B 97.087 103 3 0 4 106 590118427 590118325 1.530000e-39 174
16 TraesCS2B01G096600 chr1B 98.000 100 2 0 6 105 585663953 585664052 1.530000e-39 174
17 TraesCS2B01G096600 chr7B 96.190 105 4 0 1 105 439845196 439845300 5.500000e-39 172
18 TraesCS2B01G096600 chr7B 96.970 99 2 1 6 104 110408281 110408378 9.200000e-37 165
19 TraesCS2B01G096600 chr5B 96.154 104 4 0 1 104 583998560 583998663 1.980000e-38 171
20 TraesCS2B01G096600 chr6A 80.272 147 22 6 261 403 65659932 65659789 2.030000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G096600 chr2B 56783677 56787813 4136 True 3458.5 4935 100.00000 1 4137 2 chr2B.!!$R1 4136
1 TraesCS2B01G096600 chr2B 56815328 56816562 1234 True 906.5 935 91.01550 105 846 2 chr2B.!!$R2 741
2 TraesCS2B01G096600 chr2D 34277729 34281784 4055 True 1235.0 3692 86.49425 105 3967 4 chr2D.!!$R1 3862
3 TraesCS2B01G096600 chr2A 37240672 37244276 3604 True 1327.0 3531 90.49700 413 3773 3 chr2A.!!$R1 3360

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.033781 CGTGTCCCTTGTCCGGTTTA 59.966 55.0 0.0 0.0 0.00 2.01 F
112 113 0.179234 TTTCCACGACACTCTTGCCA 59.821 50.0 0.0 0.0 0.00 4.92 F
384 385 0.321653 CGGTGAAACTTGGAGGGGAG 60.322 60.0 0.0 0.0 36.74 4.30 F
2407 3091 0.312416 CCGCCGAATTGTTGGTTCAA 59.688 50.0 0.0 0.0 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1780 2464 0.959372 TGGAGAACTCGTCGAGGGAC 60.959 60.000 25.25 15.32 39.89 4.46 R
2077 2761 2.225963 CGACGAGTCACAGTTAACCTCT 59.774 50.000 0.88 0.00 0.00 3.69 R
2615 3299 2.125912 CGCCGTCTCCAACTCCAG 60.126 66.667 0.00 0.00 0.00 3.86 R
4069 4784 0.034896 TTTGGTCGGAAGTCAGAGCC 59.965 55.000 7.94 1.99 37.68 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.307906 TCCCGTGTCCCTTGTCCG 61.308 66.667 0.00 0.00 0.00 4.79
18 19 4.388499 CCCGTGTCCCTTGTCCGG 62.388 72.222 0.00 0.00 38.39 5.14
19 20 3.622826 CCGTGTCCCTTGTCCGGT 61.623 66.667 0.00 0.00 34.10 5.28
20 21 2.424302 CGTGTCCCTTGTCCGGTT 59.576 61.111 0.00 0.00 0.00 4.44
21 22 1.227734 CGTGTCCCTTGTCCGGTTT 60.228 57.895 0.00 0.00 0.00 3.27
22 23 0.033781 CGTGTCCCTTGTCCGGTTTA 59.966 55.000 0.00 0.00 0.00 2.01
23 24 1.540797 CGTGTCCCTTGTCCGGTTTAA 60.541 52.381 0.00 0.00 0.00 1.52
24 25 1.875514 GTGTCCCTTGTCCGGTTTAAC 59.124 52.381 0.00 0.00 0.00 2.01
25 26 1.202794 TGTCCCTTGTCCGGTTTAACC 60.203 52.381 3.64 3.64 34.05 2.85
26 27 0.401356 TCCCTTGTCCGGTTTAACCC 59.599 55.000 8.72 0.00 33.75 4.11
27 28 0.609957 CCCTTGTCCGGTTTAACCCC 60.610 60.000 8.72 0.00 33.75 4.95
28 29 0.402887 CCTTGTCCGGTTTAACCCCT 59.597 55.000 8.72 0.00 33.75 4.79
29 30 1.202964 CCTTGTCCGGTTTAACCCCTT 60.203 52.381 8.72 0.00 33.75 3.95
30 31 2.589720 CTTGTCCGGTTTAACCCCTTT 58.410 47.619 8.72 0.00 33.75 3.11
31 32 3.498301 CCTTGTCCGGTTTAACCCCTTTA 60.498 47.826 8.72 0.00 33.75 1.85
32 33 3.872459 TGTCCGGTTTAACCCCTTTAA 57.128 42.857 8.72 0.00 33.75 1.52
33 34 3.753815 TGTCCGGTTTAACCCCTTTAAG 58.246 45.455 8.72 0.00 33.75 1.85
34 35 2.489329 GTCCGGTTTAACCCCTTTAAGC 59.511 50.000 8.72 0.00 33.75 3.09
35 36 2.376181 TCCGGTTTAACCCCTTTAAGCT 59.624 45.455 8.72 0.00 33.75 3.74
36 37 3.586618 TCCGGTTTAACCCCTTTAAGCTA 59.413 43.478 8.72 0.00 33.75 3.32
37 38 4.042684 TCCGGTTTAACCCCTTTAAGCTAA 59.957 41.667 8.72 0.00 33.75 3.09
38 39 4.951715 CCGGTTTAACCCCTTTAAGCTAAT 59.048 41.667 8.72 0.00 33.75 1.73
39 40 5.066893 CCGGTTTAACCCCTTTAAGCTAATC 59.933 44.000 8.72 0.00 33.75 1.75
40 41 5.884232 CGGTTTAACCCCTTTAAGCTAATCT 59.116 40.000 8.72 0.00 33.75 2.40
41 42 6.037940 CGGTTTAACCCCTTTAAGCTAATCTC 59.962 42.308 8.72 0.00 33.75 2.75
42 43 6.037940 GGTTTAACCCCTTTAAGCTAATCTCG 59.962 42.308 2.04 0.00 32.80 4.04
43 44 4.838904 AACCCCTTTAAGCTAATCTCGT 57.161 40.909 0.00 0.00 0.00 4.18
44 45 4.838904 ACCCCTTTAAGCTAATCTCGTT 57.161 40.909 0.00 0.00 0.00 3.85
45 46 4.514401 ACCCCTTTAAGCTAATCTCGTTG 58.486 43.478 0.00 0.00 0.00 4.10
46 47 3.312697 CCCCTTTAAGCTAATCTCGTTGC 59.687 47.826 0.00 0.00 0.00 4.17
47 48 3.001330 CCCTTTAAGCTAATCTCGTTGCG 59.999 47.826 0.00 0.00 0.00 4.85
48 49 3.863424 CCTTTAAGCTAATCTCGTTGCGA 59.137 43.478 0.00 0.00 0.00 5.10
49 50 4.508124 CCTTTAAGCTAATCTCGTTGCGAT 59.492 41.667 0.00 0.00 34.61 4.58
50 51 5.389642 TTTAAGCTAATCTCGTTGCGATG 57.610 39.130 0.00 0.00 34.61 3.84
51 52 1.858091 AGCTAATCTCGTTGCGATGG 58.142 50.000 0.00 0.00 34.61 3.51
52 53 0.233332 GCTAATCTCGTTGCGATGGC 59.767 55.000 0.00 0.00 34.61 4.40
53 54 1.858091 CTAATCTCGTTGCGATGGCT 58.142 50.000 0.15 0.00 40.82 4.75
54 55 1.789464 CTAATCTCGTTGCGATGGCTC 59.211 52.381 0.15 0.00 40.82 4.70
55 56 0.811616 AATCTCGTTGCGATGGCTCC 60.812 55.000 0.15 0.00 40.82 4.70
56 57 1.960040 ATCTCGTTGCGATGGCTCCA 61.960 55.000 0.15 0.00 40.82 3.86
57 58 2.434185 TCGTTGCGATGGCTCCAC 60.434 61.111 0.15 0.00 40.82 4.02
58 59 3.853330 CGTTGCGATGGCTCCACG 61.853 66.667 0.15 3.45 40.82 4.94
59 60 2.434185 GTTGCGATGGCTCCACGA 60.434 61.111 0.15 0.00 40.82 4.35
60 61 2.434185 TTGCGATGGCTCCACGAC 60.434 61.111 0.15 6.68 40.82 4.34
61 62 2.942796 TTGCGATGGCTCCACGACT 61.943 57.895 0.15 0.00 40.82 4.18
62 63 1.600511 TTGCGATGGCTCCACGACTA 61.601 55.000 0.15 2.46 40.82 2.59
63 64 1.141019 GCGATGGCTCCACGACTAA 59.859 57.895 12.62 0.00 35.83 2.24
64 65 0.872021 GCGATGGCTCCACGACTAAG 60.872 60.000 12.62 0.00 35.83 2.18
65 66 0.456221 CGATGGCTCCACGACTAAGT 59.544 55.000 0.00 0.00 0.00 2.24
66 67 1.534175 CGATGGCTCCACGACTAAGTC 60.534 57.143 0.00 0.00 0.00 3.01
67 68 0.824759 ATGGCTCCACGACTAAGTCC 59.175 55.000 0.00 0.00 0.00 3.85
68 69 0.251653 TGGCTCCACGACTAAGTCCT 60.252 55.000 0.00 0.00 0.00 3.85
69 70 0.896226 GGCTCCACGACTAAGTCCTT 59.104 55.000 0.00 0.00 0.00 3.36
70 71 1.135053 GGCTCCACGACTAAGTCCTTC 60.135 57.143 0.00 0.00 0.00 3.46
71 72 1.135053 GCTCCACGACTAAGTCCTTCC 60.135 57.143 0.00 0.00 0.00 3.46
72 73 1.132643 CTCCACGACTAAGTCCTTCCG 59.867 57.143 0.00 0.00 0.00 4.30
73 74 0.886563 CCACGACTAAGTCCTTCCGT 59.113 55.000 0.00 0.00 0.00 4.69
74 75 1.271656 CCACGACTAAGTCCTTCCGTT 59.728 52.381 0.00 0.00 0.00 4.44
75 76 2.489329 CCACGACTAAGTCCTTCCGTTA 59.511 50.000 0.00 0.00 0.00 3.18
76 77 3.427233 CCACGACTAAGTCCTTCCGTTAG 60.427 52.174 0.00 0.00 0.00 2.34
77 78 2.751806 ACGACTAAGTCCTTCCGTTAGG 59.248 50.000 0.00 0.00 39.46 2.69
78 79 3.012518 CGACTAAGTCCTTCCGTTAGGA 58.987 50.000 0.00 0.00 46.75 2.94
89 90 3.801114 TCCGTTAGGACATCTGATGTG 57.199 47.619 26.71 11.56 45.03 3.21
90 91 3.096852 TCCGTTAGGACATCTGATGTGT 58.903 45.455 26.71 15.90 45.03 3.72
91 92 3.513912 TCCGTTAGGACATCTGATGTGTT 59.486 43.478 26.71 16.24 45.03 3.32
92 93 4.707934 TCCGTTAGGACATCTGATGTGTTA 59.292 41.667 26.71 15.32 45.03 2.41
93 94 5.362717 TCCGTTAGGACATCTGATGTGTTAT 59.637 40.000 26.71 12.14 45.03 1.89
94 95 6.049149 CCGTTAGGACATCTGATGTGTTATT 58.951 40.000 26.71 10.25 45.03 1.40
95 96 6.538742 CCGTTAGGACATCTGATGTGTTATTT 59.461 38.462 26.71 8.72 45.03 1.40
96 97 7.254455 CCGTTAGGACATCTGATGTGTTATTTC 60.254 40.741 26.71 10.83 45.03 2.17
97 98 7.254455 CGTTAGGACATCTGATGTGTTATTTCC 60.254 40.741 26.71 18.48 45.03 3.13
98 99 6.065976 AGGACATCTGATGTGTTATTTCCA 57.934 37.500 26.71 0.00 45.03 3.53
99 100 5.882557 AGGACATCTGATGTGTTATTTCCAC 59.117 40.000 26.71 8.80 45.03 4.02
100 101 5.220662 GGACATCTGATGTGTTATTTCCACG 60.221 44.000 26.71 0.00 45.03 4.94
101 102 5.487433 ACATCTGATGTGTTATTTCCACGA 58.513 37.500 21.71 0.00 43.01 4.35
102 103 5.351465 ACATCTGATGTGTTATTTCCACGAC 59.649 40.000 21.71 0.00 43.01 4.34
103 104 4.888917 TCTGATGTGTTATTTCCACGACA 58.111 39.130 0.00 0.00 35.56 4.35
104 105 4.688879 TCTGATGTGTTATTTCCACGACAC 59.311 41.667 0.00 0.00 41.97 3.67
105 106 4.637276 TGATGTGTTATTTCCACGACACT 58.363 39.130 6.97 0.00 42.09 3.55
106 107 4.688879 TGATGTGTTATTTCCACGACACTC 59.311 41.667 6.97 3.58 42.09 3.51
107 108 4.330944 TGTGTTATTTCCACGACACTCT 57.669 40.909 6.97 0.00 42.09 3.24
108 109 4.699637 TGTGTTATTTCCACGACACTCTT 58.300 39.130 6.97 0.00 42.09 2.85
109 110 4.509970 TGTGTTATTTCCACGACACTCTTG 59.490 41.667 6.97 0.00 42.09 3.02
110 111 3.496884 TGTTATTTCCACGACACTCTTGC 59.503 43.478 0.00 0.00 0.00 4.01
111 112 1.523758 ATTTCCACGACACTCTTGCC 58.476 50.000 0.00 0.00 0.00 4.52
112 113 0.179234 TTTCCACGACACTCTTGCCA 59.821 50.000 0.00 0.00 0.00 4.92
113 114 0.531974 TTCCACGACACTCTTGCCAC 60.532 55.000 0.00 0.00 0.00 5.01
114 115 1.227527 CCACGACACTCTTGCCACA 60.228 57.895 0.00 0.00 0.00 4.17
115 116 0.813610 CCACGACACTCTTGCCACAA 60.814 55.000 0.00 0.00 0.00 3.33
116 117 1.013596 CACGACACTCTTGCCACAAA 58.986 50.000 0.00 0.00 0.00 2.83
117 118 1.400142 CACGACACTCTTGCCACAAAA 59.600 47.619 0.00 0.00 0.00 2.44
118 119 2.033299 CACGACACTCTTGCCACAAAAT 59.967 45.455 0.00 0.00 0.00 1.82
119 120 3.249799 CACGACACTCTTGCCACAAAATA 59.750 43.478 0.00 0.00 0.00 1.40
120 121 3.880490 ACGACACTCTTGCCACAAAATAA 59.120 39.130 0.00 0.00 0.00 1.40
121 122 4.518970 ACGACACTCTTGCCACAAAATAAT 59.481 37.500 0.00 0.00 0.00 1.28
122 123 5.703592 ACGACACTCTTGCCACAAAATAATA 59.296 36.000 0.00 0.00 0.00 0.98
123 124 6.128282 ACGACACTCTTGCCACAAAATAATAG 60.128 38.462 0.00 0.00 0.00 1.73
124 125 6.128282 CGACACTCTTGCCACAAAATAATAGT 60.128 38.462 0.00 0.00 0.00 2.12
125 126 6.913170 ACACTCTTGCCACAAAATAATAGTG 58.087 36.000 0.00 0.00 35.00 2.74
126 127 6.490040 ACACTCTTGCCACAAAATAATAGTGT 59.510 34.615 0.00 0.00 36.36 3.55
127 128 7.663905 ACACTCTTGCCACAAAATAATAGTGTA 59.336 33.333 0.00 0.00 38.13 2.90
128 129 8.511321 CACTCTTGCCACAAAATAATAGTGTAA 58.489 33.333 0.00 0.00 0.00 2.41
129 130 9.243105 ACTCTTGCCACAAAATAATAGTGTAAT 57.757 29.630 0.00 0.00 0.00 1.89
184 185 3.058639 CCGAAGTTCAAAGCAAGAGGAAG 60.059 47.826 3.32 0.00 0.00 3.46
185 186 3.561725 CGAAGTTCAAAGCAAGAGGAAGT 59.438 43.478 3.32 0.00 0.00 3.01
186 187 4.035675 CGAAGTTCAAAGCAAGAGGAAGTT 59.964 41.667 3.32 0.00 36.05 2.66
205 206 0.323629 TTGCGTTTAGTGGGGAGGAG 59.676 55.000 0.00 0.00 0.00 3.69
225 226 1.134175 GAAGAGAAGAGAGAGGCACCG 59.866 57.143 0.00 0.00 0.00 4.94
282 283 8.811017 AGAGAAAACCTAACCTAAACTACTACC 58.189 37.037 0.00 0.00 0.00 3.18
284 285 7.736691 AGAAAACCTAACCTAAACTACTACCCT 59.263 37.037 0.00 0.00 0.00 4.34
287 288 6.565036 ACCTAACCTAAACTACTACCCTGAA 58.435 40.000 0.00 0.00 0.00 3.02
288 289 6.438741 ACCTAACCTAAACTACTACCCTGAAC 59.561 42.308 0.00 0.00 0.00 3.18
311 312 0.984230 TGCACCGGAATTCTCTTCCT 59.016 50.000 9.46 0.00 36.45 3.36
312 313 1.066143 TGCACCGGAATTCTCTTCCTC 60.066 52.381 9.46 0.00 36.45 3.71
320 321 1.961180 ATTCTCTTCCTCGCCACCGG 61.961 60.000 0.00 0.00 34.56 5.28
364 365 3.879892 GGGAGGCAAATTCATAGACTCAC 59.120 47.826 0.00 0.00 0.00 3.51
366 367 3.535561 AGGCAAATTCATAGACTCACCG 58.464 45.455 0.00 0.00 0.00 4.94
367 368 2.614057 GGCAAATTCATAGACTCACCGG 59.386 50.000 0.00 0.00 0.00 5.28
384 385 0.321653 CGGTGAAACTTGGAGGGGAG 60.322 60.000 0.00 0.00 36.74 4.30
398 399 2.953284 GGGGAGAATTTACCCTAGCC 57.047 55.000 16.74 1.68 44.97 3.93
401 402 1.542767 GGAGAATTTACCCTAGCCGCC 60.543 57.143 0.00 0.00 0.00 6.13
434 435 5.372373 TCTACAATGTGGTTTGATGTGACA 58.628 37.500 0.00 0.00 0.00 3.58
439 440 4.630894 TGTGGTTTGATGTGACAAAGAC 57.369 40.909 0.00 0.00 39.83 3.01
500 502 3.074412 ACAAAGGTGAAGCATAGTTCGG 58.926 45.455 0.00 0.00 0.00 4.30
529 531 7.882179 AGTTACTTACACTTTTAAGGGCATTG 58.118 34.615 0.00 0.00 33.92 2.82
545 548 2.009774 CATTGGTTAGGAGGAAGTGCG 58.990 52.381 0.00 0.00 0.00 5.34
555 558 2.552315 GGAGGAAGTGCGTTCATTCAAA 59.448 45.455 1.46 0.00 36.82 2.69
563 566 1.950472 CGTTCATTCAAACTGTCGCC 58.050 50.000 0.00 0.00 0.00 5.54
564 567 1.531149 CGTTCATTCAAACTGTCGCCT 59.469 47.619 0.00 0.00 0.00 5.52
667 674 2.159435 GGTTTGTCGACTTGCAACAACT 60.159 45.455 17.92 0.00 32.94 3.16
672 685 3.874543 TGTCGACTTGCAACAACTGTATT 59.125 39.130 17.92 0.00 0.00 1.89
750 763 9.860898 AATCTTTCTCTTGCCACAAAATAATAC 57.139 29.630 0.00 0.00 0.00 1.89
824 837 5.470098 GCAAGAGGAAGATTGTGTTTAGTGA 59.530 40.000 0.00 0.00 0.00 3.41
827 840 4.911390 AGGAAGATTGTGTTTAGTGAGGG 58.089 43.478 0.00 0.00 0.00 4.30
828 841 4.597507 AGGAAGATTGTGTTTAGTGAGGGA 59.402 41.667 0.00 0.00 0.00 4.20
836 849 4.281182 TGTGTTTAGTGAGGGAGAGAAGAC 59.719 45.833 0.00 0.00 0.00 3.01
837 850 4.525100 GTGTTTAGTGAGGGAGAGAAGACT 59.475 45.833 0.00 0.00 0.00 3.24
839 852 6.208994 GTGTTTAGTGAGGGAGAGAAGACTAA 59.791 42.308 0.00 0.00 0.00 2.24
840 853 6.434652 TGTTTAGTGAGGGAGAGAAGACTAAG 59.565 42.308 0.00 0.00 29.98 2.18
945 1628 2.972021 TCACTTCATTCACTCACTCCCA 59.028 45.455 0.00 0.00 0.00 4.37
967 1650 3.287954 ATCCAGCAAGGGGAGGGGA 62.288 63.158 0.00 0.00 37.96 4.81
968 1651 2.805827 ATCCAGCAAGGGGAGGGGAA 62.806 60.000 0.00 0.00 37.96 3.97
1047 1731 3.332385 GCCGTCCCCCAAACCCTA 61.332 66.667 0.00 0.00 0.00 3.53
1048 1732 2.995547 CCGTCCCCCAAACCCTAG 59.004 66.667 0.00 0.00 0.00 3.02
1049 1733 2.271173 CGTCCCCCAAACCCTAGC 59.729 66.667 0.00 0.00 0.00 3.42
1050 1734 2.681591 GTCCCCCAAACCCTAGCC 59.318 66.667 0.00 0.00 0.00 3.93
1051 1735 2.615929 TCCCCCAAACCCTAGCCC 60.616 66.667 0.00 0.00 0.00 5.19
1052 1736 3.751018 CCCCCAAACCCTAGCCCC 61.751 72.222 0.00 0.00 0.00 5.80
1053 1737 3.751018 CCCCAAACCCTAGCCCCC 61.751 72.222 0.00 0.00 0.00 5.40
1054 1738 4.123545 CCCAAACCCTAGCCCCCG 62.124 72.222 0.00 0.00 0.00 5.73
1055 1739 4.815108 CCAAACCCTAGCCCCCGC 62.815 72.222 0.00 0.00 0.00 6.13
1056 1740 4.815108 CAAACCCTAGCCCCCGCC 62.815 72.222 0.00 0.00 34.57 6.13
1750 2434 2.023041 GAGCTCTACGACGGCGAC 59.977 66.667 22.49 6.59 41.64 5.19
1954 2638 1.721664 CCATCACCAAGGCGCATCTG 61.722 60.000 10.83 3.33 0.00 2.90
2014 2698 1.218316 GTACACCTTGGAGCTCGGG 59.782 63.158 7.83 12.06 0.00 5.14
2077 2761 4.087892 GGCAGGAGGAGCGCAAGA 62.088 66.667 11.47 0.00 43.02 3.02
2089 2773 1.344763 AGCGCAAGAGAGGTTAACTGT 59.655 47.619 11.47 0.00 43.02 3.55
2407 3091 0.312416 CCGCCGAATTGTTGGTTCAA 59.688 50.000 0.00 0.00 0.00 2.69
2615 3299 3.755378 ACATGAGATTGAGGCAGAACAAC 59.245 43.478 0.00 0.00 0.00 3.32
2710 3394 4.759782 CGGAAGATTCTTACTGGTGTGAT 58.240 43.478 7.05 0.00 0.00 3.06
2728 3412 7.445096 TGGTGTGATATTATCATCAGCGATTTT 59.555 33.333 20.59 0.00 42.04 1.82
2740 3424 2.029728 CAGCGATTTTGACGATGGAGAC 59.970 50.000 0.00 0.00 42.17 3.36
2793 3477 1.067821 GCGGGTGTCTCAGAATAGGAG 59.932 57.143 0.00 0.00 0.00 3.69
2800 3484 3.055819 TGTCTCAGAATAGGAGTGGCAAC 60.056 47.826 0.00 0.00 34.04 4.17
2818 3502 2.447244 ACAAGAAGACGAAGCAGGAG 57.553 50.000 0.00 0.00 0.00 3.69
2820 3504 0.036858 AAGAAGACGAAGCAGGAGGC 60.037 55.000 0.00 0.00 45.30 4.70
2941 3625 4.330074 CCTTCAGTGGATCGTATCAACAAC 59.670 45.833 5.53 0.00 35.60 3.32
2991 3675 1.480137 GGGTCAGACTGAGATCACCAG 59.520 57.143 5.10 12.00 37.64 4.00
2998 3682 2.167487 GACTGAGATCACCAGGAAGTCC 59.833 54.545 16.30 0.00 36.03 3.85
3013 3697 3.243201 GGAAGTCCAAGACTGCAAAAGTG 60.243 47.826 5.13 0.00 42.59 3.16
3022 3706 2.550180 GACTGCAAAAGTGGTCTTCTCC 59.450 50.000 0.00 0.00 40.07 3.71
3085 3769 0.314935 ACAATGCTTTTGGTCCAGCG 59.685 50.000 0.00 0.00 39.04 5.18
3144 3828 0.377203 CAAATTCCTTAGACGGCGCC 59.623 55.000 19.07 19.07 0.00 6.53
3196 3880 8.707938 AGGTAAGCATAATTTTGAGCATTTTC 57.292 30.769 0.00 0.00 0.00 2.29
3198 3882 8.598075 GGTAAGCATAATTTTGAGCATTTTCAG 58.402 33.333 0.00 0.00 0.00 3.02
3199 3883 9.143631 GTAAGCATAATTTTGAGCATTTTCAGT 57.856 29.630 0.00 0.00 0.00 3.41
3216 3900 9.431887 CATTTTCAGTCATTTCCTGATTCATTT 57.568 29.630 0.00 0.00 38.66 2.32
3235 3919 1.176527 TGCTCCTGCCAATTTAGTGC 58.823 50.000 0.00 0.00 38.71 4.40
3237 3921 1.545582 GCTCCTGCCAATTTAGTGCAA 59.454 47.619 0.00 0.00 34.06 4.08
3238 3922 2.029110 GCTCCTGCCAATTTAGTGCAAA 60.029 45.455 0.00 0.00 34.06 3.68
3239 3923 3.578688 CTCCTGCCAATTTAGTGCAAAC 58.421 45.455 0.00 0.00 34.06 2.93
3240 3924 2.298729 TCCTGCCAATTTAGTGCAAACC 59.701 45.455 0.00 0.00 34.06 3.27
3242 3926 3.319755 CTGCCAATTTAGTGCAAACCTG 58.680 45.455 0.00 0.00 34.06 4.00
3243 3927 2.697751 TGCCAATTTAGTGCAAACCTGT 59.302 40.909 0.00 0.00 30.85 4.00
3244 3928 3.891977 TGCCAATTTAGTGCAAACCTGTA 59.108 39.130 0.00 0.00 30.85 2.74
3245 3929 4.526262 TGCCAATTTAGTGCAAACCTGTAT 59.474 37.500 0.00 0.00 30.85 2.29
3246 3930 4.864247 GCCAATTTAGTGCAAACCTGTATG 59.136 41.667 0.00 0.00 0.00 2.39
3259 3943 6.527722 GCAAACCTGTATGAACATTGTACATG 59.472 38.462 0.00 0.00 34.37 3.21
3470 4154 3.692101 TGGTTTAAACTGTGTCTGTGTGG 59.308 43.478 17.50 0.00 0.00 4.17
3472 4156 4.157105 GGTTTAAACTGTGTCTGTGTGGTT 59.843 41.667 17.50 0.00 0.00 3.67
3473 4157 5.354792 GGTTTAAACTGTGTCTGTGTGGTTA 59.645 40.000 17.50 0.00 0.00 2.85
3474 4158 6.457799 GGTTTAAACTGTGTCTGTGTGGTTAG 60.458 42.308 17.50 0.00 0.00 2.34
3475 4159 4.481368 AAACTGTGTCTGTGTGGTTAGA 57.519 40.909 0.00 0.00 0.00 2.10
3476 4160 4.689612 AACTGTGTCTGTGTGGTTAGAT 57.310 40.909 0.00 0.00 0.00 1.98
3477 4161 3.995199 ACTGTGTCTGTGTGGTTAGATG 58.005 45.455 0.00 0.00 0.00 2.90
3478 4162 3.244215 ACTGTGTCTGTGTGGTTAGATGG 60.244 47.826 0.00 0.00 0.00 3.51
3479 4163 2.703536 TGTGTCTGTGTGGTTAGATGGT 59.296 45.455 0.00 0.00 0.00 3.55
3480 4164 3.898741 TGTGTCTGTGTGGTTAGATGGTA 59.101 43.478 0.00 0.00 0.00 3.25
3481 4165 4.243270 GTGTCTGTGTGGTTAGATGGTAC 58.757 47.826 0.00 0.00 0.00 3.34
3514 4198 6.038936 GGTAACTTGTCCTGTTGTATGTTGTT 59.961 38.462 0.00 0.00 0.00 2.83
3536 4220 2.675348 GTCTAGAAGTCATTGCACAGCC 59.325 50.000 0.00 0.00 0.00 4.85
3558 4242 4.451096 CCGTGGATGTTTATGGTACTATGC 59.549 45.833 1.31 0.00 0.00 3.14
3568 4252 8.100791 TGTTTATGGTACTATGCTGTTCTCTTT 58.899 33.333 1.31 0.00 0.00 2.52
3610 4294 3.489229 GCCATGGTTCTCTTTAATTCCGC 60.489 47.826 14.67 0.00 0.00 5.54
3611 4295 3.066760 CCATGGTTCTCTTTAATTCCGCC 59.933 47.826 2.57 0.00 0.00 6.13
3657 4351 3.313274 TTCTTTTGCGACGAGTGTTTC 57.687 42.857 0.00 0.00 0.00 2.78
3666 4360 3.183775 GCGACGAGTGTTTCAATAGTTGT 59.816 43.478 0.00 0.00 0.00 3.32
3677 4371 9.173939 GTGTTTCAATAGTTGTCATTTCAAGAG 57.826 33.333 0.00 0.00 0.00 2.85
3678 4372 9.119418 TGTTTCAATAGTTGTCATTTCAAGAGA 57.881 29.630 0.00 0.00 0.00 3.10
3711 4405 3.635373 AGGATGCAATGCTGAAACATAGG 59.365 43.478 6.82 0.00 46.20 2.57
3744 4438 3.327757 AGGCTGGTCATTAGTTTCAGTCA 59.672 43.478 0.00 0.00 33.04 3.41
3779 4473 8.859236 ATAATTCATGATCACTATTCCACAGG 57.141 34.615 0.00 0.00 0.00 4.00
3780 4474 5.698741 TTCATGATCACTATTCCACAGGT 57.301 39.130 0.00 0.00 0.00 4.00
3781 4475 5.027293 TCATGATCACTATTCCACAGGTG 57.973 43.478 0.00 0.00 0.00 4.00
3782 4476 3.266510 TGATCACTATTCCACAGGTGC 57.733 47.619 0.00 0.00 0.00 5.01
3783 4477 2.840038 TGATCACTATTCCACAGGTGCT 59.160 45.455 0.00 0.00 0.00 4.40
3785 4479 2.256306 TCACTATTCCACAGGTGCTCA 58.744 47.619 0.00 0.00 0.00 4.26
3787 4481 2.027745 CACTATTCCACAGGTGCTCACT 60.028 50.000 0.00 0.00 0.00 3.41
3788 4482 2.639839 ACTATTCCACAGGTGCTCACTT 59.360 45.455 0.00 0.00 0.00 3.16
3789 4483 1.901591 ATTCCACAGGTGCTCACTTG 58.098 50.000 10.08 10.08 43.14 3.16
3791 4485 1.526686 CCACAGGTGCTCACTTGCA 60.527 57.895 11.35 0.00 41.48 4.08
3803 4497 5.389778 TGCTCACTTGCACATATTTTTACG 58.610 37.500 0.00 0.00 38.12 3.18
3804 4498 4.262976 GCTCACTTGCACATATTTTTACGC 59.737 41.667 0.00 0.00 0.00 4.42
3806 4500 5.150683 TCACTTGCACATATTTTTACGCAC 58.849 37.500 0.00 0.00 0.00 5.34
3807 4501 4.914504 CACTTGCACATATTTTTACGCACA 59.085 37.500 0.00 0.00 0.00 4.57
3810 4504 2.275253 GCACATATTTTTACGCACACGC 59.725 45.455 0.00 0.00 45.53 5.34
3811 4505 2.843643 CACATATTTTTACGCACACGCC 59.156 45.455 0.00 0.00 45.53 5.68
3815 4509 0.098376 TTTTTACGCACACGCCGTTT 59.902 45.000 0.00 0.00 45.53 3.60
3816 4510 0.316032 TTTTACGCACACGCCGTTTC 60.316 50.000 0.00 0.00 45.53 2.78
3822 4537 1.082756 CACACGCCGTTTCTCTTGC 60.083 57.895 0.00 0.00 0.00 4.01
3877 4592 0.242825 TAGTTCTGTTCGGCCTCGTG 59.757 55.000 0.00 0.00 37.69 4.35
3896 4611 2.493278 GTGCAATGCAAGGTGATTAGGT 59.507 45.455 10.44 0.00 41.47 3.08
3897 4612 3.694072 GTGCAATGCAAGGTGATTAGGTA 59.306 43.478 10.44 0.00 41.47 3.08
3898 4613 3.947196 TGCAATGCAAGGTGATTAGGTAG 59.053 43.478 5.01 0.00 34.76 3.18
3899 4614 3.316308 GCAATGCAAGGTGATTAGGTAGG 59.684 47.826 0.00 0.00 0.00 3.18
3912 4627 0.325765 AGGTAGGGAGGAAGGTGCTC 60.326 60.000 0.00 0.00 33.75 4.26
3915 4630 0.261991 TAGGGAGGAAGGTGCTCGAT 59.738 55.000 0.00 0.00 35.51 3.59
3942 4657 7.506328 ACTAAACCGAGTTTTTCTTAAGCAT 57.494 32.000 7.22 0.00 37.01 3.79
3978 4693 8.366671 CTCTATTCGAGGGGTGTTTAATTAAG 57.633 38.462 0.00 0.00 36.06 1.85
3979 4694 5.830000 ATTCGAGGGGTGTTTAATTAAGC 57.170 39.130 5.19 5.19 0.00 3.09
3980 4695 3.264104 TCGAGGGGTGTTTAATTAAGCG 58.736 45.455 7.44 0.00 0.00 4.68
3981 4696 3.004862 CGAGGGGTGTTTAATTAAGCGT 58.995 45.455 7.44 0.00 0.00 5.07
3982 4697 3.063045 CGAGGGGTGTTTAATTAAGCGTC 59.937 47.826 7.44 3.80 0.00 5.19
3983 4698 4.259356 GAGGGGTGTTTAATTAAGCGTCT 58.741 43.478 7.44 2.86 0.00 4.18
3984 4699 5.422145 GAGGGGTGTTTAATTAAGCGTCTA 58.578 41.667 7.44 0.00 0.00 2.59
3985 4700 5.181009 AGGGGTGTTTAATTAAGCGTCTAC 58.819 41.667 7.44 0.83 0.00 2.59
3986 4701 5.046087 AGGGGTGTTTAATTAAGCGTCTACT 60.046 40.000 7.44 0.54 0.00 2.57
3987 4702 5.292834 GGGGTGTTTAATTAAGCGTCTACTC 59.707 44.000 7.44 0.74 0.00 2.59
3988 4703 5.292834 GGGTGTTTAATTAAGCGTCTACTCC 59.707 44.000 7.44 7.50 0.00 3.85
3989 4704 5.292834 GGTGTTTAATTAAGCGTCTACTCCC 59.707 44.000 7.44 0.33 0.00 4.30
3990 4705 6.104665 GTGTTTAATTAAGCGTCTACTCCCT 58.895 40.000 7.44 0.00 0.00 4.20
3991 4706 6.035758 GTGTTTAATTAAGCGTCTACTCCCTG 59.964 42.308 7.44 0.00 0.00 4.45
3992 4707 2.892784 ATTAAGCGTCTACTCCCTGC 57.107 50.000 0.00 0.00 0.00 4.85
3993 4708 1.552578 TTAAGCGTCTACTCCCTGCA 58.447 50.000 0.00 0.00 0.00 4.41
3994 4709 1.552578 TAAGCGTCTACTCCCTGCAA 58.447 50.000 0.00 0.00 0.00 4.08
3995 4710 0.247736 AAGCGTCTACTCCCTGCAAG 59.752 55.000 0.00 0.00 0.00 4.01
3996 4711 0.900647 AGCGTCTACTCCCTGCAAGT 60.901 55.000 0.00 0.00 0.00 3.16
3997 4712 0.737715 GCGTCTACTCCCTGCAAGTG 60.738 60.000 0.00 0.00 0.00 3.16
3998 4713 0.888619 CGTCTACTCCCTGCAAGTGA 59.111 55.000 0.00 0.00 0.00 3.41
3999 4714 1.135257 CGTCTACTCCCTGCAAGTGAG 60.135 57.143 0.00 2.90 0.00 3.51
4000 4715 0.898320 TCTACTCCCTGCAAGTGAGC 59.102 55.000 0.00 0.00 0.00 4.26
4001 4716 0.459237 CTACTCCCTGCAAGTGAGCG 60.459 60.000 0.00 0.00 37.31 5.03
4002 4717 2.507110 TACTCCCTGCAAGTGAGCGC 62.507 60.000 0.00 0.00 37.31 5.92
4003 4718 4.704833 TCCCTGCAAGTGAGCGCC 62.705 66.667 2.29 0.00 37.31 6.53
4004 4719 4.711949 CCCTGCAAGTGAGCGCCT 62.712 66.667 2.29 0.00 37.31 5.52
4005 4720 3.429141 CCTGCAAGTGAGCGCCTG 61.429 66.667 2.29 0.00 37.31 4.85
4006 4721 2.667536 CTGCAAGTGAGCGCCTGT 60.668 61.111 2.29 0.00 37.31 4.00
4007 4722 2.962827 CTGCAAGTGAGCGCCTGTG 61.963 63.158 2.29 0.00 37.31 3.66
4008 4723 4.395583 GCAAGTGAGCGCCTGTGC 62.396 66.667 2.29 3.28 0.00 4.57
4016 4731 3.322514 AGCGCCTGTGCTTAAGAAA 57.677 47.368 6.67 0.00 44.46 2.52
4017 4732 1.604604 AGCGCCTGTGCTTAAGAAAA 58.395 45.000 6.67 0.00 44.46 2.29
4018 4733 2.162681 AGCGCCTGTGCTTAAGAAAAT 58.837 42.857 6.67 0.00 44.46 1.82
4019 4734 3.343617 AGCGCCTGTGCTTAAGAAAATA 58.656 40.909 6.67 0.00 44.46 1.40
4020 4735 3.127030 AGCGCCTGTGCTTAAGAAAATAC 59.873 43.478 6.67 0.00 44.46 1.89
4021 4736 3.127030 GCGCCTGTGCTTAAGAAAATACT 59.873 43.478 6.67 0.00 34.43 2.12
4022 4737 4.651994 CGCCTGTGCTTAAGAAAATACTG 58.348 43.478 6.67 1.37 34.43 2.74
4023 4738 4.437390 CGCCTGTGCTTAAGAAAATACTGG 60.437 45.833 6.67 10.24 34.43 4.00
4024 4739 4.459337 GCCTGTGCTTAAGAAAATACTGGT 59.541 41.667 6.67 0.00 32.03 4.00
4025 4740 5.048013 GCCTGTGCTTAAGAAAATACTGGTT 60.048 40.000 6.67 0.00 32.03 3.67
4026 4741 6.516693 GCCTGTGCTTAAGAAAATACTGGTTT 60.517 38.462 6.67 0.00 32.03 3.27
4027 4742 7.308951 GCCTGTGCTTAAGAAAATACTGGTTTA 60.309 37.037 6.67 0.00 32.03 2.01
4028 4743 8.739972 CCTGTGCTTAAGAAAATACTGGTTTAT 58.260 33.333 6.67 0.00 0.00 1.40
4044 4759 8.225603 ACTGGTTTATTTATCTATGCACCTTG 57.774 34.615 0.00 0.00 0.00 3.61
4045 4760 7.038154 TGGTTTATTTATCTATGCACCTTGC 57.962 36.000 0.00 0.00 45.29 4.01
4056 4771 1.917273 GCACCTTGCATTGCATAGTG 58.083 50.000 25.70 25.70 44.26 2.74
4057 4772 1.917273 CACCTTGCATTGCATAGTGC 58.083 50.000 21.44 11.11 45.29 4.40
4069 4784 3.532892 GCATAGTGCATCGGAGAAATG 57.467 47.619 0.00 0.00 44.26 2.32
4070 4785 2.225019 GCATAGTGCATCGGAGAAATGG 59.775 50.000 0.00 0.00 44.26 3.16
4071 4786 1.953559 TAGTGCATCGGAGAAATGGC 58.046 50.000 0.00 0.00 43.58 4.40
4072 4787 0.254178 AGTGCATCGGAGAAATGGCT 59.746 50.000 0.00 0.00 43.58 4.75
4073 4788 0.659957 GTGCATCGGAGAAATGGCTC 59.340 55.000 0.00 0.00 43.58 4.70
4074 4789 0.543277 TGCATCGGAGAAATGGCTCT 59.457 50.000 0.00 0.00 43.58 4.09
4075 4790 0.942962 GCATCGGAGAAATGGCTCTG 59.057 55.000 0.00 0.00 43.58 3.35
4078 4793 1.561643 TCGGAGAAATGGCTCTGACT 58.438 50.000 0.00 0.00 43.48 3.41
4079 4794 1.902508 TCGGAGAAATGGCTCTGACTT 59.097 47.619 0.00 0.00 43.48 3.01
4080 4795 2.093973 TCGGAGAAATGGCTCTGACTTC 60.094 50.000 0.00 0.00 43.48 3.01
4081 4796 2.637947 GGAGAAATGGCTCTGACTTCC 58.362 52.381 0.00 0.00 35.26 3.46
4082 4797 2.275318 GAGAAATGGCTCTGACTTCCG 58.725 52.381 0.00 0.00 32.16 4.30
4083 4798 1.902508 AGAAATGGCTCTGACTTCCGA 59.097 47.619 0.00 0.00 0.00 4.55
4084 4799 2.003301 GAAATGGCTCTGACTTCCGAC 58.997 52.381 0.00 0.00 0.00 4.79
4085 4800 0.250513 AATGGCTCTGACTTCCGACC 59.749 55.000 0.00 0.00 0.00 4.79
4086 4801 0.904865 ATGGCTCTGACTTCCGACCA 60.905 55.000 0.00 0.00 0.00 4.02
4087 4802 1.118965 TGGCTCTGACTTCCGACCAA 61.119 55.000 0.00 0.00 0.00 3.67
4088 4803 0.034896 GGCTCTGACTTCCGACCAAA 59.965 55.000 0.00 0.00 0.00 3.28
4089 4804 1.433534 GCTCTGACTTCCGACCAAAG 58.566 55.000 0.00 0.00 0.00 2.77
4090 4805 1.270358 GCTCTGACTTCCGACCAAAGT 60.270 52.381 0.00 0.00 39.61 2.66
4091 4806 2.408050 CTCTGACTTCCGACCAAAGTG 58.592 52.381 0.00 0.00 37.10 3.16
4092 4807 1.070134 TCTGACTTCCGACCAAAGTGG 59.930 52.381 0.00 0.00 45.02 4.00
4093 4808 1.070134 CTGACTTCCGACCAAAGTGGA 59.930 52.381 0.18 0.00 40.96 4.02
4094 4809 1.697432 TGACTTCCGACCAAAGTGGAT 59.303 47.619 0.18 0.00 40.96 3.41
4095 4810 2.105821 TGACTTCCGACCAAAGTGGATT 59.894 45.455 0.18 0.00 40.96 3.01
4096 4811 2.742589 GACTTCCGACCAAAGTGGATTC 59.257 50.000 0.18 0.00 40.96 2.52
4097 4812 2.105821 ACTTCCGACCAAAGTGGATTCA 59.894 45.455 0.18 0.00 40.96 2.57
4098 4813 2.472695 TCCGACCAAAGTGGATTCAG 57.527 50.000 0.18 0.00 40.96 3.02
4099 4814 1.974957 TCCGACCAAAGTGGATTCAGA 59.025 47.619 0.18 0.00 40.96 3.27
4100 4815 2.370519 TCCGACCAAAGTGGATTCAGAA 59.629 45.455 0.18 0.00 40.96 3.02
4101 4816 3.146066 CCGACCAAAGTGGATTCAGAAA 58.854 45.455 0.18 0.00 40.96 2.52
4102 4817 3.758554 CCGACCAAAGTGGATTCAGAAAT 59.241 43.478 0.18 0.00 40.96 2.17
4103 4818 4.142600 CCGACCAAAGTGGATTCAGAAATC 60.143 45.833 0.18 0.00 40.96 2.17
4104 4819 4.455533 CGACCAAAGTGGATTCAGAAATCA 59.544 41.667 0.18 0.00 42.66 2.57
4105 4820 5.617751 CGACCAAAGTGGATTCAGAAATCAC 60.618 44.000 0.18 9.87 42.66 3.06
4106 4821 5.139727 ACCAAAGTGGATTCAGAAATCACA 58.860 37.500 16.70 0.45 42.66 3.58
4107 4822 5.776716 ACCAAAGTGGATTCAGAAATCACAT 59.223 36.000 16.70 6.59 42.66 3.21
4108 4823 6.071728 ACCAAAGTGGATTCAGAAATCACATC 60.072 38.462 16.70 0.00 42.66 3.06
4109 4824 6.152323 CCAAAGTGGATTCAGAAATCACATCT 59.848 38.462 16.70 3.78 42.66 2.90
4110 4825 7.337689 CCAAAGTGGATTCAGAAATCACATCTA 59.662 37.037 16.70 0.00 42.66 1.98
4111 4826 8.900781 CAAAGTGGATTCAGAAATCACATCTAT 58.099 33.333 16.70 0.00 42.66 1.98
4122 4837 9.926158 CAGAAATCACATCTATATAGAGCAAGT 57.074 33.333 17.22 10.32 35.50 3.16
4123 4838 9.926158 AGAAATCACATCTATATAGAGCAAGTG 57.074 33.333 17.22 19.15 35.50 3.16
4124 4839 9.149225 GAAATCACATCTATATAGAGCAAGTGG 57.851 37.037 23.14 11.49 35.50 4.00
4125 4840 6.596309 TCACATCTATATAGAGCAAGTGGG 57.404 41.667 23.14 16.30 35.50 4.61
4126 4841 5.481824 TCACATCTATATAGAGCAAGTGGGG 59.518 44.000 23.14 13.09 35.50 4.96
4127 4842 5.481824 CACATCTATATAGAGCAAGTGGGGA 59.518 44.000 17.22 0.00 35.50 4.81
4128 4843 5.482175 ACATCTATATAGAGCAAGTGGGGAC 59.518 44.000 17.22 0.00 35.50 4.46
4129 4844 5.340891 TCTATATAGAGCAAGTGGGGACT 57.659 43.478 8.44 0.00 0.00 3.85
4130 4845 5.716979 TCTATATAGAGCAAGTGGGGACTT 58.283 41.667 8.44 0.00 0.00 3.01
4131 4846 6.143915 TCTATATAGAGCAAGTGGGGACTTT 58.856 40.000 8.44 0.00 0.00 2.66
4132 4847 5.717119 ATATAGAGCAAGTGGGGACTTTT 57.283 39.130 0.00 0.00 0.00 2.27
4133 4848 6.824958 ATATAGAGCAAGTGGGGACTTTTA 57.175 37.500 0.00 0.00 0.00 1.52
4134 4849 5.717119 ATAGAGCAAGTGGGGACTTTTAT 57.283 39.130 0.00 0.00 0.00 1.40
4135 4850 6.824958 ATAGAGCAAGTGGGGACTTTTATA 57.175 37.500 0.00 0.00 0.00 0.98
4136 4851 5.717119 AGAGCAAGTGGGGACTTTTATAT 57.283 39.130 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.388499 CCGGACAAGGGACACGGG 62.388 72.222 0.00 0.00 40.79 5.28
6 7 1.527034 GGTTAAACCGGACAAGGGAC 58.473 55.000 9.46 0.00 35.02 4.46
7 8 0.401356 GGGTTAAACCGGACAAGGGA 59.599 55.000 9.46 0.00 39.83 4.20
8 9 0.609957 GGGGTTAAACCGGACAAGGG 60.610 60.000 9.46 0.00 39.83 3.95
9 10 0.402887 AGGGGTTAAACCGGACAAGG 59.597 55.000 9.46 0.00 39.83 3.61
10 11 2.281539 AAGGGGTTAAACCGGACAAG 57.718 50.000 9.46 0.00 39.83 3.16
11 12 2.752075 AAAGGGGTTAAACCGGACAA 57.248 45.000 9.46 0.00 39.83 3.18
12 13 3.753815 CTTAAAGGGGTTAAACCGGACA 58.246 45.455 9.46 0.00 39.83 4.02
13 14 2.489329 GCTTAAAGGGGTTAAACCGGAC 59.511 50.000 9.46 0.00 39.83 4.79
14 15 2.376181 AGCTTAAAGGGGTTAAACCGGA 59.624 45.455 9.46 0.00 39.83 5.14
15 16 2.799017 AGCTTAAAGGGGTTAAACCGG 58.201 47.619 2.75 0.00 39.83 5.28
16 17 5.884232 AGATTAGCTTAAAGGGGTTAAACCG 59.116 40.000 2.75 0.00 39.83 4.44
17 18 6.037940 CGAGATTAGCTTAAAGGGGTTAAACC 59.962 42.308 0.00 0.00 37.60 3.27
18 19 6.596888 ACGAGATTAGCTTAAAGGGGTTAAAC 59.403 38.462 0.00 0.00 31.22 2.01
19 20 6.714278 ACGAGATTAGCTTAAAGGGGTTAAA 58.286 36.000 0.00 0.00 31.22 1.52
20 21 6.303903 ACGAGATTAGCTTAAAGGGGTTAA 57.696 37.500 0.00 0.00 0.00 2.01
21 22 5.945144 ACGAGATTAGCTTAAAGGGGTTA 57.055 39.130 0.00 0.00 0.00 2.85
22 23 4.838904 ACGAGATTAGCTTAAAGGGGTT 57.161 40.909 0.00 0.00 0.00 4.11
23 24 4.514401 CAACGAGATTAGCTTAAAGGGGT 58.486 43.478 0.00 0.00 0.00 4.95
24 25 3.312697 GCAACGAGATTAGCTTAAAGGGG 59.687 47.826 0.00 0.00 0.00 4.79
25 26 3.001330 CGCAACGAGATTAGCTTAAAGGG 59.999 47.826 0.00 0.00 0.00 3.95
26 27 3.863424 TCGCAACGAGATTAGCTTAAAGG 59.137 43.478 0.00 0.00 0.00 3.11
27 28 5.427082 CATCGCAACGAGATTAGCTTAAAG 58.573 41.667 0.00 0.00 39.91 1.85
28 29 4.270084 CCATCGCAACGAGATTAGCTTAAA 59.730 41.667 0.00 0.00 39.91 1.52
29 30 3.802139 CCATCGCAACGAGATTAGCTTAA 59.198 43.478 0.00 0.00 39.91 1.85
30 31 3.381045 CCATCGCAACGAGATTAGCTTA 58.619 45.455 0.00 0.00 39.91 3.09
31 32 2.205074 CCATCGCAACGAGATTAGCTT 58.795 47.619 0.00 0.00 39.91 3.74
32 33 1.858091 CCATCGCAACGAGATTAGCT 58.142 50.000 0.00 0.00 39.91 3.32
33 34 0.233332 GCCATCGCAACGAGATTAGC 59.767 55.000 0.00 0.00 39.91 3.09
34 35 1.789464 GAGCCATCGCAACGAGATTAG 59.211 52.381 0.00 0.00 39.91 1.73
35 36 1.538204 GGAGCCATCGCAACGAGATTA 60.538 52.381 0.00 0.00 39.91 1.75
36 37 0.811616 GGAGCCATCGCAACGAGATT 60.812 55.000 0.00 0.00 39.91 2.40
37 38 1.227380 GGAGCCATCGCAACGAGAT 60.227 57.895 0.00 0.00 39.91 2.75
38 39 2.184322 GGAGCCATCGCAACGAGA 59.816 61.111 0.00 0.00 39.91 4.04
39 40 2.125552 TGGAGCCATCGCAACGAG 60.126 61.111 0.00 0.00 39.91 4.18
40 41 2.434185 GTGGAGCCATCGCAACGA 60.434 61.111 0.00 0.00 41.13 3.85
41 42 3.853330 CGTGGAGCCATCGCAACG 61.853 66.667 0.00 0.00 37.52 4.10
42 43 2.434185 TCGTGGAGCCATCGCAAC 60.434 61.111 0.00 0.00 37.52 4.17
43 44 1.600511 TAGTCGTGGAGCCATCGCAA 61.601 55.000 0.00 0.00 37.52 4.85
44 45 1.600511 TTAGTCGTGGAGCCATCGCA 61.601 55.000 0.00 0.00 37.52 5.10
45 46 0.872021 CTTAGTCGTGGAGCCATCGC 60.872 60.000 0.00 0.00 0.00 4.58
46 47 0.456221 ACTTAGTCGTGGAGCCATCG 59.544 55.000 0.00 0.00 0.00 3.84
47 48 1.202428 GGACTTAGTCGTGGAGCCATC 60.202 57.143 6.27 0.00 32.65 3.51
48 49 0.824759 GGACTTAGTCGTGGAGCCAT 59.175 55.000 6.27 0.00 32.65 4.40
49 50 0.251653 AGGACTTAGTCGTGGAGCCA 60.252 55.000 6.78 0.00 32.65 4.75
50 51 0.896226 AAGGACTTAGTCGTGGAGCC 59.104 55.000 8.39 0.00 32.65 4.70
51 52 1.135053 GGAAGGACTTAGTCGTGGAGC 60.135 57.143 8.39 0.00 32.65 4.70
52 53 1.132643 CGGAAGGACTTAGTCGTGGAG 59.867 57.143 8.39 0.00 32.65 3.86
53 54 1.171308 CGGAAGGACTTAGTCGTGGA 58.829 55.000 8.39 0.00 32.65 4.02
54 55 0.886563 ACGGAAGGACTTAGTCGTGG 59.113 55.000 8.39 4.31 32.65 4.94
55 56 2.719426 AACGGAAGGACTTAGTCGTG 57.281 50.000 8.39 0.00 32.65 4.35
56 57 2.751806 CCTAACGGAAGGACTTAGTCGT 59.248 50.000 6.27 3.84 39.15 4.34
57 58 3.012518 TCCTAACGGAAGGACTTAGTCG 58.987 50.000 6.27 0.00 40.86 4.18
65 66 3.095912 TCAGATGTCCTAACGGAAGGA 57.904 47.619 4.03 4.03 43.58 3.36
66 67 3.133003 ACATCAGATGTCCTAACGGAAGG 59.867 47.826 10.53 0.00 42.08 3.46
67 68 4.115516 CACATCAGATGTCCTAACGGAAG 58.884 47.826 13.53 0.00 42.70 3.46
68 69 3.513912 ACACATCAGATGTCCTAACGGAA 59.486 43.478 13.53 0.00 42.70 4.30
69 70 3.096852 ACACATCAGATGTCCTAACGGA 58.903 45.455 13.53 0.00 42.70 4.69
70 71 3.526931 ACACATCAGATGTCCTAACGG 57.473 47.619 13.53 3.33 42.70 4.44
71 72 7.254455 GGAAATAACACATCAGATGTCCTAACG 60.254 40.741 13.53 4.05 42.70 3.18
72 73 7.552687 TGGAAATAACACATCAGATGTCCTAAC 59.447 37.037 13.53 2.81 42.70 2.34
73 74 7.552687 GTGGAAATAACACATCAGATGTCCTAA 59.447 37.037 13.53 0.36 42.70 2.69
74 75 7.047891 GTGGAAATAACACATCAGATGTCCTA 58.952 38.462 13.53 8.13 42.70 2.94
75 76 5.882557 GTGGAAATAACACATCAGATGTCCT 59.117 40.000 13.53 6.14 42.70 3.85
76 77 5.220662 CGTGGAAATAACACATCAGATGTCC 60.221 44.000 13.53 10.20 42.70 4.02
77 78 5.580691 TCGTGGAAATAACACATCAGATGTC 59.419 40.000 13.53 0.51 42.70 3.06
78 79 5.351465 GTCGTGGAAATAACACATCAGATGT 59.649 40.000 10.53 10.53 46.22 3.06
79 80 5.351189 TGTCGTGGAAATAACACATCAGATG 59.649 40.000 9.03 9.03 38.74 2.90
80 81 5.351465 GTGTCGTGGAAATAACACATCAGAT 59.649 40.000 0.00 0.00 41.24 2.90
81 82 4.688879 GTGTCGTGGAAATAACACATCAGA 59.311 41.667 0.00 0.00 41.24 3.27
82 83 4.690748 AGTGTCGTGGAAATAACACATCAG 59.309 41.667 7.18 0.00 43.43 2.90
83 84 4.637276 AGTGTCGTGGAAATAACACATCA 58.363 39.130 7.18 0.00 43.43 3.07
84 85 4.929808 AGAGTGTCGTGGAAATAACACATC 59.070 41.667 7.18 2.73 43.43 3.06
85 86 4.894784 AGAGTGTCGTGGAAATAACACAT 58.105 39.130 7.18 0.00 43.43 3.21
86 87 4.330944 AGAGTGTCGTGGAAATAACACA 57.669 40.909 7.18 0.00 43.43 3.72
87 88 4.610680 GCAAGAGTGTCGTGGAAATAACAC 60.611 45.833 0.00 0.00 41.77 3.32
88 89 3.496884 GCAAGAGTGTCGTGGAAATAACA 59.503 43.478 0.00 0.00 0.00 2.41
89 90 3.120304 GGCAAGAGTGTCGTGGAAATAAC 60.120 47.826 0.00 0.00 0.00 1.89
90 91 3.071479 GGCAAGAGTGTCGTGGAAATAA 58.929 45.455 0.00 0.00 0.00 1.40
91 92 2.037902 TGGCAAGAGTGTCGTGGAAATA 59.962 45.455 0.00 0.00 29.15 1.40
92 93 1.202758 TGGCAAGAGTGTCGTGGAAAT 60.203 47.619 0.00 0.00 29.15 2.17
93 94 0.179234 TGGCAAGAGTGTCGTGGAAA 59.821 50.000 0.00 0.00 29.15 3.13
94 95 0.531974 GTGGCAAGAGTGTCGTGGAA 60.532 55.000 0.00 0.00 29.15 3.53
95 96 1.069090 GTGGCAAGAGTGTCGTGGA 59.931 57.895 0.00 0.00 29.15 4.02
96 97 0.813610 TTGTGGCAAGAGTGTCGTGG 60.814 55.000 0.00 0.00 29.15 4.94
97 98 1.013596 TTTGTGGCAAGAGTGTCGTG 58.986 50.000 0.00 0.00 29.15 4.35
98 99 1.745232 TTTTGTGGCAAGAGTGTCGT 58.255 45.000 0.00 0.00 29.15 4.34
99 100 4.481930 TTATTTTGTGGCAAGAGTGTCG 57.518 40.909 0.00 0.00 29.15 4.35
100 101 7.023575 CACTATTATTTTGTGGCAAGAGTGTC 58.976 38.462 0.00 0.00 36.16 3.67
101 102 6.490040 ACACTATTATTTTGTGGCAAGAGTGT 59.510 34.615 7.48 7.48 44.33 3.55
102 103 6.913170 ACACTATTATTTTGTGGCAAGAGTG 58.087 36.000 6.37 6.37 42.82 3.51
103 104 8.630054 TTACACTATTATTTTGTGGCAAGAGT 57.370 30.769 0.00 0.00 36.16 3.24
121 122 8.141909 CGATTTGATCCCTCACTAATTACACTA 58.858 37.037 0.00 0.00 0.00 2.74
122 123 6.986817 CGATTTGATCCCTCACTAATTACACT 59.013 38.462 0.00 0.00 0.00 3.55
123 124 6.984474 TCGATTTGATCCCTCACTAATTACAC 59.016 38.462 0.00 0.00 0.00 2.90
124 125 7.119709 TCGATTTGATCCCTCACTAATTACA 57.880 36.000 0.00 0.00 0.00 2.41
125 126 7.360438 GCATCGATTTGATCCCTCACTAATTAC 60.360 40.741 0.00 0.00 34.13 1.89
126 127 6.650807 GCATCGATTTGATCCCTCACTAATTA 59.349 38.462 0.00 0.00 34.13 1.40
127 128 5.471456 GCATCGATTTGATCCCTCACTAATT 59.529 40.000 0.00 0.00 34.13 1.40
128 129 4.999950 GCATCGATTTGATCCCTCACTAAT 59.000 41.667 0.00 0.00 34.13 1.73
129 130 4.101585 AGCATCGATTTGATCCCTCACTAA 59.898 41.667 0.00 0.00 34.13 2.24
130 131 3.643320 AGCATCGATTTGATCCCTCACTA 59.357 43.478 0.00 0.00 34.13 2.74
131 132 2.437281 AGCATCGATTTGATCCCTCACT 59.563 45.455 0.00 0.00 34.13 3.41
143 144 3.069586 TCGGTGATAGGAAAGCATCGATT 59.930 43.478 0.00 0.00 39.89 3.34
184 185 0.879090 CCTCCCCACTAAACGCAAAC 59.121 55.000 0.00 0.00 0.00 2.93
185 186 0.766131 TCCTCCCCACTAAACGCAAA 59.234 50.000 0.00 0.00 0.00 3.68
186 187 0.323629 CTCCTCCCCACTAAACGCAA 59.676 55.000 0.00 0.00 0.00 4.85
205 206 1.134175 CGGTGCCTCTCTCTTCTCTTC 59.866 57.143 0.00 0.00 0.00 2.87
231 232 0.930726 GGATAAATGGGTGGGGTGGA 59.069 55.000 0.00 0.00 0.00 4.02
364 365 1.303317 CCCCTCCAAGTTTCACCGG 60.303 63.158 0.00 0.00 0.00 5.28
366 367 1.064825 TCTCCCCTCCAAGTTTCACC 58.935 55.000 0.00 0.00 0.00 4.02
367 368 2.951229 TTCTCCCCTCCAAGTTTCAC 57.049 50.000 0.00 0.00 0.00 3.18
384 385 2.289506 CCTAGGCGGCTAGGGTAAATTC 60.290 54.545 42.94 0.00 42.02 2.17
397 398 1.481871 TGTAGAAGAACCCTAGGCGG 58.518 55.000 2.05 0.00 0.00 6.13
398 399 3.118738 ACATTGTAGAAGAACCCTAGGCG 60.119 47.826 2.05 0.00 0.00 5.52
401 402 5.422214 ACCACATTGTAGAAGAACCCTAG 57.578 43.478 0.00 0.00 0.00 3.02
434 435 7.998964 TCAAATTTCAACTAGAGAAGGGTCTTT 59.001 33.333 0.00 0.00 32.80 2.52
439 440 6.319911 GGGATCAAATTTCAACTAGAGAAGGG 59.680 42.308 0.00 0.00 0.00 3.95
500 502 7.120138 TGCCCTTAAAAGTGTAAGTAACTATGC 59.880 37.037 0.00 0.00 30.39 3.14
529 531 1.001633 TGAACGCACTTCCTCCTAACC 59.998 52.381 0.00 0.00 0.00 2.85
545 548 3.626028 AAGGCGACAGTTTGAATGAAC 57.374 42.857 0.00 0.00 0.00 3.18
727 740 8.299570 ACAGTATTATTTTGTGGCAAGAGAAAG 58.700 33.333 0.00 0.00 0.00 2.62
729 742 7.759489 ACAGTATTATTTTGTGGCAAGAGAA 57.241 32.000 0.00 0.00 0.00 2.87
750 763 8.781196 CATCAATTGATCCCTCACTAATTACAG 58.219 37.037 18.16 0.00 31.21 2.74
772 785 2.103094 CTCCGGTGATAGGAAAGCATCA 59.897 50.000 0.00 0.00 37.32 3.07
824 837 5.491078 TCTTCTCTCTTAGTCTTCTCTCCCT 59.509 44.000 0.00 0.00 0.00 4.20
827 840 8.041323 TCTTCTCTTCTCTCTTAGTCTTCTCTC 58.959 40.741 0.00 0.00 0.00 3.20
828 841 7.918076 TCTTCTCTTCTCTCTTAGTCTTCTCT 58.082 38.462 0.00 0.00 0.00 3.10
836 849 5.652014 TGCCTTCTCTTCTCTTCTCTCTTAG 59.348 44.000 0.00 0.00 0.00 2.18
837 850 5.575157 TGCCTTCTCTTCTCTTCTCTCTTA 58.425 41.667 0.00 0.00 0.00 2.10
839 852 4.019174 CTGCCTTCTCTTCTCTTCTCTCT 58.981 47.826 0.00 0.00 0.00 3.10
840 853 4.016444 TCTGCCTTCTCTTCTCTTCTCTC 58.984 47.826 0.00 0.00 0.00 3.20
945 1628 1.414061 CCTCCCCTTGCTGGATCGAT 61.414 60.000 0.00 0.00 38.35 3.59
967 1650 3.596459 TAGGGCTTGGCTCCCCCTT 62.596 63.158 13.24 1.20 46.98 3.95
1038 1722 4.815108 GCGGGGGCTAGGGTTTGG 62.815 72.222 0.00 0.00 0.00 3.28
1039 1723 4.815108 GGCGGGGGCTAGGGTTTG 62.815 72.222 0.00 0.00 0.00 2.93
1553 2237 3.647771 GTCCTTGGGGGCGAAGGT 61.648 66.667 8.05 0.00 39.74 3.50
1780 2464 0.959372 TGGAGAACTCGTCGAGGGAC 60.959 60.000 25.25 15.32 39.89 4.46
1954 2638 2.686915 CCTGAACTCATCAAATGCCCTC 59.313 50.000 0.00 0.00 37.67 4.30
1960 2644 3.875369 GCAGACCCCTGAACTCATCAAAT 60.875 47.826 0.00 0.00 43.02 2.32
2077 2761 2.225963 CGACGAGTCACAGTTAACCTCT 59.774 50.000 0.88 0.00 0.00 3.69
2615 3299 2.125912 CGCCGTCTCCAACTCCAG 60.126 66.667 0.00 0.00 0.00 3.86
2662 3346 0.470268 GAGCCGAGTAGATTCCCCCT 60.470 60.000 0.00 0.00 0.00 4.79
2668 3352 1.202428 GCCTTTCGAGCCGAGTAGATT 60.202 52.381 9.00 0.00 37.14 2.40
2710 3394 7.148590 CCATCGTCAAAATCGCTGATGATAATA 60.149 37.037 7.15 0.00 44.19 0.98
2728 3412 2.562738 ACTTGATGTGTCTCCATCGTCA 59.437 45.455 0.00 0.00 43.39 4.35
2793 3477 1.334149 GCTTCGTCTTCTTGTTGCCAC 60.334 52.381 0.00 0.00 0.00 5.01
2800 3484 1.719600 CCTCCTGCTTCGTCTTCTTG 58.280 55.000 0.00 0.00 0.00 3.02
2830 3514 4.262420 GGAAGATCAGTAGAAGCCTCATCC 60.262 50.000 0.00 0.00 0.00 3.51
2911 3595 2.571653 ACGATCCACTGAAGGAATGGAA 59.428 45.455 0.00 0.00 45.47 3.53
2954 3638 1.177401 CCCTCGATGATCGCTCCATA 58.823 55.000 10.45 0.00 40.21 2.74
2991 3675 2.952310 ACTTTTGCAGTCTTGGACTTCC 59.048 45.455 0.00 0.00 41.37 3.46
2998 3682 3.629398 AGAAGACCACTTTTGCAGTCTTG 59.371 43.478 18.28 1.70 46.68 3.02
3013 3697 1.003580 TCAGCATGGTTGGAGAAGACC 59.996 52.381 0.00 0.00 36.16 3.85
3022 3706 1.725665 CTCCGCATCAGCATGGTTG 59.274 57.895 0.00 0.00 42.27 3.77
3061 3745 4.798574 CTGGACCAAAAGCATTGTACTTC 58.201 43.478 0.00 0.00 0.00 3.01
3144 3828 0.174845 TAAGATCGACACCTTGGCCG 59.825 55.000 0.00 0.00 0.00 6.13
3148 3832 3.623060 CCAATGGTAAGATCGACACCTTG 59.377 47.826 12.68 12.78 33.28 3.61
3176 3860 7.380536 TGACTGAAAATGCTCAAAATTATGCT 58.619 30.769 0.00 0.00 0.00 3.79
3196 3880 5.962433 AGCAAATGAATCAGGAAATGACTG 58.038 37.500 0.00 0.00 41.91 3.51
3198 3882 5.126707 AGGAGCAAATGAATCAGGAAATGAC 59.873 40.000 0.00 0.00 41.91 3.06
3199 3883 5.126545 CAGGAGCAAATGAATCAGGAAATGA 59.873 40.000 0.00 0.00 43.70 2.57
3216 3900 1.176527 GCACTAAATTGGCAGGAGCA 58.823 50.000 0.00 0.00 44.61 4.26
3235 3919 7.815641 TCATGTACAATGTTCATACAGGTTTG 58.184 34.615 5.20 0.00 37.77 2.93
3237 3921 7.828717 TCATCATGTACAATGTTCATACAGGTT 59.171 33.333 5.20 0.00 37.77 3.50
3238 3922 7.337938 TCATCATGTACAATGTTCATACAGGT 58.662 34.615 5.20 0.00 37.77 4.00
3239 3923 7.790823 TCATCATGTACAATGTTCATACAGG 57.209 36.000 5.20 0.00 37.77 4.00
3244 3928 8.843262 CCTGTATTCATCATGTACAATGTTCAT 58.157 33.333 0.00 0.00 0.00 2.57
3245 3929 7.282901 CCCTGTATTCATCATGTACAATGTTCA 59.717 37.037 0.00 0.00 0.00 3.18
3246 3930 7.498900 TCCCTGTATTCATCATGTACAATGTTC 59.501 37.037 0.00 0.00 0.00 3.18
3259 3943 2.906354 ACGCAGTTCCCTGTATTCATC 58.094 47.619 0.00 0.00 37.78 2.92
3477 4161 4.237724 GACAAGTTACCAAGGTACGTACC 58.762 47.826 33.16 33.16 46.82 3.34
3478 4162 4.021981 AGGACAAGTTACCAAGGTACGTAC 60.022 45.833 17.56 17.56 0.00 3.67
3479 4163 4.022068 CAGGACAAGTTACCAAGGTACGTA 60.022 45.833 0.00 0.00 0.00 3.57
3480 4164 2.967887 AGGACAAGTTACCAAGGTACGT 59.032 45.455 0.00 0.00 0.00 3.57
3481 4165 3.243975 ACAGGACAAGTTACCAAGGTACG 60.244 47.826 0.00 0.00 0.00 3.67
3514 4198 3.329386 GCTGTGCAATGACTTCTAGACA 58.671 45.455 0.00 0.00 0.00 3.41
3536 4220 5.177511 CAGCATAGTACCATAAACATCCACG 59.822 44.000 0.00 0.00 0.00 4.94
3558 4242 4.142403 TGGAAACACAAGCAAAGAGAACAG 60.142 41.667 0.00 0.00 33.40 3.16
3568 4252 2.360801 GCCTAAACTGGAAACACAAGCA 59.639 45.455 0.00 0.00 35.60 3.91
3610 4294 6.852853 CAGCTATTAAAACATGCATTCTACGG 59.147 38.462 0.00 0.00 0.00 4.02
3611 4295 7.409697 ACAGCTATTAAAACATGCATTCTACG 58.590 34.615 0.00 0.00 0.00 3.51
3657 4351 9.956720 AGTTTTCTCTTGAAATGACAACTATTG 57.043 29.630 0.00 0.00 41.24 1.90
3666 4360 6.486657 CCTACCACAGTTTTCTCTTGAAATGA 59.513 38.462 0.00 0.00 41.24 2.57
3677 4371 4.737054 CATTGCATCCTACCACAGTTTTC 58.263 43.478 0.00 0.00 0.00 2.29
3678 4372 3.056607 GCATTGCATCCTACCACAGTTTT 60.057 43.478 3.15 0.00 0.00 2.43
3681 4375 1.283029 AGCATTGCATCCTACCACAGT 59.717 47.619 11.91 0.00 0.00 3.55
3711 4405 1.244816 GACCAGCCTAACCAACCAAC 58.755 55.000 0.00 0.00 0.00 3.77
3765 4459 2.028112 GTGAGCACCTGTGGAATAGTGA 60.028 50.000 0.00 0.00 31.79 3.41
3780 4474 5.389778 CGTAAAAATATGTGCAAGTGAGCA 58.610 37.500 0.00 0.00 43.35 4.26
3781 4475 4.262976 GCGTAAAAATATGTGCAAGTGAGC 59.737 41.667 0.00 0.00 0.00 4.26
3782 4476 5.283717 GTGCGTAAAAATATGTGCAAGTGAG 59.716 40.000 0.00 0.00 33.67 3.51
3783 4477 5.150683 GTGCGTAAAAATATGTGCAAGTGA 58.849 37.500 0.00 0.00 33.67 3.41
3785 4479 4.915085 GTGTGCGTAAAAATATGTGCAAGT 59.085 37.500 0.00 0.00 33.67 3.16
3787 4481 3.908978 CGTGTGCGTAAAAATATGTGCAA 59.091 39.130 0.00 0.00 33.67 4.08
3788 4482 3.483734 CGTGTGCGTAAAAATATGTGCA 58.516 40.909 0.00 0.00 0.00 4.57
3789 4483 2.275253 GCGTGTGCGTAAAAATATGTGC 59.725 45.455 0.00 0.00 40.81 4.57
3791 4485 2.474856 CGGCGTGTGCGTAAAAATATGT 60.475 45.455 0.00 0.00 44.10 2.29
3792 4486 2.098120 CGGCGTGTGCGTAAAAATATG 58.902 47.619 0.00 0.00 44.10 1.78
3793 4487 1.733360 ACGGCGTGTGCGTAAAAATAT 59.267 42.857 13.76 0.00 44.10 1.28
3795 4489 0.308376 AACGGCGTGTGCGTAAAAAT 59.692 45.000 15.70 0.00 44.10 1.82
3797 4491 0.316032 GAAACGGCGTGTGCGTAAAA 60.316 50.000 15.70 0.00 44.10 1.52
3798 4492 1.152989 AGAAACGGCGTGTGCGTAAA 61.153 50.000 15.70 0.00 44.10 2.01
3799 4493 1.550659 GAGAAACGGCGTGTGCGTAA 61.551 55.000 15.70 0.00 44.10 3.18
3800 4494 2.017783 GAGAAACGGCGTGTGCGTA 61.018 57.895 15.70 0.00 44.10 4.42
3801 4495 3.335534 GAGAAACGGCGTGTGCGT 61.336 61.111 15.70 0.00 44.10 5.24
3802 4496 2.594962 AAGAGAAACGGCGTGTGCG 61.595 57.895 15.70 0.00 44.10 5.34
3803 4497 1.082756 CAAGAGAAACGGCGTGTGC 60.083 57.895 15.70 6.07 41.71 4.57
3804 4498 1.082756 GCAAGAGAAACGGCGTGTG 60.083 57.895 15.70 6.52 0.00 3.82
3806 4500 0.179215 GATGCAAGAGAAACGGCGTG 60.179 55.000 15.70 0.00 0.00 5.34
3807 4501 0.320771 AGATGCAAGAGAAACGGCGT 60.321 50.000 6.77 6.77 0.00 5.68
3810 4504 1.446907 AGCAGATGCAAGAGAAACGG 58.553 50.000 7.68 0.00 45.16 4.44
3811 4505 4.585364 CATAAGCAGATGCAAGAGAAACG 58.415 43.478 7.68 0.00 45.16 3.60
3822 4537 2.756760 ACAAACAGGGCATAAGCAGATG 59.243 45.455 0.00 0.00 44.61 2.90
3877 4592 3.316308 CCTACCTAATCACCTTGCATTGC 59.684 47.826 0.46 0.46 0.00 3.56
3896 4611 0.261991 ATCGAGCACCTTCCTCCCTA 59.738 55.000 0.00 0.00 0.00 3.53
3897 4612 0.261991 TATCGAGCACCTTCCTCCCT 59.738 55.000 0.00 0.00 0.00 4.20
3898 4613 1.120530 TTATCGAGCACCTTCCTCCC 58.879 55.000 0.00 0.00 0.00 4.30
3899 4614 2.168728 AGTTTATCGAGCACCTTCCTCC 59.831 50.000 0.00 0.00 0.00 4.30
3915 4630 8.891720 TGCTTAAGAAAAACTCGGTTTAGTTTA 58.108 29.630 6.67 0.45 46.40 2.01
3942 4657 4.837896 CTCGAATAGAGGTGAGCACATA 57.162 45.455 2.75 0.00 43.20 2.29
3959 4674 3.264104 CGCTTAATTAAACACCCCTCGA 58.736 45.455 0.00 0.00 0.00 4.04
3967 4682 6.103997 CAGGGAGTAGACGCTTAATTAAACA 58.896 40.000 0.00 0.00 0.00 2.83
3968 4683 5.006455 GCAGGGAGTAGACGCTTAATTAAAC 59.994 44.000 0.00 0.00 0.00 2.01
3969 4684 5.114081 GCAGGGAGTAGACGCTTAATTAAA 58.886 41.667 0.00 0.00 0.00 1.52
3970 4685 4.160814 TGCAGGGAGTAGACGCTTAATTAA 59.839 41.667 0.00 0.00 0.00 1.40
3971 4686 3.702548 TGCAGGGAGTAGACGCTTAATTA 59.297 43.478 0.00 0.00 0.00 1.40
3972 4687 2.500098 TGCAGGGAGTAGACGCTTAATT 59.500 45.455 0.00 0.00 0.00 1.40
3973 4688 2.108168 TGCAGGGAGTAGACGCTTAAT 58.892 47.619 0.00 0.00 0.00 1.40
3974 4689 1.552578 TGCAGGGAGTAGACGCTTAA 58.447 50.000 0.00 0.00 0.00 1.85
3975 4690 1.476891 CTTGCAGGGAGTAGACGCTTA 59.523 52.381 0.00 0.00 0.00 3.09
3976 4691 0.247736 CTTGCAGGGAGTAGACGCTT 59.752 55.000 0.00 0.00 0.00 4.68
3977 4692 0.900647 ACTTGCAGGGAGTAGACGCT 60.901 55.000 0.00 0.00 0.00 5.07
3978 4693 0.737715 CACTTGCAGGGAGTAGACGC 60.738 60.000 0.00 0.00 0.00 5.19
3979 4694 0.888619 TCACTTGCAGGGAGTAGACG 59.111 55.000 0.00 0.00 0.00 4.18
3980 4695 2.663826 CTCACTTGCAGGGAGTAGAC 57.336 55.000 0.00 0.00 40.84 2.59
3986 4701 4.704833 GGCGCTCACTTGCAGGGA 62.705 66.667 7.64 0.00 0.00 4.20
3987 4702 4.711949 AGGCGCTCACTTGCAGGG 62.712 66.667 7.64 0.00 0.00 4.45
3988 4703 3.429141 CAGGCGCTCACTTGCAGG 61.429 66.667 7.64 0.00 0.00 4.85
3989 4704 2.667536 ACAGGCGCTCACTTGCAG 60.668 61.111 7.64 0.00 0.00 4.41
3990 4705 2.974148 CACAGGCGCTCACTTGCA 60.974 61.111 7.64 0.00 0.00 4.08
3991 4706 4.395583 GCACAGGCGCTCACTTGC 62.396 66.667 7.64 5.80 0.00 4.01
4001 4716 4.459337 ACCAGTATTTTCTTAAGCACAGGC 59.541 41.667 0.00 0.00 41.61 4.85
4002 4717 6.575162 AACCAGTATTTTCTTAAGCACAGG 57.425 37.500 0.00 0.27 0.00 4.00
4018 4733 9.337396 CAAGGTGCATAGATAAATAAACCAGTA 57.663 33.333 0.00 0.00 0.00 2.74
4019 4734 7.201821 GCAAGGTGCATAGATAAATAAACCAGT 60.202 37.037 0.00 0.00 44.26 4.00
4020 4735 7.141363 GCAAGGTGCATAGATAAATAAACCAG 58.859 38.462 0.00 0.00 44.26 4.00
4021 4736 7.038154 GCAAGGTGCATAGATAAATAAACCA 57.962 36.000 0.00 0.00 44.26 3.67
4037 4752 1.917273 CACTATGCAATGCAAGGTGC 58.083 50.000 22.90 12.15 43.62 5.01
4038 4753 1.917273 GCACTATGCAATGCAAGGTG 58.083 50.000 27.02 27.02 43.62 4.00
4049 4764 2.225019 CCATTTCTCCGATGCACTATGC 59.775 50.000 0.00 0.00 45.29 3.14
4050 4765 2.225019 GCCATTTCTCCGATGCACTATG 59.775 50.000 0.00 0.00 0.00 2.23
4051 4766 2.105477 AGCCATTTCTCCGATGCACTAT 59.895 45.455 0.00 0.00 0.00 2.12
4052 4767 1.486310 AGCCATTTCTCCGATGCACTA 59.514 47.619 0.00 0.00 0.00 2.74
4053 4768 0.254178 AGCCATTTCTCCGATGCACT 59.746 50.000 0.00 0.00 0.00 4.40
4054 4769 0.659957 GAGCCATTTCTCCGATGCAC 59.340 55.000 0.00 0.00 0.00 4.57
4055 4770 0.543277 AGAGCCATTTCTCCGATGCA 59.457 50.000 0.00 0.00 33.66 3.96
4056 4771 0.942962 CAGAGCCATTTCTCCGATGC 59.057 55.000 0.00 0.00 33.66 3.91
4057 4772 2.158986 AGTCAGAGCCATTTCTCCGATG 60.159 50.000 0.00 0.00 33.66 3.84
4058 4773 2.114616 AGTCAGAGCCATTTCTCCGAT 58.885 47.619 0.00 0.00 33.66 4.18
4059 4774 1.561643 AGTCAGAGCCATTTCTCCGA 58.438 50.000 0.00 0.00 33.66 4.55
4060 4775 2.275318 GAAGTCAGAGCCATTTCTCCG 58.725 52.381 0.00 0.00 33.66 4.63
4061 4776 2.637947 GGAAGTCAGAGCCATTTCTCC 58.362 52.381 0.00 0.00 33.66 3.71
4062 4777 2.093973 TCGGAAGTCAGAGCCATTTCTC 60.094 50.000 0.00 0.00 0.00 2.87
4063 4778 1.902508 TCGGAAGTCAGAGCCATTTCT 59.097 47.619 0.00 0.00 0.00 2.52
4064 4779 2.003301 GTCGGAAGTCAGAGCCATTTC 58.997 52.381 0.00 0.00 0.00 2.17
4065 4780 1.339151 GGTCGGAAGTCAGAGCCATTT 60.339 52.381 0.00 0.00 33.53 2.32
4066 4781 0.250513 GGTCGGAAGTCAGAGCCATT 59.749 55.000 0.00 0.00 33.53 3.16
4067 4782 0.904865 TGGTCGGAAGTCAGAGCCAT 60.905 55.000 7.94 0.00 37.68 4.40
4068 4783 1.118965 TTGGTCGGAAGTCAGAGCCA 61.119 55.000 7.94 4.16 37.68 4.75
4069 4784 0.034896 TTTGGTCGGAAGTCAGAGCC 59.965 55.000 7.94 1.99 37.68 4.70
4070 4785 1.270358 ACTTTGGTCGGAAGTCAGAGC 60.270 52.381 4.03 4.03 38.66 4.09
4071 4786 2.408050 CACTTTGGTCGGAAGTCAGAG 58.592 52.381 0.00 0.00 35.26 3.35
4072 4787 1.070134 CCACTTTGGTCGGAAGTCAGA 59.930 52.381 0.00 0.00 35.26 3.27
4073 4788 1.070134 TCCACTTTGGTCGGAAGTCAG 59.930 52.381 0.00 0.00 39.03 3.51
4074 4789 1.124780 TCCACTTTGGTCGGAAGTCA 58.875 50.000 0.00 0.00 39.03 3.41
4075 4790 2.474410 ATCCACTTTGGTCGGAAGTC 57.526 50.000 0.00 0.00 39.03 3.01
4076 4791 2.105821 TGAATCCACTTTGGTCGGAAGT 59.894 45.455 0.00 0.00 39.03 3.01
4077 4792 2.744202 CTGAATCCACTTTGGTCGGAAG 59.256 50.000 0.00 0.00 39.03 3.46
4078 4793 2.370519 TCTGAATCCACTTTGGTCGGAA 59.629 45.455 0.00 0.00 39.03 4.30
4079 4794 1.974957 TCTGAATCCACTTTGGTCGGA 59.025 47.619 0.00 0.00 39.03 4.55
4080 4795 2.472695 TCTGAATCCACTTTGGTCGG 57.527 50.000 0.00 0.00 39.03 4.79
4081 4796 4.455533 TGATTTCTGAATCCACTTTGGTCG 59.544 41.667 0.00 0.00 40.79 4.79
4082 4797 5.241506 TGTGATTTCTGAATCCACTTTGGTC 59.758 40.000 17.52 0.00 40.79 4.02
4083 4798 5.139727 TGTGATTTCTGAATCCACTTTGGT 58.860 37.500 17.52 0.00 40.79 3.67
4084 4799 5.710513 TGTGATTTCTGAATCCACTTTGG 57.289 39.130 17.52 0.00 40.79 3.28
4085 4800 7.154435 AGATGTGATTTCTGAATCCACTTTG 57.846 36.000 17.52 0.00 40.79 2.77
4096 4811 9.926158 ACTTGCTCTATATAGATGTGATTTCTG 57.074 33.333 12.86 0.00 0.00 3.02
4097 4812 9.926158 CACTTGCTCTATATAGATGTGATTTCT 57.074 33.333 12.86 0.00 0.00 2.52
4098 4813 9.149225 CCACTTGCTCTATATAGATGTGATTTC 57.851 37.037 22.71 7.24 0.00 2.17
4099 4814 8.099537 CCCACTTGCTCTATATAGATGTGATTT 58.900 37.037 22.71 4.75 0.00 2.17
4100 4815 7.310921 CCCCACTTGCTCTATATAGATGTGATT 60.311 40.741 22.71 5.88 0.00 2.57
4101 4816 6.155910 CCCCACTTGCTCTATATAGATGTGAT 59.844 42.308 22.71 7.86 0.00 3.06
4102 4817 5.481824 CCCCACTTGCTCTATATAGATGTGA 59.518 44.000 22.71 9.33 0.00 3.58
4103 4818 5.481824 TCCCCACTTGCTCTATATAGATGTG 59.518 44.000 12.86 16.43 0.00 3.21
4104 4819 5.482175 GTCCCCACTTGCTCTATATAGATGT 59.518 44.000 12.86 7.29 0.00 3.06
4105 4820 5.719085 AGTCCCCACTTGCTCTATATAGATG 59.281 44.000 12.86 7.91 0.00 2.90
4106 4821 5.909760 AGTCCCCACTTGCTCTATATAGAT 58.090 41.667 12.86 0.00 0.00 1.98
4107 4822 5.340891 AGTCCCCACTTGCTCTATATAGA 57.659 43.478 11.94 11.94 0.00 1.98
4108 4823 6.426646 AAAGTCCCCACTTGCTCTATATAG 57.573 41.667 3.10 3.10 42.45 1.31
4109 4824 6.824958 AAAAGTCCCCACTTGCTCTATATA 57.175 37.500 0.00 0.00 42.45 0.86
4110 4825 5.717119 AAAAGTCCCCACTTGCTCTATAT 57.283 39.130 0.00 0.00 42.45 0.86
4111 4826 6.824958 ATAAAAGTCCCCACTTGCTCTATA 57.175 37.500 0.00 0.00 42.45 1.31
4112 4827 5.717119 ATAAAAGTCCCCACTTGCTCTAT 57.283 39.130 0.00 0.00 42.45 1.98
4113 4828 6.824958 ATATAAAAGTCCCCACTTGCTCTA 57.175 37.500 0.00 0.00 42.45 2.43
4114 4829 5.717119 ATATAAAAGTCCCCACTTGCTCT 57.283 39.130 0.00 0.00 42.45 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.