Multiple sequence alignment - TraesCS2B01G096100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G096100 chr2B 100.000 6751 0 0 1 6751 56511034 56517784 0.000000e+00 12467.0
1 TraesCS2B01G096100 chr2D 91.961 3844 166 60 2995 6748 34224140 34227930 0.000000e+00 5254.0
2 TraesCS2B01G096100 chr2D 96.896 1063 30 3 1941 3003 34222994 34224053 0.000000e+00 1777.0
3 TraesCS2B01G096100 chr2D 96.491 684 23 1 1178 1861 34222316 34222998 0.000000e+00 1129.0
4 TraesCS2B01G096100 chr2D 92.887 239 15 2 1 238 34220436 34220673 5.010000e-91 346.0
5 TraesCS2B01G096100 chr2D 86.986 292 25 7 233 516 34221516 34221802 3.930000e-82 316.0
6 TraesCS2B01G096100 chr2D 95.745 47 2 0 5045 5091 536428495 536428449 7.260000e-10 76.8
7 TraesCS2B01G096100 chr2D 91.111 45 4 0 505 549 3072538 3072582 2.030000e-05 62.1
8 TraesCS2B01G096100 chr2A 86.813 2002 126 67 3981 5927 37081991 37083909 0.000000e+00 2108.0
9 TraesCS2B01G096100 chr2A 94.333 1147 52 5 728 1861 37077705 37078851 0.000000e+00 1746.0
10 TraesCS2B01G096100 chr2A 89.017 956 48 26 3142 4086 37080977 37081886 0.000000e+00 1131.0
11 TraesCS2B01G096100 chr2A 84.906 1060 87 33 1941 2988 37078847 37079845 0.000000e+00 1003.0
12 TraesCS2B01G096100 chr2A 90.153 457 27 7 6304 6751 37084570 37085017 4.540000e-161 579.0
13 TraesCS2B01G096100 chr2A 85.283 530 55 14 1 518 37077071 37077589 6.000000e-145 525.0
14 TraesCS2B01G096100 chr2A 86.981 361 32 10 5925 6277 37084012 37084365 6.350000e-105 392.0
15 TraesCS2B01G096100 chr2A 85.870 276 23 8 249 518 37056319 37056584 5.160000e-71 279.0
16 TraesCS2B01G096100 chr2A 84.116 277 30 5 743 1007 37042545 37042819 8.690000e-64 255.0
17 TraesCS2B01G096100 chr5D 81.004 279 50 3 59 334 37023010 37023288 1.140000e-52 219.0
18 TraesCS2B01G096100 chr5D 93.878 49 2 1 5045 5093 34074157 34074204 9.390000e-09 73.1
19 TraesCS2B01G096100 chr6B 95.745 94 4 0 1859 1952 599053472 599053379 1.170000e-32 152.0
20 TraesCS2B01G096100 chr3D 94.000 100 6 0 1845 1944 511662766 511662865 1.170000e-32 152.0
21 TraesCS2B01G096100 chr3D 97.059 34 1 0 516 549 171139820 171139787 2.630000e-04 58.4
22 TraesCS2B01G096100 chr7B 94.792 96 5 0 1852 1947 64651171 64651076 4.220000e-32 150.0
23 TraesCS2B01G096100 chr7B 95.455 44 2 0 5045 5088 84987433 84987476 3.380000e-08 71.3
24 TraesCS2B01G096100 chr7B 94.737 38 2 0 512 549 143179584 143179547 7.310000e-05 60.2
25 TraesCS2B01G096100 chr7B 97.059 34 1 0 516 549 505461469 505461436 2.630000e-04 58.4
26 TraesCS2B01G096100 chr5A 95.699 93 2 1 1859 1951 99588660 99588570 1.520000e-31 148.0
27 TraesCS2B01G096100 chr5A 92.157 102 7 1 1844 1945 359042825 359042725 7.060000e-30 143.0
28 TraesCS2B01G096100 chr3B 94.737 95 5 0 1850 1944 222196981 222197075 1.520000e-31 148.0
29 TraesCS2B01G096100 chr3A 93.878 98 6 0 1858 1955 550395210 550395307 1.520000e-31 148.0
30 TraesCS2B01G096100 chr1A 93.137 102 6 1 1856 1956 98249431 98249532 1.520000e-31 148.0
31 TraesCS2B01G096100 chr1A 100.000 28 0 0 546 573 345300232 345300259 1.200000e-02 52.8
32 TraesCS2B01G096100 chr6D 93.814 97 6 0 1849 1945 63329711 63329807 5.460000e-31 147.0
33 TraesCS2B01G096100 chr6D 96.970 33 1 0 517 549 438275699 438275667 1.000000e-03 56.5
34 TraesCS2B01G096100 chr6D 96.970 33 1 0 517 549 453483892 453483924 1.000000e-03 56.5
35 TraesCS2B01G096100 chr6A 93.333 45 3 0 5045 5089 569692787 569692743 4.370000e-07 67.6
36 TraesCS2B01G096100 chr5B 95.238 42 2 0 5047 5088 113687136 113687095 4.370000e-07 67.6
37 TraesCS2B01G096100 chr1D 93.333 45 3 0 5044 5088 485373995 485373951 4.370000e-07 67.6
38 TraesCS2B01G096100 chrUn 90.196 51 4 1 5047 5097 31934795 31934844 1.570000e-06 65.8
39 TraesCS2B01G096100 chr4A 97.143 35 1 0 517 551 668459004 668459038 7.310000e-05 60.2
40 TraesCS2B01G096100 chr4B 96.970 33 1 0 517 549 417133588 417133620 1.000000e-03 56.5
41 TraesCS2B01G096100 chr4B 94.444 36 2 0 517 552 551262953 551262918 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G096100 chr2B 56511034 56517784 6750 False 12467.000000 12467 100.000000 1 6751 1 chr2B.!!$F1 6750
1 TraesCS2B01G096100 chr2D 34220436 34227930 7494 False 1764.400000 5254 93.044200 1 6748 5 chr2D.!!$F2 6747
2 TraesCS2B01G096100 chr2A 37077071 37085017 7946 False 1069.142857 2108 88.212286 1 6751 7 chr2A.!!$F3 6750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
746 1615 0.253610 TGGAACGTGTGAGGGTTGTT 59.746 50.000 0.00 0.00 0.00 2.83 F
788 1657 0.464373 TCTTTGCGGCCCATCTCATC 60.464 55.000 0.00 0.00 0.00 2.92 F
862 1731 1.071471 CAACGTGAGCCCCAAGACT 59.929 57.895 0.00 0.00 0.00 3.24 F
2208 3087 1.378762 GGCAAGGCTACAACCCTCA 59.621 57.895 0.00 0.00 0.00 3.86 F
2287 3166 0.461870 TCACAGTGACACACAGCCAC 60.462 55.000 8.59 0.00 36.74 5.01 F
2288 3167 0.744057 CACAGTGACACACAGCCACA 60.744 55.000 8.59 0.00 36.74 4.17 F
3051 4042 2.341760 CGCGTAGAAACACAGTCTAAGC 59.658 50.000 0.00 8.67 44.59 3.09 F
4749 6867 1.405105 TGTGAAAAGCTGAACAGGTGC 59.595 47.619 7.28 2.01 39.39 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1667 2545 0.394352 GTGGCGGAAATGGACCAGAT 60.394 55.000 0.00 0.00 31.46 2.90 R
1929 2808 0.408700 ACAGGTACTCCCTCCGTTCT 59.591 55.000 0.00 0.00 43.86 3.01 R
2255 3134 1.955778 CACTGTGACAATGGCCAAAGA 59.044 47.619 10.96 0.00 0.00 2.52 R
3019 4010 0.458889 TTCTACGCGCGCCTGTTAAT 60.459 50.000 32.58 10.51 0.00 1.40 R
3392 5263 0.800012 TTTTGGAATGCGGCTCGTAC 59.200 50.000 0.00 0.00 0.00 3.67 R
3961 5840 2.880963 ACGGAAACCACACATTTTGG 57.119 45.000 0.00 0.00 40.32 3.28 R
4966 7088 1.077915 GGCATTCCAAACGGCATTTG 58.922 50.000 0.00 0.00 46.32 2.32 R
5920 8091 0.242825 AGTGCGCTAAAGCTACGTGA 59.757 50.000 9.73 0.00 39.32 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 8.144862 AGGGATTTGCCAAGTTTCAAATATTA 57.855 30.769 10.98 0.00 41.40 0.98
52 53 9.995003 TTTGCCAAGTTTCAAATATTAGACAAT 57.005 25.926 0.00 0.00 0.00 2.71
66 67 6.831664 ATTAGACAATCTATCTGGTTGGGT 57.168 37.500 0.00 0.00 0.00 4.51
103 110 5.048713 GGGAATCTGAAATTAAGGCGTATGG 60.049 44.000 0.00 0.00 0.00 2.74
130 137 6.889722 ACATATAATCCATTATTCGGTTGGGG 59.110 38.462 0.00 0.00 34.91 4.96
145 152 0.909610 TGGGGTGCTAGGGAGTTGAG 60.910 60.000 0.00 0.00 0.00 3.02
205 216 0.642156 TATCTCTTCCTGCCCTCCCA 59.358 55.000 0.00 0.00 0.00 4.37
208 219 0.627986 CTCTTCCTGCCCTCCCAATT 59.372 55.000 0.00 0.00 0.00 2.32
365 1225 9.657419 CCATTACTTTTCTTCATTTAGCCAAAT 57.343 29.630 0.00 0.00 34.60 2.32
381 1241 2.095263 CCAAATGCGTTGTAAGGGTCAG 60.095 50.000 0.00 0.00 35.23 3.51
428 1288 7.094720 GGGATTTGTTCATTGATGCAAATTTGA 60.095 33.333 22.31 7.50 40.34 2.69
432 1292 6.289834 TGTTCATTGATGCAAATTTGAGGTT 58.710 32.000 22.31 2.54 0.00 3.50
463 1323 5.536161 TGGACTTCTTCTTCCATCCTTTTTG 59.464 40.000 0.00 0.00 36.96 2.44
464 1324 5.770162 GGACTTCTTCTTCCATCCTTTTTGA 59.230 40.000 0.00 0.00 0.00 2.69
465 1325 6.072230 GGACTTCTTCTTCCATCCTTTTTGAG 60.072 42.308 0.00 0.00 0.00 3.02
466 1326 6.368805 ACTTCTTCTTCCATCCTTTTTGAGT 58.631 36.000 0.00 0.00 0.00 3.41
468 1328 5.694995 TCTTCTTCCATCCTTTTTGAGTGT 58.305 37.500 0.00 0.00 0.00 3.55
472 1332 5.765182 TCTTCCATCCTTTTTGAGTGTTCTC 59.235 40.000 0.00 0.00 40.79 2.87
476 1336 6.263168 TCCATCCTTTTTGAGTGTTCTCTTTC 59.737 38.462 0.00 0.00 40.98 2.62
477 1337 6.039717 CCATCCTTTTTGAGTGTTCTCTTTCA 59.960 38.462 0.00 0.00 40.98 2.69
478 1338 7.255730 CCATCCTTTTTGAGTGTTCTCTTTCAT 60.256 37.037 0.00 0.00 40.98 2.57
518 1385 8.290663 GCAATAGGCTCATCATTGAATTTTAC 57.709 34.615 11.04 0.00 40.25 2.01
519 1386 7.922278 GCAATAGGCTCATCATTGAATTTTACA 59.078 33.333 11.04 0.00 40.25 2.41
520 1387 9.241317 CAATAGGCTCATCATTGAATTTTACAC 57.759 33.333 2.22 0.00 32.54 2.90
521 1388 6.212888 AGGCTCATCATTGAATTTTACACC 57.787 37.500 0.00 0.00 0.00 4.16
523 1390 5.127682 GGCTCATCATTGAATTTTACACCCT 59.872 40.000 0.00 0.00 0.00 4.34
524 1391 6.351286 GGCTCATCATTGAATTTTACACCCTT 60.351 38.462 0.00 0.00 0.00 3.95
525 1392 6.753744 GCTCATCATTGAATTTTACACCCTTC 59.246 38.462 0.00 0.00 0.00 3.46
526 1393 6.851609 TCATCATTGAATTTTACACCCTTCG 58.148 36.000 0.00 0.00 0.00 3.79
527 1394 6.432783 TCATCATTGAATTTTACACCCTTCGT 59.567 34.615 0.00 0.00 0.00 3.85
528 1395 6.249035 TCATTGAATTTTACACCCTTCGTC 57.751 37.500 0.00 0.00 0.00 4.20
529 1396 5.182380 TCATTGAATTTTACACCCTTCGTCC 59.818 40.000 0.00 0.00 0.00 4.79
531 1398 3.181442 TGAATTTTACACCCTTCGTCCCA 60.181 43.478 0.00 0.00 0.00 4.37
532 1399 3.732048 ATTTTACACCCTTCGTCCCAT 57.268 42.857 0.00 0.00 0.00 4.00
533 1400 4.847990 ATTTTACACCCTTCGTCCCATA 57.152 40.909 0.00 0.00 0.00 2.74
534 1401 4.637387 TTTTACACCCTTCGTCCCATAA 57.363 40.909 0.00 0.00 0.00 1.90
535 1402 4.847990 TTTACACCCTTCGTCCCATAAT 57.152 40.909 0.00 0.00 0.00 1.28
536 1403 5.954153 TTTACACCCTTCGTCCCATAATA 57.046 39.130 0.00 0.00 0.00 0.98
537 1404 6.503560 TTTACACCCTTCGTCCCATAATAT 57.496 37.500 0.00 0.00 0.00 1.28
538 1405 7.615039 TTTACACCCTTCGTCCCATAATATA 57.385 36.000 0.00 0.00 0.00 0.86
539 1406 7.615039 TTACACCCTTCGTCCCATAATATAA 57.385 36.000 0.00 0.00 0.00 0.98
540 1407 6.110411 ACACCCTTCGTCCCATAATATAAG 57.890 41.667 0.00 0.00 0.00 1.73
541 1408 5.842328 ACACCCTTCGTCCCATAATATAAGA 59.158 40.000 0.00 0.00 0.00 2.10
542 1409 6.014499 ACACCCTTCGTCCCATAATATAAGAG 60.014 42.308 0.00 0.00 0.00 2.85
543 1410 6.014499 CACCCTTCGTCCCATAATATAAGAGT 60.014 42.308 0.00 0.00 0.00 3.24
544 1411 6.014499 ACCCTTCGTCCCATAATATAAGAGTG 60.014 42.308 0.00 0.00 0.00 3.51
545 1412 6.014499 CCCTTCGTCCCATAATATAAGAGTGT 60.014 42.308 0.00 0.00 0.00 3.55
546 1413 7.442656 CCTTCGTCCCATAATATAAGAGTGTT 58.557 38.462 0.00 0.00 0.00 3.32
547 1414 7.931948 CCTTCGTCCCATAATATAAGAGTGTTT 59.068 37.037 0.00 0.00 0.00 2.83
548 1415 9.326413 CTTCGTCCCATAATATAAGAGTGTTTT 57.674 33.333 0.00 0.00 0.00 2.43
549 1416 8.657074 TCGTCCCATAATATAAGAGTGTTTTG 57.343 34.615 0.00 0.00 0.00 2.44
550 1417 7.713507 TCGTCCCATAATATAAGAGTGTTTTGG 59.286 37.037 0.00 0.00 0.00 3.28
551 1418 7.041372 CGTCCCATAATATAAGAGTGTTTTGGG 60.041 40.741 6.24 6.24 41.41 4.12
552 1419 7.996644 GTCCCATAATATAAGAGTGTTTTGGGA 59.003 37.037 9.98 9.98 44.31 4.37
553 1420 7.996644 TCCCATAATATAAGAGTGTTTTGGGAC 59.003 37.037 9.98 0.00 42.81 4.46
554 1421 7.041372 CCCATAATATAAGAGTGTTTTGGGACG 60.041 40.741 6.62 0.00 42.13 4.79
555 1422 7.713507 CCATAATATAAGAGTGTTTTGGGACGA 59.286 37.037 0.00 0.00 0.00 4.20
556 1423 9.104965 CATAATATAAGAGTGTTTTGGGACGAA 57.895 33.333 0.00 0.00 0.00 3.85
557 1424 7.611213 AATATAAGAGTGTTTTGGGACGAAG 57.389 36.000 0.00 0.00 0.00 3.79
558 1425 2.256117 AGAGTGTTTTGGGACGAAGG 57.744 50.000 0.00 0.00 0.00 3.46
559 1426 1.202770 AGAGTGTTTTGGGACGAAGGG 60.203 52.381 0.00 0.00 0.00 3.95
560 1427 0.841289 AGTGTTTTGGGACGAAGGGA 59.159 50.000 0.00 0.00 0.00 4.20
561 1428 1.202770 AGTGTTTTGGGACGAAGGGAG 60.203 52.381 0.00 0.00 0.00 4.30
562 1429 0.841289 TGTTTTGGGACGAAGGGAGT 59.159 50.000 0.00 0.00 0.00 3.85
563 1430 2.048601 TGTTTTGGGACGAAGGGAGTA 58.951 47.619 0.00 0.00 0.00 2.59
581 1448 4.321675 GGAGTAATTGTTTGTTTGGCCGAT 60.322 41.667 0.00 0.00 0.00 4.18
588 1455 5.554822 TGTTTGTTTGGCCGATCTTATAC 57.445 39.130 0.00 0.00 0.00 1.47
694 1563 7.669089 TTTTTGAGTTATTTTGAGGGGAACT 57.331 32.000 0.00 0.00 33.14 3.01
695 1564 7.669089 TTTTGAGTTATTTTGAGGGGAACTT 57.331 32.000 0.00 0.00 30.66 2.66
696 1565 7.669089 TTTGAGTTATTTTGAGGGGAACTTT 57.331 32.000 0.00 0.00 30.66 2.66
697 1566 7.669089 TTGAGTTATTTTGAGGGGAACTTTT 57.331 32.000 0.00 0.00 30.66 2.27
698 1567 7.669089 TGAGTTATTTTGAGGGGAACTTTTT 57.331 32.000 0.00 0.00 30.66 1.94
728 1597 9.696572 AGATCATTGAGGGGAATAATTATGATG 57.303 33.333 0.00 0.00 33.12 3.07
729 1598 8.834004 ATCATTGAGGGGAATAATTATGATGG 57.166 34.615 0.00 0.00 32.10 3.51
730 1599 7.999042 TCATTGAGGGGAATAATTATGATGGA 58.001 34.615 0.00 0.00 0.00 3.41
731 1600 8.455309 TCATTGAGGGGAATAATTATGATGGAA 58.545 33.333 0.00 0.00 0.00 3.53
732 1601 8.526147 CATTGAGGGGAATAATTATGATGGAAC 58.474 37.037 0.00 0.00 0.00 3.62
733 1602 6.237901 TGAGGGGAATAATTATGATGGAACG 58.762 40.000 0.00 0.00 0.00 3.95
734 1603 6.183361 TGAGGGGAATAATTATGATGGAACGT 60.183 38.462 0.00 0.00 0.00 3.99
735 1604 6.003950 AGGGGAATAATTATGATGGAACGTG 58.996 40.000 0.00 0.00 0.00 4.49
736 1605 5.768164 GGGGAATAATTATGATGGAACGTGT 59.232 40.000 0.00 0.00 0.00 4.49
746 1615 0.253610 TGGAACGTGTGAGGGTTGTT 59.746 50.000 0.00 0.00 0.00 2.83
784 1653 1.106285 GAATTCTTTGCGGCCCATCT 58.894 50.000 0.00 0.00 0.00 2.90
788 1657 0.464373 TCTTTGCGGCCCATCTCATC 60.464 55.000 0.00 0.00 0.00 2.92
817 1686 1.741770 GGTAACAGCCAGTCAGCCG 60.742 63.158 0.00 0.00 0.00 5.52
862 1731 1.071471 CAACGTGAGCCCCAAGACT 59.929 57.895 0.00 0.00 0.00 3.24
929 1798 1.758906 CTCCTCCTCCTTCCCCGTC 60.759 68.421 0.00 0.00 0.00 4.79
954 1823 2.294078 CCTCCACTCCACCAGTCCC 61.294 68.421 0.00 0.00 30.26 4.46
1170 2039 3.866582 CTCGCTCCCCATCCCCAC 61.867 72.222 0.00 0.00 0.00 4.61
1444 2322 3.445805 GCCTACCTAGCATATCTCACTCC 59.554 52.174 0.00 0.00 0.00 3.85
1452 2330 4.411927 AGCATATCTCACTCCTCCGTATT 58.588 43.478 0.00 0.00 0.00 1.89
1456 2334 6.294564 GCATATCTCACTCCTCCGTATTGTTA 60.295 42.308 0.00 0.00 0.00 2.41
1457 2335 7.577807 GCATATCTCACTCCTCCGTATTGTTAT 60.578 40.741 0.00 0.00 0.00 1.89
1462 2340 3.135895 ACTCCTCCGTATTGTTATTGGGG 59.864 47.826 0.00 0.00 0.00 4.96
1477 2355 2.124695 GGGTTCGGGGCTCATCAC 60.125 66.667 0.00 0.00 0.00 3.06
1662 2540 5.836024 TCCCTGTTTATCACTTGGTTACT 57.164 39.130 0.00 0.00 0.00 2.24
1667 2545 7.446013 CCCTGTTTATCACTTGGTTACTGTTTA 59.554 37.037 0.00 0.00 0.00 2.01
1805 2683 6.879458 GTCAGTCCACATTTGTTATCTAAGGT 59.121 38.462 0.00 0.00 0.00 3.50
1824 2702 9.174166 TCTAAGGTTGAAGATTTTAATAGGCAC 57.826 33.333 0.00 0.00 0.00 5.01
1869 2748 3.679824 CTTGAAAAGTACTCCCTCCGT 57.320 47.619 0.00 0.00 39.70 4.69
1870 2749 4.004196 CTTGAAAAGTACTCCCTCCGTT 57.996 45.455 0.00 0.00 39.70 4.44
1871 2750 3.672767 TGAAAAGTACTCCCTCCGTTC 57.327 47.619 0.00 0.00 0.00 3.95
1872 2751 2.301009 TGAAAAGTACTCCCTCCGTTCC 59.699 50.000 0.00 0.00 0.00 3.62
1873 2752 2.019807 AAAGTACTCCCTCCGTTCCA 57.980 50.000 0.00 0.00 0.00 3.53
1874 2753 2.019807 AAGTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
1875 2754 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
1876 2755 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
1877 2756 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
1878 2757 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
1879 2758 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1880 2759 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1881 2760 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1882 2761 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1883 2762 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1884 2763 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1885 2764 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
1886 2765 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
1887 2766 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
1888 2767 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
1889 2768 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
1890 2769 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
1891 2770 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
1892 2771 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
1893 2772 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
1894 2773 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
1895 2774 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
1896 2775 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
1897 2776 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
1936 2815 9.667107 AAATTGAGTCATCTATTTTAGAACGGA 57.333 29.630 0.00 0.00 37.52 4.69
1937 2816 8.879342 ATTGAGTCATCTATTTTAGAACGGAG 57.121 34.615 0.00 0.00 38.50 4.63
1938 2817 6.806751 TGAGTCATCTATTTTAGAACGGAGG 58.193 40.000 0.00 0.00 38.50 4.30
1939 2818 6.163135 AGTCATCTATTTTAGAACGGAGGG 57.837 41.667 0.00 0.00 38.50 4.30
1940 2819 5.897824 AGTCATCTATTTTAGAACGGAGGGA 59.102 40.000 0.00 0.00 38.50 4.20
1941 2820 6.041069 AGTCATCTATTTTAGAACGGAGGGAG 59.959 42.308 0.00 0.00 38.50 4.30
1942 2821 5.897824 TCATCTATTTTAGAACGGAGGGAGT 59.102 40.000 0.00 0.00 38.50 3.85
1943 2822 7.014038 GTCATCTATTTTAGAACGGAGGGAGTA 59.986 40.741 0.00 0.00 38.50 2.59
1944 2823 6.705863 TCTATTTTAGAACGGAGGGAGTAC 57.294 41.667 0.00 0.00 0.00 2.73
2019 2898 7.807977 TCTCTTTATTCAGTGGCCATTTATC 57.192 36.000 9.72 0.00 0.00 1.75
2025 2904 3.289836 TCAGTGGCCATTTATCATGTGG 58.710 45.455 9.72 0.00 36.09 4.17
2039 2918 7.801716 TTATCATGTGGAATGTAGTTAAGCC 57.198 36.000 0.00 0.00 0.00 4.35
2126 3005 4.826733 TGTTCAAGCCAAGTCACATTGTAT 59.173 37.500 0.00 0.00 0.00 2.29
2141 3020 7.653713 GTCACATTGTATCGAGATAACTTGGAT 59.346 37.037 0.00 0.00 0.00 3.41
2144 3023 9.477484 ACATTGTATCGAGATAACTTGGATTAC 57.523 33.333 0.00 0.00 0.00 1.89
2208 3087 1.378762 GGCAAGGCTACAACCCTCA 59.621 57.895 0.00 0.00 0.00 3.86
2255 3134 6.924060 GCTCGATACATGACTTATTTAGTGGT 59.076 38.462 0.00 0.00 37.17 4.16
2287 3166 0.461870 TCACAGTGACACACAGCCAC 60.462 55.000 8.59 0.00 36.74 5.01
2288 3167 0.744057 CACAGTGACACACAGCCACA 60.744 55.000 8.59 0.00 36.74 4.17
2349 3228 4.846779 AGTGCAAAACATGTAACGGATT 57.153 36.364 0.00 0.00 0.00 3.01
2360 3239 4.274602 TGTAACGGATTAACTGCCTTCA 57.725 40.909 0.00 0.00 0.00 3.02
2526 3408 5.698545 GCTAGGGCACATTTATACTTCTCAG 59.301 44.000 0.00 0.00 38.54 3.35
2586 3468 5.698832 TCAACACAAGTTCACTGTTTTCTG 58.301 37.500 0.00 0.00 35.28 3.02
2594 3476 7.595130 ACAAGTTCACTGTTTTCTGTTCTTTTC 59.405 33.333 0.00 0.00 0.00 2.29
2644 3526 7.772166 TGATTATAGCTCCATAGTCGGTTATG 58.228 38.462 0.00 1.52 0.00 1.90
2645 3527 7.396339 TGATTATAGCTCCATAGTCGGTTATGT 59.604 37.037 0.00 0.00 30.65 2.29
2709 3599 6.942976 TCATTCTTTAGTGTGTTACTAGGGG 58.057 40.000 0.00 0.00 42.57 4.79
2978 3868 9.689976 CTGATTTGATACAGTATACTTCCTGAG 57.310 37.037 1.56 0.00 32.93 3.35
2989 3879 8.356657 CAGTATACTTCCTGAGTCTTTATCTGG 58.643 40.741 1.56 0.00 39.86 3.86
2990 3880 8.062536 AGTATACTTCCTGAGTCTTTATCTGGT 58.937 37.037 0.00 0.00 39.86 4.00
2991 3881 9.352191 GTATACTTCCTGAGTCTTTATCTGGTA 57.648 37.037 0.00 0.00 39.86 3.25
2992 3882 8.840200 ATACTTCCTGAGTCTTTATCTGGTAA 57.160 34.615 0.00 0.00 39.86 2.85
2993 3883 6.937392 ACTTCCTGAGTCTTTATCTGGTAAC 58.063 40.000 0.00 0.00 37.16 2.50
2998 3989 7.672660 TCCTGAGTCTTTATCTGGTAACTGTTA 59.327 37.037 0.00 0.00 37.16 2.41
3029 4020 6.861065 AAGGTGATACAATATTAACAGGCG 57.139 37.500 0.00 0.00 0.00 5.52
3051 4042 2.341760 CGCGTAGAAACACAGTCTAAGC 59.658 50.000 0.00 8.67 44.59 3.09
3093 4085 4.943093 AGCAACAACAGGCAAGAAAATTTT 59.057 33.333 2.28 2.28 0.00 1.82
3106 4098 6.360414 GCAAGAAAATTTTGGCAATTGTAAGC 59.640 34.615 8.47 0.00 0.00 3.09
3148 5017 8.534954 ACCACTAGCTATTTCTGTAATACTCA 57.465 34.615 0.00 0.00 0.00 3.41
3293 5163 7.232737 AGCCTTTAACCTTGTAATTTACAGCTT 59.767 33.333 9.10 5.41 40.24 3.74
3363 5233 3.069443 GTGAGGTTTGCCCTTTCATTTCA 59.931 43.478 0.00 0.00 46.51 2.69
3435 5314 4.785301 ACTACATAAATCCAGCTGCATGT 58.215 39.130 8.66 13.36 0.00 3.21
3588 5467 8.980481 AGGGTGGACTTGATTTTATTATACTG 57.020 34.615 0.00 0.00 0.00 2.74
3837 5716 4.513442 GGAAAAAGCTTTTCCAGTTGGTT 58.487 39.130 24.04 5.81 45.50 3.67
3918 5797 6.811170 GGTAAGAATAGCATCATACTGAGAGC 59.189 42.308 0.00 0.00 33.31 4.09
3919 5798 6.669125 AAGAATAGCATCATACTGAGAGCT 57.331 37.500 10.44 10.44 42.06 4.09
3920 5799 7.773489 AAGAATAGCATCATACTGAGAGCTA 57.227 36.000 13.16 13.16 43.31 3.32
3921 5800 7.773489 AGAATAGCATCATACTGAGAGCTAA 57.227 36.000 14.19 3.73 42.81 3.09
3922 5801 7.829725 AGAATAGCATCATACTGAGAGCTAAG 58.170 38.462 14.19 0.00 42.81 2.18
3923 5802 4.255833 AGCATCATACTGAGAGCTAAGC 57.744 45.455 5.41 0.00 39.07 3.09
3924 5803 3.640498 AGCATCATACTGAGAGCTAAGCA 59.360 43.478 5.41 0.00 39.07 3.91
3925 5804 4.283978 AGCATCATACTGAGAGCTAAGCAT 59.716 41.667 5.41 0.00 39.07 3.79
3926 5805 4.389382 GCATCATACTGAGAGCTAAGCATG 59.611 45.833 0.00 0.00 31.33 4.06
3927 5806 5.539979 CATCATACTGAGAGCTAAGCATGT 58.460 41.667 0.00 0.00 0.00 3.21
3928 5807 6.685657 CATCATACTGAGAGCTAAGCATGTA 58.314 40.000 0.00 0.00 0.00 2.29
3929 5808 6.715347 TCATACTGAGAGCTAAGCATGTAA 57.285 37.500 0.00 0.00 0.00 2.41
3930 5809 7.112452 TCATACTGAGAGCTAAGCATGTAAA 57.888 36.000 0.00 0.00 0.00 2.01
3961 5840 6.951256 TGATGCGACTGTTAGATTATATGC 57.049 37.500 0.00 0.00 0.00 3.14
4164 6253 2.114616 TGTTTTGGCCACCTCACATTT 58.885 42.857 3.88 0.00 0.00 2.32
4165 6254 2.158986 TGTTTTGGCCACCTCACATTTG 60.159 45.455 3.88 0.00 0.00 2.32
4201 6303 2.891580 ACTAGTCAGTCGTGTCCACAAT 59.108 45.455 0.00 0.00 0.00 2.71
4369 6477 8.618677 CGTATAAGTCTCATAGTACAGTCCAAA 58.381 37.037 0.00 0.00 0.00 3.28
4378 6486 1.740025 GTACAGTCCAAATCAGGCTGC 59.260 52.381 10.34 0.00 36.74 5.25
4701 6819 4.717233 AAAAGTGAGAACATGTGTTGCA 57.283 36.364 0.00 0.00 38.56 4.08
4749 6867 1.405105 TGTGAAAAGCTGAACAGGTGC 59.595 47.619 7.28 2.01 39.39 5.01
4849 6968 6.291322 CGATGTCGCTAAAATGAACTCTACAG 60.291 42.308 0.00 0.00 0.00 2.74
4864 6983 3.833442 TCTACAGTTGTGTATCTGCACG 58.167 45.455 0.00 0.00 41.94 5.34
4938 7059 4.655963 ACAGTCCAAGTGCTACATGAATT 58.344 39.130 0.00 0.00 0.00 2.17
4947 7068 7.066163 CCAAGTGCTACATGAATTAATGTCTGA 59.934 37.037 11.95 0.00 41.09 3.27
5041 7164 7.375053 TGAATGGAAATAGGTGTGTTTTTAGC 58.625 34.615 0.00 0.00 0.00 3.09
5049 7172 4.603985 AGGTGTGTTTTTAGCGTTTTAGC 58.396 39.130 0.00 0.00 37.41 3.09
5083 7208 6.984474 CGCTCTTATATTAGTTCACAAAGGGA 59.016 38.462 0.00 0.00 0.00 4.20
5117 7247 2.089980 CAGCTCAGTTTTATGCCAGCT 58.910 47.619 0.00 0.00 37.72 4.24
5136 7266 4.753107 CAGCTTTGCATTTTCTCAATTGGT 59.247 37.500 5.42 0.00 0.00 3.67
5255 7385 3.384789 TCTCTCTGCAAGTACAGTTGTGT 59.615 43.478 0.00 0.00 41.06 3.72
5261 7391 4.450976 TGCAAGTACAGTTGTGTTGAGAT 58.549 39.130 11.28 0.00 38.19 2.75
5355 7485 3.391506 AATTGTGAAAAGCTGAAGGGC 57.608 42.857 0.00 0.00 0.00 5.19
5370 7500 2.363018 GGCTTTCCCCCTTCCAGC 60.363 66.667 0.00 0.00 0.00 4.85
5393 7523 6.712547 AGCTCAGAATACCCTTGTATATTTGC 59.287 38.462 0.00 0.00 36.65 3.68
5528 7658 3.057526 CCCAAAGATTCGGAAACCTTGAC 60.058 47.826 9.99 0.00 0.00 3.18
5554 7684 6.503524 TCAAGCTGAAATTTGTTGAGGTAAC 58.496 36.000 0.00 0.00 39.80 2.50
5555 7685 5.108385 AGCTGAAATTTGTTGAGGTAACG 57.892 39.130 0.00 0.00 42.34 3.18
5556 7686 4.023193 AGCTGAAATTTGTTGAGGTAACGG 60.023 41.667 0.00 0.00 42.34 4.44
5557 7687 4.794169 CTGAAATTTGTTGAGGTAACGGG 58.206 43.478 0.00 0.00 42.34 5.28
5558 7688 3.004944 TGAAATTTGTTGAGGTAACGGGC 59.995 43.478 0.00 0.00 42.34 6.13
5793 7949 1.230324 GTTGTTGGTGAGAGTGAGCC 58.770 55.000 0.00 0.00 0.00 4.70
5796 7952 0.681733 GTTGGTGAGAGTGAGCCAGA 59.318 55.000 0.00 0.00 32.09 3.86
5797 7953 1.070758 GTTGGTGAGAGTGAGCCAGAA 59.929 52.381 0.00 0.00 32.09 3.02
5798 7954 1.649321 TGGTGAGAGTGAGCCAGAAT 58.351 50.000 0.00 0.00 0.00 2.40
5840 8002 2.485038 ACGAACGAACCACACTGTTTTT 59.515 40.909 0.14 0.00 0.00 1.94
5901 8063 5.012893 AGAAGCCCCTGTAAAGAATTCTTG 58.987 41.667 21.15 8.67 36.12 3.02
5915 8086 5.162000 GAATTCTTGATTCGGACCATGAC 57.838 43.478 0.00 0.00 35.21 3.06
5916 8087 3.694043 TTCTTGATTCGGACCATGACA 57.306 42.857 0.00 0.00 0.00 3.58
5917 8088 3.912496 TCTTGATTCGGACCATGACAT 57.088 42.857 0.00 0.00 0.00 3.06
5918 8089 3.534554 TCTTGATTCGGACCATGACATG 58.465 45.455 8.56 8.56 0.00 3.21
5919 8090 3.197549 TCTTGATTCGGACCATGACATGA 59.802 43.478 17.24 0.00 0.00 3.07
5920 8091 3.843893 TGATTCGGACCATGACATGAT 57.156 42.857 17.24 0.00 0.00 2.45
5921 8092 3.732212 TGATTCGGACCATGACATGATC 58.268 45.455 17.24 9.31 0.00 2.92
5922 8093 3.134442 TGATTCGGACCATGACATGATCA 59.866 43.478 17.24 12.91 43.13 2.92
5923 8094 2.602257 TCGGACCATGACATGATCAC 57.398 50.000 17.24 2.89 41.24 3.06
5948 8223 2.857748 GCTTTAGCGCACTTGTTTTGTT 59.142 40.909 11.47 0.00 0.00 2.83
5950 8225 3.766676 TTAGCGCACTTGTTTTGTTCA 57.233 38.095 11.47 0.00 0.00 3.18
5990 8269 1.000506 TGTCTAGCGGGAGTGTGAAAC 59.999 52.381 0.00 0.00 37.35 2.78
6000 8279 1.132640 GTGTGAAACGCGGATGAGC 59.867 57.895 12.47 0.00 42.39 4.26
6030 8309 1.683418 GGCCGAGGTAGTAACTGGGG 61.683 65.000 17.12 7.81 34.75 4.96
6071 8351 2.511600 CGATGGGTCCTGTTCGCC 60.512 66.667 0.00 0.00 0.00 5.54
6079 8359 2.030562 CCTGTTCGCCTTCGTGGT 59.969 61.111 0.00 0.00 38.35 4.16
6084 8364 0.234884 GTTCGCCTTCGTGGTTGAAG 59.765 55.000 0.00 0.00 43.98 3.02
6109 8389 2.386661 AAGGTAGGCGTGTGATTGAG 57.613 50.000 0.00 0.00 0.00 3.02
6114 8398 1.302511 GGCGTGTGATTGAGTGGGT 60.303 57.895 0.00 0.00 0.00 4.51
6209 8494 1.943340 GGATCGGAATGAGCTTGGAAC 59.057 52.381 0.00 0.00 32.20 3.62
6246 8531 1.922135 CTGCCGGGGAATCGTTTGTG 61.922 60.000 2.18 0.00 0.00 3.33
6277 8566 6.870971 TTTGCGGGGAATAGTTGATTATAC 57.129 37.500 0.00 0.00 0.00 1.47
6328 8794 9.896645 CACTAGTAAATCATATCCATTAGCCAT 57.103 33.333 0.00 0.00 0.00 4.40
6434 8905 4.075793 TCCACTCCCTCCTCCCCG 62.076 72.222 0.00 0.00 0.00 5.73
6456 8927 2.222027 CTCCCCCTAGCAAAAATAGCG 58.778 52.381 0.00 0.00 37.01 4.26
6475 8946 0.457681 GAAGCGCTCTGACTGGACTC 60.458 60.000 12.06 0.00 0.00 3.36
6551 9022 1.439679 GAATCTCCCGTGTTCACACC 58.560 55.000 4.48 0.00 43.66 4.16
6552 9023 0.320421 AATCTCCCGTGTTCACACCG 60.320 55.000 4.48 0.00 43.66 4.94
6576 9047 0.034477 ATTACCCAAACGCCCTCCTG 60.034 55.000 0.00 0.00 0.00 3.86
6616 9088 1.301479 GAACCGTCACCCACAGTCC 60.301 63.158 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.870021 ACTTGGCAAATCCCTCTTAGAT 57.130 40.909 0.00 0.00 0.00 1.98
46 47 3.200825 CCACCCAACCAGATAGATTGTCT 59.799 47.826 0.00 0.00 0.00 3.41
52 53 4.408921 CACTATTCCACCCAACCAGATAGA 59.591 45.833 0.00 0.00 0.00 1.98
57 58 1.955208 GCCACTATTCCACCCAACCAG 60.955 57.143 0.00 0.00 0.00 4.00
66 67 2.173356 CAGATTCCCTGCCACTATTCCA 59.827 50.000 0.00 0.00 35.89 3.53
103 110 7.067008 CCCAACCGAATAATGGATTATATGTCC 59.933 40.741 2.80 2.80 36.27 4.02
130 137 0.827368 CCTCCTCAACTCCCTAGCAC 59.173 60.000 0.00 0.00 0.00 4.40
145 152 1.670059 TTCTCTTTCCCCTTCCCTCC 58.330 55.000 0.00 0.00 0.00 4.30
208 219 9.295825 AGGAAGTAACATCACATGTGAATTAAA 57.704 29.630 31.00 13.73 44.07 1.52
256 1115 3.132646 ACTCATGTTTGGTGCATGTTGTT 59.867 39.130 0.00 0.00 42.94 2.83
365 1225 1.001181 GGTACTGACCCTTACAACGCA 59.999 52.381 0.00 0.00 40.23 5.24
366 1226 1.001181 TGGTACTGACCCTTACAACGC 59.999 52.381 0.00 0.00 46.32 4.84
441 1301 6.488344 ACTCAAAAAGGATGGAAGAAGAAGTC 59.512 38.462 0.00 0.00 0.00 3.01
442 1302 6.264067 CACTCAAAAAGGATGGAAGAAGAAGT 59.736 38.462 0.00 0.00 0.00 3.01
443 1303 6.264067 ACACTCAAAAAGGATGGAAGAAGAAG 59.736 38.462 0.00 0.00 0.00 2.85
444 1304 6.129179 ACACTCAAAAAGGATGGAAGAAGAA 58.871 36.000 0.00 0.00 0.00 2.52
445 1305 5.694995 ACACTCAAAAAGGATGGAAGAAGA 58.305 37.500 0.00 0.00 0.00 2.87
518 1385 6.014499 ACTCTTATATTATGGGACGAAGGGTG 60.014 42.308 0.00 0.00 0.00 4.61
519 1386 6.014499 CACTCTTATATTATGGGACGAAGGGT 60.014 42.308 0.00 0.00 0.00 4.34
520 1387 6.014499 ACACTCTTATATTATGGGACGAAGGG 60.014 42.308 0.00 0.00 0.00 3.95
521 1388 6.994221 ACACTCTTATATTATGGGACGAAGG 58.006 40.000 0.00 0.00 0.00 3.46
523 1390 9.104965 CAAAACACTCTTATATTATGGGACGAA 57.895 33.333 0.00 0.00 0.00 3.85
524 1391 7.713507 CCAAAACACTCTTATATTATGGGACGA 59.286 37.037 0.00 0.00 0.00 4.20
525 1392 7.041372 CCCAAAACACTCTTATATTATGGGACG 60.041 40.741 0.00 0.00 45.26 4.79
526 1393 7.996644 TCCCAAAACACTCTTATATTATGGGAC 59.003 37.037 0.00 0.00 45.81 4.46
528 1395 7.041372 CGTCCCAAAACACTCTTATATTATGGG 60.041 40.741 0.00 0.00 44.08 4.00
529 1396 7.713507 TCGTCCCAAAACACTCTTATATTATGG 59.286 37.037 0.00 0.00 0.00 2.74
531 1398 9.326413 CTTCGTCCCAAAACACTCTTATATTAT 57.674 33.333 0.00 0.00 0.00 1.28
532 1399 7.767198 CCTTCGTCCCAAAACACTCTTATATTA 59.233 37.037 0.00 0.00 0.00 0.98
533 1400 6.598064 CCTTCGTCCCAAAACACTCTTATATT 59.402 38.462 0.00 0.00 0.00 1.28
534 1401 6.113411 CCTTCGTCCCAAAACACTCTTATAT 58.887 40.000 0.00 0.00 0.00 0.86
535 1402 5.484715 CCTTCGTCCCAAAACACTCTTATA 58.515 41.667 0.00 0.00 0.00 0.98
536 1403 4.324267 CCTTCGTCCCAAAACACTCTTAT 58.676 43.478 0.00 0.00 0.00 1.73
537 1404 3.495453 CCCTTCGTCCCAAAACACTCTTA 60.495 47.826 0.00 0.00 0.00 2.10
538 1405 2.572290 CCTTCGTCCCAAAACACTCTT 58.428 47.619 0.00 0.00 0.00 2.85
539 1406 1.202770 CCCTTCGTCCCAAAACACTCT 60.203 52.381 0.00 0.00 0.00 3.24
540 1407 1.202722 TCCCTTCGTCCCAAAACACTC 60.203 52.381 0.00 0.00 0.00 3.51
541 1408 0.841289 TCCCTTCGTCCCAAAACACT 59.159 50.000 0.00 0.00 0.00 3.55
542 1409 1.235724 CTCCCTTCGTCCCAAAACAC 58.764 55.000 0.00 0.00 0.00 3.32
543 1410 0.841289 ACTCCCTTCGTCCCAAAACA 59.159 50.000 0.00 0.00 0.00 2.83
544 1411 2.845363 TACTCCCTTCGTCCCAAAAC 57.155 50.000 0.00 0.00 0.00 2.43
545 1412 4.076394 CAATTACTCCCTTCGTCCCAAAA 58.924 43.478 0.00 0.00 0.00 2.44
546 1413 3.073356 ACAATTACTCCCTTCGTCCCAAA 59.927 43.478 0.00 0.00 0.00 3.28
547 1414 2.640826 ACAATTACTCCCTTCGTCCCAA 59.359 45.455 0.00 0.00 0.00 4.12
548 1415 2.262637 ACAATTACTCCCTTCGTCCCA 58.737 47.619 0.00 0.00 0.00 4.37
549 1416 3.345508 AACAATTACTCCCTTCGTCCC 57.654 47.619 0.00 0.00 0.00 4.46
550 1417 4.070009 ACAAACAATTACTCCCTTCGTCC 58.930 43.478 0.00 0.00 0.00 4.79
551 1418 5.684550 AACAAACAATTACTCCCTTCGTC 57.315 39.130 0.00 0.00 0.00 4.20
552 1419 5.221165 CCAAACAAACAATTACTCCCTTCGT 60.221 40.000 0.00 0.00 0.00 3.85
553 1420 5.219633 CCAAACAAACAATTACTCCCTTCG 58.780 41.667 0.00 0.00 0.00 3.79
554 1421 4.988540 GCCAAACAAACAATTACTCCCTTC 59.011 41.667 0.00 0.00 0.00 3.46
555 1422 4.202315 GGCCAAACAAACAATTACTCCCTT 60.202 41.667 0.00 0.00 0.00 3.95
556 1423 3.323691 GGCCAAACAAACAATTACTCCCT 59.676 43.478 0.00 0.00 0.00 4.20
557 1424 3.659786 GGCCAAACAAACAATTACTCCC 58.340 45.455 0.00 0.00 0.00 4.30
558 1425 3.004944 TCGGCCAAACAAACAATTACTCC 59.995 43.478 2.24 0.00 0.00 3.85
559 1426 4.231718 TCGGCCAAACAAACAATTACTC 57.768 40.909 2.24 0.00 0.00 2.59
560 1427 4.522789 AGATCGGCCAAACAAACAATTACT 59.477 37.500 2.24 0.00 0.00 2.24
561 1428 4.805219 AGATCGGCCAAACAAACAATTAC 58.195 39.130 2.24 0.00 0.00 1.89
562 1429 5.461032 AAGATCGGCCAAACAAACAATTA 57.539 34.783 2.24 0.00 0.00 1.40
563 1430 4.335400 AAGATCGGCCAAACAAACAATT 57.665 36.364 2.24 0.00 0.00 2.32
670 1539 7.669089 AGTTCCCCTCAAAATAACTCAAAAA 57.331 32.000 0.00 0.00 0.00 1.94
671 1540 7.669089 AAGTTCCCCTCAAAATAACTCAAAA 57.331 32.000 0.00 0.00 30.37 2.44
702 1571 9.696572 CATCATAATTATTCCCCTCAATGATCT 57.303 33.333 0.00 0.00 32.09 2.75
703 1572 8.910944 CCATCATAATTATTCCCCTCAATGATC 58.089 37.037 0.00 0.00 32.09 2.92
704 1573 8.626473 TCCATCATAATTATTCCCCTCAATGAT 58.374 33.333 0.00 0.00 34.12 2.45
705 1574 7.999042 TCCATCATAATTATTCCCCTCAATGA 58.001 34.615 0.00 0.00 0.00 2.57
706 1575 8.526147 GTTCCATCATAATTATTCCCCTCAATG 58.474 37.037 0.00 0.00 0.00 2.82
707 1576 7.394359 CGTTCCATCATAATTATTCCCCTCAAT 59.606 37.037 0.00 0.00 0.00 2.57
708 1577 6.714810 CGTTCCATCATAATTATTCCCCTCAA 59.285 38.462 0.00 0.00 0.00 3.02
709 1578 6.183361 ACGTTCCATCATAATTATTCCCCTCA 60.183 38.462 0.00 0.00 0.00 3.86
710 1579 6.149474 CACGTTCCATCATAATTATTCCCCTC 59.851 42.308 0.00 0.00 0.00 4.30
711 1580 6.003950 CACGTTCCATCATAATTATTCCCCT 58.996 40.000 0.00 0.00 0.00 4.79
712 1581 5.768164 ACACGTTCCATCATAATTATTCCCC 59.232 40.000 0.00 0.00 0.00 4.81
713 1582 6.485313 TCACACGTTCCATCATAATTATTCCC 59.515 38.462 0.00 0.00 0.00 3.97
714 1583 7.307989 CCTCACACGTTCCATCATAATTATTCC 60.308 40.741 0.00 0.00 0.00 3.01
715 1584 7.307989 CCCTCACACGTTCCATCATAATTATTC 60.308 40.741 0.00 0.00 0.00 1.75
716 1585 6.486657 CCCTCACACGTTCCATCATAATTATT 59.513 38.462 0.00 0.00 0.00 1.40
717 1586 5.997746 CCCTCACACGTTCCATCATAATTAT 59.002 40.000 0.00 0.00 0.00 1.28
718 1587 5.104693 ACCCTCACACGTTCCATCATAATTA 60.105 40.000 0.00 0.00 0.00 1.40
719 1588 4.199310 CCCTCACACGTTCCATCATAATT 58.801 43.478 0.00 0.00 0.00 1.40
720 1589 3.199946 ACCCTCACACGTTCCATCATAAT 59.800 43.478 0.00 0.00 0.00 1.28
721 1590 2.569853 ACCCTCACACGTTCCATCATAA 59.430 45.455 0.00 0.00 0.00 1.90
722 1591 2.184533 ACCCTCACACGTTCCATCATA 58.815 47.619 0.00 0.00 0.00 2.15
723 1592 0.984230 ACCCTCACACGTTCCATCAT 59.016 50.000 0.00 0.00 0.00 2.45
724 1593 0.762418 AACCCTCACACGTTCCATCA 59.238 50.000 0.00 0.00 0.00 3.07
725 1594 1.156736 CAACCCTCACACGTTCCATC 58.843 55.000 0.00 0.00 0.00 3.51
726 1595 0.472471 ACAACCCTCACACGTTCCAT 59.528 50.000 0.00 0.00 0.00 3.41
727 1596 0.253610 AACAACCCTCACACGTTCCA 59.746 50.000 0.00 0.00 0.00 3.53
728 1597 0.661020 CAACAACCCTCACACGTTCC 59.339 55.000 0.00 0.00 0.00 3.62
729 1598 1.375551 ACAACAACCCTCACACGTTC 58.624 50.000 0.00 0.00 0.00 3.95
730 1599 2.557317 CTACAACAACCCTCACACGTT 58.443 47.619 0.00 0.00 0.00 3.99
731 1600 1.808891 GCTACAACAACCCTCACACGT 60.809 52.381 0.00 0.00 0.00 4.49
732 1601 0.865769 GCTACAACAACCCTCACACG 59.134 55.000 0.00 0.00 0.00 4.49
733 1602 1.235724 GGCTACAACAACCCTCACAC 58.764 55.000 0.00 0.00 0.00 3.82
734 1603 0.109723 GGGCTACAACAACCCTCACA 59.890 55.000 0.00 0.00 40.75 3.58
735 1604 0.109723 TGGGCTACAACAACCCTCAC 59.890 55.000 0.00 0.00 44.56 3.51
736 1605 1.004277 GATGGGCTACAACAACCCTCA 59.996 52.381 0.00 0.00 44.56 3.86
762 1631 0.251121 TGGGCCGCAAAGAATTCAGA 60.251 50.000 8.44 0.00 0.00 3.27
800 1669 1.014564 GTCGGCTGACTGGCTGTTAC 61.015 60.000 18.76 0.00 42.08 2.50
801 1670 1.292223 GTCGGCTGACTGGCTGTTA 59.708 57.895 18.76 0.00 42.08 2.41
828 1697 3.054189 TTGGTGTGTGGCTGCCTGA 62.054 57.895 21.03 2.91 0.00 3.86
838 1707 2.203153 GGGCTCACGTTGGTGTGT 60.203 61.111 0.00 0.00 44.68 3.72
862 1731 5.945310 CCATAGAATGGGGATTTTCTCTGA 58.055 41.667 0.00 0.00 46.86 3.27
905 1774 0.397957 GGAAGGAGGAGGAGGAGGAC 60.398 65.000 0.00 0.00 0.00 3.85
908 1777 1.074850 GGGGAAGGAGGAGGAGGAG 60.075 68.421 0.00 0.00 0.00 3.69
929 1798 3.062466 TGGAGTGGAGGCGACGAG 61.062 66.667 0.00 0.00 0.00 4.18
1233 2108 2.692741 CCCTGGAGGTCCTTCCCC 60.693 72.222 0.00 0.00 36.35 4.81
1433 2311 8.307483 CAATAACAATACGGAGGAGTGAGATAT 58.693 37.037 0.00 0.00 0.00 1.63
1444 2322 3.558418 CGAACCCCAATAACAATACGGAG 59.442 47.826 0.00 0.00 0.00 4.63
1452 2330 1.000646 GCCCCGAACCCCAATAACA 60.001 57.895 0.00 0.00 0.00 2.41
1456 2334 2.284515 GATGAGCCCCGAACCCCAAT 62.285 60.000 0.00 0.00 0.00 3.16
1457 2335 2.938798 ATGAGCCCCGAACCCCAA 60.939 61.111 0.00 0.00 0.00 4.12
1462 2340 2.124695 GGGTGATGAGCCCCGAAC 60.125 66.667 0.00 0.00 40.26 3.95
1477 2355 3.094572 AGATGACAATTGGCAAAGAGGG 58.905 45.455 19.96 0.00 36.16 4.30
1662 2540 3.013921 GCGGAAATGGACCAGATAAACA 58.986 45.455 0.00 0.00 0.00 2.83
1667 2545 0.394352 GTGGCGGAAATGGACCAGAT 60.394 55.000 0.00 0.00 31.46 2.90
1824 2702 4.929211 GGTTAAGTAGCCTTTTGCAAATGG 59.071 41.667 30.39 30.39 44.83 3.16
1861 2740 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1862 2741 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1863 2742 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
1864 2743 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
1865 2744 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
1866 2745 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
1867 2746 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
1868 2747 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
1869 2748 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
1870 2749 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
1871 2750 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
1910 2789 9.667107 TCCGTTCTAAAATAGATGACTCAATTT 57.333 29.630 0.00 0.00 34.22 1.82
1911 2790 9.319143 CTCCGTTCTAAAATAGATGACTCAATT 57.681 33.333 0.00 0.00 34.22 2.32
1912 2791 7.928706 CCTCCGTTCTAAAATAGATGACTCAAT 59.071 37.037 0.00 0.00 34.22 2.57
1913 2792 7.265673 CCTCCGTTCTAAAATAGATGACTCAA 58.734 38.462 0.00 0.00 34.22 3.02
1914 2793 6.183360 CCCTCCGTTCTAAAATAGATGACTCA 60.183 42.308 0.00 0.00 34.22 3.41
1915 2794 6.040616 TCCCTCCGTTCTAAAATAGATGACTC 59.959 42.308 0.00 0.00 34.22 3.36
1916 2795 5.897824 TCCCTCCGTTCTAAAATAGATGACT 59.102 40.000 0.00 0.00 34.22 3.41
1917 2796 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
1918 2797 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
1919 2798 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
1920 2799 6.267242 GGTACTCCCTCCGTTCTAAAATAGAT 59.733 42.308 0.00 0.00 34.22 1.98
1921 2800 5.595952 GGTACTCCCTCCGTTCTAAAATAGA 59.404 44.000 0.00 0.00 0.00 1.98
1922 2801 5.597594 AGGTACTCCCTCCGTTCTAAAATAG 59.402 44.000 0.00 0.00 40.71 1.73
1923 2802 5.361857 CAGGTACTCCCTCCGTTCTAAAATA 59.638 44.000 0.00 0.00 43.86 1.40
1924 2803 4.161754 CAGGTACTCCCTCCGTTCTAAAAT 59.838 45.833 0.00 0.00 43.86 1.82
1925 2804 3.512724 CAGGTACTCCCTCCGTTCTAAAA 59.487 47.826 0.00 0.00 43.86 1.52
1926 2805 3.094572 CAGGTACTCCCTCCGTTCTAAA 58.905 50.000 0.00 0.00 43.86 1.85
1927 2806 2.042162 ACAGGTACTCCCTCCGTTCTAA 59.958 50.000 0.00 0.00 43.86 2.10
1928 2807 1.637553 ACAGGTACTCCCTCCGTTCTA 59.362 52.381 0.00 0.00 43.86 2.10
1929 2808 0.408700 ACAGGTACTCCCTCCGTTCT 59.591 55.000 0.00 0.00 43.86 3.01
1930 2809 2.134789 TACAGGTACTCCCTCCGTTC 57.865 55.000 0.00 0.00 43.86 3.95
1931 2810 2.610438 TTACAGGTACTCCCTCCGTT 57.390 50.000 0.00 0.00 43.86 4.44
1932 2811 2.610438 TTTACAGGTACTCCCTCCGT 57.390 50.000 0.00 0.00 43.86 4.69
1933 2812 3.512724 TCTTTTTACAGGTACTCCCTCCG 59.487 47.826 0.00 0.00 43.86 4.63
1934 2813 5.494390 TTCTTTTTACAGGTACTCCCTCC 57.506 43.478 0.00 0.00 43.86 4.30
1935 2814 8.075761 TCTATTCTTTTTACAGGTACTCCCTC 57.924 38.462 0.00 0.00 43.86 4.30
1937 2816 7.273712 CCTCTATTCTTTTTACAGGTACTCCC 58.726 42.308 0.00 0.00 34.60 4.30
1938 2817 7.273712 CCCTCTATTCTTTTTACAGGTACTCC 58.726 42.308 0.00 0.00 34.60 3.85
1939 2818 7.273712 CCCCTCTATTCTTTTTACAGGTACTC 58.726 42.308 0.00 0.00 34.60 2.59
1940 2819 6.158169 CCCCCTCTATTCTTTTTACAGGTACT 59.842 42.308 0.00 0.00 43.88 2.73
1941 2820 6.157471 TCCCCCTCTATTCTTTTTACAGGTAC 59.843 42.308 0.00 0.00 0.00 3.34
1942 2821 6.273889 TCCCCCTCTATTCTTTTTACAGGTA 58.726 40.000 0.00 0.00 0.00 3.08
1943 2822 5.105853 TCCCCCTCTATTCTTTTTACAGGT 58.894 41.667 0.00 0.00 0.00 4.00
1944 2823 5.710409 TCCCCCTCTATTCTTTTTACAGG 57.290 43.478 0.00 0.00 0.00 4.00
2019 2898 5.895636 TTGGCTTAACTACATTCCACATG 57.104 39.130 0.00 0.00 0.00 3.21
2025 2904 9.129209 GAGATTTGTTTTGGCTTAACTACATTC 57.871 33.333 4.44 0.00 0.00 2.67
2039 2918 3.230134 TGGGACTGGGAGATTTGTTTTG 58.770 45.455 0.00 0.00 0.00 2.44
2126 3005 5.892119 ACTCCTGTAATCCAAGTTATCTCGA 59.108 40.000 0.00 0.00 0.00 4.04
2141 3020 7.728148 TGTGTGTAAAACTGATACTCCTGTAA 58.272 34.615 0.00 0.00 31.80 2.41
2144 3023 6.455647 TCTGTGTGTAAAACTGATACTCCTG 58.544 40.000 0.00 0.00 25.83 3.86
2208 3087 7.435192 CGAGCTTTTGTCTTGGAAAACTTAAAT 59.565 33.333 0.00 0.00 0.00 1.40
2255 3134 1.955778 CACTGTGACAATGGCCAAAGA 59.044 47.619 10.96 0.00 0.00 2.52
2284 3163 2.350522 GTCAGAATAGTGTGGCTGTGG 58.649 52.381 0.00 0.00 0.00 4.17
2287 3166 4.679373 ATAGGTCAGAATAGTGTGGCTG 57.321 45.455 0.00 0.00 0.00 4.85
2288 3167 6.153680 GCTATATAGGTCAGAATAGTGTGGCT 59.846 42.308 11.72 0.00 0.00 4.75
2329 3208 6.087555 CAGTTAATCCGTTACATGTTTTGCAC 59.912 38.462 2.30 0.00 0.00 4.57
2349 3228 2.972713 AGGAGAGTTGTGAAGGCAGTTA 59.027 45.455 0.00 0.00 0.00 2.24
2360 3239 6.487299 ACTAGAGAACAAAAGGAGAGTTGT 57.513 37.500 0.00 0.00 39.63 3.32
2526 3408 2.880890 ACAAGACAGCAATCACAAGTCC 59.119 45.455 0.00 0.00 0.00 3.85
2594 3476 5.107607 GCTTGCAACAGTTTTTCATGATCTG 60.108 40.000 0.00 6.24 0.00 2.90
2978 3868 9.431887 TCACATTAACAGTTACCAGATAAAGAC 57.568 33.333 0.00 0.00 0.00 3.01
2989 3879 9.821662 GTATCACCTTTTCACATTAACAGTTAC 57.178 33.333 0.00 0.00 0.00 2.50
2990 3880 9.562408 TGTATCACCTTTTCACATTAACAGTTA 57.438 29.630 0.00 0.00 0.00 2.24
2991 3881 8.458573 TGTATCACCTTTTCACATTAACAGTT 57.541 30.769 0.00 0.00 0.00 3.16
2992 3882 8.458573 TTGTATCACCTTTTCACATTAACAGT 57.541 30.769 0.00 0.00 0.00 3.55
3019 4010 0.458889 TTCTACGCGCGCCTGTTAAT 60.459 50.000 32.58 10.51 0.00 1.40
3029 4020 1.973138 TAGACTGTGTTTCTACGCGC 58.027 50.000 5.73 0.00 37.60 6.86
3051 4042 5.871396 TGCTTAGTGGGGACTATTTAGAG 57.129 43.478 0.00 0.00 0.00 2.43
3098 4090 3.447586 TCTCTACGAAGGCAGCTTACAAT 59.552 43.478 0.00 0.00 0.00 2.71
3293 5163 8.349245 CAACAAACTGTGAGACCATTTTATACA 58.651 33.333 0.00 0.00 0.00 2.29
3308 5178 4.209703 GCAATGAACATCCAACAAACTGTG 59.790 41.667 0.00 0.00 0.00 3.66
3392 5263 0.800012 TTTTGGAATGCGGCTCGTAC 59.200 50.000 0.00 0.00 0.00 3.67
3417 5296 6.080648 ACATAACATGCAGCTGGATTTATG 57.919 37.500 32.10 32.10 35.58 1.90
3588 5467 4.762289 ACCATCAATACTCAGGTCCTTC 57.238 45.455 0.00 0.00 0.00 3.46
3594 5473 5.221441 TGTCCGAATACCATCAATACTCAGG 60.221 44.000 0.00 0.00 0.00 3.86
3837 5716 4.806286 GCCAAGTTAGAGTTAGCCTTTCCA 60.806 45.833 0.00 0.00 0.00 3.53
3918 5797 7.568315 CGCATCATACTGAGTTTACATGCTTAG 60.568 40.741 13.39 0.00 0.00 2.18
3919 5798 6.200854 CGCATCATACTGAGTTTACATGCTTA 59.799 38.462 13.39 0.00 0.00 3.09
3920 5799 5.007039 CGCATCATACTGAGTTTACATGCTT 59.993 40.000 13.39 0.00 0.00 3.91
3921 5800 4.509230 CGCATCATACTGAGTTTACATGCT 59.491 41.667 13.39 0.00 0.00 3.79
3922 5801 4.507756 TCGCATCATACTGAGTTTACATGC 59.492 41.667 0.00 0.00 0.00 4.06
3923 5802 5.750547 AGTCGCATCATACTGAGTTTACATG 59.249 40.000 0.00 0.00 0.00 3.21
3924 5803 5.750547 CAGTCGCATCATACTGAGTTTACAT 59.249 40.000 0.00 0.00 44.79 2.29
3925 5804 5.102313 CAGTCGCATCATACTGAGTTTACA 58.898 41.667 0.00 0.00 44.79 2.41
3926 5805 5.103000 ACAGTCGCATCATACTGAGTTTAC 58.897 41.667 9.30 0.00 44.79 2.01
3927 5806 5.324784 ACAGTCGCATCATACTGAGTTTA 57.675 39.130 9.30 0.00 44.79 2.01
3928 5807 4.193826 ACAGTCGCATCATACTGAGTTT 57.806 40.909 9.30 0.00 44.79 2.66
3929 5808 3.876274 ACAGTCGCATCATACTGAGTT 57.124 42.857 9.30 0.00 44.79 3.01
3930 5809 3.876274 AACAGTCGCATCATACTGAGT 57.124 42.857 9.30 0.00 44.79 3.41
3961 5840 2.880963 ACGGAAACCACACATTTTGG 57.119 45.000 0.00 0.00 40.32 3.28
4164 6253 6.490381 ACTGACTAGTAGATGACAAGACAACA 59.510 38.462 3.59 0.00 34.74 3.33
4165 6254 6.915349 ACTGACTAGTAGATGACAAGACAAC 58.085 40.000 3.59 0.00 34.74 3.32
4201 6303 9.440773 AGATATGATCGCATAAAGCAAAAGATA 57.559 29.630 0.00 0.00 46.13 1.98
4749 6867 6.757897 TGAAGTTCATAATTACAAGGCCAG 57.242 37.500 5.01 0.00 0.00 4.85
4849 6968 2.900122 AATGCGTGCAGATACACAAC 57.100 45.000 0.00 0.00 40.73 3.32
4966 7088 1.077915 GGCATTCCAAACGGCATTTG 58.922 50.000 0.00 0.00 46.32 2.32
4972 7094 1.818060 TGATTCTGGCATTCCAAACGG 59.182 47.619 0.00 0.00 42.91 4.44
5049 7172 9.608617 TGAACTAATATAAGAGCGTTTAGATCG 57.391 33.333 0.00 0.00 40.85 3.69
5074 7199 2.930826 ACCACAGTACTCCCTTTGTG 57.069 50.000 0.00 0.00 40.36 3.33
5078 7203 3.197983 GCTGATAACCACAGTACTCCCTT 59.802 47.826 0.00 0.00 37.64 3.95
5083 7208 4.090090 ACTGAGCTGATAACCACAGTACT 58.910 43.478 0.00 0.00 36.94 2.73
5136 7266 4.998671 TGAAGAATGCCACAAAGTCAAA 57.001 36.364 0.00 0.00 0.00 2.69
5234 7364 3.722147 ACACAACTGTACTTGCAGAGAG 58.278 45.455 0.92 0.00 39.62 3.20
5355 7485 0.034670 CTGAGCTGGAAGGGGGAAAG 60.035 60.000 0.00 0.00 0.00 2.62
5359 7489 1.141858 GTATTCTGAGCTGGAAGGGGG 59.858 57.143 0.00 0.00 0.00 5.40
5370 7500 6.147821 CCGCAAATATACAAGGGTATTCTGAG 59.852 42.308 0.00 0.00 40.61 3.35
5393 7523 1.079681 TAAGTAAGCGTGCACCCCG 60.080 57.895 12.15 0.10 0.00 5.73
5528 7658 5.594926 ACCTCAACAAATTTCAGCTTGAAG 58.405 37.500 0.00 0.00 37.70 3.02
5556 7686 4.133796 GAAACCCATGCGCTGGCC 62.134 66.667 17.35 0.00 44.46 5.36
5557 7687 4.481112 CGAAACCCATGCGCTGGC 62.481 66.667 17.35 5.97 44.46 4.85
5558 7688 3.055719 ACGAAACCCATGCGCTGG 61.056 61.111 9.73 13.82 45.51 4.85
5609 7765 0.459934 TGTTGTGCTGCAGCCAAAAC 60.460 50.000 34.64 30.60 41.18 2.43
5856 8018 0.802494 CGGTTGGGAGAAATGGAACG 59.198 55.000 0.00 0.00 0.00 3.95
5868 8030 2.271173 GGGCTTCTACCGGTTGGG 59.729 66.667 15.04 8.97 40.75 4.12
5871 8033 0.252375 TACAGGGGCTTCTACCGGTT 60.252 55.000 15.04 0.00 36.56 4.44
5872 8034 0.252375 TTACAGGGGCTTCTACCGGT 60.252 55.000 13.98 13.98 38.67 5.28
5901 8063 3.496130 GTGATCATGTCATGGTCCGAATC 59.504 47.826 20.94 11.87 39.69 2.52
5915 8086 2.097202 GCGCTAAAGCTACGTGATCATG 60.097 50.000 13.53 13.53 39.32 3.07
5916 8087 2.128035 GCGCTAAAGCTACGTGATCAT 58.872 47.619 0.00 0.00 39.32 2.45
5917 8088 1.135228 TGCGCTAAAGCTACGTGATCA 60.135 47.619 9.73 0.00 39.32 2.92
5918 8089 1.255600 GTGCGCTAAAGCTACGTGATC 59.744 52.381 9.73 0.00 39.32 2.92
5919 8090 1.135083 AGTGCGCTAAAGCTACGTGAT 60.135 47.619 9.73 0.00 39.32 3.06
5920 8091 0.242825 AGTGCGCTAAAGCTACGTGA 59.757 50.000 9.73 0.00 39.32 4.35
5921 8092 1.068474 AAGTGCGCTAAAGCTACGTG 58.932 50.000 9.73 0.00 39.32 4.49
5922 8093 1.068474 CAAGTGCGCTAAAGCTACGT 58.932 50.000 9.73 0.00 39.32 3.57
5923 8094 1.068474 ACAAGTGCGCTAAAGCTACG 58.932 50.000 9.73 0.00 39.32 3.51
5942 8217 2.096819 GCAACACGACCTCTGAACAAAA 59.903 45.455 0.00 0.00 0.00 2.44
5948 8223 2.338620 CGGCAACACGACCTCTGA 59.661 61.111 0.00 0.00 35.47 3.27
5950 8225 3.616721 AGCGGCAACACGACCTCT 61.617 61.111 1.45 0.00 35.47 3.69
5980 8259 0.716108 CTCATCCGCGTTTCACACTC 59.284 55.000 4.92 0.00 0.00 3.51
6000 8279 2.126307 CTCGGCCACACTCACTCG 60.126 66.667 2.24 0.00 0.00 4.18
6071 8351 3.548818 CCTTTCAAGCTTCAACCACGAAG 60.549 47.826 0.00 0.00 44.37 3.79
6079 8359 2.151202 CGCCTACCTTTCAAGCTTCAA 58.849 47.619 0.00 0.00 0.00 2.69
6084 8364 0.517316 CACACGCCTACCTTTCAAGC 59.483 55.000 0.00 0.00 0.00 4.01
6109 8389 0.598065 GTCAAGCCAACATCACCCAC 59.402 55.000 0.00 0.00 0.00 4.61
6114 8398 1.303236 CCCCGTCAAGCCAACATCA 60.303 57.895 0.00 0.00 0.00 3.07
6188 8472 0.469917 TCCAAGCTCATTCCGATCCC 59.530 55.000 0.00 0.00 0.00 3.85
6202 8486 8.820831 AGATTAGATCCATGGTATAGTTCCAAG 58.179 37.037 12.58 0.00 38.52 3.61
6209 8494 5.452496 CCGGCAGATTAGATCCATGGTATAG 60.452 48.000 12.58 0.00 0.00 1.31
6254 8539 6.597562 AGTATAATCAACTATTCCCCGCAAA 58.402 36.000 0.00 0.00 0.00 3.68
6255 8540 6.182507 AGTATAATCAACTATTCCCCGCAA 57.817 37.500 0.00 0.00 0.00 4.85
6256 8541 5.818678 AGTATAATCAACTATTCCCCGCA 57.181 39.130 0.00 0.00 0.00 5.69
6302 8760 9.896645 ATGGCTAATGGATATGATTTACTAGTG 57.103 33.333 5.39 0.00 0.00 2.74
6328 8794 3.287222 CCGGATTAATCAAGGGAGCAAA 58.713 45.455 17.07 0.00 0.00 3.68
6367 8833 4.266070 CGGCATGCATCTGGCTGC 62.266 66.667 21.36 5.78 45.15 5.25
6434 8905 2.587522 CTATTTTTGCTAGGGGGAGGC 58.412 52.381 0.00 0.00 0.00 4.70
6438 8909 2.341846 TCGCTATTTTTGCTAGGGGG 57.658 50.000 0.00 0.00 31.88 5.40
6456 8927 0.457681 GAGTCCAGTCAGAGCGCTTC 60.458 60.000 13.26 4.88 0.00 3.86
6470 8941 3.360340 ACGTCGGTCGGTGAGTCC 61.360 66.667 0.00 0.00 44.69 3.85
6551 9022 0.734597 GGCGTTTGGGTAATTTGGCG 60.735 55.000 0.00 0.00 0.00 5.69
6552 9023 0.390603 GGGCGTTTGGGTAATTTGGC 60.391 55.000 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.