Multiple sequence alignment - TraesCS2B01G095500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G095500 chr2B 100.000 6337 0 0 1 6337 55880138 55886474 0.000000e+00 11703.0
1 TraesCS2B01G095500 chr2A 90.514 5682 302 95 1 5583 36627192 36632735 0.000000e+00 7287.0
2 TraesCS2B01G095500 chr2A 94.186 86 5 0 896 981 774008627 774008712 1.430000e-26 132.0
3 TraesCS2B01G095500 chr2D 92.283 2501 151 19 3493 5975 33721295 33723771 0.000000e+00 3511.0
4 TraesCS2B01G095500 chr2D 93.414 2141 114 16 1332 3469 33719182 33721298 0.000000e+00 3147.0
5 TraesCS2B01G095500 chr2D 84.103 1277 79 36 33 1251 33717864 33719074 0.000000e+00 1120.0
6 TraesCS2B01G095500 chr4B 91.611 596 42 5 1366 1958 548821392 548821982 0.000000e+00 817.0
7 TraesCS2B01G095500 chr4B 94.444 198 8 2 1004 1201 548821160 548821354 1.030000e-77 302.0
8 TraesCS2B01G095500 chr4B 100.000 39 0 0 1224 1262 548821353 548821391 8.810000e-09 73.1
9 TraesCS2B01G095500 chr6A 84.679 731 52 30 757 1440 76578375 76579092 0.000000e+00 675.0
10 TraesCS2B01G095500 chr1B 90.083 242 14 5 2865 3106 422513623 422513392 7.980000e-79 305.0
11 TraesCS2B01G095500 chr1B 95.714 140 6 0 3092 3231 422513350 422513211 6.390000e-55 226.0
12 TraesCS2B01G095500 chr1B 88.272 162 9 4 2865 3026 422514033 422513882 1.080000e-42 185.0
13 TraesCS2B01G095500 chr1B 94.898 98 3 2 1000 1096 52903645 52903741 1.100000e-32 152.0
14 TraesCS2B01G095500 chr1B 94.118 85 5 0 897 981 13206033 13205949 5.160000e-26 130.0
15 TraesCS2B01G095500 chr1D 93.878 98 4 2 1000 1096 34622961 34623057 5.120000e-31 147.0
16 TraesCS2B01G095500 chr1A 92.857 98 5 2 1000 1096 32896090 32896186 2.380000e-29 141.0
17 TraesCS2B01G095500 chr1A 96.053 76 3 0 906 981 470999833 470999758 2.400000e-24 124.0
18 TraesCS2B01G095500 chr1A 96.053 76 3 0 906 981 471030573 471030498 2.400000e-24 124.0
19 TraesCS2B01G095500 chr7B 95.294 85 4 0 897 981 549112700 549112784 1.110000e-27 135.0
20 TraesCS2B01G095500 chr7B 97.500 40 1 0 5792 5831 592617870 592617831 1.140000e-07 69.4
21 TraesCS2B01G095500 chrUn 94.118 85 5 0 897 981 38469745 38469661 5.160000e-26 130.0
22 TraesCS2B01G095500 chr5B 94.118 85 5 0 897 981 133706598 133706514 5.160000e-26 130.0
23 TraesCS2B01G095500 chr4A 94.118 85 5 0 897 981 713776127 713776043 5.160000e-26 130.0
24 TraesCS2B01G095500 chr3D 89.796 98 10 0 1000 1097 614203919 614203822 6.670000e-25 126.0
25 TraesCS2B01G095500 chr3B 89.796 98 10 0 1000 1097 823577940 823577843 6.670000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G095500 chr2B 55880138 55886474 6336 False 11703.000000 11703 100.000000 1 6337 1 chr2B.!!$F1 6336
1 TraesCS2B01G095500 chr2A 36627192 36632735 5543 False 7287.000000 7287 90.514000 1 5583 1 chr2A.!!$F1 5582
2 TraesCS2B01G095500 chr2D 33717864 33723771 5907 False 2592.666667 3511 89.933333 33 5975 3 chr2D.!!$F1 5942
3 TraesCS2B01G095500 chr4B 548821160 548821982 822 False 397.366667 817 95.351667 1004 1958 3 chr4B.!!$F1 954
4 TraesCS2B01G095500 chr6A 76578375 76579092 717 False 675.000000 675 84.679000 757 1440 1 chr6A.!!$F1 683
5 TraesCS2B01G095500 chr1B 422513211 422514033 822 True 238.666667 305 91.356333 2865 3231 3 chr1B.!!$R2 366

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.250510 TCCAAACGCAGGCATGTACA 60.251 50.0 0.00 0.00 0.00 2.90 F
970 1055 0.251634 CTCTTCTCCACTCCAAGGCC 59.748 60.0 0.00 0.00 0.00 5.19 F
2107 2247 0.037303 AACAGGGTGGTGCATGAGAG 59.963 55.0 0.00 0.00 0.00 3.20 F
2858 2998 0.182299 CCAGGGCTCTTGAAGGATCC 59.818 60.0 2.48 2.48 0.00 3.36 F
2977 3117 0.250209 CTGCCAGAGTTGTCAGCTGT 60.250 55.0 14.67 0.00 0.00 4.40 F
2978 3118 0.533531 TGCCAGAGTTGTCAGCTGTG 60.534 55.0 14.67 6.84 0.00 3.66 F
4910 5115 0.251341 CCAAGTTCCAAGGGGAGGTG 60.251 60.0 0.00 0.00 46.01 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2096 2236 0.534652 GATCAGGCCTCTCATGCACC 60.535 60.000 0.00 0.0 0.00 5.01 R
2132 2272 1.012841 CAATCTCTGCTTCGGCCTTC 58.987 55.000 0.00 0.0 40.91 3.46 R
3202 3398 0.663568 CGTCTGAACGCTTTCCTCGT 60.664 55.000 0.00 0.0 42.82 4.18 R
4414 4616 0.249120 TGACCTATCAGCACCCGTTG 59.751 55.000 0.00 0.0 0.00 4.10 R
4910 5115 1.226773 GGATTGCTGCATGTTCCGC 60.227 57.895 1.84 0.0 0.00 5.54 R
4968 5173 1.227497 CTTCGAGCTCCCTCATGCC 60.227 63.158 8.47 0.0 38.00 4.40 R
6133 6353 0.036388 CCAGAAAGGACCTGCGCTAA 60.036 55.000 9.73 0.0 41.22 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 0.250510 TCCAAACGCAGGCATGTACA 60.251 50.000 0.00 0.00 0.00 2.90
106 107 0.810648 CCAAACGCAGGCATGTACAT 59.189 50.000 1.41 1.41 0.00 2.29
109 110 2.394930 AACGCAGGCATGTACATGTA 57.605 45.000 31.10 0.08 40.80 2.29
110 111 1.651987 ACGCAGGCATGTACATGTAC 58.348 50.000 31.10 25.99 40.80 2.90
111 112 1.207089 ACGCAGGCATGTACATGTACT 59.793 47.619 31.10 26.06 40.80 2.73
112 113 2.429250 ACGCAGGCATGTACATGTACTA 59.571 45.455 31.10 19.85 40.80 1.82
188 202 1.568025 GCCAAACGTCCGAGTGAAC 59.432 57.895 0.00 0.00 0.00 3.18
279 293 2.560105 CCTTCCTTTCCCTCTGCTTTTG 59.440 50.000 0.00 0.00 0.00 2.44
280 294 2.292828 TCCTTTCCCTCTGCTTTTGG 57.707 50.000 0.00 0.00 0.00 3.28
281 295 1.780309 TCCTTTCCCTCTGCTTTTGGA 59.220 47.619 0.00 0.00 0.00 3.53
282 296 2.176798 TCCTTTCCCTCTGCTTTTGGAA 59.823 45.455 0.00 0.00 35.16 3.53
346 360 7.148340 CGATCATAAAAATATCTTCCTGAGCCC 60.148 40.741 0.00 0.00 0.00 5.19
363 377 6.238648 CCTGAGCCCGTTTCGAAAATAATAAT 60.239 38.462 13.10 0.00 0.00 1.28
365 379 7.632721 TGAGCCCGTTTCGAAAATAATAATAC 58.367 34.615 13.10 0.00 0.00 1.89
367 381 7.636326 AGCCCGTTTCGAAAATAATAATACTG 58.364 34.615 13.10 0.00 0.00 2.74
369 383 8.550376 GCCCGTTTCGAAAATAATAATACTGTA 58.450 33.333 13.10 0.00 0.00 2.74
389 403 7.456725 ACTGTAATATATCTTGCTGAGCCATT 58.543 34.615 0.23 0.00 0.00 3.16
407 421 3.969312 CCATTCTTTCCCCCATTAATGCT 59.031 43.478 10.11 0.00 0.00 3.79
416 430 1.891150 CCCATTAATGCTGCCTCATCC 59.109 52.381 10.11 0.00 0.00 3.51
445 459 5.390567 GCCTCGGGATTAACGCTAAATAATG 60.391 44.000 0.00 0.00 0.00 1.90
472 487 3.710209 CATGGACTGGAGTCTCCTTTT 57.290 47.619 19.82 3.92 44.20 2.27
473 488 4.026356 CATGGACTGGAGTCTCCTTTTT 57.974 45.455 19.82 1.41 44.20 1.94
474 489 3.771577 TGGACTGGAGTCTCCTTTTTC 57.228 47.619 19.82 10.01 44.20 2.29
475 490 3.318313 TGGACTGGAGTCTCCTTTTTCT 58.682 45.455 19.82 0.00 44.20 2.52
476 491 3.071602 TGGACTGGAGTCTCCTTTTTCTG 59.928 47.826 19.82 4.36 44.20 3.02
477 492 3.070748 GACTGGAGTCTCCTTTTTCTGC 58.929 50.000 19.82 0.00 41.65 4.26
478 493 2.708325 ACTGGAGTCTCCTTTTTCTGCT 59.292 45.455 19.82 0.00 37.46 4.24
479 494 3.072944 CTGGAGTCTCCTTTTTCTGCTG 58.927 50.000 19.82 0.00 37.46 4.41
480 495 2.224621 TGGAGTCTCCTTTTTCTGCTGG 60.225 50.000 19.82 0.00 37.46 4.85
481 496 2.039084 GGAGTCTCCTTTTTCTGCTGGA 59.961 50.000 12.02 0.00 32.53 3.86
482 497 3.333804 GAGTCTCCTTTTTCTGCTGGAG 58.666 50.000 0.00 0.00 45.36 3.86
483 498 2.708325 AGTCTCCTTTTTCTGCTGGAGT 59.292 45.455 7.61 0.00 44.57 3.85
484 499 3.137360 AGTCTCCTTTTTCTGCTGGAGTT 59.863 43.478 7.61 0.00 44.57 3.01
485 500 3.251972 GTCTCCTTTTTCTGCTGGAGTTG 59.748 47.826 7.61 0.00 44.57 3.16
486 501 3.136443 TCTCCTTTTTCTGCTGGAGTTGA 59.864 43.478 7.61 0.00 44.57 3.18
496 511 6.748333 TCTGCTGGAGTTGAAAAATCATAG 57.252 37.500 0.00 0.00 43.89 2.23
499 514 7.613022 TCTGCTGGAGTTGAAAAATCATAGATT 59.387 33.333 0.00 0.00 43.89 2.40
519 534 5.593095 AGATTCCACCACATTCAATCTGATG 59.407 40.000 0.00 0.00 33.48 3.07
607 635 2.095567 CAGAAGGAAACATGCAAGTCCG 60.096 50.000 0.00 0.00 35.19 4.79
610 638 2.306847 AGGAAACATGCAAGTCCGTTT 58.693 42.857 0.00 0.00 35.19 3.60
611 639 2.693074 AGGAAACATGCAAGTCCGTTTT 59.307 40.909 0.00 0.00 35.19 2.43
613 641 3.243401 GGAAACATGCAAGTCCGTTTTCT 60.243 43.478 0.00 0.00 31.98 2.52
637 666 2.170273 GAACGCGTTCAACTCCGC 59.830 61.111 39.21 16.22 46.10 5.54
799 854 1.746991 CGGGCTCCTTCCTTGCTTC 60.747 63.158 0.00 0.00 0.00 3.86
819 874 2.687842 CATCCTCTGCTTCGCTTCC 58.312 57.895 0.00 0.00 0.00 3.46
822 877 2.125753 CTCTGCTTCGCTTCCGCT 60.126 61.111 0.00 0.00 0.00 5.52
826 881 2.502726 GCTTCGCTTCCGCTTTGC 60.503 61.111 0.00 0.00 0.00 3.68
827 882 2.970974 GCTTCGCTTCCGCTTTGCT 61.971 57.895 0.00 0.00 0.00 3.91
829 884 2.245714 CTTCGCTTCCGCTTTGCTCC 62.246 60.000 0.00 0.00 0.00 4.70
830 885 4.152625 CGCTTCCGCTTTGCTCCG 62.153 66.667 0.00 0.00 0.00 4.63
831 886 4.467062 GCTTCCGCTTTGCTCCGC 62.467 66.667 0.00 0.00 0.00 5.54
832 887 3.804193 CTTCCGCTTTGCTCCGCC 61.804 66.667 0.00 0.00 0.00 6.13
890 950 3.607661 GAGGGAGATCCGGCCGAC 61.608 72.222 30.73 17.56 41.52 4.79
892 952 3.917760 GGGAGATCCGGCCGACAG 61.918 72.222 30.73 10.73 36.71 3.51
970 1055 0.251634 CTCTTCTCCACTCCAAGGCC 59.748 60.000 0.00 0.00 0.00 5.19
977 1062 1.898574 CACTCCAAGGCCGCTGTTT 60.899 57.895 0.00 0.00 0.00 2.83
982 1067 0.734889 CCAAGGCCGCTGTTTATCTG 59.265 55.000 0.00 0.00 0.00 2.90
1420 1546 5.711506 TCAACCAAGATGAACCGTACTAGTA 59.288 40.000 0.00 0.00 0.00 1.82
1421 1547 5.831702 ACCAAGATGAACCGTACTAGTAG 57.168 43.478 1.87 0.00 0.00 2.57
1422 1548 5.259632 ACCAAGATGAACCGTACTAGTAGT 58.740 41.667 8.14 8.14 0.00 2.73
1428 1554 6.483974 AGATGAACCGTACTAGTAGTCATCAG 59.516 42.308 27.40 8.10 35.33 2.90
1456 1582 1.512735 AGCTTCCTCCCATTAGGACC 58.487 55.000 0.00 0.00 45.49 4.46
1467 1593 2.210116 CATTAGGACCCGGTCAAATCG 58.790 52.381 19.43 9.01 33.68 3.34
1514 1640 6.533367 GGCAGTTTTCTTTTGTTCACATGTTA 59.467 34.615 0.00 0.00 0.00 2.41
1526 1652 8.518430 TTGTTCACATGTTACAATATATGCCT 57.482 30.769 15.76 0.00 0.00 4.75
1554 1680 5.882557 ACATATTGGACAGACTAGCTTTTGG 59.117 40.000 0.00 0.00 0.00 3.28
1588 1714 8.539544 TCATTGTTCACATCTTGAGGTATCTAA 58.460 33.333 0.00 0.00 34.94 2.10
2069 2209 6.432162 TGGATGACATTCTGAAGAGAAAAAGG 59.568 38.462 0.00 0.00 41.64 3.11
2078 2218 2.861147 AGAGAAAAAGGGAAGGGACG 57.139 50.000 0.00 0.00 0.00 4.79
2081 2221 1.583495 GAAAAAGGGAAGGGACGCCG 61.583 60.000 0.00 0.00 0.00 6.46
2096 2236 4.770874 CCGGGGCGTAACAGGGTG 62.771 72.222 0.00 0.00 0.00 4.61
2107 2247 0.037303 AACAGGGTGGTGCATGAGAG 59.963 55.000 0.00 0.00 0.00 3.20
2132 2272 5.642919 GCCTGATCCTAATATGAGCAAAGAG 59.357 44.000 0.00 0.00 0.00 2.85
2153 2293 1.821332 GGCCGAAGCAGAGATTGGG 60.821 63.158 0.00 0.00 42.56 4.12
2303 2443 3.057386 ACATGCAAGATGAATTTGACGCA 60.057 39.130 0.00 0.00 0.00 5.24
2345 2485 2.359850 GCCCGTGCCTTGATGACA 60.360 61.111 0.00 0.00 0.00 3.58
2834 2974 9.545105 CTCAAGCTAGTAGAAGATGAATTGAAT 57.455 33.333 0.00 0.00 0.00 2.57
2858 2998 0.182299 CCAGGGCTCTTGAAGGATCC 59.818 60.000 2.48 2.48 0.00 3.36
2963 3103 1.993701 TTGGTGCTGAAGACCTGCCA 61.994 55.000 0.00 0.00 38.75 4.92
2977 3117 0.250209 CTGCCAGAGTTGTCAGCTGT 60.250 55.000 14.67 0.00 0.00 4.40
2978 3118 0.533531 TGCCAGAGTTGTCAGCTGTG 60.534 55.000 14.67 6.84 0.00 3.66
2979 3119 0.533755 GCCAGAGTTGTCAGCTGTGT 60.534 55.000 14.67 0.00 0.00 3.72
2980 3120 1.506493 CCAGAGTTGTCAGCTGTGTC 58.494 55.000 14.67 6.49 0.00 3.67
2981 3121 1.202568 CCAGAGTTGTCAGCTGTGTCA 60.203 52.381 14.67 9.07 0.00 3.58
2982 3122 2.133553 CAGAGTTGTCAGCTGTGTCAG 58.866 52.381 14.67 0.00 34.12 3.51
3028 3168 4.102210 ACTGTCAGAAGATGTATCCATGGG 59.898 45.833 13.02 0.00 0.00 4.00
3076 3216 1.825474 GGACGGAGGAGAAATCAGTGA 59.175 52.381 0.00 0.00 0.00 3.41
3090 3286 1.613925 TCAGTGATATAGAGGCGCCAC 59.386 52.381 31.54 24.27 0.00 5.01
3143 3339 4.639310 CCCCAAAATCAAGATGACTCAGAG 59.361 45.833 0.00 0.00 0.00 3.35
3220 3416 1.061485 GACGAGGAAAGCGTTCAGAC 58.939 55.000 14.40 4.10 42.77 3.51
3291 3487 1.475280 CTGGCAACCATGTTGATCTGG 59.525 52.381 10.94 0.00 38.55 3.86
3299 3495 2.353011 CCATGTTGATCTGGTTGTTGGC 60.353 50.000 0.00 0.00 0.00 4.52
3473 3669 4.082895 CCCTCAGAAAGTCTCAATGCTTTG 60.083 45.833 5.99 5.99 35.35 2.77
3474 3670 4.474113 CTCAGAAAGTCTCAATGCTTTGC 58.526 43.478 7.44 0.00 35.35 3.68
3574 3770 4.763793 CCAAGACTTGAAGATTGATGGTGT 59.236 41.667 16.99 0.00 0.00 4.16
3626 3825 3.115390 CCAGGAGGAAGGATTTGGAGTA 58.885 50.000 0.00 0.00 36.89 2.59
3654 3853 2.352617 GGCGAATCACCAAAAGCAATCA 60.353 45.455 0.00 0.00 0.00 2.57
3656 3855 2.910482 CGAATCACCAAAAGCAATCACG 59.090 45.455 0.00 0.00 0.00 4.35
3674 3873 1.906574 ACGGAGATTGGTTTAGCTGGA 59.093 47.619 0.00 0.00 0.00 3.86
3685 3884 3.127721 GGTTTAGCTGGATCTGCAAACTC 59.872 47.826 21.55 15.19 34.08 3.01
3688 3887 1.093159 GCTGGATCTGCAAACTCTGG 58.907 55.000 6.41 0.00 0.00 3.86
3710 3909 3.397849 AGTTTCGGTGAAGAAGGTACC 57.602 47.619 2.73 2.73 0.00 3.34
3714 3913 3.618171 GGTGAAGAAGGTACCGCAA 57.382 52.632 6.18 0.00 0.00 4.85
3729 3928 2.989422 CGCAAGGAAAAATTCGTCCT 57.011 45.000 4.40 4.40 46.62 3.85
3731 3930 2.225491 CGCAAGGAAAAATTCGTCCTCA 59.775 45.455 9.69 0.00 43.75 3.86
3741 3940 1.919240 TTCGTCCTCAGAAGGTGCTA 58.081 50.000 0.00 0.00 43.82 3.49
3779 3978 3.503800 GGTAAGAACCTGGACCTTTGT 57.496 47.619 0.00 0.00 43.08 2.83
3845 4044 1.692411 GTGGCCAACTTGTTTCTCCT 58.308 50.000 7.24 0.00 0.00 3.69
3850 4049 3.004419 GGCCAACTTGTTTCTCCTGTAAC 59.996 47.826 0.00 0.00 0.00 2.50
3996 4198 3.383185 AGCTAGAGATTCTGAGGAAACCG 59.617 47.826 0.00 0.00 34.90 4.44
4065 4267 6.990939 AGATATGGTCAATCACACTTCTGATG 59.009 38.462 0.00 0.00 30.92 3.07
4070 4272 4.391216 GTCAATCACACTTCTGATGGTCAG 59.609 45.833 0.55 0.55 45.59 3.51
4301 4503 5.079689 TGGAAAAGAAAAACCAGGAACAC 57.920 39.130 0.00 0.00 0.00 3.32
4402 4604 3.295973 GCCTACTGGACTCTTCAGAGAT 58.704 50.000 10.93 0.00 44.79 2.75
4414 4616 1.195115 TCAGAGATGCCACCCAGTAC 58.805 55.000 0.00 0.00 0.00 2.73
4417 4619 1.279271 AGAGATGCCACCCAGTACAAC 59.721 52.381 0.00 0.00 0.00 3.32
4430 4632 1.480954 AGTACAACGGGTGCTGATAGG 59.519 52.381 0.00 0.00 41.25 2.57
4463 4665 8.286097 CAGACTTTGGTTAGAGAACTTTCAATC 58.714 37.037 0.00 0.00 35.74 2.67
4475 4677 5.823045 AGAACTTTCAATCGTGAAGGAAACT 59.177 36.000 5.68 0.43 44.49 2.66
4496 4698 1.783711 GATTCGAGCTACACTGATGCG 59.216 52.381 0.00 0.00 0.00 4.73
4636 4838 3.843422 ACAGCAGATATCAGGAGCTACT 58.157 45.455 5.32 0.00 33.59 2.57
4645 4847 3.963428 TCAGGAGCTACTGAAGGAAAC 57.037 47.619 26.87 0.00 44.03 2.78
4760 4965 5.630121 ACTGAAGTGGATGTATGGTTTGAA 58.370 37.500 0.00 0.00 0.00 2.69
4802 5007 2.127118 CTGCAGCTCAAAACCGCG 60.127 61.111 0.00 0.00 0.00 6.46
4910 5115 0.251341 CCAAGTTCCAAGGGGAGGTG 60.251 60.000 0.00 0.00 46.01 4.00
5045 5250 2.795297 GAGCTCTCGTCGTCCAGG 59.205 66.667 6.43 0.00 0.00 4.45
5046 5251 3.404141 GAGCTCTCGTCGTCCAGGC 62.404 68.421 6.43 0.00 0.00 4.85
5120 5325 0.036010 ATTTCCCGAGCAGACACAGG 60.036 55.000 0.00 0.00 0.00 4.00
5189 5394 1.822990 CTGTTTGCCTGCATCAATCCT 59.177 47.619 0.00 0.00 0.00 3.24
5233 5440 1.028130 TTTTGAGGTGCGTGCATCAA 58.972 45.000 7.97 7.28 0.00 2.57
5352 5559 7.467623 CAGTGAATAGAATGCTGAAGTAAACC 58.532 38.462 0.00 0.00 0.00 3.27
5359 5569 4.559862 ATGCTGAAGTAAACCTGTAGCT 57.440 40.909 0.00 0.00 35.23 3.32
5369 5579 2.770164 ACCTGTAGCTGCGAAGATTT 57.230 45.000 0.00 0.00 0.00 2.17
5375 5585 1.061570 GCTGCGAAGATTTGGCTCG 59.938 57.895 0.00 0.00 35.24 5.03
5387 5597 2.871096 TTGGCTCGTTATTTCCAGGT 57.129 45.000 0.00 0.00 0.00 4.00
5423 5633 9.543018 GATTTATTCTTTACAGAAACTCCGTTG 57.457 33.333 0.00 0.00 42.53 4.10
5435 5645 0.456312 CTCCGTTGTAGTCGAGTGGC 60.456 60.000 2.10 0.00 0.00 5.01
5438 5648 1.874345 CGTTGTAGTCGAGTGGCCCT 61.874 60.000 0.00 0.00 0.00 5.19
5473 5683 4.082733 GGGAACACAGAATTACCTTGCTTC 60.083 45.833 0.00 0.00 0.00 3.86
5474 5684 4.762251 GGAACACAGAATTACCTTGCTTCT 59.238 41.667 0.00 0.00 0.00 2.85
5475 5685 5.106515 GGAACACAGAATTACCTTGCTTCTC 60.107 44.000 0.00 0.00 0.00 2.87
5584 5795 5.991328 TCAACTTTCAAGAGCTGTGTTAG 57.009 39.130 0.00 0.00 0.00 2.34
5604 5818 6.600032 TGTTAGCTTTTGGTTTGTGAGAGTAA 59.400 34.615 0.00 0.00 0.00 2.24
5607 5821 7.817418 AGCTTTTGGTTTGTGAGAGTAATTA 57.183 32.000 0.00 0.00 0.00 1.40
5614 5828 7.506114 TGGTTTGTGAGAGTAATTACAAGAGT 58.494 34.615 17.65 0.00 34.86 3.24
5619 5833 5.578727 GTGAGAGTAATTACAAGAGTGCAGG 59.421 44.000 17.65 0.00 0.00 4.85
5665 5879 4.889409 TGGAAGGAGCATTATCATGGTTTC 59.111 41.667 0.00 0.00 41.38 2.78
5666 5880 5.136105 GGAAGGAGCATTATCATGGTTTCT 58.864 41.667 0.00 0.00 41.38 2.52
5676 5890 7.512297 CATTATCATGGTTTCTTGTTTTGCAC 58.488 34.615 0.00 0.00 0.00 4.57
5698 5912 6.512297 CACTGTAATAAGGTTTGGTGCTTTT 58.488 36.000 0.00 0.00 0.00 2.27
5705 5919 4.071961 AGGTTTGGTGCTTTTTCCATTC 57.928 40.909 0.00 0.00 33.50 2.67
5708 5922 4.821260 GGTTTGGTGCTTTTTCCATTCATT 59.179 37.500 0.00 0.00 33.50 2.57
5716 5930 6.205270 GTGCTTTTTCCATTCATTTCATTGGT 59.795 34.615 0.00 0.00 0.00 3.67
5719 5933 7.255208 GCTTTTTCCATTCATTTCATTGGTTGT 60.255 33.333 0.00 0.00 0.00 3.32
5727 5941 0.482446 TTCATTGGTTGTCCTGCCCT 59.518 50.000 0.00 0.00 34.23 5.19
5746 5960 7.256691 CCTGCCCTGTAGATTTATACTGGTTAT 60.257 40.741 7.29 0.00 41.03 1.89
5747 5961 8.041143 TGCCCTGTAGATTTATACTGGTTATT 57.959 34.615 7.29 0.00 41.03 1.40
5748 5962 9.161572 TGCCCTGTAGATTTATACTGGTTATTA 57.838 33.333 7.29 0.00 41.03 0.98
5768 5982 0.916086 TATGTTCCGTTCATGGGCCT 59.084 50.000 4.53 0.00 0.00 5.19
5796 6014 3.370104 TCCTTTTGTGTTGTGAATGGGT 58.630 40.909 0.00 0.00 0.00 4.51
5863 6083 3.198635 CCATACTGAGAACACCTGGTGAT 59.801 47.826 32.30 21.79 36.96 3.06
5869 6089 2.614259 AGAACACCTGGTGATCTCAGT 58.386 47.619 32.30 11.81 40.72 3.41
5870 6090 3.779444 AGAACACCTGGTGATCTCAGTA 58.221 45.455 32.30 0.00 40.72 2.74
5886 6106 1.938577 CAGTATGCTCACAGGCACATC 59.061 52.381 0.00 0.00 45.36 3.06
5887 6107 0.933097 GTATGCTCACAGGCACATCG 59.067 55.000 0.00 0.00 45.36 3.84
5893 6113 1.995484 CTCACAGGCACATCGTACTTG 59.005 52.381 0.00 0.00 0.00 3.16
5920 6140 5.508200 TTTACAACTCTGATTTTGGCGTT 57.492 34.783 4.69 0.00 0.00 4.84
5933 6153 7.756558 TGATTTTGGCGTTGATTTTTCTTTTT 58.243 26.923 0.00 0.00 0.00 1.94
5934 6154 8.883731 TGATTTTGGCGTTGATTTTTCTTTTTA 58.116 25.926 0.00 0.00 0.00 1.52
5935 6155 9.709600 GATTTTGGCGTTGATTTTTCTTTTTAA 57.290 25.926 0.00 0.00 0.00 1.52
5951 6171 6.055588 TCTTTTTAATTGAGGATCTAGGCGG 58.944 40.000 0.00 0.00 34.92 6.13
5962 6182 1.332195 TCTAGGCGGTGATCCATCAG 58.668 55.000 0.00 0.00 37.51 2.90
5963 6183 1.043816 CTAGGCGGTGATCCATCAGT 58.956 55.000 0.00 0.00 37.51 3.41
5975 6195 7.095481 CGGTGATCCATCAGTATAGTTCATTTG 60.095 40.741 0.00 0.00 37.51 2.32
5976 6196 7.173907 GGTGATCCATCAGTATAGTTCATTTGG 59.826 40.741 0.00 0.00 37.51 3.28
5977 6197 7.173907 GTGATCCATCAGTATAGTTCATTTGGG 59.826 40.741 0.00 0.00 37.51 4.12
5978 6198 5.376625 TCCATCAGTATAGTTCATTTGGGC 58.623 41.667 0.00 0.00 0.00 5.36
5979 6199 5.132648 TCCATCAGTATAGTTCATTTGGGCT 59.867 40.000 0.00 0.00 0.00 5.19
5980 6200 5.240183 CCATCAGTATAGTTCATTTGGGCTG 59.760 44.000 0.00 0.00 0.00 4.85
5981 6201 4.780815 TCAGTATAGTTCATTTGGGCTGG 58.219 43.478 0.00 0.00 0.00 4.85
5982 6202 4.227300 TCAGTATAGTTCATTTGGGCTGGT 59.773 41.667 0.00 0.00 0.00 4.00
5983 6203 4.949856 CAGTATAGTTCATTTGGGCTGGTT 59.050 41.667 0.00 0.00 0.00 3.67
5984 6204 6.069905 TCAGTATAGTTCATTTGGGCTGGTTA 60.070 38.462 0.00 0.00 0.00 2.85
5985 6205 6.038271 CAGTATAGTTCATTTGGGCTGGTTAC 59.962 42.308 0.00 0.00 0.00 2.50
5986 6206 3.525800 AGTTCATTTGGGCTGGTTACT 57.474 42.857 0.00 0.00 0.00 2.24
5987 6207 3.157087 AGTTCATTTGGGCTGGTTACTG 58.843 45.455 0.00 0.00 0.00 2.74
5988 6208 2.214376 TCATTTGGGCTGGTTACTGG 57.786 50.000 0.00 0.00 0.00 4.00
5989 6209 1.185315 CATTTGGGCTGGTTACTGGG 58.815 55.000 0.00 0.00 0.00 4.45
5990 6210 1.080638 ATTTGGGCTGGTTACTGGGA 58.919 50.000 0.00 0.00 0.00 4.37
5991 6211 0.111639 TTTGGGCTGGTTACTGGGAC 59.888 55.000 0.00 0.00 0.00 4.46
5992 6212 0.770557 TTGGGCTGGTTACTGGGACT 60.771 55.000 0.00 0.00 0.00 3.85
5993 6213 0.770557 TGGGCTGGTTACTGGGACTT 60.771 55.000 0.00 0.00 0.00 3.01
5994 6214 0.404426 GGGCTGGTTACTGGGACTTT 59.596 55.000 0.00 0.00 0.00 2.66
5995 6215 1.203013 GGGCTGGTTACTGGGACTTTT 60.203 52.381 0.00 0.00 0.00 2.27
5996 6216 2.594131 GGCTGGTTACTGGGACTTTTT 58.406 47.619 0.00 0.00 0.00 1.94
6017 6237 4.715534 TTTTGACATCAGGTTAGTGGGA 57.284 40.909 0.00 0.00 0.00 4.37
6018 6238 3.981071 TTGACATCAGGTTAGTGGGAG 57.019 47.619 0.00 0.00 0.00 4.30
6019 6239 2.902608 TGACATCAGGTTAGTGGGAGT 58.097 47.619 0.00 0.00 0.00 3.85
6020 6240 3.248024 TGACATCAGGTTAGTGGGAGTT 58.752 45.455 0.00 0.00 0.00 3.01
6021 6241 3.650942 TGACATCAGGTTAGTGGGAGTTT 59.349 43.478 0.00 0.00 0.00 2.66
6022 6242 4.254492 GACATCAGGTTAGTGGGAGTTTC 58.746 47.826 0.00 0.00 0.00 2.78
6023 6243 3.910627 ACATCAGGTTAGTGGGAGTTTCT 59.089 43.478 0.00 0.00 0.00 2.52
6024 6244 5.091552 ACATCAGGTTAGTGGGAGTTTCTA 58.908 41.667 0.00 0.00 0.00 2.10
6025 6245 5.546499 ACATCAGGTTAGTGGGAGTTTCTAA 59.454 40.000 0.00 0.00 0.00 2.10
6026 6246 6.215636 ACATCAGGTTAGTGGGAGTTTCTAAT 59.784 38.462 0.00 0.00 0.00 1.73
6027 6247 7.402071 ACATCAGGTTAGTGGGAGTTTCTAATA 59.598 37.037 0.00 0.00 0.00 0.98
6028 6248 7.179076 TCAGGTTAGTGGGAGTTTCTAATAC 57.821 40.000 0.00 0.00 0.00 1.89
6029 6249 6.155737 TCAGGTTAGTGGGAGTTTCTAATACC 59.844 42.308 0.00 0.00 0.00 2.73
6030 6250 6.027482 AGGTTAGTGGGAGTTTCTAATACCA 58.973 40.000 0.00 0.00 0.00 3.25
6031 6251 6.677076 AGGTTAGTGGGAGTTTCTAATACCAT 59.323 38.462 0.00 0.00 0.00 3.55
6032 6252 6.766467 GGTTAGTGGGAGTTTCTAATACCATG 59.234 42.308 0.00 0.00 0.00 3.66
6033 6253 7.336396 GTTAGTGGGAGTTTCTAATACCATGT 58.664 38.462 0.00 0.00 0.00 3.21
6034 6254 5.745227 AGTGGGAGTTTCTAATACCATGTG 58.255 41.667 0.00 0.00 0.00 3.21
6035 6255 4.335594 GTGGGAGTTTCTAATACCATGTGC 59.664 45.833 0.00 0.00 0.00 4.57
6036 6256 4.227300 TGGGAGTTTCTAATACCATGTGCT 59.773 41.667 0.00 0.00 0.00 4.40
6037 6257 4.576463 GGGAGTTTCTAATACCATGTGCTG 59.424 45.833 0.00 0.00 0.00 4.41
6038 6258 4.035675 GGAGTTTCTAATACCATGTGCTGC 59.964 45.833 0.00 0.00 0.00 5.25
6039 6259 4.588899 AGTTTCTAATACCATGTGCTGCA 58.411 39.130 0.00 0.00 0.00 4.41
6040 6260 5.195940 AGTTTCTAATACCATGTGCTGCAT 58.804 37.500 5.27 0.00 38.60 3.96
6041 6261 5.297776 AGTTTCTAATACCATGTGCTGCATC 59.702 40.000 5.27 0.09 35.19 3.91
6042 6262 3.743521 TCTAATACCATGTGCTGCATCC 58.256 45.455 5.27 0.00 35.19 3.51
6043 6263 2.742428 AATACCATGTGCTGCATCCT 57.258 45.000 5.27 0.00 35.19 3.24
6044 6264 2.742428 ATACCATGTGCTGCATCCTT 57.258 45.000 5.27 0.00 35.19 3.36
6045 6265 2.512692 TACCATGTGCTGCATCCTTT 57.487 45.000 5.27 0.00 35.19 3.11
6046 6266 1.180029 ACCATGTGCTGCATCCTTTC 58.820 50.000 5.27 0.00 35.19 2.62
6047 6267 1.272313 ACCATGTGCTGCATCCTTTCT 60.272 47.619 5.27 0.00 35.19 2.52
6048 6268 1.134367 CCATGTGCTGCATCCTTTCTG 59.866 52.381 5.27 0.00 35.19 3.02
6049 6269 1.816835 CATGTGCTGCATCCTTTCTGT 59.183 47.619 5.27 0.00 35.19 3.41
6050 6270 1.241165 TGTGCTGCATCCTTTCTGTG 58.759 50.000 5.27 0.00 0.00 3.66
6051 6271 1.202794 TGTGCTGCATCCTTTCTGTGA 60.203 47.619 5.27 0.00 0.00 3.58
6052 6272 1.198637 GTGCTGCATCCTTTCTGTGAC 59.801 52.381 5.27 0.00 0.00 3.67
6053 6273 1.072806 TGCTGCATCCTTTCTGTGACT 59.927 47.619 0.00 0.00 0.00 3.41
6054 6274 1.467734 GCTGCATCCTTTCTGTGACTG 59.532 52.381 0.00 0.00 0.00 3.51
6055 6275 1.467734 CTGCATCCTTTCTGTGACTGC 59.532 52.381 0.00 0.00 0.00 4.40
6056 6276 0.807496 GCATCCTTTCTGTGACTGCC 59.193 55.000 0.00 0.00 0.00 4.85
6057 6277 1.883638 GCATCCTTTCTGTGACTGCCA 60.884 52.381 0.00 0.00 0.00 4.92
6058 6278 2.507484 CATCCTTTCTGTGACTGCCAA 58.493 47.619 0.00 0.00 0.00 4.52
6059 6279 1.967319 TCCTTTCTGTGACTGCCAAC 58.033 50.000 0.00 0.00 0.00 3.77
6060 6280 0.954452 CCTTTCTGTGACTGCCAACC 59.046 55.000 0.00 0.00 0.00 3.77
6061 6281 1.477558 CCTTTCTGTGACTGCCAACCT 60.478 52.381 0.00 0.00 0.00 3.50
6062 6282 1.605710 CTTTCTGTGACTGCCAACCTG 59.394 52.381 0.00 0.00 0.00 4.00
6063 6283 0.179020 TTCTGTGACTGCCAACCTGG 60.179 55.000 0.00 0.00 41.55 4.45
6077 6297 4.473520 CTGGCCCCGTGCGATTCT 62.474 66.667 0.00 0.00 42.61 2.40
6078 6298 4.776322 TGGCCCCGTGCGATTCTG 62.776 66.667 0.00 0.00 42.61 3.02
6079 6299 4.778143 GGCCCCGTGCGATTCTGT 62.778 66.667 0.00 0.00 42.61 3.41
6080 6300 3.499737 GCCCCGTGCGATTCTGTG 61.500 66.667 0.00 0.00 0.00 3.66
6081 6301 2.047274 CCCCGTGCGATTCTGTGT 60.047 61.111 0.00 0.00 0.00 3.72
6082 6302 2.390599 CCCCGTGCGATTCTGTGTG 61.391 63.158 0.00 0.00 0.00 3.82
6083 6303 1.374125 CCCGTGCGATTCTGTGTGA 60.374 57.895 0.00 0.00 0.00 3.58
6084 6304 1.626654 CCCGTGCGATTCTGTGTGAC 61.627 60.000 0.00 0.00 0.00 3.67
6085 6305 0.943835 CCGTGCGATTCTGTGTGACA 60.944 55.000 0.00 0.00 0.00 3.58
6086 6306 0.858583 CGTGCGATTCTGTGTGACAA 59.141 50.000 0.00 0.00 0.00 3.18
6087 6307 1.136529 CGTGCGATTCTGTGTGACAAG 60.137 52.381 0.00 0.00 0.00 3.16
6088 6308 1.195448 GTGCGATTCTGTGTGACAAGG 59.805 52.381 0.00 0.00 0.00 3.61
6089 6309 0.166814 GCGATTCTGTGTGACAAGGC 59.833 55.000 0.00 0.00 0.00 4.35
6090 6310 1.511850 CGATTCTGTGTGACAAGGCA 58.488 50.000 0.00 0.00 0.00 4.75
6091 6311 2.079158 CGATTCTGTGTGACAAGGCAT 58.921 47.619 0.00 0.00 0.00 4.40
6092 6312 3.261580 CGATTCTGTGTGACAAGGCATA 58.738 45.455 0.00 0.00 0.00 3.14
6093 6313 3.684305 CGATTCTGTGTGACAAGGCATAA 59.316 43.478 0.00 0.00 0.00 1.90
6094 6314 4.201753 CGATTCTGTGTGACAAGGCATAAG 60.202 45.833 0.00 0.00 0.00 1.73
6095 6315 2.426522 TCTGTGTGACAAGGCATAAGC 58.573 47.619 0.00 0.00 41.10 3.09
6108 6328 3.687572 GCATAAGCCAATCACACAGAG 57.312 47.619 0.00 0.00 33.58 3.35
6109 6329 2.223433 GCATAAGCCAATCACACAGAGC 60.223 50.000 0.00 0.00 33.58 4.09
6110 6330 3.276857 CATAAGCCAATCACACAGAGCT 58.723 45.455 0.00 0.00 0.00 4.09
6111 6331 1.531423 AAGCCAATCACACAGAGCTG 58.469 50.000 0.00 0.00 0.00 4.24
6112 6332 0.959372 AGCCAATCACACAGAGCTGC 60.959 55.000 0.00 0.00 0.00 5.25
6113 6333 1.792301 CCAATCACACAGAGCTGCG 59.208 57.895 0.00 0.00 0.00 5.18
6114 6334 0.952497 CCAATCACACAGAGCTGCGT 60.952 55.000 0.00 0.00 0.00 5.24
6115 6335 0.165295 CAATCACACAGAGCTGCGTG 59.835 55.000 11.37 11.37 43.00 5.34
6116 6336 1.572085 AATCACACAGAGCTGCGTGC 61.572 55.000 12.48 0.00 41.81 5.34
6139 6359 3.904479 GGCTGCCCCAATTAGCGC 61.904 66.667 7.66 0.00 38.31 5.92
6140 6360 3.140141 GCTGCCCCAATTAGCGCA 61.140 61.111 11.47 0.00 0.00 6.09
6141 6361 3.113745 CTGCCCCAATTAGCGCAG 58.886 61.111 11.47 0.00 42.42 5.18
6142 6362 2.440065 TGCCCCAATTAGCGCAGG 60.440 61.111 11.47 2.76 0.00 4.85
6143 6363 2.440247 GCCCCAATTAGCGCAGGT 60.440 61.111 11.47 0.00 44.89 4.00
6144 6364 2.481471 GCCCCAATTAGCGCAGGTC 61.481 63.158 11.47 0.00 40.68 3.85
6145 6365 1.823899 CCCCAATTAGCGCAGGTCC 60.824 63.158 11.47 0.00 40.68 4.46
6146 6366 1.224592 CCCAATTAGCGCAGGTCCT 59.775 57.895 11.47 0.00 40.68 3.85
6147 6367 0.394352 CCCAATTAGCGCAGGTCCTT 60.394 55.000 11.47 0.00 40.68 3.36
6148 6368 1.463674 CCAATTAGCGCAGGTCCTTT 58.536 50.000 11.47 0.00 40.68 3.11
6149 6369 1.401905 CCAATTAGCGCAGGTCCTTTC 59.598 52.381 11.47 0.00 40.68 2.62
6150 6370 2.359900 CAATTAGCGCAGGTCCTTTCT 58.640 47.619 11.47 0.00 40.68 2.52
6151 6371 2.029838 ATTAGCGCAGGTCCTTTCTG 57.970 50.000 11.47 0.00 40.68 3.02
6152 6372 0.036388 TTAGCGCAGGTCCTTTCTGG 60.036 55.000 11.47 0.00 40.68 3.86
6153 6373 1.192146 TAGCGCAGGTCCTTTCTGGT 61.192 55.000 11.47 0.00 40.68 4.00
6154 6374 1.600916 GCGCAGGTCCTTTCTGGTT 60.601 57.895 0.30 0.00 37.07 3.67
6155 6375 1.172812 GCGCAGGTCCTTTCTGGTTT 61.173 55.000 0.30 0.00 37.07 3.27
6156 6376 1.318576 CGCAGGTCCTTTCTGGTTTT 58.681 50.000 0.00 0.00 37.07 2.43
6157 6377 2.500229 CGCAGGTCCTTTCTGGTTTTA 58.500 47.619 0.00 0.00 37.07 1.52
6158 6378 2.484264 CGCAGGTCCTTTCTGGTTTTAG 59.516 50.000 0.00 0.00 37.07 1.85
6159 6379 2.820197 GCAGGTCCTTTCTGGTTTTAGG 59.180 50.000 0.00 0.00 37.07 2.69
6160 6380 3.497942 GCAGGTCCTTTCTGGTTTTAGGA 60.498 47.826 0.00 0.00 37.07 2.94
6161 6381 4.725490 CAGGTCCTTTCTGGTTTTAGGAA 58.275 43.478 0.00 0.00 38.46 3.36
6162 6382 4.762251 CAGGTCCTTTCTGGTTTTAGGAAG 59.238 45.833 0.00 0.00 38.46 3.46
6165 6385 2.488153 CCTTTCTGGTTTTAGGAAGGCG 59.512 50.000 0.16 0.00 44.38 5.52
6166 6386 2.943036 TTCTGGTTTTAGGAAGGCGT 57.057 45.000 0.00 0.00 0.00 5.68
6167 6387 4.320870 CTTTCTGGTTTTAGGAAGGCGTA 58.679 43.478 0.00 0.00 30.94 4.42
6168 6388 4.563140 TTCTGGTTTTAGGAAGGCGTAT 57.437 40.909 0.00 0.00 0.00 3.06
6169 6389 4.563140 TCTGGTTTTAGGAAGGCGTATT 57.437 40.909 0.00 0.00 0.00 1.89
6170 6390 4.913784 TCTGGTTTTAGGAAGGCGTATTT 58.086 39.130 0.00 0.00 0.00 1.40
6171 6391 5.318630 TCTGGTTTTAGGAAGGCGTATTTT 58.681 37.500 0.00 0.00 0.00 1.82
6172 6392 5.771165 TCTGGTTTTAGGAAGGCGTATTTTT 59.229 36.000 0.00 0.00 0.00 1.94
6191 6411 3.581265 TTTTTAGGGTGGAAGGTTCGT 57.419 42.857 0.00 0.00 0.00 3.85
6192 6412 4.703379 TTTTTAGGGTGGAAGGTTCGTA 57.297 40.909 0.00 0.00 0.00 3.43
6193 6413 4.914177 TTTTAGGGTGGAAGGTTCGTAT 57.086 40.909 0.00 0.00 0.00 3.06
6194 6414 4.914177 TTTAGGGTGGAAGGTTCGTATT 57.086 40.909 0.00 0.00 0.00 1.89
6195 6415 4.914177 TTAGGGTGGAAGGTTCGTATTT 57.086 40.909 0.00 0.00 0.00 1.40
6196 6416 6.371595 TTTAGGGTGGAAGGTTCGTATTTA 57.628 37.500 0.00 0.00 0.00 1.40
6197 6417 6.564557 TTAGGGTGGAAGGTTCGTATTTAT 57.435 37.500 0.00 0.00 0.00 1.40
6198 6418 7.673641 TTAGGGTGGAAGGTTCGTATTTATA 57.326 36.000 0.00 0.00 0.00 0.98
6199 6419 6.758806 AGGGTGGAAGGTTCGTATTTATAT 57.241 37.500 0.00 0.00 0.00 0.86
6200 6420 7.145474 AGGGTGGAAGGTTCGTATTTATATT 57.855 36.000 0.00 0.00 0.00 1.28
6201 6421 7.580007 AGGGTGGAAGGTTCGTATTTATATTT 58.420 34.615 0.00 0.00 0.00 1.40
6202 6422 8.057011 AGGGTGGAAGGTTCGTATTTATATTTT 58.943 33.333 0.00 0.00 0.00 1.82
6203 6423 8.689061 GGGTGGAAGGTTCGTATTTATATTTTT 58.311 33.333 0.00 0.00 0.00 1.94
6256 6476 7.576861 TTTTTCCTGTCCGTTTTTATCTCTT 57.423 32.000 0.00 0.00 0.00 2.85
6257 6477 6.796705 TTTCCTGTCCGTTTTTATCTCTTC 57.203 37.500 0.00 0.00 0.00 2.87
6258 6478 5.740290 TCCTGTCCGTTTTTATCTCTTCT 57.260 39.130 0.00 0.00 0.00 2.85
6259 6479 6.110411 TCCTGTCCGTTTTTATCTCTTCTT 57.890 37.500 0.00 0.00 0.00 2.52
6260 6480 6.531021 TCCTGTCCGTTTTTATCTCTTCTTT 58.469 36.000 0.00 0.00 0.00 2.52
6261 6481 7.673180 TCCTGTCCGTTTTTATCTCTTCTTTA 58.327 34.615 0.00 0.00 0.00 1.85
6262 6482 8.152246 TCCTGTCCGTTTTTATCTCTTCTTTAA 58.848 33.333 0.00 0.00 0.00 1.52
6263 6483 8.228464 CCTGTCCGTTTTTATCTCTTCTTTAAC 58.772 37.037 0.00 0.00 0.00 2.01
6264 6484 8.897872 TGTCCGTTTTTATCTCTTCTTTAACT 57.102 30.769 0.00 0.00 0.00 2.24
6265 6485 9.985730 TGTCCGTTTTTATCTCTTCTTTAACTA 57.014 29.630 0.00 0.00 0.00 2.24
6334 6554 9.626045 CTAAAGGACTTTCATGTTTTATGTTCC 57.374 33.333 0.00 0.00 34.23 3.62
6335 6555 7.595819 AAGGACTTTCATGTTTTATGTTCCA 57.404 32.000 0.00 0.00 0.00 3.53
6336 6556 7.595819 AGGACTTTCATGTTTTATGTTCCAA 57.404 32.000 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.202503 TGAGGAAGGTTTGAAAGATGCTCT 60.203 41.667 7.29 0.00 0.00 4.09
28 29 3.189287 CCGTGATGAGGAAGGTTTGAAAG 59.811 47.826 0.00 0.00 0.00 2.62
105 106 7.465916 CGCTTTGCTGATTTGTACATAGTACAT 60.466 37.037 10.44 0.00 0.00 2.29
106 107 6.183360 CGCTTTGCTGATTTGTACATAGTACA 60.183 38.462 5.94 5.94 0.00 2.90
109 110 4.935205 TCGCTTTGCTGATTTGTACATAGT 59.065 37.500 0.00 0.00 0.00 2.12
110 111 5.469373 TCGCTTTGCTGATTTGTACATAG 57.531 39.130 0.00 0.00 0.00 2.23
111 112 4.332543 CCTCGCTTTGCTGATTTGTACATA 59.667 41.667 0.00 0.00 0.00 2.29
112 113 3.127548 CCTCGCTTTGCTGATTTGTACAT 59.872 43.478 0.00 0.00 0.00 2.29
181 195 3.282885 GGGAAAGATGATGGGTTCACTC 58.717 50.000 0.00 0.00 37.11 3.51
188 202 2.659428 GTCAAGGGGAAAGATGATGGG 58.341 52.381 0.00 0.00 0.00 4.00
282 296 4.512571 GGTGCAAAAGCACATCTGATTTTT 59.487 37.500 20.51 0.00 42.09 1.94
293 307 0.319813 GTGATGGGGTGCAAAAGCAC 60.320 55.000 11.87 11.87 39.72 4.40
303 317 1.771565 TCGATAACGAGTGATGGGGT 58.228 50.000 0.00 0.00 43.81 4.95
363 377 7.539034 TGGCTCAGCAAGATATATTACAGTA 57.461 36.000 0.00 0.00 0.00 2.74
365 379 7.823310 AGAATGGCTCAGCAAGATATATTACAG 59.177 37.037 0.00 0.00 0.00 2.74
367 381 8.558973 AAGAATGGCTCAGCAAGATATATTAC 57.441 34.615 0.00 0.00 0.00 1.89
369 383 7.176340 GGAAAGAATGGCTCAGCAAGATATATT 59.824 37.037 0.00 0.00 0.00 1.28
370 384 6.658391 GGAAAGAATGGCTCAGCAAGATATAT 59.342 38.462 0.00 0.00 0.00 0.86
372 386 4.826183 GGAAAGAATGGCTCAGCAAGATAT 59.174 41.667 0.00 0.00 0.00 1.63
373 387 4.202441 GGAAAGAATGGCTCAGCAAGATA 58.798 43.478 0.00 0.00 0.00 1.98
374 388 3.022406 GGAAAGAATGGCTCAGCAAGAT 58.978 45.455 0.00 0.00 0.00 2.40
375 389 2.440409 GGAAAGAATGGCTCAGCAAGA 58.560 47.619 0.00 0.00 0.00 3.02
376 390 1.475682 GGGAAAGAATGGCTCAGCAAG 59.524 52.381 0.00 0.00 0.00 4.01
377 391 1.549203 GGGAAAGAATGGCTCAGCAA 58.451 50.000 0.00 0.00 0.00 3.91
378 392 0.323725 GGGGAAAGAATGGCTCAGCA 60.324 55.000 0.00 0.00 0.00 4.41
379 393 1.039785 GGGGGAAAGAATGGCTCAGC 61.040 60.000 0.00 0.00 0.00 4.26
380 394 0.332632 TGGGGGAAAGAATGGCTCAG 59.667 55.000 0.00 0.00 0.00 3.35
389 403 2.387757 GCAGCATTAATGGGGGAAAGA 58.612 47.619 17.02 0.00 0.00 2.52
407 421 0.749091 CGAGGCAAATGGATGAGGCA 60.749 55.000 0.00 0.00 0.00 4.75
416 430 1.268539 GCGTTAATCCCGAGGCAAATG 60.269 52.381 0.00 0.00 0.00 2.32
465 480 7.899747 ATTTTTCAACTCCAGCAGAAAAAGGAG 60.900 37.037 17.40 5.82 46.60 3.69
466 481 3.576078 TCAACTCCAGCAGAAAAAGGA 57.424 42.857 0.00 0.00 0.00 3.36
467 482 4.654091 TTTCAACTCCAGCAGAAAAAGG 57.346 40.909 0.00 0.00 0.00 3.11
468 483 6.757947 TGATTTTTCAACTCCAGCAGAAAAAG 59.242 34.615 17.40 0.00 46.60 2.27
470 485 6.219417 TGATTTTTCAACTCCAGCAGAAAA 57.781 33.333 0.00 0.00 37.97 2.29
471 486 5.850557 TGATTTTTCAACTCCAGCAGAAA 57.149 34.783 0.00 0.00 0.00 2.52
472 487 6.942005 TCTATGATTTTTCAACTCCAGCAGAA 59.058 34.615 0.00 0.00 0.00 3.02
473 488 6.475504 TCTATGATTTTTCAACTCCAGCAGA 58.524 36.000 0.00 0.00 0.00 4.26
474 489 6.748333 TCTATGATTTTTCAACTCCAGCAG 57.252 37.500 0.00 0.00 0.00 4.24
475 490 7.148018 GGAATCTATGATTTTTCAACTCCAGCA 60.148 37.037 0.00 0.00 0.00 4.41
476 491 7.148018 TGGAATCTATGATTTTTCAACTCCAGC 60.148 37.037 0.00 0.00 0.00 4.85
477 492 8.186821 GTGGAATCTATGATTTTTCAACTCCAG 58.813 37.037 0.00 0.00 0.00 3.86
478 493 7.122650 GGTGGAATCTATGATTTTTCAACTCCA 59.877 37.037 0.00 0.00 0.00 3.86
479 494 7.122650 TGGTGGAATCTATGATTTTTCAACTCC 59.877 37.037 0.00 0.00 0.00 3.85
480 495 7.970614 GTGGTGGAATCTATGATTTTTCAACTC 59.029 37.037 0.00 0.00 0.00 3.01
481 496 7.451255 TGTGGTGGAATCTATGATTTTTCAACT 59.549 33.333 0.00 0.00 0.00 3.16
482 497 7.601856 TGTGGTGGAATCTATGATTTTTCAAC 58.398 34.615 0.00 0.00 0.00 3.18
483 498 7.773489 TGTGGTGGAATCTATGATTTTTCAA 57.227 32.000 0.00 0.00 0.00 2.69
484 499 7.959658 ATGTGGTGGAATCTATGATTTTTCA 57.040 32.000 0.00 0.00 0.00 2.69
485 500 8.469200 TGAATGTGGTGGAATCTATGATTTTTC 58.531 33.333 0.00 0.00 0.00 2.29
486 501 8.365060 TGAATGTGGTGGAATCTATGATTTTT 57.635 30.769 0.00 0.00 0.00 1.94
496 511 5.359009 ACATCAGATTGAATGTGGTGGAATC 59.641 40.000 18.19 0.00 38.84 2.52
499 514 4.011698 CACATCAGATTGAATGTGGTGGA 58.988 43.478 18.19 0.00 38.84 4.02
519 534 7.361116 CCAAAATTGATTTGCCAAAGATACCAC 60.361 37.037 0.00 0.00 45.79 4.16
607 635 1.193874 ACGCGTTCGATTGGAGAAAAC 59.806 47.619 5.58 0.00 39.41 2.43
610 638 1.065358 GAACGCGTTCGATTGGAGAA 58.935 50.000 33.47 0.00 39.41 2.87
611 639 0.038983 TGAACGCGTTCGATTGGAGA 60.039 50.000 37.88 20.98 42.28 3.71
613 641 0.509499 GTTGAACGCGTTCGATTGGA 59.491 50.000 36.91 21.58 42.28 3.53
653 683 2.494471 TCTTCCTTTTCTATGCCGACGA 59.506 45.455 0.00 0.00 0.00 4.20
654 684 2.888594 TCTTCCTTTTCTATGCCGACG 58.111 47.619 0.00 0.00 0.00 5.12
655 685 5.819825 ATTTCTTCCTTTTCTATGCCGAC 57.180 39.130 0.00 0.00 0.00 4.79
713 743 7.196331 CGTTTCTTTCTGTCAATTTCTTTCCT 58.804 34.615 0.00 0.00 0.00 3.36
780 835 3.273788 AAGCAAGGAAGGAGCCCGG 62.274 63.158 0.00 0.00 0.00 5.73
832 887 1.901654 TTATTCGTGTGGGGACGGGG 61.902 60.000 0.00 0.00 39.88 5.73
970 1055 1.959042 ATCCCAGCAGATAAACAGCG 58.041 50.000 0.00 0.00 36.14 5.18
977 1062 5.896963 TCTCATCTAGAATCCCAGCAGATA 58.103 41.667 0.00 0.00 0.00 1.98
982 1067 3.261390 AGCATCTCATCTAGAATCCCAGC 59.739 47.826 0.00 0.00 37.89 4.85
1263 1354 3.735208 CGACTAAGATGCACAGTAGGGTG 60.735 52.174 0.00 0.00 41.72 4.61
1267 1383 4.294232 CATCCGACTAAGATGCACAGTAG 58.706 47.826 0.00 0.00 35.12 2.57
1312 1428 9.784531 TCAGAGAAGAATTATTTGAGAAACAGT 57.215 29.630 0.00 0.00 0.00 3.55
1330 1446 6.940739 TGGTCTATTTTCCTCTTCAGAGAAG 58.059 40.000 5.33 0.00 44.74 2.85
1364 1490 8.730680 GTTGCCTATATATGATTTTACACCTGG 58.269 37.037 0.00 0.00 0.00 4.45
1456 1582 3.782046 ACTTAGTCATCGATTTGACCGG 58.218 45.455 14.10 0.00 45.80 5.28
1486 1612 4.928615 TGTGAACAAAAGAAAACTGCCAAG 59.071 37.500 0.00 0.00 0.00 3.61
1538 1664 2.029290 TCGGACCAAAAGCTAGTCTGTC 60.029 50.000 12.18 5.27 37.97 3.51
1548 1674 4.036262 TGAACAATGAAGTCGGACCAAAAG 59.964 41.667 4.14 0.00 0.00 2.27
1554 1680 3.997021 AGATGTGAACAATGAAGTCGGAC 59.003 43.478 0.00 0.00 0.00 4.79
1588 1714 3.576078 TTCCATGAACACTGGAACACT 57.424 42.857 0.00 0.00 45.56 3.55
1630 1762 5.241728 GGCTTTTGTTTCAGTAGTTCTGGAT 59.758 40.000 0.00 0.00 43.76 3.41
1636 1768 5.594317 ACAGATGGCTTTTGTTTCAGTAGTT 59.406 36.000 0.00 0.00 0.00 2.24
1654 1789 7.706159 TGCTTACTGCCAAATATAAACAGATG 58.294 34.615 0.00 0.00 42.00 2.90
2081 2221 3.643554 ACCACCCTGTTACGCCCC 61.644 66.667 0.00 0.00 0.00 5.80
2094 2234 1.748122 CAGGCCTCTCATGCACCAC 60.748 63.158 0.00 0.00 0.00 4.16
2095 2235 1.276859 ATCAGGCCTCTCATGCACCA 61.277 55.000 0.00 0.00 0.00 4.17
2096 2236 0.534652 GATCAGGCCTCTCATGCACC 60.535 60.000 0.00 0.00 0.00 5.01
2107 2247 3.988976 TGCTCATATTAGGATCAGGCC 57.011 47.619 0.00 0.00 0.00 5.19
2132 2272 1.012841 CAATCTCTGCTTCGGCCTTC 58.987 55.000 0.00 0.00 40.91 3.46
2153 2293 2.924421 AGTATAGCCTTTTGCAGCCTC 58.076 47.619 0.00 0.00 44.83 4.70
2192 2332 8.928270 TCTCATAAGAACTCTTAACGAATTCC 57.072 34.615 3.39 0.00 41.27 3.01
2258 2398 4.409901 TGACAGATTTCCTCCTGCATATCA 59.590 41.667 0.00 0.00 33.90 2.15
2303 2443 2.661718 TCATCATCAATGGCTGCATGT 58.338 42.857 0.50 0.00 35.94 3.21
2345 2485 4.161565 TGACATGACCTAAGAGCCGTTATT 59.838 41.667 0.00 0.00 0.00 1.40
2673 2813 2.157738 CTTTGGGAACTTCAGCTCCAG 58.842 52.381 0.00 0.00 32.04 3.86
2819 2959 7.364144 GCCCTGGTTTTATTCAATTCATCTTCT 60.364 37.037 0.00 0.00 0.00 2.85
2834 2974 2.714250 TCCTTCAAGAGCCCTGGTTTTA 59.286 45.455 0.00 0.00 0.00 1.52
2836 2976 1.149101 TCCTTCAAGAGCCCTGGTTT 58.851 50.000 0.00 0.00 0.00 3.27
2858 2998 7.602517 AACAAGAACTTCTTCCTCGATTATG 57.397 36.000 0.67 0.00 33.78 1.90
2963 3103 2.522836 CTGACACAGCTGACAACTCT 57.477 50.000 23.35 0.00 0.00 3.24
2982 3122 2.039405 CCTTGTCTCCAGCTGCAGC 61.039 63.158 31.53 31.53 42.49 5.25
2983 3123 2.039405 GCCTTGTCTCCAGCTGCAG 61.039 63.158 10.11 10.11 0.00 4.41
2984 3124 2.033141 GCCTTGTCTCCAGCTGCA 59.967 61.111 8.66 0.00 0.00 4.41
2985 3125 1.601759 TTGCCTTGTCTCCAGCTGC 60.602 57.895 8.66 0.00 0.00 5.25
3028 3168 4.515191 TGCTGTTCTCTGTTGTACCATTTC 59.485 41.667 0.00 0.00 0.00 2.17
3076 3216 2.171840 CTGTAGGTGGCGCCTCTATAT 58.828 52.381 29.70 13.67 46.96 0.86
3090 3286 3.885297 CTGCCCAAATTATCACCTGTAGG 59.115 47.826 0.00 0.00 42.17 3.18
3202 3398 0.663568 CGTCTGAACGCTTTCCTCGT 60.664 55.000 0.00 0.00 42.82 4.18
3291 3487 1.175983 TCATTGTCCGGGCCAACAAC 61.176 55.000 20.12 5.76 38.14 3.32
3299 3495 4.513442 TGAGACTATTTTCATTGTCCGGG 58.487 43.478 0.00 0.00 36.20 5.73
3338 3534 5.240891 TGGTCTACTTCTTTTGATGAGCTG 58.759 41.667 0.00 0.00 0.00 4.24
3440 3636 2.843113 ACTTTCTGAGGGAAGGAGATGG 59.157 50.000 0.00 0.00 35.38 3.51
3488 3684 6.118170 CACTGACAACCCATCTTCATTAGAT 58.882 40.000 0.00 0.00 44.60 1.98
3505 3701 1.762370 TCTCAGCAACTTCCACTGACA 59.238 47.619 0.00 0.00 35.58 3.58
3574 3770 3.893753 TCCCAGGAACAGGATTTTCAA 57.106 42.857 0.00 0.00 37.04 2.69
3626 3825 0.911769 TTGGTGATTCGCCATCTCCT 59.088 50.000 19.23 0.00 43.92 3.69
3654 3853 1.906574 TCCAGCTAAACCAATCTCCGT 59.093 47.619 0.00 0.00 0.00 4.69
3656 3855 4.133078 CAGATCCAGCTAAACCAATCTCC 58.867 47.826 0.00 0.00 0.00 3.71
3663 3862 3.084786 AGTTTGCAGATCCAGCTAAACC 58.915 45.455 19.70 7.63 35.53 3.27
3685 3884 3.244112 ACCTTCTTCACCGAAACTACCAG 60.244 47.826 0.00 0.00 0.00 4.00
3688 3887 4.240888 GGTACCTTCTTCACCGAAACTAC 58.759 47.826 4.06 0.00 0.00 2.73
3710 3909 2.225491 TGAGGACGAATTTTTCCTTGCG 59.775 45.455 9.55 0.00 42.68 4.85
3711 3910 3.502211 TCTGAGGACGAATTTTTCCTTGC 59.498 43.478 9.55 0.85 42.68 4.01
3714 3913 4.202472 ACCTTCTGAGGACGAATTTTTCCT 60.202 41.667 8.23 8.23 46.74 3.36
3717 3916 3.253432 GCACCTTCTGAGGACGAATTTTT 59.747 43.478 0.00 0.00 46.74 1.94
3723 3922 1.919240 TTAGCACCTTCTGAGGACGA 58.081 50.000 0.00 0.00 46.74 4.20
3728 3927 5.105146 ACTGGAACTATTAGCACCTTCTGAG 60.105 44.000 7.81 0.00 0.00 3.35
3729 3928 4.777896 ACTGGAACTATTAGCACCTTCTGA 59.222 41.667 7.81 0.00 0.00 3.27
3731 3930 4.777896 TCACTGGAACTATTAGCACCTTCT 59.222 41.667 7.81 0.00 0.00 2.85
3741 3940 5.189736 TCTTACCTGCATCACTGGAACTATT 59.810 40.000 0.00 0.00 39.72 1.73
3774 3973 1.469703 TGCTTCATCCGCATGACAAAG 59.530 47.619 0.00 0.00 38.86 2.77
3776 3975 1.532523 TTGCTTCATCCGCATGACAA 58.467 45.000 0.00 0.00 38.86 3.18
3779 3978 2.754002 TGATTTTGCTTCATCCGCATGA 59.246 40.909 0.00 0.00 37.22 3.07
3801 4000 2.575532 CTTTGGCAACTCTTCACCTGA 58.424 47.619 0.00 0.00 37.61 3.86
3802 4001 1.000938 GCTTTGGCAACTCTTCACCTG 60.001 52.381 0.00 0.00 38.54 4.00
3803 4002 1.322442 GCTTTGGCAACTCTTCACCT 58.678 50.000 0.00 0.00 38.54 4.00
3864 4066 1.200839 CGACTTCGCCGTGTTTGTC 59.799 57.895 0.00 0.00 0.00 3.18
3883 4085 6.748333 TTTGAACACCTTCATCAGATGATC 57.252 37.500 14.11 8.03 39.39 2.92
4065 4267 3.548214 GGTTCTTTGTTTTCGAGCTGACC 60.548 47.826 0.00 0.00 0.00 4.02
4070 4272 4.803613 ACATTTGGTTCTTTGTTTTCGAGC 59.196 37.500 0.00 0.00 0.00 5.03
4301 4503 8.506168 TTATTACTGCCTTTGTATCTTCAAGG 57.494 34.615 0.00 0.00 0.00 3.61
4402 4604 2.428187 CCGTTGTACTGGGTGGCA 59.572 61.111 0.00 0.00 0.00 4.92
4414 4616 0.249120 TGACCTATCAGCACCCGTTG 59.751 55.000 0.00 0.00 0.00 4.10
4430 4632 6.274157 TCTCTAACCAAAGTCTGATCTGAC 57.726 41.667 21.53 21.53 37.23 3.51
4463 4665 2.092838 GCTCGAATCAGTTTCCTTCACG 59.907 50.000 0.00 0.00 0.00 4.35
4475 4677 2.796032 CGCATCAGTGTAGCTCGAATCA 60.796 50.000 0.00 0.00 0.00 2.57
4496 4698 2.817396 GCTGAAGCACTCTCCGGC 60.817 66.667 0.00 0.00 41.59 6.13
4636 4838 2.963101 TCAGAACTCTCCGTTTCCTTCA 59.037 45.455 0.00 0.00 35.56 3.02
4640 4842 6.649557 TCTTATTTTCAGAACTCTCCGTTTCC 59.350 38.462 0.00 0.00 35.56 3.13
4645 4847 7.361286 CCCTTTTCTTATTTTCAGAACTCTCCG 60.361 40.741 0.00 0.00 29.70 4.63
4697 4902 3.997064 CTCGGCAGGTTCAGGCTCG 62.997 68.421 0.00 0.00 0.00 5.03
4712 4917 4.742417 TGAGCTCTCTCAATTTCTTCTCG 58.258 43.478 16.19 0.00 45.69 4.04
4910 5115 1.226773 GGATTGCTGCATGTTCCGC 60.227 57.895 1.84 0.00 0.00 5.54
4962 5167 3.117452 GCTCCCTCATGCCCTCCAG 62.117 68.421 0.00 0.00 0.00 3.86
4968 5173 1.227497 CTTCGAGCTCCCTCATGCC 60.227 63.158 8.47 0.00 38.00 4.40
5079 5284 3.244044 TGCTTGAATTGGTTTTGGTAGCC 60.244 43.478 0.00 0.00 0.00 3.93
5132 5337 2.427232 TCGTACCGAACAGGAAGTTG 57.573 50.000 0.00 0.00 45.00 3.16
5189 5394 3.128764 CGCTGAACTGTCTCTGGTATGTA 59.871 47.826 0.00 0.00 0.00 2.29
5251 5458 4.433805 CGACAAGCGTAAAAAGCGTAAGAT 60.434 41.667 0.00 0.00 40.04 2.40
5277 5484 1.669265 GGATAAAACACAGGCTACGGC 59.331 52.381 0.00 0.00 37.82 5.68
5352 5559 1.063174 GCCAAATCTTCGCAGCTACAG 59.937 52.381 0.00 0.00 0.00 2.74
5359 5569 2.087501 TAACGAGCCAAATCTTCGCA 57.912 45.000 0.00 0.00 0.00 5.10
5369 5579 1.339631 CCACCTGGAAATAACGAGCCA 60.340 52.381 0.00 0.00 37.39 4.75
5375 5585 3.689649 CAGCACTACCACCTGGAAATAAC 59.310 47.826 0.00 0.00 38.94 1.89
5387 5597 8.318412 TCTGTAAAGAATAAATCAGCACTACCA 58.682 33.333 0.00 0.00 0.00 3.25
5423 5633 1.035932 TAGCAGGGCCACTCGACTAC 61.036 60.000 6.18 0.00 0.00 2.73
5435 5645 2.310538 GTTCCCATCCAAATAGCAGGG 58.689 52.381 0.00 0.00 37.65 4.45
5438 5648 3.010027 TCTGTGTTCCCATCCAAATAGCA 59.990 43.478 0.00 0.00 0.00 3.49
5462 5672 7.819900 GTCTATGAAAAGAGAGAAGCAAGGTAA 59.180 37.037 0.00 0.00 0.00 2.85
5474 5684 9.436957 GGTAATGTTTCTGTCTATGAAAAGAGA 57.563 33.333 0.00 0.00 35.54 3.10
5475 5685 9.219603 TGGTAATGTTTCTGTCTATGAAAAGAG 57.780 33.333 0.00 0.00 35.54 2.85
5584 5795 7.422399 TGTAATTACTCTCACAAACCAAAAGC 58.578 34.615 16.33 0.00 0.00 3.51
5591 5802 7.042051 TGCACTCTTGTAATTACTCTCACAAAC 60.042 37.037 16.33 0.65 31.00 2.93
5604 5818 5.359576 TCAACAAAACCTGCACTCTTGTAAT 59.640 36.000 0.00 0.00 30.30 1.89
5607 5821 3.088532 TCAACAAAACCTGCACTCTTGT 58.911 40.909 0.00 0.00 0.00 3.16
5614 5828 5.291178 CAGATTCATTCAACAAAACCTGCA 58.709 37.500 0.00 0.00 0.00 4.41
5619 5833 6.090358 CCAGATGCAGATTCATTCAACAAAAC 59.910 38.462 0.00 0.00 0.00 2.43
5665 5879 7.042791 CCAAACCTTATTACAGTGCAAAACAAG 60.043 37.037 0.00 0.00 0.00 3.16
5666 5880 6.758886 CCAAACCTTATTACAGTGCAAAACAA 59.241 34.615 0.00 0.00 0.00 2.83
5676 5890 6.645003 GGAAAAAGCACCAAACCTTATTACAG 59.355 38.462 0.00 0.00 0.00 2.74
5698 5912 5.543405 AGGACAACCAATGAAATGAATGGAA 59.457 36.000 0.00 0.00 38.94 3.53
5705 5919 2.354003 GGGCAGGACAACCAATGAAATG 60.354 50.000 0.00 0.00 38.94 2.32
5708 5922 0.482446 AGGGCAGGACAACCAATGAA 59.518 50.000 0.00 0.00 38.94 2.57
5716 5930 5.665812 AGTATAAATCTACAGGGCAGGACAA 59.334 40.000 0.00 0.00 0.00 3.18
5719 5933 4.593206 CCAGTATAAATCTACAGGGCAGGA 59.407 45.833 0.00 0.00 0.00 3.86
5746 5960 3.137544 AGGCCCATGAACGGAACATATAA 59.862 43.478 0.00 0.00 0.00 0.98
5747 5961 2.708861 AGGCCCATGAACGGAACATATA 59.291 45.455 0.00 0.00 0.00 0.86
5748 5962 1.494721 AGGCCCATGAACGGAACATAT 59.505 47.619 0.00 0.00 0.00 1.78
5749 5963 0.916086 AGGCCCATGAACGGAACATA 59.084 50.000 0.00 0.00 0.00 2.29
5753 5967 2.361104 GCAGGCCCATGAACGGAA 60.361 61.111 0.00 0.00 0.00 4.30
5768 5982 3.259374 TCACAACACAAAAGGAAAAGGCA 59.741 39.130 0.00 0.00 0.00 4.75
5831 6050 7.557719 AGGTGTTCTCAGTATGGAATTTAATGG 59.442 37.037 0.00 0.00 36.16 3.16
5833 6052 7.557719 CCAGGTGTTCTCAGTATGGAATTTAAT 59.442 37.037 0.00 0.00 36.16 1.40
5863 6083 1.205655 GTGCCTGTGAGCATACTGAGA 59.794 52.381 0.00 0.00 46.24 3.27
5866 6086 1.938577 GATGTGCCTGTGAGCATACTG 59.061 52.381 0.00 0.00 46.24 2.74
5867 6087 1.472201 CGATGTGCCTGTGAGCATACT 60.472 52.381 0.00 0.00 46.24 2.12
5869 6089 0.536724 ACGATGTGCCTGTGAGCATA 59.463 50.000 0.00 0.00 46.24 3.14
5870 6090 0.536724 TACGATGTGCCTGTGAGCAT 59.463 50.000 0.00 0.00 46.24 3.79
5903 6123 4.853924 AATCAACGCCAAAATCAGAGTT 57.146 36.364 0.00 0.00 0.00 3.01
5912 6132 9.495754 CAATTAAAAAGAAAAATCAACGCCAAA 57.504 25.926 0.00 0.00 0.00 3.28
5933 6153 3.572642 TCACCGCCTAGATCCTCAATTA 58.427 45.455 0.00 0.00 0.00 1.40
5934 6154 2.398588 TCACCGCCTAGATCCTCAATT 58.601 47.619 0.00 0.00 0.00 2.32
5935 6155 2.088104 TCACCGCCTAGATCCTCAAT 57.912 50.000 0.00 0.00 0.00 2.57
5949 6169 5.453567 TGAACTATACTGATGGATCACCG 57.546 43.478 0.00 0.00 39.42 4.94
5951 6171 7.173907 CCCAAATGAACTATACTGATGGATCAC 59.826 40.741 0.00 0.00 29.95 3.06
5962 6182 6.038271 CAGTAACCAGCCCAAATGAACTATAC 59.962 42.308 0.00 0.00 0.00 1.47
5963 6183 6.119536 CAGTAACCAGCCCAAATGAACTATA 58.880 40.000 0.00 0.00 0.00 1.31
5975 6195 0.404426 AAAGTCCCAGTAACCAGCCC 59.596 55.000 0.00 0.00 0.00 5.19
5976 6196 2.287977 AAAAGTCCCAGTAACCAGCC 57.712 50.000 0.00 0.00 0.00 4.85
5995 6215 5.055265 TCCCACTAACCTGATGTCAAAAA 57.945 39.130 0.00 0.00 0.00 1.94
5996 6216 4.104102 ACTCCCACTAACCTGATGTCAAAA 59.896 41.667 0.00 0.00 0.00 2.44
5997 6217 3.650942 ACTCCCACTAACCTGATGTCAAA 59.349 43.478 0.00 0.00 0.00 2.69
5998 6218 3.248024 ACTCCCACTAACCTGATGTCAA 58.752 45.455 0.00 0.00 0.00 3.18
5999 6219 2.902608 ACTCCCACTAACCTGATGTCA 58.097 47.619 0.00 0.00 0.00 3.58
6000 6220 3.983044 AACTCCCACTAACCTGATGTC 57.017 47.619 0.00 0.00 0.00 3.06
6001 6221 3.910627 AGAAACTCCCACTAACCTGATGT 59.089 43.478 0.00 0.00 0.00 3.06
6002 6222 4.559862 AGAAACTCCCACTAACCTGATG 57.440 45.455 0.00 0.00 0.00 3.07
6003 6223 6.893020 ATTAGAAACTCCCACTAACCTGAT 57.107 37.500 0.00 0.00 0.00 2.90
6004 6224 6.155737 GGTATTAGAAACTCCCACTAACCTGA 59.844 42.308 0.00 0.00 0.00 3.86
6005 6225 6.070424 TGGTATTAGAAACTCCCACTAACCTG 60.070 42.308 0.00 0.00 0.00 4.00
6006 6226 6.027482 TGGTATTAGAAACTCCCACTAACCT 58.973 40.000 0.00 0.00 0.00 3.50
6007 6227 6.303903 TGGTATTAGAAACTCCCACTAACC 57.696 41.667 0.00 0.00 0.00 2.85
6008 6228 7.280205 CACATGGTATTAGAAACTCCCACTAAC 59.720 40.741 0.00 0.00 0.00 2.34
6009 6229 7.335627 CACATGGTATTAGAAACTCCCACTAA 58.664 38.462 0.00 0.00 0.00 2.24
6010 6230 6.631766 GCACATGGTATTAGAAACTCCCACTA 60.632 42.308 0.00 0.00 0.00 2.74
6011 6231 5.745227 CACATGGTATTAGAAACTCCCACT 58.255 41.667 0.00 0.00 0.00 4.00
6012 6232 4.335594 GCACATGGTATTAGAAACTCCCAC 59.664 45.833 0.00 0.00 0.00 4.61
6013 6233 4.227300 AGCACATGGTATTAGAAACTCCCA 59.773 41.667 0.00 0.00 0.00 4.37
6014 6234 4.576463 CAGCACATGGTATTAGAAACTCCC 59.424 45.833 0.00 0.00 0.00 4.30
6015 6235 4.035675 GCAGCACATGGTATTAGAAACTCC 59.964 45.833 0.00 0.00 0.00 3.85
6016 6236 4.635765 TGCAGCACATGGTATTAGAAACTC 59.364 41.667 0.00 0.00 0.00 3.01
6017 6237 4.588899 TGCAGCACATGGTATTAGAAACT 58.411 39.130 0.00 0.00 0.00 2.66
6018 6238 4.963276 TGCAGCACATGGTATTAGAAAC 57.037 40.909 0.00 0.00 0.00 2.78
6019 6239 4.580167 GGATGCAGCACATGGTATTAGAAA 59.420 41.667 3.51 0.00 39.84 2.52
6020 6240 4.136796 GGATGCAGCACATGGTATTAGAA 58.863 43.478 3.51 0.00 39.84 2.10
6021 6241 3.392285 AGGATGCAGCACATGGTATTAGA 59.608 43.478 3.51 0.00 39.84 2.10
6022 6242 3.748083 AGGATGCAGCACATGGTATTAG 58.252 45.455 3.51 0.00 39.84 1.73
6023 6243 3.862877 AGGATGCAGCACATGGTATTA 57.137 42.857 3.51 0.00 39.84 0.98
6024 6244 2.742428 AGGATGCAGCACATGGTATT 57.258 45.000 3.51 0.00 39.84 1.89
6025 6245 2.742428 AAGGATGCAGCACATGGTAT 57.258 45.000 3.51 0.00 39.84 2.73
6026 6246 2.025981 AGAAAGGATGCAGCACATGGTA 60.026 45.455 3.51 0.00 39.84 3.25
6027 6247 1.180029 GAAAGGATGCAGCACATGGT 58.820 50.000 3.51 0.00 39.84 3.55
6028 6248 1.134367 CAGAAAGGATGCAGCACATGG 59.866 52.381 3.51 0.00 39.84 3.66
6029 6249 1.816835 ACAGAAAGGATGCAGCACATG 59.183 47.619 3.51 0.00 39.84 3.21
6030 6250 1.816835 CACAGAAAGGATGCAGCACAT 59.183 47.619 3.51 0.00 43.54 3.21
6031 6251 1.202794 TCACAGAAAGGATGCAGCACA 60.203 47.619 3.51 0.00 0.00 4.57
6032 6252 1.198637 GTCACAGAAAGGATGCAGCAC 59.801 52.381 3.51 0.00 0.00 4.40
6033 6253 1.072806 AGTCACAGAAAGGATGCAGCA 59.927 47.619 3.51 0.00 0.00 4.41
6034 6254 1.467734 CAGTCACAGAAAGGATGCAGC 59.532 52.381 0.00 0.00 0.00 5.25
6035 6255 1.467734 GCAGTCACAGAAAGGATGCAG 59.532 52.381 0.00 0.00 32.58 4.41
6036 6256 1.527034 GCAGTCACAGAAAGGATGCA 58.473 50.000 0.00 0.00 32.58 3.96
6037 6257 0.807496 GGCAGTCACAGAAAGGATGC 59.193 55.000 0.00 0.00 0.00 3.91
6038 6258 2.189594 TGGCAGTCACAGAAAGGATG 57.810 50.000 0.00 0.00 0.00 3.51
6039 6259 2.508526 GTTGGCAGTCACAGAAAGGAT 58.491 47.619 0.00 0.00 0.00 3.24
6040 6260 1.476833 GGTTGGCAGTCACAGAAAGGA 60.477 52.381 0.00 0.00 0.00 3.36
6041 6261 0.954452 GGTTGGCAGTCACAGAAAGG 59.046 55.000 0.00 0.00 0.00 3.11
6042 6262 1.605710 CAGGTTGGCAGTCACAGAAAG 59.394 52.381 0.00 0.00 0.00 2.62
6043 6263 1.679139 CAGGTTGGCAGTCACAGAAA 58.321 50.000 0.00 0.00 0.00 2.52
6044 6264 0.179020 CCAGGTTGGCAGTCACAGAA 60.179 55.000 0.00 0.00 0.00 3.02
6045 6265 1.451504 CCAGGTTGGCAGTCACAGA 59.548 57.895 0.00 0.00 0.00 3.41
6046 6266 4.069869 CCAGGTTGGCAGTCACAG 57.930 61.111 0.00 0.00 0.00 3.66
6060 6280 4.473520 AGAATCGCACGGGGCCAG 62.474 66.667 4.39 3.10 40.31 4.85
6061 6281 4.776322 CAGAATCGCACGGGGCCA 62.776 66.667 4.39 0.00 40.31 5.36
6062 6282 4.778143 ACAGAATCGCACGGGGCC 62.778 66.667 0.00 0.00 40.31 5.80
6063 6283 3.499737 CACAGAATCGCACGGGGC 61.500 66.667 0.00 0.00 39.90 5.80
6064 6284 2.047274 ACACAGAATCGCACGGGG 60.047 61.111 0.00 0.00 0.00 5.73
6065 6285 1.374125 TCACACAGAATCGCACGGG 60.374 57.895 0.00 0.00 0.00 5.28
6066 6286 0.943835 TGTCACACAGAATCGCACGG 60.944 55.000 0.00 0.00 0.00 4.94
6067 6287 0.858583 TTGTCACACAGAATCGCACG 59.141 50.000 0.00 0.00 0.00 5.34
6068 6288 1.195448 CCTTGTCACACAGAATCGCAC 59.805 52.381 0.00 0.00 0.00 5.34
6069 6289 1.511850 CCTTGTCACACAGAATCGCA 58.488 50.000 0.00 0.00 0.00 5.10
6070 6290 0.166814 GCCTTGTCACACAGAATCGC 59.833 55.000 0.00 0.00 0.00 4.58
6071 6291 1.511850 TGCCTTGTCACACAGAATCG 58.488 50.000 0.00 0.00 0.00 3.34
6072 6292 4.437930 GCTTATGCCTTGTCACACAGAATC 60.438 45.833 0.00 0.00 0.00 2.52
6073 6293 3.441572 GCTTATGCCTTGTCACACAGAAT 59.558 43.478 0.00 0.00 0.00 2.40
6074 6294 2.813754 GCTTATGCCTTGTCACACAGAA 59.186 45.455 0.00 0.00 0.00 3.02
6075 6295 2.426522 GCTTATGCCTTGTCACACAGA 58.573 47.619 0.00 0.00 0.00 3.41
6076 6296 2.907910 GCTTATGCCTTGTCACACAG 57.092 50.000 0.00 0.00 0.00 3.66
6088 6308 2.223433 GCTCTGTGTGATTGGCTTATGC 60.223 50.000 0.00 0.00 38.76 3.14
6089 6309 3.064958 CAGCTCTGTGTGATTGGCTTATG 59.935 47.826 0.00 0.00 0.00 1.90
6090 6310 3.276857 CAGCTCTGTGTGATTGGCTTAT 58.723 45.455 0.00 0.00 0.00 1.73
6091 6311 2.703416 CAGCTCTGTGTGATTGGCTTA 58.297 47.619 0.00 0.00 0.00 3.09
6092 6312 1.531423 CAGCTCTGTGTGATTGGCTT 58.469 50.000 0.00 0.00 0.00 4.35
6093 6313 0.959372 GCAGCTCTGTGTGATTGGCT 60.959 55.000 0.00 0.00 0.00 4.75
6094 6314 1.505353 GCAGCTCTGTGTGATTGGC 59.495 57.895 0.00 0.00 0.00 4.52
6095 6315 1.792301 CGCAGCTCTGTGTGATTGG 59.208 57.895 2.46 0.00 36.41 3.16
6102 6322 3.476646 CTCGCACGCAGCTCTGTG 61.477 66.667 9.92 9.92 45.86 3.66
6103 6323 3.983494 ACTCGCACGCAGCTCTGT 61.983 61.111 0.00 0.00 42.61 3.41
6104 6324 3.476646 CACTCGCACGCAGCTCTG 61.477 66.667 0.00 0.00 42.61 3.35
6105 6325 4.731612 CCACTCGCACGCAGCTCT 62.732 66.667 0.00 0.00 42.61 4.09
6121 6341 3.219198 CGCTAATTGGGGCAGCCC 61.219 66.667 24.23 24.23 44.51 5.19
6122 6342 3.904479 GCGCTAATTGGGGCAGCC 61.904 66.667 23.17 1.26 43.28 4.85
6126 6346 2.440247 ACCTGCGCTAATTGGGGC 60.440 61.111 21.69 21.69 43.92 5.80
6127 6347 1.823899 GGACCTGCGCTAATTGGGG 60.824 63.158 9.73 1.16 0.00 4.96
6128 6348 0.394352 AAGGACCTGCGCTAATTGGG 60.394 55.000 9.73 3.83 0.00 4.12
6129 6349 1.401905 GAAAGGACCTGCGCTAATTGG 59.598 52.381 9.73 5.70 0.00 3.16
6130 6350 2.096496 CAGAAAGGACCTGCGCTAATTG 59.904 50.000 9.73 0.00 0.00 2.32
6131 6351 2.359900 CAGAAAGGACCTGCGCTAATT 58.640 47.619 9.73 0.00 0.00 1.40
6132 6352 1.407437 CCAGAAAGGACCTGCGCTAAT 60.407 52.381 9.73 0.00 41.22 1.73
6133 6353 0.036388 CCAGAAAGGACCTGCGCTAA 60.036 55.000 9.73 0.00 41.22 3.09
6134 6354 1.192146 ACCAGAAAGGACCTGCGCTA 61.192 55.000 9.73 0.00 41.22 4.26
6135 6355 2.056906 AACCAGAAAGGACCTGCGCT 62.057 55.000 9.73 0.00 41.22 5.92
6136 6356 1.172812 AAACCAGAAAGGACCTGCGC 61.173 55.000 0.00 0.00 41.22 6.09
6137 6357 1.318576 AAAACCAGAAAGGACCTGCG 58.681 50.000 0.00 0.00 41.22 5.18
6138 6358 2.820197 CCTAAAACCAGAAAGGACCTGC 59.180 50.000 0.00 0.00 41.22 4.85
6139 6359 4.367039 TCCTAAAACCAGAAAGGACCTG 57.633 45.455 0.00 0.00 41.22 4.00
6140 6360 4.202577 CCTTCCTAAAACCAGAAAGGACCT 60.203 45.833 0.00 0.00 41.22 3.85
6141 6361 4.079970 CCTTCCTAAAACCAGAAAGGACC 58.920 47.826 0.00 0.00 41.22 4.46
6142 6362 3.506455 GCCTTCCTAAAACCAGAAAGGAC 59.494 47.826 3.23 0.00 41.22 3.85
6143 6363 3.763057 GCCTTCCTAAAACCAGAAAGGA 58.237 45.455 3.23 0.00 41.22 3.36
6144 6364 2.488153 CGCCTTCCTAAAACCAGAAAGG 59.512 50.000 0.00 0.00 45.67 3.11
6145 6365 3.146847 ACGCCTTCCTAAAACCAGAAAG 58.853 45.455 0.00 0.00 0.00 2.62
6146 6366 3.217681 ACGCCTTCCTAAAACCAGAAA 57.782 42.857 0.00 0.00 0.00 2.52
6147 6367 2.943036 ACGCCTTCCTAAAACCAGAA 57.057 45.000 0.00 0.00 0.00 3.02
6148 6368 4.563140 AATACGCCTTCCTAAAACCAGA 57.437 40.909 0.00 0.00 0.00 3.86
6149 6369 5.638596 AAAATACGCCTTCCTAAAACCAG 57.361 39.130 0.00 0.00 0.00 4.00
6171 6391 3.581265 ACGAACCTTCCACCCTAAAAA 57.419 42.857 0.00 0.00 0.00 1.94
6172 6392 4.914177 ATACGAACCTTCCACCCTAAAA 57.086 40.909 0.00 0.00 0.00 1.52
6173 6393 4.914177 AATACGAACCTTCCACCCTAAA 57.086 40.909 0.00 0.00 0.00 1.85
6174 6394 4.914177 AAATACGAACCTTCCACCCTAA 57.086 40.909 0.00 0.00 0.00 2.69
6175 6395 7.860649 ATATAAATACGAACCTTCCACCCTA 57.139 36.000 0.00 0.00 0.00 3.53
6176 6396 6.758806 ATATAAATACGAACCTTCCACCCT 57.241 37.500 0.00 0.00 0.00 4.34
6177 6397 7.812690 AAATATAAATACGAACCTTCCACCC 57.187 36.000 0.00 0.00 0.00 4.61
6232 6452 7.501225 AGAAGAGATAAAAACGGACAGGAAAAA 59.499 33.333 0.00 0.00 0.00 1.94
6233 6453 6.996282 AGAAGAGATAAAAACGGACAGGAAAA 59.004 34.615 0.00 0.00 0.00 2.29
6234 6454 6.531021 AGAAGAGATAAAAACGGACAGGAAA 58.469 36.000 0.00 0.00 0.00 3.13
6235 6455 6.110411 AGAAGAGATAAAAACGGACAGGAA 57.890 37.500 0.00 0.00 0.00 3.36
6236 6456 5.740290 AGAAGAGATAAAAACGGACAGGA 57.260 39.130 0.00 0.00 0.00 3.86
6237 6457 6.803154 AAAGAAGAGATAAAAACGGACAGG 57.197 37.500 0.00 0.00 0.00 4.00
6238 6458 8.989980 AGTTAAAGAAGAGATAAAAACGGACAG 58.010 33.333 0.00 0.00 0.00 3.51
6239 6459 8.897872 AGTTAAAGAAGAGATAAAAACGGACA 57.102 30.769 0.00 0.00 0.00 4.02
6308 6528 9.626045 GGAACATAAAACATGAAAGTCCTTTAG 57.374 33.333 0.00 0.00 32.11 1.85
6309 6529 9.137459 TGGAACATAAAACATGAAAGTCCTTTA 57.863 29.630 0.00 0.00 32.11 1.85
6310 6530 8.017418 TGGAACATAAAACATGAAAGTCCTTT 57.983 30.769 0.00 0.00 35.14 3.11
6311 6531 7.595819 TGGAACATAAAACATGAAAGTCCTT 57.404 32.000 0.00 0.00 0.00 3.36
6312 6532 7.595819 TTGGAACATAAAACATGAAAGTCCT 57.404 32.000 0.00 0.00 39.30 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.