Multiple sequence alignment - TraesCS2B01G095300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G095300 chr2B 100.000 3601 0 0 1 3601 55410600 55414200 0.000000e+00 6650.0
1 TraesCS2B01G095300 chr2B 96.127 568 21 1 2852 3418 242173186 242173753 0.000000e+00 926.0
2 TraesCS2B01G095300 chr2B 96.562 320 9 2 1 318 752992693 752993012 2.460000e-146 529.0
3 TraesCS2B01G095300 chr4A 95.009 3246 146 11 365 3601 713186337 713189575 0.000000e+00 5083.0
4 TraesCS2B01G095300 chr4A 93.725 2964 134 22 672 3601 690206557 690209502 0.000000e+00 4396.0
5 TraesCS2B01G095300 chr4A 93.840 487 23 5 365 850 564350066 564349586 0.000000e+00 726.0
6 TraesCS2B01G095300 chr4A 93.243 74 3 2 296 368 479041021 479040949 1.370000e-19 108.0
7 TraesCS2B01G095300 chr3B 92.156 1466 99 10 365 1826 624661762 624660309 0.000000e+00 2056.0
8 TraesCS2B01G095300 chr3B 96.309 569 20 1 3033 3601 624660206 624659639 0.000000e+00 933.0
9 TraesCS2B01G095300 chr3B 88.889 207 22 1 2851 3056 10190733 10190939 1.660000e-63 254.0
10 TraesCS2B01G095300 chr3B 91.071 112 9 1 2326 2437 189150274 189150384 2.240000e-32 150.0
11 TraesCS2B01G095300 chr3B 87.500 120 14 1 2321 2440 760989256 760989138 1.740000e-28 137.0
12 TraesCS2B01G095300 chr7B 88.587 1069 93 13 878 1932 3896359 3895306 0.000000e+00 1271.0
13 TraesCS2B01G095300 chr7B 89.524 420 33 5 2434 2846 3894917 3894502 4.120000e-144 521.0
14 TraesCS2B01G095300 chr7B 89.381 113 11 1 2326 2438 594984951 594985062 1.350000e-29 141.0
15 TraesCS2B01G095300 chr7D 87.088 1092 113 20 856 1932 63485418 63484340 0.000000e+00 1210.0
16 TraesCS2B01G095300 chr7D 85.612 417 41 10 2434 2846 63483964 63483563 1.550000e-113 420.0
17 TraesCS2B01G095300 chr7D 91.166 283 23 2 3203 3485 41330692 41330972 2.030000e-102 383.0
18 TraesCS2B01G095300 chr7D 90.244 205 19 1 2845 3048 41330490 41330694 2.130000e-67 267.0
19 TraesCS2B01G095300 chr7D 81.731 312 29 16 2009 2306 63484303 63484006 6.010000e-58 235.0
20 TraesCS2B01G095300 chr7D 93.333 75 1 4 296 368 231998345 231998417 1.370000e-19 108.0
21 TraesCS2B01G095300 chr6B 95.497 755 30 4 2851 3601 12832814 12832060 0.000000e+00 1203.0
22 TraesCS2B01G095300 chr6B 98.680 303 4 0 1 303 316581725 316582027 4.090000e-149 538.0
23 TraesCS2B01G095300 chr6A 95.491 754 31 3 2851 3601 281226895 281227648 0.000000e+00 1201.0
24 TraesCS2B01G095300 chr6A 94.297 754 39 4 2851 3601 58466410 58465658 0.000000e+00 1151.0
25 TraesCS2B01G095300 chr6A 93.958 480 23 5 365 843 491423664 491424138 0.000000e+00 721.0
26 TraesCS2B01G095300 chr7A 95.364 755 30 5 2851 3601 16088235 16088988 0.000000e+00 1195.0
27 TraesCS2B01G095300 chr7A 95.232 755 31 5 2851 3601 16107519 16108272 0.000000e+00 1190.0
28 TraesCS2B01G095300 chr7A 94.967 755 33 5 2851 3601 81681685 81680932 0.000000e+00 1179.0
29 TraesCS2B01G095300 chr7A 94.548 752 37 4 2854 3601 221165645 221164894 0.000000e+00 1158.0
30 TraesCS2B01G095300 chr7A 85.805 1106 113 23 858 1932 66284638 66283546 0.000000e+00 1133.0
31 TraesCS2B01G095300 chr7A 92.540 496 30 4 365 859 693950715 693950226 0.000000e+00 704.0
32 TraesCS2B01G095300 chr7A 81.818 275 27 11 2009 2271 66283493 66283230 3.640000e-50 209.0
33 TraesCS2B01G095300 chr7A 94.444 72 2 2 297 368 157470053 157469984 3.800000e-20 110.0
34 TraesCS2B01G095300 chr3A 94.834 755 34 5 2851 3601 744951379 744952132 0.000000e+00 1173.0
35 TraesCS2B01G095300 chr3A 94.702 755 36 4 2851 3601 745024306 745025060 0.000000e+00 1170.0
36 TraesCS2B01G095300 chr2A 94.570 755 37 4 2851 3601 15135119 15135873 0.000000e+00 1164.0
37 TraesCS2B01G095300 chr2A 93.196 485 27 4 368 851 72604935 72604456 0.000000e+00 708.0
38 TraesCS2B01G095300 chr4B 94.437 755 37 5 2851 3601 102827492 102828245 0.000000e+00 1157.0
39 TraesCS2B01G095300 chr4B 94.016 752 35 7 2854 3601 440773334 440774079 0.000000e+00 1131.0
40 TraesCS2B01G095300 chr4B 93.402 485 28 4 376 859 102790958 102791439 0.000000e+00 715.0
41 TraesCS2B01G095300 chr4B 98.684 304 4 0 1 304 116360125 116360428 1.140000e-149 540.0
42 TraesCS2B01G095300 chr4B 98.680 303 4 0 1 303 558930480 558930178 4.090000e-149 538.0
43 TraesCS2B01G095300 chr4B 85.977 435 43 7 3066 3485 222965232 222965663 1.970000e-122 449.0
44 TraesCS2B01G095300 chr4B 88.889 234 25 1 3065 3297 560022297 560022064 1.640000e-73 287.0
45 TraesCS2B01G095300 chr4B 91.892 111 8 1 2330 2440 586581492 586581383 1.730000e-33 154.0
46 TraesCS2B01G095300 chr4B 90.179 112 10 1 2326 2437 654206347 654206457 1.040000e-30 145.0
47 TraesCS2B01G095300 chr4B 84.348 115 17 1 2327 2441 81899491 81899378 1.060000e-20 111.0
48 TraesCS2B01G095300 chr5A 93.548 496 25 4 365 859 149797186 149796697 0.000000e+00 732.0
49 TraesCS2B01G095300 chr1A 93.075 491 24 5 365 850 175510092 175510577 0.000000e+00 710.0
50 TraesCS2B01G095300 chr1A 89.744 156 5 3 3323 3477 575363249 575363394 4.750000e-44 189.0
51 TraesCS2B01G095300 chr1A 84.956 113 14 3 2326 2437 485342841 485342951 1.060000e-20 111.0
52 TraesCS2B01G095300 chr1B 98.684 304 4 0 1 304 660117230 660116927 1.140000e-149 540.0
53 TraesCS2B01G095300 chr1B 94.531 256 13 1 3347 3601 88557039 88556784 9.370000e-106 394.0
54 TraesCS2B01G095300 chr1B 90.000 110 10 1 2328 2437 661654530 661654422 1.350000e-29 141.0
55 TraesCS2B01G095300 chr1B 89.286 112 10 2 2326 2437 645542250 645542359 4.850000e-29 139.0
56 TraesCS2B01G095300 chrUn 98.680 303 4 0 1 303 213737676 213737374 4.090000e-149 538.0
57 TraesCS2B01G095300 chrUn 98.680 303 4 0 1 303 215364713 215364411 4.090000e-149 538.0
58 TraesCS2B01G095300 chrUn 91.262 103 9 0 3071 3173 16404366 16404264 1.350000e-29 141.0
59 TraesCS2B01G095300 chrUn 83.851 161 13 7 3323 3481 202812356 202812207 1.350000e-29 141.0
60 TraesCS2B01G095300 chrUn 91.262 103 9 0 3071 3173 203152784 203152886 1.350000e-29 141.0
61 TraesCS2B01G095300 chrUn 83.851 161 13 7 3323 3481 241051938 241051789 1.350000e-29 141.0
62 TraesCS2B01G095300 chrUn 89.041 73 6 2 3323 3394 101501352 101501423 4.950000e-14 89.8
63 TraesCS2B01G095300 chrUn 95.745 47 2 0 3417 3463 230765248 230765294 3.860000e-10 76.8
64 TraesCS2B01G095300 chrUn 95.745 47 2 0 3417 3463 294273603 294273649 3.860000e-10 76.8
65 TraesCS2B01G095300 chrUn 95.745 47 2 0 3417 3463 365316283 365316329 3.860000e-10 76.8
66 TraesCS2B01G095300 chrUn 95.745 47 2 0 3417 3463 365358241 365358287 3.860000e-10 76.8
67 TraesCS2B01G095300 chr5B 98.680 303 4 0 1 303 466744337 466744035 4.090000e-149 538.0
68 TraesCS2B01G095300 chr5B 98.680 303 4 0 1 303 708166990 708167292 4.090000e-149 538.0
69 TraesCS2B01G095300 chr5B 87.611 113 11 3 2326 2437 680947358 680947468 1.050000e-25 128.0
70 TraesCS2B01G095300 chr1D 87.844 436 35 8 3065 3485 417760015 417760447 2.500000e-136 496.0
71 TraesCS2B01G095300 chr1D 88.293 205 23 1 2853 3056 417759701 417759905 9.990000e-61 244.0
72 TraesCS2B01G095300 chr1D 89.172 157 5 4 3323 3477 479049718 479049864 6.140000e-43 185.0
73 TraesCS2B01G095300 chr1D 86.525 141 10 4 3324 3463 10226541 10226673 2.900000e-31 147.0
74 TraesCS2B01G095300 chr1D 84.426 122 14 4 3485 3601 417760522 417760643 8.170000e-22 115.0
75 TraesCS2B01G095300 chr1D 78.571 112 21 3 2329 2439 95869810 95869701 1.790000e-08 71.3
76 TraesCS2B01G095300 chr6D 86.927 436 40 6 3065 3485 55222 54789 1.170000e-129 473.0
77 TraesCS2B01G095300 chr6D 88.034 117 13 1 2322 2438 11565350 11565465 1.740000e-28 137.0
78 TraesCS2B01G095300 chr6D 89.091 110 11 1 2329 2438 418888288 418888180 6.270000e-28 135.0
79 TraesCS2B01G095300 chr6D 86.777 121 13 3 3484 3601 54715 54595 8.110000e-27 132.0
80 TraesCS2B01G095300 chr6D 98.462 65 0 1 304 368 101673105 101673042 2.940000e-21 113.0
81 TraesCS2B01G095300 chr6D 98.462 65 0 1 304 368 130437957 130438020 2.940000e-21 113.0
82 TraesCS2B01G095300 chr6D 98.462 65 0 1 304 368 133136836 133136773 2.940000e-21 113.0
83 TraesCS2B01G095300 chr6D 83.761 117 17 2 2321 2437 271605385 271605271 3.800000e-20 110.0
84 TraesCS2B01G095300 chr6D 92.208 77 5 1 3323 3398 5489332 5489256 1.370000e-19 108.0
85 TraesCS2B01G095300 chr2D 86.927 436 40 4 3065 3485 613466280 613466713 1.170000e-129 473.0
86 TraesCS2B01G095300 chr2D 88.406 207 23 1 2851 3056 613465964 613466170 7.720000e-62 248.0
87 TraesCS2B01G095300 chr2D 93.103 116 7 1 2323 2438 617397744 617397858 6.180000e-38 169.0
88 TraesCS2B01G095300 chr2D 87.603 121 12 3 3484 3601 613466788 613466908 1.740000e-28 137.0
89 TraesCS2B01G095300 chr2D 94.521 73 2 2 296 368 541960927 541960857 1.060000e-20 111.0
90 TraesCS2B01G095300 chr2D 94.444 72 1 3 297 368 207764965 207764897 1.370000e-19 108.0
91 TraesCS2B01G095300 chr5D 86.468 436 42 4 3065 3485 52596922 52597355 2.530000e-126 462.0
92 TraesCS2B01G095300 chr5D 87.383 214 26 1 2851 3063 52596606 52596819 9.990000e-61 244.0
93 TraesCS2B01G095300 chr5D 92.661 109 7 1 2329 2437 350480927 350481034 4.810000e-34 156.0
94 TraesCS2B01G095300 chr5D 86.400 125 11 5 3483 3601 52597426 52597550 8.110000e-27 132.0
95 TraesCS2B01G095300 chr5D 86.486 111 12 3 2329 2438 287300035 287299927 6.320000e-23 119.0
96 TraesCS2B01G095300 chr5D 94.595 74 1 3 296 368 93678834 93678763 1.060000e-20 111.0
97 TraesCS2B01G095300 chr3D 89.091 165 12 4 3323 3485 553176927 553177087 2.190000e-47 200.0
98 TraesCS2B01G095300 chr4D 81.481 108 17 3 2328 2434 315264826 315264721 6.410000e-13 86.1
99 TraesCS2B01G095300 chr4D 81.081 111 16 5 2329 2437 304890508 304890615 2.300000e-12 84.2
100 TraesCS2B01G095300 chr4D 79.825 114 20 3 2328 2440 457573035 457572924 2.980000e-11 80.5
101 TraesCS2B01G095300 chr4D 97.368 38 1 0 3071 3108 444096535 444096572 8.350000e-07 65.8
102 TraesCS2B01G095300 chr4D 90.196 51 4 1 2326 2376 464848596 464848645 8.350000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G095300 chr2B 55410600 55414200 3600 False 6650.000000 6650 100.000000 1 3601 1 chr2B.!!$F1 3600
1 TraesCS2B01G095300 chr2B 242173186 242173753 567 False 926.000000 926 96.127000 2852 3418 1 chr2B.!!$F2 566
2 TraesCS2B01G095300 chr4A 713186337 713189575 3238 False 5083.000000 5083 95.009000 365 3601 1 chr4A.!!$F2 3236
3 TraesCS2B01G095300 chr4A 690206557 690209502 2945 False 4396.000000 4396 93.725000 672 3601 1 chr4A.!!$F1 2929
4 TraesCS2B01G095300 chr3B 624659639 624661762 2123 True 1494.500000 2056 94.232500 365 3601 2 chr3B.!!$R2 3236
5 TraesCS2B01G095300 chr7B 3894502 3896359 1857 True 896.000000 1271 89.055500 878 2846 2 chr7B.!!$R1 1968
6 TraesCS2B01G095300 chr7D 63483563 63485418 1855 True 621.666667 1210 84.810333 856 2846 3 chr7D.!!$R1 1990
7 TraesCS2B01G095300 chr6B 12832060 12832814 754 True 1203.000000 1203 95.497000 2851 3601 1 chr6B.!!$R1 750
8 TraesCS2B01G095300 chr6A 281226895 281227648 753 False 1201.000000 1201 95.491000 2851 3601 1 chr6A.!!$F1 750
9 TraesCS2B01G095300 chr6A 58465658 58466410 752 True 1151.000000 1151 94.297000 2851 3601 1 chr6A.!!$R1 750
10 TraesCS2B01G095300 chr7A 16088235 16088988 753 False 1195.000000 1195 95.364000 2851 3601 1 chr7A.!!$F1 750
11 TraesCS2B01G095300 chr7A 16107519 16108272 753 False 1190.000000 1190 95.232000 2851 3601 1 chr7A.!!$F2 750
12 TraesCS2B01G095300 chr7A 81680932 81681685 753 True 1179.000000 1179 94.967000 2851 3601 1 chr7A.!!$R1 750
13 TraesCS2B01G095300 chr7A 221164894 221165645 751 True 1158.000000 1158 94.548000 2854 3601 1 chr7A.!!$R3 747
14 TraesCS2B01G095300 chr7A 66283230 66284638 1408 True 671.000000 1133 83.811500 858 2271 2 chr7A.!!$R5 1413
15 TraesCS2B01G095300 chr3A 744951379 744952132 753 False 1173.000000 1173 94.834000 2851 3601 1 chr3A.!!$F1 750
16 TraesCS2B01G095300 chr3A 745024306 745025060 754 False 1170.000000 1170 94.702000 2851 3601 1 chr3A.!!$F2 750
17 TraesCS2B01G095300 chr2A 15135119 15135873 754 False 1164.000000 1164 94.570000 2851 3601 1 chr2A.!!$F1 750
18 TraesCS2B01G095300 chr4B 102827492 102828245 753 False 1157.000000 1157 94.437000 2851 3601 1 chr4B.!!$F2 750
19 TraesCS2B01G095300 chr4B 440773334 440774079 745 False 1131.000000 1131 94.016000 2854 3601 1 chr4B.!!$F5 747
20 TraesCS2B01G095300 chr1D 417759701 417760643 942 False 285.000000 496 86.854333 2853 3601 3 chr1D.!!$F3 748
21 TraesCS2B01G095300 chr6D 54595 55222 627 True 302.500000 473 86.852000 3065 3601 2 chr6D.!!$R6 536
22 TraesCS2B01G095300 chr2D 613465964 613466908 944 False 286.000000 473 87.645333 2851 3601 3 chr2D.!!$F2 750
23 TraesCS2B01G095300 chr5D 52596606 52597550 944 False 279.333333 462 86.750333 2851 3601 3 chr5D.!!$F2 750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 943 0.035881 CACAGAGCAAGCAGGAAGGA 59.964 55.000 0.0 0.0 0.00 3.36 F
1032 1045 1.116308 TGGTGTTCGACAAGAGGACA 58.884 50.000 0.0 0.0 0.00 4.02 F
1158 1177 1.450312 GCCGCTGTTCCTAGTGCAT 60.450 57.895 0.0 0.0 0.00 3.96 F
1424 1467 1.531365 CTCAACCCCTTTGCCTGCA 60.531 57.895 0.0 0.0 34.88 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2122 2209 0.036010 CTGACCGAATGGACCAGCTT 60.036 55.000 0.0 0.0 39.21 3.74 R
2202 2294 0.040058 TACGGGGAAGCTACTGACCA 59.960 55.000 0.0 0.0 0.00 4.02 R
2514 2625 0.764369 TCCACTCTCAACACCAGCCT 60.764 55.000 0.0 0.0 0.00 4.58 R
3316 3530 3.376546 GGCATCAGGACAGAAAAGATGTC 59.623 47.826 0.0 0.0 45.12 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.227238 GACACATAGGCAAAACTGATGAG 57.773 43.478 0.00 0.00 0.00 2.90
23 24 4.012374 ACACATAGGCAAAACTGATGAGG 58.988 43.478 0.00 0.00 0.00 3.86
24 25 4.012374 CACATAGGCAAAACTGATGAGGT 58.988 43.478 0.00 0.00 0.00 3.85
25 26 4.012374 ACATAGGCAAAACTGATGAGGTG 58.988 43.478 0.00 0.00 0.00 4.00
26 27 1.915141 AGGCAAAACTGATGAGGTGG 58.085 50.000 0.00 0.00 0.00 4.61
27 28 0.244721 GGCAAAACTGATGAGGTGGC 59.755 55.000 0.00 0.00 0.00 5.01
28 29 0.109597 GCAAAACTGATGAGGTGGCG 60.110 55.000 0.00 0.00 0.00 5.69
29 30 0.109597 CAAAACTGATGAGGTGGCGC 60.110 55.000 0.00 0.00 0.00 6.53
30 31 1.244019 AAAACTGATGAGGTGGCGCC 61.244 55.000 22.73 22.73 37.58 6.53
40 41 3.212450 GGTGGCGCCTAGTAATAGC 57.788 57.895 29.70 11.35 0.00 2.97
41 42 0.391597 GGTGGCGCCTAGTAATAGCA 59.608 55.000 29.70 0.00 0.00 3.49
42 43 1.202604 GGTGGCGCCTAGTAATAGCAA 60.203 52.381 29.70 0.00 0.00 3.91
43 44 1.865340 GTGGCGCCTAGTAATAGCAAC 59.135 52.381 29.70 8.82 0.00 4.17
44 45 1.202604 TGGCGCCTAGTAATAGCAACC 60.203 52.381 29.70 0.00 0.00 3.77
45 46 1.509703 GCGCCTAGTAATAGCAACCC 58.490 55.000 0.00 0.00 0.00 4.11
46 47 1.202604 GCGCCTAGTAATAGCAACCCA 60.203 52.381 0.00 0.00 0.00 4.51
47 48 2.480845 CGCCTAGTAATAGCAACCCAC 58.519 52.381 0.00 0.00 0.00 4.61
48 49 2.805657 CGCCTAGTAATAGCAACCCACC 60.806 54.545 0.00 0.00 0.00 4.61
49 50 2.171870 GCCTAGTAATAGCAACCCACCA 59.828 50.000 0.00 0.00 0.00 4.17
50 51 3.805207 CCTAGTAATAGCAACCCACCAC 58.195 50.000 0.00 0.00 0.00 4.16
51 52 3.199071 CCTAGTAATAGCAACCCACCACA 59.801 47.826 0.00 0.00 0.00 4.17
52 53 3.799432 AGTAATAGCAACCCACCACAA 57.201 42.857 0.00 0.00 0.00 3.33
53 54 4.316025 AGTAATAGCAACCCACCACAAT 57.684 40.909 0.00 0.00 0.00 2.71
54 55 4.672899 AGTAATAGCAACCCACCACAATT 58.327 39.130 0.00 0.00 0.00 2.32
55 56 5.083821 AGTAATAGCAACCCACCACAATTT 58.916 37.500 0.00 0.00 0.00 1.82
56 57 6.249951 AGTAATAGCAACCCACCACAATTTA 58.750 36.000 0.00 0.00 0.00 1.40
57 58 5.400066 AATAGCAACCCACCACAATTTAC 57.600 39.130 0.00 0.00 0.00 2.01
58 59 2.672098 AGCAACCCACCACAATTTACA 58.328 42.857 0.00 0.00 0.00 2.41
59 60 3.034635 AGCAACCCACCACAATTTACAA 58.965 40.909 0.00 0.00 0.00 2.41
60 61 3.069443 AGCAACCCACCACAATTTACAAG 59.931 43.478 0.00 0.00 0.00 3.16
61 62 3.801983 GCAACCCACCACAATTTACAAGG 60.802 47.826 0.00 0.00 0.00 3.61
62 63 1.967779 ACCCACCACAATTTACAAGGC 59.032 47.619 0.00 0.00 0.00 4.35
63 64 2.247358 CCCACCACAATTTACAAGGCT 58.753 47.619 0.00 0.00 0.00 4.58
64 65 3.181427 ACCCACCACAATTTACAAGGCTA 60.181 43.478 0.00 0.00 0.00 3.93
65 66 4.023291 CCCACCACAATTTACAAGGCTAT 58.977 43.478 0.00 0.00 0.00 2.97
66 67 4.142182 CCCACCACAATTTACAAGGCTATG 60.142 45.833 0.00 0.00 0.00 2.23
67 68 4.704540 CCACCACAATTTACAAGGCTATGA 59.295 41.667 0.00 0.00 0.00 2.15
68 69 5.393027 CCACCACAATTTACAAGGCTATGAC 60.393 44.000 0.00 0.00 0.00 3.06
69 70 4.705023 ACCACAATTTACAAGGCTATGACC 59.295 41.667 0.00 0.00 0.00 4.02
70 71 4.704540 CCACAATTTACAAGGCTATGACCA 59.295 41.667 0.00 0.00 0.00 4.02
71 72 5.360714 CCACAATTTACAAGGCTATGACCAT 59.639 40.000 0.00 0.00 0.00 3.55
72 73 6.460123 CCACAATTTACAAGGCTATGACCATC 60.460 42.308 0.00 0.00 0.00 3.51
73 74 6.319658 CACAATTTACAAGGCTATGACCATCT 59.680 38.462 0.00 0.00 0.00 2.90
74 75 7.498900 CACAATTTACAAGGCTATGACCATCTA 59.501 37.037 0.00 0.00 0.00 1.98
75 76 8.220559 ACAATTTACAAGGCTATGACCATCTAT 58.779 33.333 0.00 0.00 0.00 1.98
76 77 9.725019 CAATTTACAAGGCTATGACCATCTATA 57.275 33.333 0.00 0.00 0.00 1.31
79 80 9.725019 TTTACAAGGCTATGACCATCTATATTG 57.275 33.333 0.00 0.00 0.00 1.90
80 81 6.715280 ACAAGGCTATGACCATCTATATTGG 58.285 40.000 0.00 1.27 40.26 3.16
91 92 7.781548 ACCATCTATATTGGTCGTTAACAAC 57.218 36.000 6.39 0.00 44.15 3.32
92 93 7.562135 ACCATCTATATTGGTCGTTAACAACT 58.438 34.615 6.39 0.00 44.15 3.16
93 94 8.698210 ACCATCTATATTGGTCGTTAACAACTA 58.302 33.333 6.39 0.00 44.15 2.24
94 95 9.193133 CCATCTATATTGGTCGTTAACAACTAG 57.807 37.037 6.39 0.00 0.00 2.57
95 96 9.193133 CATCTATATTGGTCGTTAACAACTAGG 57.807 37.037 6.39 0.00 0.00 3.02
96 97 8.523915 TCTATATTGGTCGTTAACAACTAGGA 57.476 34.615 6.39 0.00 0.00 2.94
97 98 8.970020 TCTATATTGGTCGTTAACAACTAGGAA 58.030 33.333 6.39 0.00 0.00 3.36
98 99 9.760077 CTATATTGGTCGTTAACAACTAGGAAT 57.240 33.333 6.39 0.00 0.00 3.01
101 102 7.894376 TTGGTCGTTAACAACTAGGAATAAG 57.106 36.000 6.39 0.00 0.00 1.73
102 103 6.400568 TGGTCGTTAACAACTAGGAATAAGG 58.599 40.000 6.39 0.00 0.00 2.69
103 104 5.292834 GGTCGTTAACAACTAGGAATAAGGC 59.707 44.000 6.39 0.00 0.00 4.35
104 105 5.870978 GTCGTTAACAACTAGGAATAAGGCA 59.129 40.000 6.39 0.00 0.00 4.75
105 106 6.035758 GTCGTTAACAACTAGGAATAAGGCAG 59.964 42.308 6.39 0.00 0.00 4.85
106 107 5.220605 CGTTAACAACTAGGAATAAGGCAGC 60.221 44.000 6.39 0.00 0.00 5.25
107 108 2.906354 ACAACTAGGAATAAGGCAGCG 58.094 47.619 0.00 0.00 0.00 5.18
108 109 2.213499 CAACTAGGAATAAGGCAGCGG 58.787 52.381 0.00 0.00 0.00 5.52
109 110 1.789523 ACTAGGAATAAGGCAGCGGA 58.210 50.000 0.00 0.00 0.00 5.54
110 111 1.413077 ACTAGGAATAAGGCAGCGGAC 59.587 52.381 0.00 0.00 0.00 4.79
111 112 1.689273 CTAGGAATAAGGCAGCGGACT 59.311 52.381 0.00 0.00 0.00 3.85
112 113 1.789523 AGGAATAAGGCAGCGGACTA 58.210 50.000 0.00 0.00 0.00 2.59
113 114 1.689273 AGGAATAAGGCAGCGGACTAG 59.311 52.381 0.00 0.00 0.00 2.57
114 115 1.503294 GAATAAGGCAGCGGACTAGC 58.497 55.000 0.00 0.00 37.41 3.42
115 116 0.249489 AATAAGGCAGCGGACTAGCG 60.249 55.000 0.00 0.00 43.00 4.26
116 117 2.701163 ATAAGGCAGCGGACTAGCGC 62.701 60.000 0.00 0.00 43.00 5.92
121 122 3.599584 AGCGGACTAGCGCTGTTA 58.400 55.556 22.90 0.00 43.00 2.41
122 123 1.433879 AGCGGACTAGCGCTGTTAG 59.566 57.895 22.90 12.68 43.00 2.34
123 124 2.231618 GCGGACTAGCGCTGTTAGC 61.232 63.158 22.90 19.05 38.02 3.09
125 126 0.179134 CGGACTAGCGCTGTTAGCTT 60.179 55.000 22.90 0.00 43.24 3.74
126 127 1.736032 CGGACTAGCGCTGTTAGCTTT 60.736 52.381 22.90 0.00 43.24 3.51
127 128 2.479049 CGGACTAGCGCTGTTAGCTTTA 60.479 50.000 22.90 0.00 43.24 1.85
128 129 3.718815 GGACTAGCGCTGTTAGCTTTAT 58.281 45.455 22.90 0.00 43.24 1.40
129 130 3.491267 GGACTAGCGCTGTTAGCTTTATG 59.509 47.826 22.90 0.00 43.24 1.90
130 131 4.360563 GACTAGCGCTGTTAGCTTTATGA 58.639 43.478 22.90 0.00 43.24 2.15
131 132 4.113354 ACTAGCGCTGTTAGCTTTATGAC 58.887 43.478 22.90 0.00 43.24 3.06
132 133 2.280628 AGCGCTGTTAGCTTTATGACC 58.719 47.619 10.39 0.00 43.24 4.02
133 134 2.006888 GCGCTGTTAGCTTTATGACCA 58.993 47.619 0.00 0.00 39.60 4.02
134 135 2.614057 GCGCTGTTAGCTTTATGACCAT 59.386 45.455 0.00 0.00 39.60 3.55
135 136 3.065371 GCGCTGTTAGCTTTATGACCATT 59.935 43.478 0.00 0.00 39.60 3.16
136 137 4.438744 GCGCTGTTAGCTTTATGACCATTT 60.439 41.667 0.00 0.00 39.60 2.32
137 138 5.266242 CGCTGTTAGCTTTATGACCATTTC 58.734 41.667 0.00 0.00 39.60 2.17
138 139 5.163764 CGCTGTTAGCTTTATGACCATTTCA 60.164 40.000 0.00 0.00 39.60 2.69
139 140 6.458751 CGCTGTTAGCTTTATGACCATTTCAT 60.459 38.462 0.00 0.00 42.81 2.57
140 141 6.694411 GCTGTTAGCTTTATGACCATTTCATG 59.306 38.462 0.00 0.00 40.82 3.07
141 142 7.629222 GCTGTTAGCTTTATGACCATTTCATGT 60.629 37.037 0.00 0.00 40.82 3.21
142 143 8.800370 TGTTAGCTTTATGACCATTTCATGTA 57.200 30.769 0.00 0.00 45.22 2.29
143 144 9.237187 TGTTAGCTTTATGACCATTTCATGTAA 57.763 29.630 0.00 0.00 45.22 2.41
144 145 9.722056 GTTAGCTTTATGACCATTTCATGTAAG 57.278 33.333 0.00 2.86 45.22 2.34
145 146 7.338800 AGCTTTATGACCATTTCATGTAAGG 57.661 36.000 0.00 0.00 45.22 2.69
146 147 7.118723 AGCTTTATGACCATTTCATGTAAGGA 58.881 34.615 0.00 0.00 45.22 3.36
147 148 7.615365 AGCTTTATGACCATTTCATGTAAGGAA 59.385 33.333 0.00 0.00 45.22 3.36
161 162 9.753674 TTCATGTAAGGAAATTATGACCTTTCT 57.246 29.630 0.00 0.00 42.83 2.52
162 163 9.177608 TCATGTAAGGAAATTATGACCTTTCTG 57.822 33.333 0.00 0.00 42.83 3.02
163 164 9.177608 CATGTAAGGAAATTATGACCTTTCTGA 57.822 33.333 0.00 0.00 42.83 3.27
164 165 8.561738 TGTAAGGAAATTATGACCTTTCTGAC 57.438 34.615 0.00 0.00 42.83 3.51
165 166 7.610305 TGTAAGGAAATTATGACCTTTCTGACC 59.390 37.037 0.00 0.00 42.83 4.02
166 167 6.139679 AGGAAATTATGACCTTTCTGACCA 57.860 37.500 0.00 0.00 33.02 4.02
167 168 6.552008 AGGAAATTATGACCTTTCTGACCAA 58.448 36.000 0.00 0.00 33.02 3.67
168 169 7.010160 AGGAAATTATGACCTTTCTGACCAAA 58.990 34.615 0.00 0.00 33.02 3.28
169 170 7.508977 AGGAAATTATGACCTTTCTGACCAAAA 59.491 33.333 0.00 0.00 33.02 2.44
170 171 8.314021 GGAAATTATGACCTTTCTGACCAAAAT 58.686 33.333 0.00 0.00 33.02 1.82
171 172 9.143631 GAAATTATGACCTTTCTGACCAAAATG 57.856 33.333 0.00 0.00 0.00 2.32
172 173 6.588719 TTATGACCTTTCTGACCAAAATGG 57.411 37.500 0.00 0.00 45.02 3.16
182 183 3.818586 CCAAAATGGTCGCAATGCT 57.181 47.368 2.94 0.00 31.35 3.79
183 184 2.083167 CCAAAATGGTCGCAATGCTT 57.917 45.000 2.94 0.00 31.35 3.91
184 185 2.415776 CCAAAATGGTCGCAATGCTTT 58.584 42.857 2.94 0.00 31.35 3.51
185 186 3.583806 CCAAAATGGTCGCAATGCTTTA 58.416 40.909 2.94 0.00 31.35 1.85
186 187 3.613737 CCAAAATGGTCGCAATGCTTTAG 59.386 43.478 2.94 0.00 31.35 1.85
187 188 3.508744 AAATGGTCGCAATGCTTTAGG 57.491 42.857 2.94 0.00 0.00 2.69
188 189 1.392589 ATGGTCGCAATGCTTTAGGG 58.607 50.000 2.94 0.00 0.00 3.53
189 190 0.037590 TGGTCGCAATGCTTTAGGGT 59.962 50.000 2.94 0.00 0.00 4.34
190 191 1.173913 GGTCGCAATGCTTTAGGGTT 58.826 50.000 2.94 0.00 0.00 4.11
191 192 1.544246 GGTCGCAATGCTTTAGGGTTT 59.456 47.619 2.94 0.00 0.00 3.27
192 193 2.595386 GTCGCAATGCTTTAGGGTTTG 58.405 47.619 2.94 0.00 0.00 2.93
193 194 1.543802 TCGCAATGCTTTAGGGTTTGG 59.456 47.619 2.94 0.00 0.00 3.28
194 195 1.543802 CGCAATGCTTTAGGGTTTGGA 59.456 47.619 2.94 0.00 0.00 3.53
195 196 2.415893 CGCAATGCTTTAGGGTTTGGAG 60.416 50.000 2.94 0.00 0.00 3.86
196 197 2.675032 GCAATGCTTTAGGGTTTGGAGC 60.675 50.000 0.00 0.00 0.00 4.70
197 198 1.852633 ATGCTTTAGGGTTTGGAGCC 58.147 50.000 0.00 0.00 43.96 4.70
198 199 0.251608 TGCTTTAGGGTTTGGAGCCC 60.252 55.000 0.00 0.00 44.74 5.19
203 204 3.327404 GGGTTTGGAGCCCCTCGA 61.327 66.667 0.00 0.00 40.26 4.04
204 205 2.754375 GGTTTGGAGCCCCTCGAA 59.246 61.111 0.00 0.00 0.00 3.71
205 206 1.674651 GGTTTGGAGCCCCTCGAAC 60.675 63.158 0.00 0.00 28.56 3.95
206 207 1.072505 GTTTGGAGCCCCTCGAACA 59.927 57.895 0.00 0.00 31.90 3.18
207 208 0.955919 GTTTGGAGCCCCTCGAACAG 60.956 60.000 0.00 0.00 31.90 3.16
208 209 2.748058 TTTGGAGCCCCTCGAACAGC 62.748 60.000 0.00 0.00 28.56 4.40
209 210 3.394836 GGAGCCCCTCGAACAGCT 61.395 66.667 2.64 2.64 38.56 4.24
210 211 2.665603 GAGCCCCTCGAACAGCTT 59.334 61.111 4.45 0.00 35.23 3.74
211 212 1.003233 GAGCCCCTCGAACAGCTTT 60.003 57.895 4.45 0.00 35.23 3.51
212 213 0.606673 GAGCCCCTCGAACAGCTTTT 60.607 55.000 4.45 0.00 35.23 2.27
213 214 0.890996 AGCCCCTCGAACAGCTTTTG 60.891 55.000 0.00 0.00 29.27 2.44
214 215 0.889186 GCCCCTCGAACAGCTTTTGA 60.889 55.000 0.00 0.00 0.00 2.69
215 216 0.875059 CCCCTCGAACAGCTTTTGAC 59.125 55.000 0.00 0.00 0.00 3.18
216 217 0.875059 CCCTCGAACAGCTTTTGACC 59.125 55.000 0.00 0.00 0.00 4.02
217 218 1.593196 CCTCGAACAGCTTTTGACCA 58.407 50.000 0.00 0.00 0.00 4.02
218 219 1.946768 CCTCGAACAGCTTTTGACCAA 59.053 47.619 0.00 0.00 0.00 3.67
219 220 2.554032 CCTCGAACAGCTTTTGACCAAT 59.446 45.455 0.00 0.00 0.00 3.16
220 221 3.004734 CCTCGAACAGCTTTTGACCAATT 59.995 43.478 0.00 0.00 0.00 2.32
221 222 3.963665 TCGAACAGCTTTTGACCAATTG 58.036 40.909 0.00 0.00 0.00 2.32
222 223 3.052036 CGAACAGCTTTTGACCAATTGG 58.948 45.455 23.31 23.31 42.17 3.16
238 239 6.528537 CCAATTGGTCTCAAATGGTCATAA 57.471 37.500 16.90 0.00 44.76 1.90
239 240 6.934056 CCAATTGGTCTCAAATGGTCATAAA 58.066 36.000 16.90 0.00 44.76 1.40
240 241 7.558604 CCAATTGGTCTCAAATGGTCATAAAT 58.441 34.615 16.90 0.00 44.76 1.40
241 242 7.707893 CCAATTGGTCTCAAATGGTCATAAATC 59.292 37.037 16.90 0.00 44.76 2.17
242 243 8.472413 CAATTGGTCTCAAATGGTCATAAATCT 58.528 33.333 0.00 0.00 36.36 2.40
243 244 9.699410 AATTGGTCTCAAATGGTCATAAATCTA 57.301 29.630 0.00 0.00 36.36 1.98
244 245 9.872684 ATTGGTCTCAAATGGTCATAAATCTAT 57.127 29.630 0.00 0.00 36.36 1.98
245 246 8.681486 TGGTCTCAAATGGTCATAAATCTATG 57.319 34.615 0.00 0.00 36.93 2.23
246 247 8.493607 TGGTCTCAAATGGTCATAAATCTATGA 58.506 33.333 0.00 0.00 41.36 2.15
259 260 9.565090 TCATAAATCTATGACCAATTCTTCCAG 57.435 33.333 0.00 0.00 39.21 3.86
260 261 8.790718 CATAAATCTATGACCAATTCTTCCAGG 58.209 37.037 0.00 0.00 37.68 4.45
261 262 4.778213 TCTATGACCAATTCTTCCAGGG 57.222 45.455 0.00 0.00 0.00 4.45
262 263 4.111577 TCTATGACCAATTCTTCCAGGGT 58.888 43.478 0.00 0.00 33.78 4.34
263 264 2.879103 TGACCAATTCTTCCAGGGTC 57.121 50.000 0.00 0.00 46.40 4.46
264 265 2.879103 GACCAATTCTTCCAGGGTCA 57.121 50.000 0.00 0.00 45.70 4.02
265 266 2.437413 GACCAATTCTTCCAGGGTCAC 58.563 52.381 0.00 0.00 45.70 3.67
266 267 2.040412 GACCAATTCTTCCAGGGTCACT 59.960 50.000 0.00 0.00 45.70 3.41
267 268 4.119903 GACCAATTCTTCCAGGGTCACTG 61.120 52.174 0.00 0.00 45.70 3.66
276 277 3.560226 AGGGTCACTGACAGAAGGT 57.440 52.632 10.08 0.00 33.68 3.50
307 308 9.337396 TGTTGACATATTTCTTGTAGTGTTTCT 57.663 29.630 0.00 0.00 0.00 2.52
310 311 8.289618 TGACATATTTCTTGTAGTGTTTCTTGC 58.710 33.333 0.00 0.00 0.00 4.01
311 312 8.396272 ACATATTTCTTGTAGTGTTTCTTGCT 57.604 30.769 0.00 0.00 0.00 3.91
312 313 8.292448 ACATATTTCTTGTAGTGTTTCTTGCTG 58.708 33.333 0.00 0.00 0.00 4.41
313 314 6.942532 ATTTCTTGTAGTGTTTCTTGCTGA 57.057 33.333 0.00 0.00 0.00 4.26
314 315 6.751514 TTTCTTGTAGTGTTTCTTGCTGAA 57.248 33.333 0.00 0.00 0.00 3.02
315 316 6.751514 TTCTTGTAGTGTTTCTTGCTGAAA 57.248 33.333 2.22 2.22 41.85 2.69
316 317 6.751514 TCTTGTAGTGTTTCTTGCTGAAAA 57.248 33.333 6.95 0.00 45.10 2.29
317 318 7.333528 TCTTGTAGTGTTTCTTGCTGAAAAT 57.666 32.000 6.95 1.41 45.10 1.82
318 319 7.195646 TCTTGTAGTGTTTCTTGCTGAAAATG 58.804 34.615 6.95 0.00 45.10 2.32
319 320 5.830912 TGTAGTGTTTCTTGCTGAAAATGG 58.169 37.500 6.95 0.00 45.10 3.16
320 321 3.721035 AGTGTTTCTTGCTGAAAATGGC 58.279 40.909 6.95 0.00 45.10 4.40
321 322 3.385755 AGTGTTTCTTGCTGAAAATGGCT 59.614 39.130 6.95 2.38 45.10 4.75
322 323 4.584325 AGTGTTTCTTGCTGAAAATGGCTA 59.416 37.500 6.95 0.00 45.10 3.93
323 324 4.919754 GTGTTTCTTGCTGAAAATGGCTAG 59.080 41.667 6.95 0.00 45.10 3.42
324 325 3.855689 TTCTTGCTGAAAATGGCTAGC 57.144 42.857 6.04 6.04 36.72 3.42
325 326 2.094675 TCTTGCTGAAAATGGCTAGCC 58.905 47.619 27.71 27.71 35.36 3.93
326 327 1.135721 CTTGCTGAAAATGGCTAGCCC 59.864 52.381 30.81 15.33 35.36 5.19
338 339 4.316025 TGGCTAGCCCAGTTCTATTTTT 57.684 40.909 30.81 0.00 39.18 1.94
361 362 5.632244 TTAAAGAAATACCCAAACGAGGC 57.368 39.130 0.00 0.00 0.00 4.70
362 363 2.124277 AGAAATACCCAAACGAGGCC 57.876 50.000 0.00 0.00 0.00 5.19
363 364 1.633945 AGAAATACCCAAACGAGGCCT 59.366 47.619 3.86 3.86 0.00 5.19
407 408 5.135508 ACACAGAAGTTTATCAGTAGCGT 57.864 39.130 0.00 0.00 0.00 5.07
419 420 9.401873 GTTTATCAGTAGCGTGGTTTAAAAATT 57.598 29.630 0.00 0.00 0.00 1.82
422 423 5.299782 TCAGTAGCGTGGTTTAAAAATTGGT 59.700 36.000 0.00 0.00 0.00 3.67
463 464 2.026636 AGCGAGGGGTATAAAAACTGCA 60.027 45.455 0.00 0.00 0.00 4.41
626 628 1.680207 GGTAAGACCCCACGCTACTAG 59.320 57.143 0.00 0.00 30.04 2.57
642 644 1.076533 CTAGTAAGCGTGTGCACCCG 61.077 60.000 17.79 17.79 46.23 5.28
661 663 3.083997 GGCCCGATCCACACTCCT 61.084 66.667 0.00 0.00 0.00 3.69
823 828 3.972971 CTCTCCTCCGTCCGTCCGT 62.973 68.421 0.00 0.00 0.00 4.69
937 943 0.035881 CACAGAGCAAGCAGGAAGGA 59.964 55.000 0.00 0.00 0.00 3.36
1013 1026 2.660064 GGAGCATGGTCCTGTCGGT 61.660 63.158 32.11 0.00 33.30 4.69
1026 1039 4.742274 TCGGTGGTGTTCGACAAG 57.258 55.556 0.00 0.00 0.00 3.16
1032 1045 1.116308 TGGTGTTCGACAAGAGGACA 58.884 50.000 0.00 0.00 0.00 4.02
1036 1049 2.933906 GTGTTCGACAAGAGGACAAACA 59.066 45.455 0.00 0.00 0.00 2.83
1158 1177 1.450312 GCCGCTGTTCCTAGTGCAT 60.450 57.895 0.00 0.00 0.00 3.96
1188 1207 2.962569 CTCTTCCTCCGCGACACA 59.037 61.111 8.23 0.00 0.00 3.72
1378 1421 2.360726 TACTGGACAGCTCGCCGA 60.361 61.111 0.00 0.00 0.00 5.54
1424 1467 1.531365 CTCAACCCCTTTGCCTGCA 60.531 57.895 0.00 0.00 34.88 4.41
1475 1518 4.020218 TCTGTCCTGAATCCTGAATTCGTT 60.020 41.667 0.04 0.00 45.78 3.85
1497 1540 8.592155 TCGTTATGATGAACAGTTAATTTCGAG 58.408 33.333 0.00 0.00 0.00 4.04
1540 1583 8.545229 TTTCTTTTTGAAAACAATTGAGCAGA 57.455 26.923 13.59 0.00 41.23 4.26
1546 1589 5.531634 TGAAAACAATTGAGCAGACATTCC 58.468 37.500 13.59 0.00 0.00 3.01
1629 1672 3.899545 TTTCCTCCCTCTCGGCGGT 62.900 63.158 7.21 0.00 0.00 5.68
1652 1695 2.910360 CATCATCCAGGCCCACGA 59.090 61.111 0.00 0.00 0.00 4.35
1695 1738 4.321750 CGACTCAGCTTTTCCTACAAGGTA 60.322 45.833 0.00 0.00 36.53 3.08
1773 1820 3.192422 CACAAGTTCACAACAGAAACCCA 59.808 43.478 0.00 0.00 0.00 4.51
1939 2020 1.888215 ATGCAACTCAGGTCTGTGTG 58.112 50.000 6.47 3.48 37.37 3.82
2003 2084 2.869801 CCACTTCTACGCACTCACAAAA 59.130 45.455 0.00 0.00 0.00 2.44
2282 2379 6.991531 ACATTGCACAACTTAATTTTGGATGT 59.008 30.769 0.00 0.00 0.00 3.06
2353 2464 3.364549 TCCCTCCGTTCGGAATTACTTA 58.635 45.455 14.79 0.00 33.41 2.24
2416 2527 7.145932 AGATAAATTCACTTTTTGGACGAGG 57.854 36.000 0.00 0.00 0.00 4.63
2611 2722 5.812642 GGCTCGAGTTCTGAATCTTTGATTA 59.187 40.000 15.13 0.00 0.00 1.75
2641 2752 1.590610 AAATACGTGGCGGCATTGCA 61.591 50.000 17.19 1.73 36.28 4.08
2649 2760 1.647629 GCGGCATTGCATCTCAGAG 59.352 57.895 11.39 0.00 34.15 3.35
2665 2776 6.798427 TCTCAGAGAAAGGCATGTATAGTT 57.202 37.500 0.00 0.00 0.00 2.24
2705 2816 2.302260 TGGCTTGATAGAGGACTCGAG 58.698 52.381 11.84 11.84 34.09 4.04
2828 2939 0.610232 GCAGGAATGCACCACTCCTT 60.610 55.000 5.89 0.00 36.67 3.36
2846 2957 2.504175 CCTTCCCCTTCGGACATTTCTA 59.496 50.000 0.00 0.00 41.83 2.10
3168 3382 8.023128 AGTCCGATTTTCATTGAGTTATTTGTG 58.977 33.333 0.00 0.00 0.00 3.33
3316 3530 6.723298 TTTATGCCCCATGTATTTAACTGG 57.277 37.500 0.00 0.00 0.00 4.00
3318 3532 3.626930 TGCCCCATGTATTTAACTGGAC 58.373 45.455 0.00 0.00 31.61 4.02
3398 3627 1.649321 TGAACATGCTCAGGGACTCT 58.351 50.000 0.00 0.00 34.60 3.24
3557 3894 0.532862 CAAGCACCGAAGACCACTGT 60.533 55.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.012374 CCTCATCAGTTTTGCCTATGTGT 58.988 43.478 0.00 0.00 0.00 3.72
3 4 4.012374 CACCTCATCAGTTTTGCCTATGT 58.988 43.478 0.00 0.00 0.00 2.29
5 6 3.624777 CCACCTCATCAGTTTTGCCTAT 58.375 45.455 0.00 0.00 0.00 2.57
7 8 1.915141 CCACCTCATCAGTTTTGCCT 58.085 50.000 0.00 0.00 0.00 4.75
8 9 0.244721 GCCACCTCATCAGTTTTGCC 59.755 55.000 0.00 0.00 0.00 4.52
9 10 0.109597 CGCCACCTCATCAGTTTTGC 60.110 55.000 0.00 0.00 0.00 3.68
10 11 0.109597 GCGCCACCTCATCAGTTTTG 60.110 55.000 0.00 0.00 0.00 2.44
11 12 1.244019 GGCGCCACCTCATCAGTTTT 61.244 55.000 24.80 0.00 34.51 2.43
12 13 1.675641 GGCGCCACCTCATCAGTTT 60.676 57.895 24.80 0.00 34.51 2.66
13 14 2.045926 GGCGCCACCTCATCAGTT 60.046 61.111 24.80 0.00 34.51 3.16
22 23 0.391597 TGCTATTACTAGGCGCCACC 59.608 55.000 31.54 0.33 39.61 4.61
23 24 1.865340 GTTGCTATTACTAGGCGCCAC 59.135 52.381 31.54 9.50 0.00 5.01
24 25 1.202604 GGTTGCTATTACTAGGCGCCA 60.203 52.381 31.54 14.00 0.00 5.69
25 26 1.509703 GGTTGCTATTACTAGGCGCC 58.490 55.000 21.89 21.89 0.00 6.53
26 27 1.202604 TGGGTTGCTATTACTAGGCGC 60.203 52.381 0.00 0.00 0.00 6.53
27 28 2.480845 GTGGGTTGCTATTACTAGGCG 58.519 52.381 0.00 0.00 0.00 5.52
28 29 2.171870 TGGTGGGTTGCTATTACTAGGC 59.828 50.000 0.00 0.00 0.00 3.93
29 30 3.199071 TGTGGTGGGTTGCTATTACTAGG 59.801 47.826 0.00 0.00 0.00 3.02
30 31 4.481368 TGTGGTGGGTTGCTATTACTAG 57.519 45.455 0.00 0.00 0.00 2.57
31 32 4.912317 TTGTGGTGGGTTGCTATTACTA 57.088 40.909 0.00 0.00 0.00 1.82
32 33 3.799432 TTGTGGTGGGTTGCTATTACT 57.201 42.857 0.00 0.00 0.00 2.24
33 34 5.400066 AAATTGTGGTGGGTTGCTATTAC 57.600 39.130 0.00 0.00 0.00 1.89
34 35 6.010850 TGTAAATTGTGGTGGGTTGCTATTA 58.989 36.000 0.00 0.00 0.00 0.98
35 36 4.835615 TGTAAATTGTGGTGGGTTGCTATT 59.164 37.500 0.00 0.00 0.00 1.73
36 37 4.411927 TGTAAATTGTGGTGGGTTGCTAT 58.588 39.130 0.00 0.00 0.00 2.97
37 38 3.833732 TGTAAATTGTGGTGGGTTGCTA 58.166 40.909 0.00 0.00 0.00 3.49
38 39 2.672098 TGTAAATTGTGGTGGGTTGCT 58.328 42.857 0.00 0.00 0.00 3.91
39 40 3.389221 CTTGTAAATTGTGGTGGGTTGC 58.611 45.455 0.00 0.00 0.00 4.17
40 41 3.801983 GCCTTGTAAATTGTGGTGGGTTG 60.802 47.826 0.00 0.00 0.00 3.77
41 42 2.367241 GCCTTGTAAATTGTGGTGGGTT 59.633 45.455 0.00 0.00 0.00 4.11
42 43 1.967779 GCCTTGTAAATTGTGGTGGGT 59.032 47.619 0.00 0.00 0.00 4.51
43 44 2.247358 AGCCTTGTAAATTGTGGTGGG 58.753 47.619 0.00 0.00 0.00 4.61
44 45 4.704540 TCATAGCCTTGTAAATTGTGGTGG 59.295 41.667 0.00 0.00 0.00 4.61
45 46 5.393027 GGTCATAGCCTTGTAAATTGTGGTG 60.393 44.000 0.00 0.00 0.00 4.17
46 47 4.705023 GGTCATAGCCTTGTAAATTGTGGT 59.295 41.667 0.00 0.00 0.00 4.16
47 48 4.704540 TGGTCATAGCCTTGTAAATTGTGG 59.295 41.667 0.00 0.00 0.00 4.17
48 49 5.895636 TGGTCATAGCCTTGTAAATTGTG 57.104 39.130 0.00 0.00 0.00 3.33
49 50 6.426587 AGATGGTCATAGCCTTGTAAATTGT 58.573 36.000 0.00 0.00 0.00 2.71
50 51 6.949352 AGATGGTCATAGCCTTGTAAATTG 57.051 37.500 0.00 0.00 0.00 2.32
53 54 9.725019 CAATATAGATGGTCATAGCCTTGTAAA 57.275 33.333 0.00 0.00 0.00 2.01
54 55 8.321353 CCAATATAGATGGTCATAGCCTTGTAA 58.679 37.037 0.17 0.00 33.08 2.41
55 56 7.851228 CCAATATAGATGGTCATAGCCTTGTA 58.149 38.462 0.17 0.00 33.08 2.41
56 57 6.715280 CCAATATAGATGGTCATAGCCTTGT 58.285 40.000 0.17 0.00 33.08 3.16
68 69 9.193133 CTAGTTGTTAACGACCAATATAGATGG 57.807 37.037 20.28 5.93 39.10 3.51
69 70 9.193133 CCTAGTTGTTAACGACCAATATAGATG 57.807 37.037 20.28 2.92 36.23 2.90
70 71 9.139734 TCCTAGTTGTTAACGACCAATATAGAT 57.860 33.333 20.28 3.59 36.23 1.98
71 72 8.523915 TCCTAGTTGTTAACGACCAATATAGA 57.476 34.615 20.28 7.19 36.23 1.98
72 73 9.760077 ATTCCTAGTTGTTAACGACCAATATAG 57.240 33.333 20.28 14.61 36.23 1.31
75 76 9.590451 CTTATTCCTAGTTGTTAACGACCAATA 57.410 33.333 20.28 14.42 36.23 1.90
76 77 7.551617 CCTTATTCCTAGTTGTTAACGACCAAT 59.448 37.037 20.28 15.21 36.23 3.16
77 78 6.875195 CCTTATTCCTAGTTGTTAACGACCAA 59.125 38.462 20.28 9.76 36.23 3.67
78 79 6.400568 CCTTATTCCTAGTTGTTAACGACCA 58.599 40.000 20.28 8.04 36.23 4.02
79 80 5.292834 GCCTTATTCCTAGTTGTTAACGACC 59.707 44.000 20.28 5.11 36.23 4.79
80 81 5.870978 TGCCTTATTCCTAGTTGTTAACGAC 59.129 40.000 16.95 16.95 36.23 4.34
81 82 6.040209 TGCCTTATTCCTAGTTGTTAACGA 57.960 37.500 0.26 0.00 36.23 3.85
82 83 5.220605 GCTGCCTTATTCCTAGTTGTTAACG 60.221 44.000 0.26 0.00 36.23 3.18
83 84 5.220605 CGCTGCCTTATTCCTAGTTGTTAAC 60.221 44.000 0.00 0.00 0.00 2.01
84 85 4.873827 CGCTGCCTTATTCCTAGTTGTTAA 59.126 41.667 0.00 0.00 0.00 2.01
85 86 4.439057 CGCTGCCTTATTCCTAGTTGTTA 58.561 43.478 0.00 0.00 0.00 2.41
86 87 3.270877 CGCTGCCTTATTCCTAGTTGTT 58.729 45.455 0.00 0.00 0.00 2.83
87 88 2.420129 CCGCTGCCTTATTCCTAGTTGT 60.420 50.000 0.00 0.00 0.00 3.32
88 89 2.158957 TCCGCTGCCTTATTCCTAGTTG 60.159 50.000 0.00 0.00 0.00 3.16
89 90 2.116238 TCCGCTGCCTTATTCCTAGTT 58.884 47.619 0.00 0.00 0.00 2.24
90 91 1.413077 GTCCGCTGCCTTATTCCTAGT 59.587 52.381 0.00 0.00 0.00 2.57
91 92 1.689273 AGTCCGCTGCCTTATTCCTAG 59.311 52.381 0.00 0.00 0.00 3.02
92 93 1.789523 AGTCCGCTGCCTTATTCCTA 58.210 50.000 0.00 0.00 0.00 2.94
93 94 1.689273 CTAGTCCGCTGCCTTATTCCT 59.311 52.381 0.00 0.00 0.00 3.36
94 95 1.874320 GCTAGTCCGCTGCCTTATTCC 60.874 57.143 0.00 0.00 0.00 3.01
95 96 1.503294 GCTAGTCCGCTGCCTTATTC 58.497 55.000 0.00 0.00 0.00 1.75
96 97 0.249489 CGCTAGTCCGCTGCCTTATT 60.249 55.000 0.00 0.00 0.00 1.40
97 98 1.364171 CGCTAGTCCGCTGCCTTAT 59.636 57.895 0.00 0.00 0.00 1.73
98 99 2.805546 CGCTAGTCCGCTGCCTTA 59.194 61.111 0.00 0.00 0.00 2.69
106 107 3.999051 GCTAACAGCGCTAGTCCG 58.001 61.111 10.99 0.00 0.00 4.79
113 114 9.740134 ATGAAATGGTCATAAAGCTAACAGCGC 62.740 40.741 0.00 0.00 45.29 5.92
114 115 6.458751 ATGAAATGGTCATAAAGCTAACAGCG 60.459 38.462 0.00 0.00 45.29 5.18
115 116 6.194796 TGAAATGGTCATAAAGCTAACAGC 57.805 37.500 0.00 0.00 42.84 4.40
135 136 9.753674 AGAAAGGTCATAATTTCCTTACATGAA 57.246 29.630 0.00 0.00 40.18 2.57
136 137 9.177608 CAGAAAGGTCATAATTTCCTTACATGA 57.822 33.333 0.00 0.00 40.18 3.07
137 138 9.177608 TCAGAAAGGTCATAATTTCCTTACATG 57.822 33.333 0.00 0.00 40.18 3.21
138 139 9.178758 GTCAGAAAGGTCATAATTTCCTTACAT 57.821 33.333 0.00 0.00 40.18 2.29
139 140 7.610305 GGTCAGAAAGGTCATAATTTCCTTACA 59.390 37.037 0.00 0.00 40.18 2.41
140 141 7.610305 TGGTCAGAAAGGTCATAATTTCCTTAC 59.390 37.037 0.00 0.00 40.18 2.34
141 142 7.695055 TGGTCAGAAAGGTCATAATTTCCTTA 58.305 34.615 0.00 0.00 40.18 2.69
142 143 6.552008 TGGTCAGAAAGGTCATAATTTCCTT 58.448 36.000 0.00 0.00 42.47 3.36
143 144 6.139679 TGGTCAGAAAGGTCATAATTTCCT 57.860 37.500 0.00 0.00 36.31 3.36
144 145 6.834168 TTGGTCAGAAAGGTCATAATTTCC 57.166 37.500 0.00 0.00 36.31 3.13
145 146 9.143631 CATTTTGGTCAGAAAGGTCATAATTTC 57.856 33.333 0.00 0.00 35.99 2.17
146 147 8.096414 CCATTTTGGTCAGAAAGGTCATAATTT 58.904 33.333 0.00 0.00 31.35 1.82
147 148 7.614494 CCATTTTGGTCAGAAAGGTCATAATT 58.386 34.615 0.00 0.00 31.35 1.40
148 149 7.174107 CCATTTTGGTCAGAAAGGTCATAAT 57.826 36.000 0.00 0.00 31.35 1.28
149 150 6.588719 CCATTTTGGTCAGAAAGGTCATAA 57.411 37.500 0.00 0.00 31.35 1.90
164 165 2.083167 AAGCATTGCGACCATTTTGG 57.917 45.000 2.38 0.00 45.02 3.28
165 166 3.613737 CCTAAAGCATTGCGACCATTTTG 59.386 43.478 2.38 0.00 0.00 2.44
166 167 3.368323 CCCTAAAGCATTGCGACCATTTT 60.368 43.478 2.38 0.02 0.00 1.82
167 168 2.166254 CCCTAAAGCATTGCGACCATTT 59.834 45.455 2.38 0.74 0.00 2.32
168 169 1.750778 CCCTAAAGCATTGCGACCATT 59.249 47.619 2.38 0.00 0.00 3.16
169 170 1.340991 ACCCTAAAGCATTGCGACCAT 60.341 47.619 2.38 0.00 0.00 3.55
170 171 0.037590 ACCCTAAAGCATTGCGACCA 59.962 50.000 2.38 0.00 0.00 4.02
171 172 1.173913 AACCCTAAAGCATTGCGACC 58.826 50.000 2.38 0.00 0.00 4.79
172 173 2.595386 CAAACCCTAAAGCATTGCGAC 58.405 47.619 2.38 0.00 0.00 5.19
173 174 1.543802 CCAAACCCTAAAGCATTGCGA 59.456 47.619 2.38 0.00 0.00 5.10
174 175 1.543802 TCCAAACCCTAAAGCATTGCG 59.456 47.619 2.38 0.00 0.00 4.85
175 176 2.675032 GCTCCAAACCCTAAAGCATTGC 60.675 50.000 0.00 0.00 33.21 3.56
176 177 2.094026 GGCTCCAAACCCTAAAGCATTG 60.094 50.000 0.00 0.00 34.65 2.82
177 178 2.179427 GGCTCCAAACCCTAAAGCATT 58.821 47.619 0.00 0.00 34.65 3.56
178 179 1.619704 GGGCTCCAAACCCTAAAGCAT 60.620 52.381 0.00 0.00 44.68 3.79
179 180 0.251608 GGGCTCCAAACCCTAAAGCA 60.252 55.000 0.00 0.00 44.68 3.91
180 181 2.579878 GGGCTCCAAACCCTAAAGC 58.420 57.895 0.00 0.00 44.68 3.51
187 188 1.674651 GTTCGAGGGGCTCCAAACC 60.675 63.158 4.79 0.00 34.83 3.27
188 189 0.955919 CTGTTCGAGGGGCTCCAAAC 60.956 60.000 4.79 7.02 34.83 2.93
189 190 1.374947 CTGTTCGAGGGGCTCCAAA 59.625 57.895 4.79 0.00 34.83 3.28
190 191 3.068881 CTGTTCGAGGGGCTCCAA 58.931 61.111 4.79 0.00 34.83 3.53
191 192 3.706373 GCTGTTCGAGGGGCTCCA 61.706 66.667 4.79 0.00 34.83 3.86
192 193 2.470938 AAAGCTGTTCGAGGGGCTCC 62.471 60.000 0.00 0.00 33.63 4.70
193 194 0.606673 AAAAGCTGTTCGAGGGGCTC 60.607 55.000 8.17 0.00 33.63 4.70
194 195 0.890996 CAAAAGCTGTTCGAGGGGCT 60.891 55.000 0.00 2.95 36.53 5.19
195 196 0.889186 TCAAAAGCTGTTCGAGGGGC 60.889 55.000 0.00 0.00 0.00 5.80
196 197 0.875059 GTCAAAAGCTGTTCGAGGGG 59.125 55.000 0.00 0.00 0.00 4.79
197 198 0.875059 GGTCAAAAGCTGTTCGAGGG 59.125 55.000 0.00 0.00 0.00 4.30
198 199 1.593196 TGGTCAAAAGCTGTTCGAGG 58.407 50.000 0.00 0.00 0.00 4.63
199 200 3.904136 ATTGGTCAAAAGCTGTTCGAG 57.096 42.857 0.00 0.00 0.00 4.04
200 201 3.243367 CCAATTGGTCAAAAGCTGTTCGA 60.243 43.478 16.90 0.00 0.00 3.71
201 202 3.052036 CCAATTGGTCAAAAGCTGTTCG 58.948 45.455 16.90 0.00 0.00 3.95
216 217 8.472413 AGATTTATGACCATTTGAGACCAATTG 58.528 33.333 0.00 0.00 34.90 2.32
217 218 8.599624 AGATTTATGACCATTTGAGACCAATT 57.400 30.769 0.00 0.00 31.46 2.32
218 219 9.872684 ATAGATTTATGACCATTTGAGACCAAT 57.127 29.630 0.00 0.00 31.46 3.16
219 220 9.123902 CATAGATTTATGACCATTTGAGACCAA 57.876 33.333 0.00 0.00 39.22 3.67
220 221 8.493607 TCATAGATTTATGACCATTTGAGACCA 58.506 33.333 1.89 0.00 40.50 4.02
221 222 8.908786 TCATAGATTTATGACCATTTGAGACC 57.091 34.615 1.89 0.00 40.50 3.85
233 234 9.565090 CTGGAAGAATTGGTCATAGATTTATGA 57.435 33.333 1.89 1.89 39.05 2.15
234 235 8.790718 CCTGGAAGAATTGGTCATAGATTTATG 58.209 37.037 0.00 0.00 35.76 1.90
235 236 7.946776 CCCTGGAAGAATTGGTCATAGATTTAT 59.053 37.037 0.00 0.00 34.07 1.40
236 237 7.091993 ACCCTGGAAGAATTGGTCATAGATTTA 60.092 37.037 0.00 0.00 34.07 1.40
237 238 6.131961 CCCTGGAAGAATTGGTCATAGATTT 58.868 40.000 0.00 0.00 34.07 2.17
238 239 5.194537 ACCCTGGAAGAATTGGTCATAGATT 59.805 40.000 0.00 0.00 34.07 2.40
239 240 4.728860 ACCCTGGAAGAATTGGTCATAGAT 59.271 41.667 0.00 0.00 34.07 1.98
240 241 4.111577 ACCCTGGAAGAATTGGTCATAGA 58.888 43.478 0.00 0.00 34.07 1.98
241 242 4.080356 TGACCCTGGAAGAATTGGTCATAG 60.080 45.833 5.61 0.00 43.56 2.23
242 243 3.849574 TGACCCTGGAAGAATTGGTCATA 59.150 43.478 5.61 0.00 43.56 2.15
243 244 2.649312 TGACCCTGGAAGAATTGGTCAT 59.351 45.455 5.61 0.00 43.56 3.06
244 245 2.061848 TGACCCTGGAAGAATTGGTCA 58.938 47.619 5.61 5.61 45.33 4.02
245 246 2.040412 AGTGACCCTGGAAGAATTGGTC 59.960 50.000 0.00 0.00 40.60 4.02
246 247 2.065799 AGTGACCCTGGAAGAATTGGT 58.934 47.619 0.00 0.00 34.07 3.67
247 248 2.040278 TCAGTGACCCTGGAAGAATTGG 59.960 50.000 0.00 0.00 41.83 3.16
248 249 3.077359 GTCAGTGACCCTGGAAGAATTG 58.923 50.000 12.54 0.00 41.83 2.32
249 250 2.711009 TGTCAGTGACCCTGGAAGAATT 59.289 45.455 20.43 0.00 41.83 2.17
250 251 2.304180 CTGTCAGTGACCCTGGAAGAAT 59.696 50.000 20.43 0.00 41.83 2.40
251 252 1.694150 CTGTCAGTGACCCTGGAAGAA 59.306 52.381 20.43 0.00 41.83 2.52
252 253 1.133167 TCTGTCAGTGACCCTGGAAGA 60.133 52.381 20.43 12.08 41.83 2.87
253 254 1.342074 TCTGTCAGTGACCCTGGAAG 58.658 55.000 20.43 9.93 41.83 3.46
254 255 1.694150 CTTCTGTCAGTGACCCTGGAA 59.306 52.381 20.43 16.12 41.83 3.53
255 256 1.342074 CTTCTGTCAGTGACCCTGGA 58.658 55.000 20.43 10.33 41.83 3.86
256 257 0.322975 CCTTCTGTCAGTGACCCTGG 59.677 60.000 20.43 12.82 41.83 4.45
257 258 1.001406 GACCTTCTGTCAGTGACCCTG 59.999 57.143 20.43 10.65 43.85 4.45
258 259 1.343069 GACCTTCTGTCAGTGACCCT 58.657 55.000 20.43 0.00 43.85 4.34
259 260 3.917072 GACCTTCTGTCAGTGACCC 57.083 57.895 20.43 0.00 43.85 4.46
281 282 9.337396 AGAAACACTACAAGAAATATGTCAACA 57.663 29.630 0.00 0.00 32.27 3.33
284 285 8.289618 GCAAGAAACACTACAAGAAATATGTCA 58.710 33.333 0.00 0.00 32.27 3.58
285 286 8.507249 AGCAAGAAACACTACAAGAAATATGTC 58.493 33.333 0.00 0.00 32.27 3.06
286 287 8.292448 CAGCAAGAAACACTACAAGAAATATGT 58.708 33.333 0.00 0.00 34.81 2.29
287 288 8.506437 TCAGCAAGAAACACTACAAGAAATATG 58.494 33.333 0.00 0.00 0.00 1.78
288 289 8.621532 TCAGCAAGAAACACTACAAGAAATAT 57.378 30.769 0.00 0.00 0.00 1.28
289 290 8.445275 TTCAGCAAGAAACACTACAAGAAATA 57.555 30.769 0.00 0.00 32.05 1.40
290 291 6.942532 TCAGCAAGAAACACTACAAGAAAT 57.057 33.333 0.00 0.00 0.00 2.17
291 292 6.751514 TTCAGCAAGAAACACTACAAGAAA 57.248 33.333 0.00 0.00 32.05 2.52
292 293 6.751514 TTTCAGCAAGAAACACTACAAGAA 57.248 33.333 0.77 0.00 41.17 2.52
293 294 6.751514 TTTTCAGCAAGAAACACTACAAGA 57.248 33.333 4.11 0.00 45.48 3.02
294 295 6.418819 CCATTTTCAGCAAGAAACACTACAAG 59.581 38.462 4.11 0.00 45.48 3.16
295 296 6.272318 CCATTTTCAGCAAGAAACACTACAA 58.728 36.000 4.11 0.00 45.48 2.41
296 297 5.735922 GCCATTTTCAGCAAGAAACACTACA 60.736 40.000 4.11 0.00 45.48 2.74
297 298 4.681483 GCCATTTTCAGCAAGAAACACTAC 59.319 41.667 4.11 0.00 45.48 2.73
298 299 4.584325 AGCCATTTTCAGCAAGAAACACTA 59.416 37.500 4.11 0.00 45.48 2.74
299 300 3.385755 AGCCATTTTCAGCAAGAAACACT 59.614 39.130 4.11 0.00 45.48 3.55
300 301 3.721035 AGCCATTTTCAGCAAGAAACAC 58.279 40.909 4.11 0.00 45.48 3.32
301 302 4.559300 GCTAGCCATTTTCAGCAAGAAACA 60.559 41.667 2.29 0.00 45.48 2.83
302 303 3.922850 GCTAGCCATTTTCAGCAAGAAAC 59.077 43.478 2.29 0.00 45.48 2.78
303 304 3.056607 GGCTAGCCATTTTCAGCAAGAAA 60.057 43.478 29.33 0.77 39.06 2.52
304 305 2.493278 GGCTAGCCATTTTCAGCAAGAA 59.507 45.455 29.33 0.00 35.69 2.52
305 306 2.094675 GGCTAGCCATTTTCAGCAAGA 58.905 47.619 29.33 0.00 35.69 3.02
306 307 1.135721 GGGCTAGCCATTTTCAGCAAG 59.864 52.381 34.09 0.00 37.98 4.01
307 308 1.185315 GGGCTAGCCATTTTCAGCAA 58.815 50.000 34.09 0.00 37.98 3.91
308 309 0.039472 TGGGCTAGCCATTTTCAGCA 59.961 50.000 34.09 17.63 37.98 4.41
309 310 0.743097 CTGGGCTAGCCATTTTCAGC 59.257 55.000 34.09 15.15 37.98 4.26
310 311 2.134789 ACTGGGCTAGCCATTTTCAG 57.865 50.000 34.09 29.60 37.98 3.02
311 312 2.041620 AGAACTGGGCTAGCCATTTTCA 59.958 45.455 34.09 20.93 37.98 2.69
312 313 2.728007 AGAACTGGGCTAGCCATTTTC 58.272 47.619 34.09 27.79 37.98 2.29
313 314 2.907458 AGAACTGGGCTAGCCATTTT 57.093 45.000 34.09 22.18 37.98 1.82
314 315 4.526438 AATAGAACTGGGCTAGCCATTT 57.474 40.909 34.09 22.53 37.98 2.32
315 316 4.526438 AAATAGAACTGGGCTAGCCATT 57.474 40.909 34.09 23.91 37.98 3.16
316 317 4.526438 AAAATAGAACTGGGCTAGCCAT 57.474 40.909 34.09 16.89 37.98 4.40
317 318 4.316025 AAAAATAGAACTGGGCTAGCCA 57.684 40.909 34.09 19.19 37.98 4.75
336 337 6.924612 GCCTCGTTTGGGTATTTCTTTAAAAA 59.075 34.615 0.00 0.00 0.00 1.94
337 338 6.448852 GCCTCGTTTGGGTATTTCTTTAAAA 58.551 36.000 0.00 0.00 0.00 1.52
338 339 5.047872 GGCCTCGTTTGGGTATTTCTTTAAA 60.048 40.000 0.00 0.00 0.00 1.52
339 340 4.460034 GGCCTCGTTTGGGTATTTCTTTAA 59.540 41.667 0.00 0.00 0.00 1.52
340 341 4.011698 GGCCTCGTTTGGGTATTTCTTTA 58.988 43.478 0.00 0.00 0.00 1.85
341 342 2.823747 GGCCTCGTTTGGGTATTTCTTT 59.176 45.455 0.00 0.00 0.00 2.52
342 343 2.041216 AGGCCTCGTTTGGGTATTTCTT 59.959 45.455 0.00 0.00 0.00 2.52
343 344 1.633945 AGGCCTCGTTTGGGTATTTCT 59.366 47.619 0.00 0.00 0.00 2.52
344 345 2.014857 GAGGCCTCGTTTGGGTATTTC 58.985 52.381 19.06 0.00 0.00 2.17
345 346 1.353022 TGAGGCCTCGTTTGGGTATTT 59.647 47.619 27.43 0.00 0.00 1.40
346 347 0.988832 TGAGGCCTCGTTTGGGTATT 59.011 50.000 27.43 0.00 0.00 1.89
347 348 0.252197 GTGAGGCCTCGTTTGGGTAT 59.748 55.000 27.43 0.00 0.00 2.73
348 349 0.834687 AGTGAGGCCTCGTTTGGGTA 60.835 55.000 27.43 4.53 0.00 3.69
349 350 0.834687 TAGTGAGGCCTCGTTTGGGT 60.835 55.000 27.43 9.07 0.00 4.51
350 351 0.391263 GTAGTGAGGCCTCGTTTGGG 60.391 60.000 27.43 0.00 0.00 4.12
351 352 0.608640 AGTAGTGAGGCCTCGTTTGG 59.391 55.000 27.43 0.00 0.00 3.28
352 353 2.159226 CCTAGTAGTGAGGCCTCGTTTG 60.159 54.545 27.43 12.92 0.00 2.93
353 354 2.100989 CCTAGTAGTGAGGCCTCGTTT 58.899 52.381 27.43 17.12 0.00 3.60
354 355 1.685491 CCCTAGTAGTGAGGCCTCGTT 60.685 57.143 27.43 19.60 32.18 3.85
355 356 0.106619 CCCTAGTAGTGAGGCCTCGT 60.107 60.000 27.43 19.32 32.18 4.18
356 357 0.183014 TCCCTAGTAGTGAGGCCTCG 59.817 60.000 27.43 11.22 32.18 4.63
357 358 2.456073 TTCCCTAGTAGTGAGGCCTC 57.544 55.000 26.78 26.78 32.18 4.70
358 359 2.838813 GTTTTCCCTAGTAGTGAGGCCT 59.161 50.000 3.86 3.86 32.18 5.19
359 360 2.093075 GGTTTTCCCTAGTAGTGAGGCC 60.093 54.545 0.00 0.00 32.18 5.19
360 361 2.838813 AGGTTTTCCCTAGTAGTGAGGC 59.161 50.000 0.00 0.00 43.87 4.70
361 362 6.809976 ATAAGGTTTTCCCTAGTAGTGAGG 57.190 41.667 0.00 0.00 45.47 3.86
362 363 8.196103 GTGTATAAGGTTTTCCCTAGTAGTGAG 58.804 40.741 0.00 0.00 45.47 3.51
363 364 7.675195 TGTGTATAAGGTTTTCCCTAGTAGTGA 59.325 37.037 0.00 0.00 45.47 3.41
407 408 5.069781 AGCAGTAGCACCAATTTTTAAACCA 59.930 36.000 0.00 0.00 45.49 3.67
419 420 7.273320 CTACTACTAATTAGCAGTAGCACCA 57.727 40.000 28.13 10.34 46.25 4.17
661 663 2.204029 GGAGGTGGTGGTGGGGTA 60.204 66.667 0.00 0.00 0.00 3.69
736 741 0.029163 TGGGGATCTGGATTGGGCTA 60.029 55.000 0.00 0.00 0.00 3.93
919 925 0.324285 CTCCTTCCTGCTTGCTCTGT 59.676 55.000 0.00 0.00 0.00 3.41
921 927 1.299321 GCTCCTTCCTGCTTGCTCT 59.701 57.895 0.00 0.00 0.00 4.09
985 997 2.046023 CATGCTCCCTGCGACCAA 60.046 61.111 0.00 0.00 46.63 3.67
986 998 4.100084 CCATGCTCCCTGCGACCA 62.100 66.667 0.00 0.00 46.63 4.02
1013 1026 1.116308 TGTCCTCTTGTCGAACACCA 58.884 50.000 0.00 0.00 0.00 4.17
1026 1039 3.256631 AGCAATCCACATTGTTTGTCCTC 59.743 43.478 2.61 0.00 41.51 3.71
1032 1045 3.055675 CCATGGAGCAATCCACATTGTTT 60.056 43.478 5.56 0.00 43.37 2.83
1036 1049 1.117150 GCCATGGAGCAATCCACATT 58.883 50.000 18.40 0.00 43.37 2.71
1188 1207 1.377725 CATGGGGAAGAGCAGCGTT 60.378 57.895 0.00 0.00 0.00 4.84
1336 1379 2.421314 CACACCGAGTGCACTCCA 59.579 61.111 35.07 0.00 42.15 3.86
1424 1467 0.537188 AAGGCCGATCGAACACTCAT 59.463 50.000 18.66 0.00 0.00 2.90
1497 1540 5.444663 AGAAAGTTCAGGCAAAGACAATC 57.555 39.130 0.00 0.00 0.00 2.67
1499 1542 5.659440 AAAGAAAGTTCAGGCAAAGACAA 57.341 34.783 0.00 0.00 0.00 3.18
1540 1583 2.762327 GGAATTGCATGTCCAGGAATGT 59.238 45.455 10.57 0.00 33.79 2.71
1546 1589 1.205417 GTTGGGGAATTGCATGTCCAG 59.795 52.381 15.92 0.00 35.44 3.86
1629 1672 2.124024 GCCTGGATGATGCTGCCA 60.124 61.111 0.00 0.00 0.00 4.92
1639 1682 0.112412 AACTTTTCGTGGGCCTGGAT 59.888 50.000 4.53 0.00 0.00 3.41
1652 1695 0.404426 CTTCTCCCCGGGGAACTTTT 59.596 55.000 41.16 0.00 44.66 2.27
1683 1726 1.631898 GGGGTGCTTACCTTGTAGGAA 59.368 52.381 0.00 0.00 37.67 3.36
1695 1738 0.550147 ATCAGGTAGGTGGGGTGCTT 60.550 55.000 0.00 0.00 0.00 3.91
1773 1820 2.228582 CGGCTCAGATCATCTCTCGATT 59.771 50.000 0.00 0.00 29.16 3.34
1803 1852 3.766691 GCACCCGCTCCCGTTCTA 61.767 66.667 0.00 0.00 34.30 2.10
1915 1964 0.111061 AGACCTGAGTTGCATTGCCA 59.889 50.000 6.12 0.00 0.00 4.92
1979 2060 2.299013 TGTGAGTGCGTAGAAGTGGAAT 59.701 45.455 0.00 0.00 0.00 3.01
2003 2084 2.098607 CGGCATGATCAACTGCATTTCT 59.901 45.455 20.02 0.00 40.18 2.52
2122 2209 0.036010 CTGACCGAATGGACCAGCTT 60.036 55.000 0.00 0.00 39.21 3.74
2187 2279 1.219646 GACCAACACGGAAGCGTAAA 58.780 50.000 0.00 0.00 38.63 2.01
2202 2294 0.040058 TACGGGGAAGCTACTGACCA 59.960 55.000 0.00 0.00 0.00 4.02
2282 2379 4.096833 ACATAGTTAACGCACCGATCAGTA 59.903 41.667 0.00 0.00 0.00 2.74
2416 2527 3.641906 TCTACTCCCTCCATTCGGAATTC 59.358 47.826 0.00 0.00 42.21 2.17
2514 2625 0.764369 TCCACTCTCAACACCAGCCT 60.764 55.000 0.00 0.00 0.00 4.58
2611 2722 3.426963 CGCCACGTATTTACCTTTGCAAT 60.427 43.478 0.00 0.00 0.00 3.56
2641 2752 6.992664 ACTATACATGCCTTTCTCTGAGAT 57.007 37.500 8.42 0.00 0.00 2.75
2649 2760 6.708054 ACTAGCATCAACTATACATGCCTTTC 59.292 38.462 0.00 0.00 43.40 2.62
2665 2776 6.356556 AGCCATATGTACAAAACTAGCATCA 58.643 36.000 0.00 0.00 0.00 3.07
2705 2816 7.482654 TGCAACATGTATATAAAGAGTCTGC 57.517 36.000 0.00 0.63 0.00 4.26
3013 3126 6.753279 ACAGATGTGCATTCGAAAATATTTGG 59.247 34.615 0.00 0.00 0.00 3.28
3022 3135 6.252967 ACAAAATACAGATGTGCATTCGAA 57.747 33.333 0.00 0.00 0.00 3.71
3316 3530 3.376546 GGCATCAGGACAGAAAAGATGTC 59.623 47.826 0.00 0.00 45.12 3.06
3318 3532 3.618351 AGGCATCAGGACAGAAAAGATG 58.382 45.455 0.00 0.00 39.17 2.90
3398 3627 5.477984 GCATCTAGATTTTATCCATTGCCCA 59.522 40.000 1.33 0.00 0.00 5.36
3557 3894 6.040278 TGAAAATGTTAAGTGCAGGAACATGA 59.960 34.615 17.15 4.54 41.71 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.