Multiple sequence alignment - TraesCS2B01G094900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G094900 chr2B 100.000 2543 0 0 1 2543 54788270 54785728 0.000000e+00 4697.0
1 TraesCS2B01G094900 chr2B 83.614 830 68 30 792 1575 122926383 122927190 0.000000e+00 717.0
2 TraesCS2B01G094900 chr2B 83.871 806 71 32 792 1572 55210416 55209645 0.000000e+00 713.0
3 TraesCS2B01G094900 chr2B 86.621 441 39 10 1150 1583 55032466 55032039 1.070000e-128 470.0
4 TraesCS2B01G094900 chr2B 86.232 414 39 7 1146 1553 54887924 54887523 1.400000e-117 433.0
5 TraesCS2B01G094900 chr2B 87.031 293 31 2 1701 1987 55698596 55698305 8.780000e-85 324.0
6 TraesCS2B01G094900 chr2B 85.522 297 40 1 1701 1997 55209545 55209252 8.840000e-80 307.0
7 TraesCS2B01G094900 chr2B 87.500 168 18 1 2293 2460 54886389 54886225 9.290000e-45 191.0
8 TraesCS2B01G094900 chr2B 89.583 144 13 2 2319 2462 122993978 122994119 5.590000e-42 182.0
9 TraesCS2B01G094900 chr2B 80.255 157 19 8 520 667 42980139 42980292 9.620000e-20 108.0
10 TraesCS2B01G094900 chr2B 92.308 65 5 0 2038 2102 55225348 55225284 2.690000e-15 93.5
11 TraesCS2B01G094900 chr2B 93.103 58 4 0 2038 2095 55853621 55853564 4.510000e-13 86.1
12 TraesCS2B01G094900 chr2B 97.143 35 1 0 1640 1674 54887469 54887435 2.730000e-05 60.2
13 TraesCS2B01G094900 chr2D 90.952 1271 36 14 747 2008 32993014 32991814 0.000000e+00 1637.0
14 TraesCS2B01G094900 chr2D 85.519 877 53 29 761 1583 33165491 33164635 0.000000e+00 848.0
15 TraesCS2B01G094900 chr2D 84.566 784 79 21 792 1555 33315536 33314775 0.000000e+00 739.0
16 TraesCS2B01G094900 chr2D 83.212 822 80 26 799 1580 79084882 79085685 0.000000e+00 701.0
17 TraesCS2B01G094900 chr2D 89.218 371 28 6 1183 1553 33049253 33048895 1.070000e-123 453.0
18 TraesCS2B01G094900 chr2D 85.131 343 37 9 1647 1984 33048636 33048303 3.130000e-89 339.0
19 TraesCS2B01G094900 chr2D 87.248 298 32 1 1701 1992 33580389 33580092 4.050000e-88 335.0
20 TraesCS2B01G094900 chr2D 88.489 278 15 1 2283 2543 32991658 32991381 1.140000e-83 320.0
21 TraesCS2B01G094900 chr2D 86.149 296 34 2 1699 1987 33373441 33373146 1.900000e-81 313.0
22 TraesCS2B01G094900 chr2D 97.674 129 2 1 2079 2207 32991786 32991659 1.180000e-53 220.0
23 TraesCS2B01G094900 chr2D 91.613 155 12 1 146 300 33015251 33015098 1.980000e-51 213.0
24 TraesCS2B01G094900 chr2D 92.908 141 9 1 4 143 33015619 33015479 1.190000e-48 204.0
25 TraesCS2B01G094900 chr2D 95.385 65 3 0 2038 2102 33371817 33371753 1.240000e-18 104.0
26 TraesCS2B01G094900 chr2D 97.143 35 1 0 1640 1674 33048821 33048787 2.730000e-05 60.2
27 TraesCS2B01G094900 chr2D 100.000 29 0 0 1605 1633 33048880 33048852 1.000000e-03 54.7
28 TraesCS2B01G094900 chr2A 89.005 955 32 17 746 1696 36190798 36189913 0.000000e+00 1114.0
29 TraesCS2B01G094900 chr2A 87.711 830 62 17 764 1583 36235746 36234947 0.000000e+00 931.0
30 TraesCS2B01G094900 chr2A 83.313 815 85 19 792 1575 79342308 79343102 0.000000e+00 704.0
31 TraesCS2B01G094900 chr2A 91.213 478 20 9 1748 2207 36189901 36189428 4.620000e-177 630.0
32 TraesCS2B01G094900 chr2A 86.824 425 38 7 1146 1564 36202791 36202379 2.310000e-125 459.0
33 TraesCS2B01G094900 chr2A 89.124 331 30 5 839 1165 36203217 36202889 8.470000e-110 407.0
34 TraesCS2B01G094900 chr2A 85.859 297 36 2 1704 1994 36399388 36399092 6.830000e-81 311.0
35 TraesCS2B01G094900 chr2A 85.382 301 37 2 1699 1992 36411061 36410761 3.180000e-79 305.0
36 TraesCS2B01G094900 chr2A 86.500 200 9 2 2362 2543 36189405 36189206 1.190000e-48 204.0
37 TraesCS2B01G094900 chr2A 91.549 142 11 1 2322 2462 1212240 1212381 7.180000e-46 195.0
38 TraesCS2B01G094900 chr2A 86.709 158 18 3 2307 2462 79344075 79344231 3.360000e-39 172.0
39 TraesCS2B01G094900 chr2A 91.509 106 5 3 2185 2286 532594 532489 2.640000e-30 143.0
40 TraesCS2B01G094900 chr2A 93.750 96 3 2 2204 2297 166784987 166785081 9.490000e-30 141.0
41 TraesCS2B01G094900 chr2A 97.143 35 1 0 1640 1674 36202353 36202319 2.730000e-05 60.2
42 TraesCS2B01G094900 chr2A 97.143 35 1 0 746 780 36203264 36203230 2.730000e-05 60.2
43 TraesCS2B01G094900 chr2A 97.143 35 0 1 2144 2178 373454441 373454408 9.830000e-05 58.4
44 TraesCS2B01G094900 chr6A 92.199 141 10 1 2323 2462 108079579 108079439 5.550000e-47 198.0
45 TraesCS2B01G094900 chr6A 86.301 146 13 3 520 658 1056215 1056070 4.380000e-33 152.0
46 TraesCS2B01G094900 chr6A 84.211 76 10 2 2035 2108 31880691 31880766 3.510000e-09 73.1
47 TraesCS2B01G094900 chr7D 91.549 142 10 2 2322 2462 239730503 239730363 7.180000e-46 195.0
48 TraesCS2B01G094900 chr7D 97.143 35 0 1 2144 2178 481607481 481607514 9.830000e-05 58.4
49 TraesCS2B01G094900 chr5A 91.489 141 11 1 2323 2462 565537168 565537028 2.580000e-45 193.0
50 TraesCS2B01G094900 chr7A 85.616 146 13 4 520 658 343181658 343181514 2.040000e-31 147.0
51 TraesCS2B01G094900 chr7A 83.562 146 16 4 520 658 26308593 26308449 2.050000e-26 130.0
52 TraesCS2B01G094900 chr7A 90.541 74 6 1 585 658 684106816 684106744 2.080000e-16 97.1
53 TraesCS2B01G094900 chr5B 95.556 90 2 1 2204 2291 13830801 13830712 2.640000e-30 143.0
54 TraesCS2B01G094900 chr3B 94.624 93 3 1 2198 2288 753752355 753752447 2.640000e-30 143.0
55 TraesCS2B01G094900 chr3B 92.754 69 3 2 585 652 740695860 740695927 5.790000e-17 99.0
56 TraesCS2B01G094900 chr5D 92.857 98 4 2 2203 2298 49290837 49290741 3.410000e-29 139.0
57 TraesCS2B01G094900 chr5D 92.079 101 5 2 2191 2289 371800739 371800640 3.410000e-29 139.0
58 TraesCS2B01G094900 chr3D 92.784 97 4 2 2193 2286 310476002 310476098 1.230000e-28 137.0
59 TraesCS2B01G094900 chr3A 92.784 97 4 2 2201 2295 727583901 727583996 1.230000e-28 137.0
60 TraesCS2B01G094900 chr4A 88.991 109 8 3 2186 2291 603501351 603501458 5.710000e-27 132.0
61 TraesCS2B01G094900 chr1B 83.562 146 17 2 520 658 539455920 539455775 2.050000e-26 130.0
62 TraesCS2B01G094900 chr1B 83.562 146 17 2 520 658 540365481 540365626 2.050000e-26 130.0
63 TraesCS2B01G094900 chr1D 82.609 138 16 5 528 658 58940863 58940999 5.750000e-22 115.0
64 TraesCS2B01G094900 chr4B 83.019 106 13 4 347 450 424864239 424864341 9.690000e-15 91.6
65 TraesCS2B01G094900 chr6D 82.895 76 11 2 2035 2108 30746441 30746516 1.630000e-07 67.6
66 TraesCS2B01G094900 chr6D 97.143 35 0 1 2144 2178 448378058 448378025 9.830000e-05 58.4
67 TraesCS2B01G094900 chr4D 95.000 40 1 1 347 386 343063512 343063550 7.600000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G094900 chr2B 54785728 54788270 2542 True 4697.000000 4697 100.000000 1 2543 1 chr2B.!!$R1 2542
1 TraesCS2B01G094900 chr2B 122926383 122927190 807 False 717.000000 717 83.614000 792 1575 1 chr2B.!!$F2 783
2 TraesCS2B01G094900 chr2B 55209252 55210416 1164 True 510.000000 713 84.696500 792 1997 2 chr2B.!!$R7 1205
3 TraesCS2B01G094900 chr2B 54886225 54887924 1699 True 228.066667 433 90.291667 1146 2460 3 chr2B.!!$R6 1314
4 TraesCS2B01G094900 chr2D 33164635 33165491 856 True 848.000000 848 85.519000 761 1583 1 chr2D.!!$R1 822
5 TraesCS2B01G094900 chr2D 33314775 33315536 761 True 739.000000 739 84.566000 792 1555 1 chr2D.!!$R2 763
6 TraesCS2B01G094900 chr2D 32991381 32993014 1633 True 725.666667 1637 92.371667 747 2543 3 chr2D.!!$R4 1796
7 TraesCS2B01G094900 chr2D 79084882 79085685 803 False 701.000000 701 83.212000 799 1580 1 chr2D.!!$F1 781
8 TraesCS2B01G094900 chr2D 33048303 33049253 950 True 226.725000 453 92.873000 1183 1984 4 chr2D.!!$R6 801
9 TraesCS2B01G094900 chr2D 33015098 33015619 521 True 208.500000 213 92.260500 4 300 2 chr2D.!!$R5 296
10 TraesCS2B01G094900 chr2D 33371753 33373441 1688 True 208.500000 313 90.767000 1699 2102 2 chr2D.!!$R7 403
11 TraesCS2B01G094900 chr2A 36234947 36235746 799 True 931.000000 931 87.711000 764 1583 1 chr2A.!!$R2 819
12 TraesCS2B01G094900 chr2A 36189206 36190798 1592 True 649.333333 1114 88.906000 746 2543 3 chr2A.!!$R6 1797
13 TraesCS2B01G094900 chr2A 79342308 79344231 1923 False 438.000000 704 85.011000 792 2462 2 chr2A.!!$F3 1670
14 TraesCS2B01G094900 chr2A 36202319 36203264 945 True 246.600000 459 92.558500 746 1674 4 chr2A.!!$R7 928

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
720 947 0.03467 GAAGATTCCTGCAGGTGCCT 60.035 55.0 31.58 21.9 41.18 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2523 4045 2.717639 AATCCACATGGCACCTACTC 57.282 50.0 0.0 0.0 34.44 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 0.698818 GAGTCACCCACCCTGGAATT 59.301 55.000 0.00 0.00 40.96 2.17
92 93 1.153449 TCGGGCTTGTAATGCGAGG 60.153 57.895 0.00 0.00 37.98 4.63
95 96 0.392461 GGGCTTGTAATGCGAGGACA 60.392 55.000 0.00 0.00 37.98 4.02
97 98 1.405526 GGCTTGTAATGCGAGGACAGA 60.406 52.381 0.00 0.00 37.98 3.41
106 108 1.069296 TGCGAGGACAGAAAAATTGCG 60.069 47.619 0.00 0.00 0.00 4.85
125 127 1.517832 CCCCTGTGTCGAGGATGAC 59.482 63.158 0.00 0.00 39.37 3.06
143 145 5.537674 GGATGACCCAAAGCATGAGAATAAT 59.462 40.000 0.00 0.00 34.14 1.28
144 146 6.716628 GGATGACCCAAAGCATGAGAATAATA 59.283 38.462 0.00 0.00 34.14 0.98
152 379 9.727627 CCAAAGCATGAGAATAATAAAGTCTTC 57.272 33.333 0.00 0.00 0.00 2.87
183 410 1.595093 CCAAAACACGGATGGCTCCC 61.595 60.000 0.00 0.00 38.45 4.30
193 420 1.690219 GATGGCTCCCTGGTGTCGAT 61.690 60.000 0.00 0.00 0.00 3.59
208 435 0.392863 TCGATAACGAGGGACACCGA 60.393 55.000 0.00 0.00 43.81 4.69
213 440 0.249741 AACGAGGGACACCGAAACAG 60.250 55.000 0.00 0.00 43.47 3.16
228 455 3.056107 CGAAACAGGATAACTCCACCTCA 60.056 47.826 0.00 0.00 44.79 3.86
230 457 2.902608 ACAGGATAACTCCACCTCACA 58.097 47.619 0.00 0.00 44.79 3.58
233 460 3.007940 CAGGATAACTCCACCTCACACAA 59.992 47.826 0.00 0.00 44.79 3.33
247 474 8.303156 CCACCTCACACAATTATGAAACAATTA 58.697 33.333 0.00 0.00 0.00 1.40
267 494 9.809096 ACAATTAAATAACAACACATCACACAA 57.191 25.926 0.00 0.00 0.00 3.33
292 519 4.275810 AGCTACACAAGGCATGATGAAAT 58.724 39.130 0.00 0.00 0.00 2.17
293 520 5.439721 AGCTACACAAGGCATGATGAAATA 58.560 37.500 0.00 0.00 0.00 1.40
294 521 6.066690 AGCTACACAAGGCATGATGAAATAT 58.933 36.000 0.00 0.00 0.00 1.28
295 522 7.226441 AGCTACACAAGGCATGATGAAATATA 58.774 34.615 0.00 0.00 0.00 0.86
296 523 7.173907 AGCTACACAAGGCATGATGAAATATAC 59.826 37.037 0.00 0.00 0.00 1.47
297 524 7.173907 GCTACACAAGGCATGATGAAATATACT 59.826 37.037 0.00 0.00 0.00 2.12
299 526 8.978874 ACACAAGGCATGATGAAATATACTAA 57.021 30.769 0.00 0.00 0.00 2.24
300 527 9.407380 ACACAAGGCATGATGAAATATACTAAA 57.593 29.630 0.00 0.00 0.00 1.85
326 553 9.868277 AAGTTTAAGTAGTTGAGATGAGATCAG 57.132 33.333 0.00 0.00 0.00 2.90
327 554 9.249053 AGTTTAAGTAGTTGAGATGAGATCAGA 57.751 33.333 0.00 0.00 0.00 3.27
328 555 9.296400 GTTTAAGTAGTTGAGATGAGATCAGAC 57.704 37.037 0.00 0.00 0.00 3.51
329 556 8.815565 TTAAGTAGTTGAGATGAGATCAGACT 57.184 34.615 0.00 0.00 0.00 3.24
330 557 9.907229 TTAAGTAGTTGAGATGAGATCAGACTA 57.093 33.333 0.00 0.00 0.00 2.59
331 558 8.815565 AAGTAGTTGAGATGAGATCAGACTAA 57.184 34.615 0.00 0.00 29.95 2.24
332 559 8.220755 AGTAGTTGAGATGAGATCAGACTAAC 57.779 38.462 0.00 0.00 29.95 2.34
333 560 7.831690 AGTAGTTGAGATGAGATCAGACTAACA 59.168 37.037 0.00 0.00 29.95 2.41
334 561 7.658525 AGTTGAGATGAGATCAGACTAACAT 57.341 36.000 0.00 0.00 0.00 2.71
335 562 8.759481 AGTTGAGATGAGATCAGACTAACATA 57.241 34.615 0.00 0.00 0.00 2.29
336 563 8.849168 AGTTGAGATGAGATCAGACTAACATAG 58.151 37.037 0.00 0.00 0.00 2.23
337 564 8.629158 GTTGAGATGAGATCAGACTAACATAGT 58.371 37.037 0.00 0.00 42.86 2.12
338 565 8.164058 TGAGATGAGATCAGACTAACATAGTG 57.836 38.462 0.00 0.00 39.59 2.74
339 566 7.777440 TGAGATGAGATCAGACTAACATAGTGT 59.223 37.037 0.00 0.00 39.59 3.55
341 568 6.456795 TGAGATCAGACTAACATAGTGTGG 57.543 41.667 12.87 0.00 46.60 4.17
342 569 6.187682 TGAGATCAGACTAACATAGTGTGGA 58.812 40.000 12.87 3.29 46.60 4.02
343 570 6.836007 TGAGATCAGACTAACATAGTGTGGAT 59.164 38.462 12.87 6.93 46.60 3.41
344 571 7.998964 TGAGATCAGACTAACATAGTGTGGATA 59.001 37.037 12.87 0.00 46.60 2.59
345 572 8.402798 AGATCAGACTAACATAGTGTGGATAG 57.597 38.462 12.87 0.00 46.60 2.08
346 573 6.392625 TCAGACTAACATAGTGTGGATAGC 57.607 41.667 12.87 0.00 46.60 2.97
347 574 5.891551 TCAGACTAACATAGTGTGGATAGCA 59.108 40.000 12.87 0.00 46.60 3.49
348 575 6.039829 TCAGACTAACATAGTGTGGATAGCAG 59.960 42.308 12.87 0.00 46.60 4.24
349 576 5.894393 AGACTAACATAGTGTGGATAGCAGT 59.106 40.000 0.00 0.00 39.59 4.40
350 577 7.013369 CAGACTAACATAGTGTGGATAGCAGTA 59.987 40.741 6.75 0.00 43.92 2.74
351 578 7.560262 AGACTAACATAGTGTGGATAGCAGTAA 59.440 37.037 0.00 0.00 39.59 2.24
352 579 8.074613 ACTAACATAGTGTGGATAGCAGTAAA 57.925 34.615 0.00 0.00 37.69 2.01
353 580 8.705594 ACTAACATAGTGTGGATAGCAGTAAAT 58.294 33.333 0.00 0.00 37.69 1.40
354 581 7.792374 AACATAGTGTGGATAGCAGTAAATG 57.208 36.000 0.00 0.00 0.00 2.32
368 595 3.869246 CAGTAAATGCTACAAGTACGGGG 59.131 47.826 0.00 0.00 0.00 5.73
369 596 3.516700 AGTAAATGCTACAAGTACGGGGT 59.483 43.478 0.00 0.00 0.00 4.95
370 597 3.428413 AAATGCTACAAGTACGGGGTT 57.572 42.857 0.00 0.00 0.00 4.11
371 598 4.556592 AAATGCTACAAGTACGGGGTTA 57.443 40.909 0.00 0.00 0.00 2.85
372 599 4.765813 AATGCTACAAGTACGGGGTTAT 57.234 40.909 0.00 0.00 0.00 1.89
373 600 5.874897 AATGCTACAAGTACGGGGTTATA 57.125 39.130 0.00 0.00 0.00 0.98
374 601 4.654091 TGCTACAAGTACGGGGTTATAC 57.346 45.455 0.00 0.00 0.00 1.47
375 602 3.066621 TGCTACAAGTACGGGGTTATACG 59.933 47.826 0.00 0.00 0.00 3.06
376 603 3.550842 GCTACAAGTACGGGGTTATACGG 60.551 52.174 0.00 0.00 0.00 4.02
377 604 1.756538 ACAAGTACGGGGTTATACGGG 59.243 52.381 0.00 0.00 0.00 5.28
378 605 1.069049 CAAGTACGGGGTTATACGGGG 59.931 57.143 0.00 0.00 0.00 5.73
379 606 0.261696 AGTACGGGGTTATACGGGGT 59.738 55.000 0.00 0.00 0.00 4.95
380 607 1.119684 GTACGGGGTTATACGGGGTT 58.880 55.000 0.00 0.00 0.00 4.11
381 608 1.484653 GTACGGGGTTATACGGGGTTT 59.515 52.381 0.00 0.00 0.00 3.27
382 609 0.991146 ACGGGGTTATACGGGGTTTT 59.009 50.000 0.00 0.00 0.00 2.43
383 610 2.192263 ACGGGGTTATACGGGGTTTTA 58.808 47.619 0.00 0.00 0.00 1.52
384 611 2.093181 ACGGGGTTATACGGGGTTTTAC 60.093 50.000 0.00 0.00 0.00 2.01
385 612 2.093235 CGGGGTTATACGGGGTTTTACA 60.093 50.000 0.00 0.00 0.00 2.41
386 613 3.544684 GGGGTTATACGGGGTTTTACAG 58.455 50.000 0.00 0.00 0.00 2.74
387 614 3.544684 GGGTTATACGGGGTTTTACAGG 58.455 50.000 0.00 0.00 0.00 4.00
388 615 3.054434 GGGTTATACGGGGTTTTACAGGT 60.054 47.826 0.00 0.00 0.00 4.00
389 616 4.567537 GGGTTATACGGGGTTTTACAGGTT 60.568 45.833 0.00 0.00 0.00 3.50
390 617 4.395854 GGTTATACGGGGTTTTACAGGTTG 59.604 45.833 0.00 0.00 0.00 3.77
391 618 2.565046 TACGGGGTTTTACAGGTTGG 57.435 50.000 0.00 0.00 0.00 3.77
392 619 0.824595 ACGGGGTTTTACAGGTTGGC 60.825 55.000 0.00 0.00 0.00 4.52
393 620 0.538746 CGGGGTTTTACAGGTTGGCT 60.539 55.000 0.00 0.00 0.00 4.75
394 621 1.271488 CGGGGTTTTACAGGTTGGCTA 60.271 52.381 0.00 0.00 0.00 3.93
395 622 2.443416 GGGGTTTTACAGGTTGGCTAG 58.557 52.381 0.00 0.00 0.00 3.42
396 623 2.040679 GGGGTTTTACAGGTTGGCTAGA 59.959 50.000 0.00 0.00 0.00 2.43
397 624 3.499021 GGGGTTTTACAGGTTGGCTAGAA 60.499 47.826 0.00 0.00 0.00 2.10
398 625 4.146564 GGGTTTTACAGGTTGGCTAGAAA 58.853 43.478 0.00 0.00 0.00 2.52
399 626 4.585581 GGGTTTTACAGGTTGGCTAGAAAA 59.414 41.667 0.00 0.00 0.00 2.29
400 627 5.245301 GGGTTTTACAGGTTGGCTAGAAAAT 59.755 40.000 0.00 0.00 0.00 1.82
401 628 6.434965 GGGTTTTACAGGTTGGCTAGAAAATA 59.565 38.462 0.00 0.00 0.00 1.40
402 629 7.039574 GGGTTTTACAGGTTGGCTAGAAAATAA 60.040 37.037 0.00 0.00 0.00 1.40
403 630 8.528643 GGTTTTACAGGTTGGCTAGAAAATAAT 58.471 33.333 0.00 0.00 0.00 1.28
404 631 9.353999 GTTTTACAGGTTGGCTAGAAAATAATG 57.646 33.333 0.00 0.00 0.00 1.90
405 632 5.582689 ACAGGTTGGCTAGAAAATAATGC 57.417 39.130 0.00 0.00 0.00 3.56
406 633 4.096382 ACAGGTTGGCTAGAAAATAATGCG 59.904 41.667 0.00 0.00 0.00 4.73
407 634 4.335315 CAGGTTGGCTAGAAAATAATGCGA 59.665 41.667 0.00 0.00 0.00 5.10
408 635 4.335594 AGGTTGGCTAGAAAATAATGCGAC 59.664 41.667 0.00 0.00 0.00 5.19
409 636 4.271687 GTTGGCTAGAAAATAATGCGACG 58.728 43.478 0.00 0.00 0.00 5.12
410 637 3.527533 TGGCTAGAAAATAATGCGACGT 58.472 40.909 0.00 0.00 0.00 4.34
411 638 3.308595 TGGCTAGAAAATAATGCGACGTG 59.691 43.478 0.00 0.00 0.00 4.49
412 639 3.554324 GGCTAGAAAATAATGCGACGTGA 59.446 43.478 0.00 0.00 0.00 4.35
413 640 4.033587 GGCTAGAAAATAATGCGACGTGAA 59.966 41.667 0.00 0.00 0.00 3.18
414 641 5.446741 GGCTAGAAAATAATGCGACGTGAAA 60.447 40.000 0.00 0.00 0.00 2.69
415 642 5.448162 GCTAGAAAATAATGCGACGTGAAAC 59.552 40.000 0.00 0.00 0.00 2.78
416 643 5.607119 AGAAAATAATGCGACGTGAAACT 57.393 34.783 0.00 0.00 31.75 2.66
417 644 5.997385 AGAAAATAATGCGACGTGAAACTT 58.003 33.333 0.00 0.00 31.75 2.66
418 645 6.435428 AGAAAATAATGCGACGTGAAACTTT 58.565 32.000 0.00 0.00 31.75 2.66
419 646 6.359617 AGAAAATAATGCGACGTGAAACTTTG 59.640 34.615 0.00 0.00 31.75 2.77
420 647 4.742438 ATAATGCGACGTGAAACTTTGT 57.258 36.364 0.00 0.00 31.75 2.83
421 648 2.383298 ATGCGACGTGAAACTTTGTG 57.617 45.000 0.00 0.00 31.75 3.33
422 649 1.360820 TGCGACGTGAAACTTTGTGA 58.639 45.000 0.00 0.00 31.75 3.58
423 650 1.937223 TGCGACGTGAAACTTTGTGAT 59.063 42.857 0.00 0.00 31.75 3.06
424 651 2.286125 TGCGACGTGAAACTTTGTGATG 60.286 45.455 0.00 0.00 31.75 3.07
425 652 2.033236 GCGACGTGAAACTTTGTGATGA 60.033 45.455 0.00 0.00 31.75 2.92
426 653 3.787826 CGACGTGAAACTTTGTGATGAG 58.212 45.455 0.00 0.00 31.75 2.90
427 654 3.489416 CGACGTGAAACTTTGTGATGAGA 59.511 43.478 0.00 0.00 31.75 3.27
428 655 4.150627 CGACGTGAAACTTTGTGATGAGAT 59.849 41.667 0.00 0.00 31.75 2.75
429 656 5.333339 CGACGTGAAACTTTGTGATGAGATT 60.333 40.000 0.00 0.00 31.75 2.40
430 657 6.377327 ACGTGAAACTTTGTGATGAGATTT 57.623 33.333 0.00 0.00 31.75 2.17
431 658 6.430451 ACGTGAAACTTTGTGATGAGATTTC 58.570 36.000 0.00 0.00 31.75 2.17
432 659 6.038161 ACGTGAAACTTTGTGATGAGATTTCA 59.962 34.615 0.00 0.00 33.64 2.69
433 660 6.576313 CGTGAAACTTTGTGATGAGATTTCAG 59.424 38.462 0.00 0.00 35.79 3.02
434 661 7.420800 GTGAAACTTTGTGATGAGATTTCAGT 58.579 34.615 0.00 0.00 35.79 3.41
435 662 7.917505 GTGAAACTTTGTGATGAGATTTCAGTT 59.082 33.333 0.00 0.00 35.79 3.16
436 663 7.916977 TGAAACTTTGTGATGAGATTTCAGTTG 59.083 33.333 0.00 0.00 36.61 3.16
437 664 5.766222 ACTTTGTGATGAGATTTCAGTTGC 58.234 37.500 0.00 0.00 36.61 4.17
438 665 4.408993 TTGTGATGAGATTTCAGTTGCG 57.591 40.909 0.00 0.00 36.61 4.85
439 666 3.663025 TGTGATGAGATTTCAGTTGCGA 58.337 40.909 0.00 0.00 36.61 5.10
440 667 4.064388 TGTGATGAGATTTCAGTTGCGAA 58.936 39.130 0.00 0.00 36.61 4.70
441 668 4.514816 TGTGATGAGATTTCAGTTGCGAAA 59.485 37.500 0.00 0.00 39.13 3.46
442 669 5.084722 GTGATGAGATTTCAGTTGCGAAAG 58.915 41.667 0.00 0.00 38.24 2.62
462 689 3.683518 GCCCCCACCCCCTGAAAT 61.684 66.667 0.00 0.00 0.00 2.17
463 690 3.200565 CCCCCACCCCCTGAAATT 58.799 61.111 0.00 0.00 0.00 1.82
464 691 1.001631 CCCCCACCCCCTGAAATTC 59.998 63.158 0.00 0.00 0.00 2.17
465 692 1.518431 CCCCCACCCCCTGAAATTCT 61.518 60.000 0.00 0.00 0.00 2.40
466 693 0.324645 CCCCACCCCCTGAAATTCTG 60.325 60.000 0.00 0.00 0.00 3.02
467 694 0.704076 CCCACCCCCTGAAATTCTGA 59.296 55.000 1.26 0.00 0.00 3.27
468 695 1.341383 CCCACCCCCTGAAATTCTGAG 60.341 57.143 1.26 0.00 0.00 3.35
469 696 1.341383 CCACCCCCTGAAATTCTGAGG 60.341 57.143 1.26 4.76 0.00 3.86
470 697 1.002857 ACCCCCTGAAATTCTGAGGG 58.997 55.000 15.95 15.95 45.57 4.30
474 701 2.725221 CCTGAAATTCTGAGGGAGGG 57.275 55.000 1.26 0.00 0.00 4.30
475 702 1.213926 CCTGAAATTCTGAGGGAGGGG 59.786 57.143 1.26 0.00 0.00 4.79
476 703 1.213926 CTGAAATTCTGAGGGAGGGGG 59.786 57.143 0.00 0.00 0.00 5.40
492 719 2.808906 GGGGGAGCAATGTTTAGAGT 57.191 50.000 0.00 0.00 0.00 3.24
493 720 3.926058 GGGGGAGCAATGTTTAGAGTA 57.074 47.619 0.00 0.00 0.00 2.59
494 721 4.439253 GGGGGAGCAATGTTTAGAGTAT 57.561 45.455 0.00 0.00 0.00 2.12
495 722 5.562298 GGGGGAGCAATGTTTAGAGTATA 57.438 43.478 0.00 0.00 0.00 1.47
496 723 5.937111 GGGGGAGCAATGTTTAGAGTATAA 58.063 41.667 0.00 0.00 0.00 0.98
497 724 6.543735 GGGGGAGCAATGTTTAGAGTATAAT 58.456 40.000 0.00 0.00 0.00 1.28
498 725 7.004691 GGGGGAGCAATGTTTAGAGTATAATT 58.995 38.462 0.00 0.00 0.00 1.40
499 726 7.040409 GGGGGAGCAATGTTTAGAGTATAATTG 60.040 40.741 0.00 0.00 0.00 2.32
500 727 7.040409 GGGGAGCAATGTTTAGAGTATAATTGG 60.040 40.741 0.00 0.00 0.00 3.16
501 728 7.363431 GGAGCAATGTTTAGAGTATAATTGGC 58.637 38.462 0.00 0.00 0.00 4.52
502 729 7.229506 GGAGCAATGTTTAGAGTATAATTGGCT 59.770 37.037 0.00 0.00 0.00 4.75
503 730 8.525290 AGCAATGTTTAGAGTATAATTGGCTT 57.475 30.769 0.00 0.00 0.00 4.35
504 731 8.408601 AGCAATGTTTAGAGTATAATTGGCTTG 58.591 33.333 0.00 0.00 0.00 4.01
505 732 8.405531 GCAATGTTTAGAGTATAATTGGCTTGA 58.594 33.333 0.00 0.00 0.00 3.02
508 735 7.930217 TGTTTAGAGTATAATTGGCTTGATGC 58.070 34.615 0.00 0.00 41.94 3.91
519 746 1.636988 GCTTGATGCCAACATTCAGC 58.363 50.000 0.00 0.00 36.35 4.26
520 747 1.067425 GCTTGATGCCAACATTCAGCA 60.067 47.619 0.00 0.00 39.63 4.41
521 748 2.610976 GCTTGATGCCAACATTCAGCAA 60.611 45.455 0.00 0.00 39.63 3.91
522 749 3.655486 CTTGATGCCAACATTCAGCAAA 58.345 40.909 0.00 0.00 38.00 3.68
523 750 3.747854 TGATGCCAACATTCAGCAAAA 57.252 38.095 0.00 0.00 40.46 2.44
524 751 4.274602 TGATGCCAACATTCAGCAAAAT 57.725 36.364 0.00 0.00 40.46 1.82
525 752 4.643463 TGATGCCAACATTCAGCAAAATT 58.357 34.783 0.00 0.00 40.46 1.82
526 753 5.064558 TGATGCCAACATTCAGCAAAATTT 58.935 33.333 0.00 0.00 40.46 1.82
527 754 4.815040 TGCCAACATTCAGCAAAATTTG 57.185 36.364 0.57 0.57 32.56 2.32
528 755 3.564644 TGCCAACATTCAGCAAAATTTGG 59.435 39.130 7.89 14.01 34.01 3.28
529 756 3.609879 GCCAACATTCAGCAAAATTTGGC 60.610 43.478 9.71 9.71 40.83 4.52
530 757 3.564644 CCAACATTCAGCAAAATTTGGCA 59.435 39.130 19.63 0.00 0.00 4.92
531 758 4.036498 CCAACATTCAGCAAAATTTGGCAA 59.964 37.500 19.63 6.55 0.00 4.52
532 759 5.450137 CCAACATTCAGCAAAATTTGGCAAA 60.450 36.000 19.63 16.01 0.00 3.68
533 760 5.831702 ACATTCAGCAAAATTTGGCAAAA 57.168 30.435 19.63 12.68 0.00 2.44
534 761 6.394025 ACATTCAGCAAAATTTGGCAAAAT 57.606 29.167 19.63 14.24 37.61 1.82
535 762 6.807789 ACATTCAGCAAAATTTGGCAAAATT 58.192 28.000 19.63 12.31 45.81 1.82
536 763 7.938715 ACATTCAGCAAAATTTGGCAAAATTA 58.061 26.923 19.63 0.00 43.63 1.40
537 764 8.411683 ACATTCAGCAAAATTTGGCAAAATTAA 58.588 25.926 19.63 6.10 43.63 1.40
538 765 9.245962 CATTCAGCAAAATTTGGCAAAATTAAA 57.754 25.926 19.63 5.98 43.63 1.52
539 766 9.813446 ATTCAGCAAAATTTGGCAAAATTAAAA 57.187 22.222 19.63 6.28 43.63 1.52
540 767 8.853469 TCAGCAAAATTTGGCAAAATTAAAAG 57.147 26.923 19.63 7.28 43.63 2.27
541 768 8.465201 TCAGCAAAATTTGGCAAAATTAAAAGT 58.535 25.926 19.63 0.00 43.63 2.66
542 769 9.085250 CAGCAAAATTTGGCAAAATTAAAAGTT 57.915 25.926 19.63 0.90 43.63 2.66
543 770 9.085250 AGCAAAATTTGGCAAAATTAAAAGTTG 57.915 25.926 19.63 12.74 43.63 3.16
544 771 7.845137 GCAAAATTTGGCAAAATTAAAAGTTGC 59.155 29.630 21.26 21.26 43.63 4.17
562 789 9.920133 AAAAGTTGCCAAAATTTAACAATTGTT 57.080 22.222 25.99 25.99 41.73 2.83
563 790 9.920133 AAAGTTGCCAAAATTTAACAATTGTTT 57.080 22.222 27.66 8.62 39.31 2.83
564 791 8.908172 AGTTGCCAAAATTTAACAATTGTTTG 57.092 26.923 27.66 17.98 39.31 2.93
566 793 8.582096 GTTGCCAAAATTTAACAATTGTTTGTG 58.418 29.630 27.66 15.01 45.30 3.33
567 794 8.044060 TGCCAAAATTTAACAATTGTTTGTGA 57.956 26.923 27.66 8.25 45.30 3.58
568 795 8.180267 TGCCAAAATTTAACAATTGTTTGTGAG 58.820 29.630 27.66 12.41 45.30 3.51
569 796 8.394121 GCCAAAATTTAACAATTGTTTGTGAGA 58.606 29.630 27.66 7.12 45.30 3.27
575 802 9.814899 ATTTAACAATTGTTTGTGAGATTGACA 57.185 25.926 27.66 3.42 45.30 3.58
576 803 9.645059 TTTAACAATTGTTTGTGAGATTGACAA 57.355 25.926 27.66 9.32 45.30 3.18
577 804 9.645059 TTAACAATTGTTTGTGAGATTGACAAA 57.355 25.926 27.66 8.91 45.30 2.83
578 805 8.545229 AACAATTGTTTGTGAGATTGACAAAA 57.455 26.923 18.13 0.00 45.30 2.44
579 806 8.545229 ACAATTGTTTGTGAGATTGACAAAAA 57.455 26.923 4.92 0.00 44.36 1.94
602 829 8.601845 AAAAATTCAACCAATTACTAGCCAAC 57.398 30.769 0.00 0.00 33.16 3.77
603 830 6.909550 AATTCAACCAATTACTAGCCAACA 57.090 33.333 0.00 0.00 32.48 3.33
604 831 7.480760 AATTCAACCAATTACTAGCCAACAT 57.519 32.000 0.00 0.00 32.48 2.71
605 832 6.909550 TTCAACCAATTACTAGCCAACATT 57.090 33.333 0.00 0.00 0.00 2.71
606 833 6.909550 TCAACCAATTACTAGCCAACATTT 57.090 33.333 0.00 0.00 0.00 2.32
607 834 6.686630 TCAACCAATTACTAGCCAACATTTG 58.313 36.000 0.00 0.00 0.00 2.32
608 835 6.491745 TCAACCAATTACTAGCCAACATTTGA 59.508 34.615 0.00 0.00 0.00 2.69
609 836 6.267496 ACCAATTACTAGCCAACATTTGAC 57.733 37.500 0.00 0.00 0.00 3.18
610 837 5.772672 ACCAATTACTAGCCAACATTTGACA 59.227 36.000 0.00 0.00 0.00 3.58
611 838 6.437162 ACCAATTACTAGCCAACATTTGACAT 59.563 34.615 0.00 0.00 0.00 3.06
612 839 7.039082 ACCAATTACTAGCCAACATTTGACATT 60.039 33.333 0.00 0.00 0.00 2.71
613 840 7.818930 CCAATTACTAGCCAACATTTGACATTT 59.181 33.333 0.00 0.00 0.00 2.32
614 841 8.649841 CAATTACTAGCCAACATTTGACATTTG 58.350 33.333 0.00 0.00 0.00 2.32
615 842 4.559153 ACTAGCCAACATTTGACATTTGC 58.441 39.130 0.00 0.00 0.00 3.68
616 843 2.769893 AGCCAACATTTGACATTTGCC 58.230 42.857 0.00 0.00 0.00 4.52
617 844 2.104451 AGCCAACATTTGACATTTGCCA 59.896 40.909 0.00 0.00 0.00 4.92
618 845 2.877168 GCCAACATTTGACATTTGCCAA 59.123 40.909 0.00 0.00 0.00 4.52
619 846 3.314635 GCCAACATTTGACATTTGCCAAA 59.685 39.130 0.00 0.00 36.80 3.28
620 847 4.023021 GCCAACATTTGACATTTGCCAAAT 60.023 37.500 0.00 0.00 41.93 2.32
621 848 5.180868 GCCAACATTTGACATTTGCCAAATA 59.819 36.000 1.66 0.00 39.98 1.40
622 849 6.127952 GCCAACATTTGACATTTGCCAAATAT 60.128 34.615 1.66 0.00 39.98 1.28
623 850 7.575343 GCCAACATTTGACATTTGCCAAATATT 60.575 33.333 1.66 0.00 39.98 1.28
624 851 8.944029 CCAACATTTGACATTTGCCAAATATTA 58.056 29.630 1.66 0.00 39.98 0.98
625 852 9.976255 CAACATTTGACATTTGCCAAATATTAG 57.024 29.630 1.66 0.00 39.98 1.73
626 853 8.200364 ACATTTGACATTTGCCAAATATTAGC 57.800 30.769 1.66 3.92 39.98 3.09
627 854 7.823310 ACATTTGACATTTGCCAAATATTAGCA 59.177 29.630 1.66 8.59 39.98 3.49
628 855 8.832521 CATTTGACATTTGCCAAATATTAGCAT 58.167 29.630 12.43 0.32 39.98 3.79
629 856 8.789825 TTTGACATTTGCCAAATATTAGCATT 57.210 26.923 12.43 3.32 36.20 3.56
630 857 7.773864 TGACATTTGCCAAATATTAGCATTG 57.226 32.000 12.43 14.11 36.20 2.82
631 858 6.258287 TGACATTTGCCAAATATTAGCATTGC 59.742 34.615 12.43 0.00 36.20 3.56
632 859 5.528320 ACATTTGCCAAATATTAGCATTGCC 59.472 36.000 12.43 0.00 36.20 4.52
633 860 4.750021 TTGCCAAATATTAGCATTGCCA 57.250 36.364 12.43 0.00 36.20 4.92
634 861 4.750021 TGCCAAATATTAGCATTGCCAA 57.250 36.364 4.70 0.00 0.00 4.52
635 862 4.440880 TGCCAAATATTAGCATTGCCAAC 58.559 39.130 4.70 0.00 0.00 3.77
636 863 4.161942 TGCCAAATATTAGCATTGCCAACT 59.838 37.500 4.70 0.00 0.00 3.16
637 864 5.118286 GCCAAATATTAGCATTGCCAACTT 58.882 37.500 4.70 0.00 0.00 2.66
638 865 5.585844 GCCAAATATTAGCATTGCCAACTTT 59.414 36.000 4.70 0.00 0.00 2.66
639 866 6.093909 GCCAAATATTAGCATTGCCAACTTTT 59.906 34.615 4.70 0.00 0.00 2.27
640 867 7.465989 CCAAATATTAGCATTGCCAACTTTTG 58.534 34.615 4.70 11.00 0.00 2.44
650 877 2.064573 CCAACTTTTGGCATCGAACC 57.935 50.000 0.00 0.00 45.17 3.62
651 878 1.339610 CCAACTTTTGGCATCGAACCA 59.660 47.619 6.45 6.45 45.17 3.67
652 879 2.223923 CCAACTTTTGGCATCGAACCAA 60.224 45.455 16.88 16.88 45.17 3.67
653 880 3.554752 CCAACTTTTGGCATCGAACCAAT 60.555 43.478 20.29 6.70 46.25 3.16
654 881 4.057432 CAACTTTTGGCATCGAACCAATT 58.943 39.130 20.29 11.47 46.25 2.32
655 882 5.226396 CAACTTTTGGCATCGAACCAATTA 58.774 37.500 20.29 12.45 46.25 1.40
656 883 5.659440 ACTTTTGGCATCGAACCAATTAT 57.341 34.783 20.29 8.83 46.25 1.28
657 884 5.410067 ACTTTTGGCATCGAACCAATTATG 58.590 37.500 20.29 12.63 46.25 1.90
658 885 5.047377 ACTTTTGGCATCGAACCAATTATGT 60.047 36.000 20.29 13.12 46.25 2.29
659 886 5.398603 TTTGGCATCGAACCAATTATGTT 57.601 34.783 20.29 0.00 46.25 2.71
660 887 5.398603 TTGGCATCGAACCAATTATGTTT 57.601 34.783 16.88 0.00 42.23 2.83
661 888 6.516739 TTGGCATCGAACCAATTATGTTTA 57.483 33.333 16.88 0.00 42.23 2.01
662 889 5.885881 TGGCATCGAACCAATTATGTTTAC 58.114 37.500 8.01 0.00 33.12 2.01
663 890 5.650266 TGGCATCGAACCAATTATGTTTACT 59.350 36.000 8.01 0.00 33.12 2.24
664 891 6.151985 TGGCATCGAACCAATTATGTTTACTT 59.848 34.615 8.01 0.00 33.12 2.24
665 892 7.033185 GGCATCGAACCAATTATGTTTACTTT 58.967 34.615 3.08 0.00 0.00 2.66
666 893 7.544217 GGCATCGAACCAATTATGTTTACTTTT 59.456 33.333 3.08 0.00 0.00 2.27
667 894 8.921670 GCATCGAACCAATTATGTTTACTTTTT 58.078 29.630 0.00 0.00 0.00 1.94
705 932 9.841295 AGTTATGTTTACTAGTTTGTTGGAAGA 57.159 29.630 0.00 0.00 0.00 2.87
718 945 2.486796 GGAAGATTCCTGCAGGTGC 58.513 57.895 31.58 20.82 44.11 5.01
719 946 1.034292 GGAAGATTCCTGCAGGTGCC 61.034 60.000 31.58 17.27 44.11 5.01
720 947 0.034670 GAAGATTCCTGCAGGTGCCT 60.035 55.000 31.58 21.90 41.18 4.75
721 948 0.323178 AAGATTCCTGCAGGTGCCTG 60.323 55.000 31.58 13.59 46.15 4.85
722 949 1.001641 GATTCCTGCAGGTGCCTGT 60.002 57.895 31.58 12.54 45.24 4.00
723 950 0.253044 GATTCCTGCAGGTGCCTGTA 59.747 55.000 31.58 13.60 45.24 2.74
724 951 0.035056 ATTCCTGCAGGTGCCTGTAC 60.035 55.000 31.58 4.75 45.24 2.90
725 952 2.434884 CCTGCAGGTGCCTGTACG 60.435 66.667 25.53 5.65 45.24 3.67
726 953 2.656646 CTGCAGGTGCCTGTACGA 59.343 61.111 18.32 1.70 45.24 3.43
727 954 1.219124 CTGCAGGTGCCTGTACGAT 59.781 57.895 18.32 0.00 45.24 3.73
728 955 0.391661 CTGCAGGTGCCTGTACGATT 60.392 55.000 18.32 0.00 45.24 3.34
729 956 0.391130 TGCAGGTGCCTGTACGATTC 60.391 55.000 18.32 2.12 45.24 2.52
730 957 1.090052 GCAGGTGCCTGTACGATTCC 61.090 60.000 18.32 0.00 45.24 3.01
731 958 0.537188 CAGGTGCCTGTACGATTCCT 59.463 55.000 9.96 0.00 39.10 3.36
732 959 0.537188 AGGTGCCTGTACGATTCCTG 59.463 55.000 0.00 0.00 0.00 3.86
733 960 1.090052 GGTGCCTGTACGATTCCTGC 61.090 60.000 0.00 0.00 0.00 4.85
734 961 0.391130 GTGCCTGTACGATTCCTGCA 60.391 55.000 0.00 0.00 0.00 4.41
735 962 0.541392 TGCCTGTACGATTCCTGCAT 59.459 50.000 0.00 0.00 0.00 3.96
736 963 1.065491 TGCCTGTACGATTCCTGCATT 60.065 47.619 0.00 0.00 0.00 3.56
737 964 2.017049 GCCTGTACGATTCCTGCATTT 58.983 47.619 0.00 0.00 0.00 2.32
738 965 2.423538 GCCTGTACGATTCCTGCATTTT 59.576 45.455 0.00 0.00 0.00 1.82
739 966 3.487544 GCCTGTACGATTCCTGCATTTTC 60.488 47.826 0.00 0.00 0.00 2.29
740 967 3.242413 CCTGTACGATTCCTGCATTTTCG 60.242 47.826 0.00 6.86 35.99 3.46
741 968 2.675844 TGTACGATTCCTGCATTTTCGG 59.324 45.455 11.48 0.00 34.28 4.30
742 969 1.821216 ACGATTCCTGCATTTTCGGT 58.179 45.000 11.48 0.00 34.28 4.69
743 970 1.468520 ACGATTCCTGCATTTTCGGTG 59.531 47.619 11.48 0.00 34.28 4.94
744 971 1.468520 CGATTCCTGCATTTTCGGTGT 59.531 47.619 0.00 0.00 0.00 4.16
787 1014 1.207089 TGTGCAGGAAGAGAATACCGG 59.793 52.381 0.00 0.00 0.00 5.28
788 1015 1.480954 GTGCAGGAAGAGAATACCGGA 59.519 52.381 9.46 0.00 0.00 5.14
789 1016 2.093658 GTGCAGGAAGAGAATACCGGAA 60.094 50.000 9.46 0.00 0.00 4.30
790 1017 2.569853 TGCAGGAAGAGAATACCGGAAA 59.430 45.455 9.46 0.00 0.00 3.13
1142 1410 3.434319 GTGGGCGGTGCACATCTG 61.434 66.667 20.43 6.22 46.32 2.90
1587 2105 3.242413 GCGATTGCGATTGTGTTATGAGT 60.242 43.478 3.01 0.00 40.82 3.41
1590 2108 4.857871 TTGCGATTGTGTTATGAGTAGC 57.142 40.909 0.00 0.00 0.00 3.58
1682 2505 2.194326 GCCCAAGATGCCTCTCCC 59.806 66.667 0.00 0.00 0.00 4.30
1721 2547 2.511600 GGCGGATCCTGTTCGTGG 60.512 66.667 10.75 0.00 0.00 4.94
1785 2617 1.593196 CGCCTGTTCTTGTTCAAGGA 58.407 50.000 11.82 1.24 0.00 3.36
1897 2735 3.680196 TACGGGAGGCTGACCCCT 61.680 66.667 8.04 0.00 44.09 4.79
2034 2942 6.071221 ACCGGTAATCTTTTGGGGTTTATTTC 60.071 38.462 4.49 0.00 0.00 2.17
2207 3532 4.690748 TGCAACTGCTGTAATCTTGTACTC 59.309 41.667 2.95 0.00 42.66 2.59
2208 3533 4.093556 GCAACTGCTGTAATCTTGTACTCC 59.906 45.833 0.00 0.00 38.21 3.85
2209 3534 4.473477 ACTGCTGTAATCTTGTACTCCC 57.527 45.455 0.00 0.00 0.00 4.30
2210 3535 4.097418 ACTGCTGTAATCTTGTACTCCCT 58.903 43.478 0.00 0.00 0.00 4.20
2211 3536 4.160626 ACTGCTGTAATCTTGTACTCCCTC 59.839 45.833 0.00 0.00 0.00 4.30
2212 3537 3.451178 TGCTGTAATCTTGTACTCCCTCC 59.549 47.826 0.00 0.00 0.00 4.30
2213 3538 3.491104 GCTGTAATCTTGTACTCCCTCCG 60.491 52.174 0.00 0.00 0.00 4.63
2215 3540 4.858850 TGTAATCTTGTACTCCCTCCGTA 58.141 43.478 0.00 0.00 0.00 4.02
2217 3542 5.716228 TGTAATCTTGTACTCCCTCCGTAAA 59.284 40.000 0.00 0.00 0.00 2.01
2218 3543 4.732672 ATCTTGTACTCCCTCCGTAAAC 57.267 45.455 0.00 0.00 0.00 2.01
2219 3544 3.771216 TCTTGTACTCCCTCCGTAAACT 58.229 45.455 0.00 0.00 0.00 2.66
2221 3546 5.324409 TCTTGTACTCCCTCCGTAAACTAA 58.676 41.667 0.00 0.00 0.00 2.24
2223 3548 7.118723 TCTTGTACTCCCTCCGTAAACTAATA 58.881 38.462 0.00 0.00 0.00 0.98
2225 3550 7.281040 TGTACTCCCTCCGTAAACTAATATG 57.719 40.000 0.00 0.00 0.00 1.78
2226 3551 7.062322 TGTACTCCCTCCGTAAACTAATATGA 58.938 38.462 0.00 0.00 0.00 2.15
2227 3552 6.651975 ACTCCCTCCGTAAACTAATATGAG 57.348 41.667 0.00 0.00 0.00 2.90
2228 3553 6.134754 ACTCCCTCCGTAAACTAATATGAGT 58.865 40.000 0.00 0.00 0.00 3.41
2229 3554 6.040616 ACTCCCTCCGTAAACTAATATGAGTG 59.959 42.308 0.00 0.00 0.00 3.51
2230 3555 5.895534 TCCCTCCGTAAACTAATATGAGTGT 59.104 40.000 0.00 0.00 0.00 3.55
2231 3556 6.381994 TCCCTCCGTAAACTAATATGAGTGTT 59.618 38.462 0.00 0.00 0.00 3.32
2232 3557 7.046033 CCCTCCGTAAACTAATATGAGTGTTT 58.954 38.462 0.00 0.00 36.69 2.83
2233 3558 8.199449 CCCTCCGTAAACTAATATGAGTGTTTA 58.801 37.037 0.00 0.00 34.88 2.01
2234 3559 9.245962 CCTCCGTAAACTAATATGAGTGTTTAG 57.754 37.037 0.00 0.00 36.13 1.85
2303 3628 8.625467 AGGGAGTAGATAAGTAAAAGATGGTT 57.375 34.615 0.00 0.00 0.00 3.67
2305 3630 9.682465 GGGAGTAGATAAGTAAAAGATGGTTTT 57.318 33.333 0.00 0.00 0.00 2.43
2383 3708 8.803235 AGATGGTGATGATATCCATTTGATTTG 58.197 33.333 0.00 0.00 41.33 2.32
2489 4010 6.539173 ACATTCTGTTAGAACATGGGTGTAA 58.461 36.000 0.00 0.00 37.00 2.41
2500 4021 5.359194 ACATGGGTGTAATCCTGTAGAAG 57.641 43.478 0.00 0.00 36.63 2.85
2523 4045 8.622948 AAGAGTTAAAGTAGTTGGATGGAAAG 57.377 34.615 0.00 0.00 0.00 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.964604 TCTTCAGAAGAGTTTAGTTAAAGGC 57.035 36.000 8.95 0.00 32.71 4.35
15 16 2.490115 ACTCACGTAGGCTCTTCAGAAG 59.510 50.000 3.45 3.45 0.00 2.85
18 19 1.813178 TGACTCACGTAGGCTCTTCAG 59.187 52.381 0.00 0.00 32.57 3.02
69 70 0.178068 GCATTACAAGCCCGAGGAGA 59.822 55.000 0.00 0.00 0.00 3.71
92 93 0.603065 AGGGGCGCAATTTTTCTGTC 59.397 50.000 10.83 0.00 0.00 3.51
95 96 0.318120 CACAGGGGCGCAATTTTTCT 59.682 50.000 10.83 0.00 0.00 2.52
97 98 0.033366 GACACAGGGGCGCAATTTTT 59.967 50.000 10.83 0.00 0.00 1.94
106 108 2.187946 CATCCTCGACACAGGGGC 59.812 66.667 0.00 0.00 33.81 5.80
125 127 8.230472 AGACTTTATTATTCTCATGCTTTGGG 57.770 34.615 0.00 0.00 0.00 4.12
143 145 3.500680 GGCACGGTGAATTGAAGACTTTA 59.499 43.478 13.29 0.00 0.00 1.85
144 146 2.293399 GGCACGGTGAATTGAAGACTTT 59.707 45.455 13.29 0.00 0.00 2.66
152 379 1.857837 GTGTTTTGGCACGGTGAATTG 59.142 47.619 13.29 0.00 0.00 2.32
183 410 1.100510 TCCCTCGTTATCGACACCAG 58.899 55.000 0.00 0.00 41.35 4.00
193 420 1.000060 CTGTTTCGGTGTCCCTCGTTA 60.000 52.381 0.00 0.00 0.00 3.18
202 429 2.635915 TGGAGTTATCCTGTTTCGGTGT 59.364 45.455 0.00 0.00 46.80 4.16
208 435 3.650942 TGTGAGGTGGAGTTATCCTGTTT 59.349 43.478 0.00 0.00 46.80 2.83
213 440 3.695830 TTGTGTGAGGTGGAGTTATCC 57.304 47.619 0.00 0.00 46.87 2.59
247 474 8.359642 AGCTAATTGTGTGATGTGTTGTTATTT 58.640 29.630 0.00 0.00 0.00 1.40
254 481 5.762711 TGTGTAGCTAATTGTGTGATGTGTT 59.237 36.000 0.00 0.00 0.00 3.32
267 494 5.039920 TCATCATGCCTTGTGTAGCTAAT 57.960 39.130 0.00 0.00 0.00 1.73
300 527 9.868277 CTGATCTCATCTCAACTACTTAAACTT 57.132 33.333 0.00 0.00 0.00 2.66
301 528 9.249053 TCTGATCTCATCTCAACTACTTAAACT 57.751 33.333 0.00 0.00 0.00 2.66
302 529 9.296400 GTCTGATCTCATCTCAACTACTTAAAC 57.704 37.037 0.00 0.00 0.00 2.01
303 530 9.249053 AGTCTGATCTCATCTCAACTACTTAAA 57.751 33.333 0.00 0.00 0.00 1.52
304 531 8.815565 AGTCTGATCTCATCTCAACTACTTAA 57.184 34.615 0.00 0.00 0.00 1.85
305 532 9.907229 TTAGTCTGATCTCATCTCAACTACTTA 57.093 33.333 0.00 0.00 0.00 2.24
306 533 8.682710 GTTAGTCTGATCTCATCTCAACTACTT 58.317 37.037 0.00 0.00 0.00 2.24
307 534 7.831690 TGTTAGTCTGATCTCATCTCAACTACT 59.168 37.037 0.00 0.00 0.00 2.57
308 535 7.990917 TGTTAGTCTGATCTCATCTCAACTAC 58.009 38.462 0.00 0.00 0.00 2.73
309 536 8.759481 ATGTTAGTCTGATCTCATCTCAACTA 57.241 34.615 0.00 0.00 0.00 2.24
310 537 7.658525 ATGTTAGTCTGATCTCATCTCAACT 57.341 36.000 0.00 0.00 0.00 3.16
311 538 8.629158 ACTATGTTAGTCTGATCTCATCTCAAC 58.371 37.037 0.00 0.00 32.47 3.18
312 539 8.628280 CACTATGTTAGTCTGATCTCATCTCAA 58.372 37.037 0.00 0.00 36.76 3.02
313 540 7.777440 ACACTATGTTAGTCTGATCTCATCTCA 59.223 37.037 0.00 0.00 36.76 3.27
314 541 8.075574 CACACTATGTTAGTCTGATCTCATCTC 58.924 40.741 0.00 0.00 36.76 2.75
315 542 7.014134 CCACACTATGTTAGTCTGATCTCATCT 59.986 40.741 0.00 0.00 36.76 2.90
316 543 7.013750 TCCACACTATGTTAGTCTGATCTCATC 59.986 40.741 0.00 0.00 36.76 2.92
317 544 6.836007 TCCACACTATGTTAGTCTGATCTCAT 59.164 38.462 0.00 0.00 36.76 2.90
318 545 6.187682 TCCACACTATGTTAGTCTGATCTCA 58.812 40.000 0.00 0.00 36.76 3.27
319 546 6.701145 TCCACACTATGTTAGTCTGATCTC 57.299 41.667 0.00 0.00 36.76 2.75
320 547 7.040062 GCTATCCACACTATGTTAGTCTGATCT 60.040 40.741 0.00 0.00 36.76 2.75
321 548 7.087639 GCTATCCACACTATGTTAGTCTGATC 58.912 42.308 0.00 0.00 36.76 2.92
322 549 6.551227 TGCTATCCACACTATGTTAGTCTGAT 59.449 38.462 0.00 0.00 36.76 2.90
323 550 5.891551 TGCTATCCACACTATGTTAGTCTGA 59.108 40.000 0.00 0.00 36.76 3.27
324 551 6.149129 TGCTATCCACACTATGTTAGTCTG 57.851 41.667 0.00 0.00 36.76 3.51
325 552 5.894393 ACTGCTATCCACACTATGTTAGTCT 59.106 40.000 0.00 0.00 36.76 3.24
326 553 6.150396 ACTGCTATCCACACTATGTTAGTC 57.850 41.667 0.00 0.00 36.76 2.59
327 554 7.655521 TTACTGCTATCCACACTATGTTAGT 57.344 36.000 0.00 0.00 40.28 2.24
328 555 8.982685 CATTTACTGCTATCCACACTATGTTAG 58.017 37.037 0.00 0.00 0.00 2.34
329 556 8.887036 CATTTACTGCTATCCACACTATGTTA 57.113 34.615 0.00 0.00 0.00 2.41
330 557 7.792374 CATTTACTGCTATCCACACTATGTT 57.208 36.000 0.00 0.00 0.00 2.71
346 573 3.869246 CCCCGTACTTGTAGCATTTACTG 59.131 47.826 0.00 0.00 0.00 2.74
347 574 3.516700 ACCCCGTACTTGTAGCATTTACT 59.483 43.478 0.00 0.00 0.00 2.24
348 575 3.865446 ACCCCGTACTTGTAGCATTTAC 58.135 45.455 0.00 0.00 0.00 2.01
349 576 4.556592 AACCCCGTACTTGTAGCATTTA 57.443 40.909 0.00 0.00 0.00 1.40
350 577 3.428413 AACCCCGTACTTGTAGCATTT 57.572 42.857 0.00 0.00 0.00 2.32
351 578 4.765813 ATAACCCCGTACTTGTAGCATT 57.234 40.909 0.00 0.00 0.00 3.56
352 579 4.261741 CGTATAACCCCGTACTTGTAGCAT 60.262 45.833 0.00 0.00 0.00 3.79
353 580 3.066621 CGTATAACCCCGTACTTGTAGCA 59.933 47.826 0.00 0.00 0.00 3.49
354 581 3.550842 CCGTATAACCCCGTACTTGTAGC 60.551 52.174 0.00 0.00 0.00 3.58
355 582 3.004734 CCCGTATAACCCCGTACTTGTAG 59.995 52.174 0.00 0.00 0.00 2.74
356 583 2.955660 CCCGTATAACCCCGTACTTGTA 59.044 50.000 0.00 0.00 0.00 2.41
357 584 1.756538 CCCGTATAACCCCGTACTTGT 59.243 52.381 0.00 0.00 0.00 3.16
358 585 1.069049 CCCCGTATAACCCCGTACTTG 59.931 57.143 0.00 0.00 0.00 3.16
359 586 1.342975 ACCCCGTATAACCCCGTACTT 60.343 52.381 0.00 0.00 0.00 2.24
360 587 0.261696 ACCCCGTATAACCCCGTACT 59.738 55.000 0.00 0.00 0.00 2.73
361 588 1.119684 AACCCCGTATAACCCCGTAC 58.880 55.000 0.00 0.00 0.00 3.67
362 589 1.872773 AAACCCCGTATAACCCCGTA 58.127 50.000 0.00 0.00 0.00 4.02
363 590 0.991146 AAAACCCCGTATAACCCCGT 59.009 50.000 0.00 0.00 0.00 5.28
364 591 2.093235 TGTAAAACCCCGTATAACCCCG 60.093 50.000 0.00 0.00 0.00 5.73
365 592 3.544684 CTGTAAAACCCCGTATAACCCC 58.455 50.000 0.00 0.00 0.00 4.95
366 593 3.054434 ACCTGTAAAACCCCGTATAACCC 60.054 47.826 0.00 0.00 0.00 4.11
367 594 4.220693 ACCTGTAAAACCCCGTATAACC 57.779 45.455 0.00 0.00 0.00 2.85
368 595 4.395854 CCAACCTGTAAAACCCCGTATAAC 59.604 45.833 0.00 0.00 0.00 1.89
369 596 4.587891 CCAACCTGTAAAACCCCGTATAA 58.412 43.478 0.00 0.00 0.00 0.98
370 597 3.621958 GCCAACCTGTAAAACCCCGTATA 60.622 47.826 0.00 0.00 0.00 1.47
371 598 2.880990 GCCAACCTGTAAAACCCCGTAT 60.881 50.000 0.00 0.00 0.00 3.06
372 599 1.545204 GCCAACCTGTAAAACCCCGTA 60.545 52.381 0.00 0.00 0.00 4.02
373 600 0.824595 GCCAACCTGTAAAACCCCGT 60.825 55.000 0.00 0.00 0.00 5.28
374 601 0.538746 AGCCAACCTGTAAAACCCCG 60.539 55.000 0.00 0.00 0.00 5.73
375 602 2.040679 TCTAGCCAACCTGTAAAACCCC 59.959 50.000 0.00 0.00 0.00 4.95
376 603 3.428413 TCTAGCCAACCTGTAAAACCC 57.572 47.619 0.00 0.00 0.00 4.11
377 604 5.777850 TTTTCTAGCCAACCTGTAAAACC 57.222 39.130 0.00 0.00 0.00 3.27
378 605 9.353999 CATTATTTTCTAGCCAACCTGTAAAAC 57.646 33.333 0.00 0.00 0.00 2.43
379 606 8.032451 GCATTATTTTCTAGCCAACCTGTAAAA 58.968 33.333 0.00 0.00 0.00 1.52
380 607 7.543756 GCATTATTTTCTAGCCAACCTGTAAA 58.456 34.615 0.00 0.00 0.00 2.01
381 608 6.183360 CGCATTATTTTCTAGCCAACCTGTAA 60.183 38.462 0.00 0.00 0.00 2.41
382 609 5.295787 CGCATTATTTTCTAGCCAACCTGTA 59.704 40.000 0.00 0.00 0.00 2.74
383 610 4.096382 CGCATTATTTTCTAGCCAACCTGT 59.904 41.667 0.00 0.00 0.00 4.00
384 611 4.335315 TCGCATTATTTTCTAGCCAACCTG 59.665 41.667 0.00 0.00 0.00 4.00
385 612 4.335594 GTCGCATTATTTTCTAGCCAACCT 59.664 41.667 0.00 0.00 0.00 3.50
386 613 4.598062 GTCGCATTATTTTCTAGCCAACC 58.402 43.478 0.00 0.00 0.00 3.77
387 614 4.201783 ACGTCGCATTATTTTCTAGCCAAC 60.202 41.667 0.00 0.00 0.00 3.77
388 615 3.936453 ACGTCGCATTATTTTCTAGCCAA 59.064 39.130 0.00 0.00 0.00 4.52
389 616 3.308595 CACGTCGCATTATTTTCTAGCCA 59.691 43.478 0.00 0.00 0.00 4.75
390 617 3.554324 TCACGTCGCATTATTTTCTAGCC 59.446 43.478 0.00 0.00 0.00 3.93
391 618 4.772046 TCACGTCGCATTATTTTCTAGC 57.228 40.909 0.00 0.00 0.00 3.42
392 619 6.762108 AGTTTCACGTCGCATTATTTTCTAG 58.238 36.000 0.00 0.00 0.00 2.43
393 620 6.715344 AGTTTCACGTCGCATTATTTTCTA 57.285 33.333 0.00 0.00 0.00 2.10
394 621 5.607119 AGTTTCACGTCGCATTATTTTCT 57.393 34.783 0.00 0.00 0.00 2.52
395 622 6.141685 ACAAAGTTTCACGTCGCATTATTTTC 59.858 34.615 0.00 0.00 0.00 2.29
396 623 5.974751 ACAAAGTTTCACGTCGCATTATTTT 59.025 32.000 0.00 0.00 0.00 1.82
397 624 5.398122 CACAAAGTTTCACGTCGCATTATTT 59.602 36.000 0.00 0.00 0.00 1.40
398 625 4.909305 CACAAAGTTTCACGTCGCATTATT 59.091 37.500 0.00 0.00 0.00 1.40
399 626 4.212425 TCACAAAGTTTCACGTCGCATTAT 59.788 37.500 0.00 0.00 0.00 1.28
400 627 3.556365 TCACAAAGTTTCACGTCGCATTA 59.444 39.130 0.00 0.00 0.00 1.90
401 628 2.353269 TCACAAAGTTTCACGTCGCATT 59.647 40.909 0.00 0.00 0.00 3.56
402 629 1.937223 TCACAAAGTTTCACGTCGCAT 59.063 42.857 0.00 0.00 0.00 4.73
403 630 1.360820 TCACAAAGTTTCACGTCGCA 58.639 45.000 0.00 0.00 0.00 5.10
404 631 2.033236 TCATCACAAAGTTTCACGTCGC 60.033 45.455 0.00 0.00 0.00 5.19
405 632 3.489416 TCTCATCACAAAGTTTCACGTCG 59.511 43.478 0.00 0.00 0.00 5.12
406 633 5.597813 ATCTCATCACAAAGTTTCACGTC 57.402 39.130 0.00 0.00 0.00 4.34
407 634 6.038161 TGAAATCTCATCACAAAGTTTCACGT 59.962 34.615 0.00 0.00 31.46 4.49
408 635 6.429624 TGAAATCTCATCACAAAGTTTCACG 58.570 36.000 0.00 0.00 31.46 4.35
409 636 7.420800 ACTGAAATCTCATCACAAAGTTTCAC 58.579 34.615 0.00 0.00 32.59 3.18
410 637 7.572523 ACTGAAATCTCATCACAAAGTTTCA 57.427 32.000 0.00 0.00 34.24 2.69
411 638 7.096312 GCAACTGAAATCTCATCACAAAGTTTC 60.096 37.037 0.00 0.00 0.00 2.78
412 639 6.698766 GCAACTGAAATCTCATCACAAAGTTT 59.301 34.615 0.00 0.00 0.00 2.66
413 640 6.211515 GCAACTGAAATCTCATCACAAAGTT 58.788 36.000 0.00 0.00 0.00 2.66
414 641 5.561532 CGCAACTGAAATCTCATCACAAAGT 60.562 40.000 0.00 0.00 0.00 2.66
415 642 4.849926 CGCAACTGAAATCTCATCACAAAG 59.150 41.667 0.00 0.00 0.00 2.77
416 643 4.514816 TCGCAACTGAAATCTCATCACAAA 59.485 37.500 0.00 0.00 0.00 2.83
417 644 4.064388 TCGCAACTGAAATCTCATCACAA 58.936 39.130 0.00 0.00 0.00 3.33
418 645 3.663025 TCGCAACTGAAATCTCATCACA 58.337 40.909 0.00 0.00 0.00 3.58
419 646 4.668576 TTCGCAACTGAAATCTCATCAC 57.331 40.909 0.00 0.00 0.00 3.06
420 647 4.378770 GCTTTCGCAACTGAAATCTCATCA 60.379 41.667 0.00 0.00 37.24 3.07
421 648 4.094212 GCTTTCGCAACTGAAATCTCATC 58.906 43.478 0.00 0.00 37.24 2.92
422 649 3.425359 CGCTTTCGCAACTGAAATCTCAT 60.425 43.478 0.00 0.00 37.24 2.90
423 650 2.096268 CGCTTTCGCAACTGAAATCTCA 60.096 45.455 0.00 0.00 37.24 3.27
424 651 2.499896 CGCTTTCGCAACTGAAATCTC 58.500 47.619 0.00 0.00 37.24 2.75
425 652 1.197721 CCGCTTTCGCAACTGAAATCT 59.802 47.619 0.00 0.00 37.24 2.40
426 653 1.606606 CCGCTTTCGCAACTGAAATC 58.393 50.000 0.00 0.00 37.24 2.17
427 654 0.387239 GCCGCTTTCGCAACTGAAAT 60.387 50.000 0.00 0.00 37.24 2.17
428 655 1.008995 GCCGCTTTCGCAACTGAAA 60.009 52.632 0.00 0.00 36.48 2.69
429 656 2.637025 GCCGCTTTCGCAACTGAA 59.363 55.556 0.00 0.00 35.30 3.02
430 657 3.353836 GGCCGCTTTCGCAACTGA 61.354 61.111 0.00 0.00 35.30 3.41
431 658 4.404654 GGGCCGCTTTCGCAACTG 62.405 66.667 0.00 0.00 35.30 3.16
445 672 3.252585 AATTTCAGGGGGTGGGGGC 62.253 63.158 0.00 0.00 0.00 5.80
446 673 1.001631 GAATTTCAGGGGGTGGGGG 59.998 63.158 0.00 0.00 0.00 5.40
447 674 0.324645 CAGAATTTCAGGGGGTGGGG 60.325 60.000 0.00 0.00 0.00 4.96
448 675 0.704076 TCAGAATTTCAGGGGGTGGG 59.296 55.000 0.00 0.00 0.00 4.61
449 676 1.341383 CCTCAGAATTTCAGGGGGTGG 60.341 57.143 0.00 0.00 0.00 4.61
450 677 1.341383 CCCTCAGAATTTCAGGGGGTG 60.341 57.143 16.75 0.00 43.12 4.61
451 678 1.002857 CCCTCAGAATTTCAGGGGGT 58.997 55.000 16.75 0.00 43.12 4.95
452 679 1.213926 CTCCCTCAGAATTTCAGGGGG 59.786 57.143 18.48 18.48 46.44 5.40
453 680 1.213926 CCTCCCTCAGAATTTCAGGGG 59.786 57.143 17.55 10.55 46.44 4.79
455 682 1.213926 CCCCTCCCTCAGAATTTCAGG 59.786 57.143 0.00 0.00 0.00 3.86
456 683 1.213926 CCCCCTCCCTCAGAATTTCAG 59.786 57.143 0.00 0.00 0.00 3.02
457 684 1.298953 CCCCCTCCCTCAGAATTTCA 58.701 55.000 0.00 0.00 0.00 2.69
473 700 2.808906 ACTCTAAACATTGCTCCCCC 57.191 50.000 0.00 0.00 0.00 5.40
474 701 7.040409 CCAATTATACTCTAAACATTGCTCCCC 60.040 40.741 0.00 0.00 0.00 4.81
475 702 7.522236 GCCAATTATACTCTAAACATTGCTCCC 60.522 40.741 0.00 0.00 0.00 4.30
476 703 7.229506 AGCCAATTATACTCTAAACATTGCTCC 59.770 37.037 0.00 0.00 0.00 4.70
477 704 8.159344 AGCCAATTATACTCTAAACATTGCTC 57.841 34.615 0.00 0.00 0.00 4.26
478 705 8.408601 CAAGCCAATTATACTCTAAACATTGCT 58.591 33.333 0.00 0.00 0.00 3.91
479 706 8.405531 TCAAGCCAATTATACTCTAAACATTGC 58.594 33.333 0.00 0.00 0.00 3.56
482 709 8.571336 GCATCAAGCCAATTATACTCTAAACAT 58.429 33.333 0.00 0.00 37.23 2.71
483 710 7.930217 GCATCAAGCCAATTATACTCTAAACA 58.070 34.615 0.00 0.00 37.23 2.83
500 727 1.067425 TGCTGAATGTTGGCATCAAGC 60.067 47.619 11.86 11.86 40.74 4.01
501 728 3.306917 TTGCTGAATGTTGGCATCAAG 57.693 42.857 1.83 0.00 35.84 3.02
502 729 3.747854 TTTGCTGAATGTTGGCATCAA 57.252 38.095 1.83 0.00 35.84 2.57
503 730 3.747854 TTTTGCTGAATGTTGGCATCA 57.252 38.095 0.00 0.00 35.84 3.07
504 731 5.387279 CAAATTTTGCTGAATGTTGGCATC 58.613 37.500 0.00 0.00 35.84 3.91
505 732 4.216687 CCAAATTTTGCTGAATGTTGGCAT 59.783 37.500 3.50 0.00 35.84 4.40
506 733 3.564644 CCAAATTTTGCTGAATGTTGGCA 59.435 39.130 3.50 0.00 0.00 4.92
507 734 3.609879 GCCAAATTTTGCTGAATGTTGGC 60.610 43.478 20.73 20.73 40.94 4.52
508 735 3.564644 TGCCAAATTTTGCTGAATGTTGG 59.435 39.130 14.62 14.51 34.23 3.77
509 736 4.815040 TGCCAAATTTTGCTGAATGTTG 57.185 36.364 14.62 0.00 0.00 3.33
510 737 5.831702 TTTGCCAAATTTTGCTGAATGTT 57.168 30.435 14.62 0.00 0.00 2.71
511 738 5.831702 TTTTGCCAAATTTTGCTGAATGT 57.168 30.435 14.62 0.00 0.00 2.71
512 739 8.798748 TTAATTTTGCCAAATTTTGCTGAATG 57.201 26.923 13.13 0.00 39.19 2.67
513 740 9.813446 TTTTAATTTTGCCAAATTTTGCTGAAT 57.187 22.222 13.13 11.22 39.19 2.57
514 741 9.298774 CTTTTAATTTTGCCAAATTTTGCTGAA 57.701 25.926 13.13 9.67 39.19 3.02
515 742 8.465201 ACTTTTAATTTTGCCAAATTTTGCTGA 58.535 25.926 13.13 2.04 39.19 4.26
516 743 8.631676 ACTTTTAATTTTGCCAAATTTTGCTG 57.368 26.923 13.13 4.66 39.19 4.41
517 744 9.085250 CAACTTTTAATTTTGCCAAATTTTGCT 57.915 25.926 13.13 0.00 39.19 3.91
518 745 7.845137 GCAACTTTTAATTTTGCCAAATTTTGC 59.155 29.630 18.61 18.61 39.19 3.68
536 763 9.920133 AACAATTGTTAAATTTTGGCAACTTTT 57.080 22.222 22.10 5.63 36.32 2.27
537 764 9.920133 AAACAATTGTTAAATTTTGGCAACTTT 57.080 22.222 23.53 5.83 37.25 2.66
538 765 9.351570 CAAACAATTGTTAAATTTTGGCAACTT 57.648 25.926 23.53 0.00 37.25 2.66
539 766 8.908172 CAAACAATTGTTAAATTTTGGCAACT 57.092 26.923 23.53 0.55 37.25 3.16
577 804 8.207545 TGTTGGCTAGTAATTGGTTGAATTTTT 58.792 29.630 0.00 0.00 35.74 1.94
578 805 7.731054 TGTTGGCTAGTAATTGGTTGAATTTT 58.269 30.769 0.00 0.00 35.74 1.82
579 806 7.296628 TGTTGGCTAGTAATTGGTTGAATTT 57.703 32.000 0.00 0.00 35.74 1.82
580 807 6.909550 TGTTGGCTAGTAATTGGTTGAATT 57.090 33.333 0.00 0.00 37.96 2.17
581 808 7.480760 AATGTTGGCTAGTAATTGGTTGAAT 57.519 32.000 0.00 0.00 0.00 2.57
582 809 6.909550 AATGTTGGCTAGTAATTGGTTGAA 57.090 33.333 0.00 0.00 0.00 2.69
583 810 6.491745 TCAAATGTTGGCTAGTAATTGGTTGA 59.508 34.615 0.00 0.00 0.00 3.18
584 811 6.586082 GTCAAATGTTGGCTAGTAATTGGTTG 59.414 38.462 0.00 0.00 31.13 3.77
585 812 6.266558 TGTCAAATGTTGGCTAGTAATTGGTT 59.733 34.615 0.00 0.00 35.94 3.67
586 813 5.772672 TGTCAAATGTTGGCTAGTAATTGGT 59.227 36.000 0.00 0.00 35.94 3.67
587 814 6.266168 TGTCAAATGTTGGCTAGTAATTGG 57.734 37.500 0.00 0.00 35.94 3.16
588 815 8.649841 CAAATGTCAAATGTTGGCTAGTAATTG 58.350 33.333 0.00 0.00 35.94 2.32
589 816 7.331687 GCAAATGTCAAATGTTGGCTAGTAATT 59.668 33.333 0.00 0.00 35.94 1.40
590 817 6.813152 GCAAATGTCAAATGTTGGCTAGTAAT 59.187 34.615 0.00 0.00 35.94 1.89
591 818 6.155827 GCAAATGTCAAATGTTGGCTAGTAA 58.844 36.000 0.00 0.00 35.94 2.24
592 819 5.336372 GGCAAATGTCAAATGTTGGCTAGTA 60.336 40.000 0.00 0.00 41.77 1.82
593 820 4.559153 GCAAATGTCAAATGTTGGCTAGT 58.441 39.130 0.00 0.00 35.94 2.57
594 821 3.928375 GGCAAATGTCAAATGTTGGCTAG 59.072 43.478 0.00 0.00 41.77 3.42
595 822 3.323115 TGGCAAATGTCAAATGTTGGCTA 59.677 39.130 9.71 0.00 44.40 3.93
596 823 2.104451 TGGCAAATGTCAAATGTTGGCT 59.896 40.909 9.71 0.00 44.40 4.75
597 824 2.492012 TGGCAAATGTCAAATGTTGGC 58.508 42.857 0.00 0.00 44.36 4.52
614 841 4.696455 AGTTGGCAATGCTAATATTTGGC 58.304 39.130 7.40 0.00 37.69 4.52
615 842 7.414319 CCAAAAGTTGGCAATGCTAATATTTGG 60.414 37.037 29.54 29.54 45.17 3.28
616 843 7.465989 CCAAAAGTTGGCAATGCTAATATTTG 58.534 34.615 23.95 23.95 45.17 2.32
617 844 7.614124 CCAAAAGTTGGCAATGCTAATATTT 57.386 32.000 7.40 9.11 45.17 1.40
632 859 2.791383 TGGTTCGATGCCAAAAGTTG 57.209 45.000 6.75 0.00 32.29 3.16
639 866 5.650266 AGTAAACATAATTGGTTCGATGCCA 59.350 36.000 5.26 5.26 33.83 4.92
640 867 6.131544 AGTAAACATAATTGGTTCGATGCC 57.868 37.500 0.00 0.00 33.83 4.40
641 868 8.460831 AAAAGTAAACATAATTGGTTCGATGC 57.539 30.769 0.00 0.00 33.83 3.91
679 906 9.841295 TCTTCCAACAAACTAGTAAACATAACT 57.159 29.630 0.00 0.00 0.00 2.24
683 910 8.793592 GGAATCTTCCAACAAACTAGTAAACAT 58.206 33.333 0.00 0.00 46.76 2.71
684 911 8.161699 GGAATCTTCCAACAAACTAGTAAACA 57.838 34.615 0.00 0.00 46.76 2.83
699 926 3.681302 GGCACCTGCAGGAATCTTCCA 62.681 57.143 39.19 0.00 44.30 3.53
700 927 1.034292 GGCACCTGCAGGAATCTTCC 61.034 60.000 39.19 22.77 44.36 3.46
701 928 0.034670 AGGCACCTGCAGGAATCTTC 60.035 55.000 39.19 19.66 44.36 2.87
702 929 0.323178 CAGGCACCTGCAGGAATCTT 60.323 55.000 39.19 19.26 44.36 2.40
703 930 1.302285 CAGGCACCTGCAGGAATCT 59.698 57.895 39.19 26.01 44.36 2.40
704 931 3.915575 CAGGCACCTGCAGGAATC 58.084 61.111 39.19 24.33 44.36 2.52
713 940 0.537188 CAGGAATCGTACAGGCACCT 59.463 55.000 0.00 0.00 0.00 4.00
714 941 1.090052 GCAGGAATCGTACAGGCACC 61.090 60.000 0.00 0.00 0.00 5.01
715 942 0.391130 TGCAGGAATCGTACAGGCAC 60.391 55.000 0.00 0.00 0.00 5.01
716 943 0.541392 ATGCAGGAATCGTACAGGCA 59.459 50.000 0.00 0.00 0.00 4.75
717 944 1.668419 AATGCAGGAATCGTACAGGC 58.332 50.000 0.00 0.00 0.00 4.85
718 945 3.242413 CGAAAATGCAGGAATCGTACAGG 60.242 47.826 0.00 0.00 0.00 4.00
719 946 3.242413 CCGAAAATGCAGGAATCGTACAG 60.242 47.826 11.39 0.00 0.00 2.74
720 947 2.675844 CCGAAAATGCAGGAATCGTACA 59.324 45.455 11.39 0.00 0.00 2.90
721 948 2.676342 ACCGAAAATGCAGGAATCGTAC 59.324 45.455 11.39 0.00 0.00 3.67
722 949 2.675844 CACCGAAAATGCAGGAATCGTA 59.324 45.455 11.39 0.00 0.00 3.43
723 950 1.468520 CACCGAAAATGCAGGAATCGT 59.531 47.619 11.39 0.00 0.00 3.73
724 951 1.468520 ACACCGAAAATGCAGGAATCG 59.531 47.619 0.00 0.00 0.00 3.34
725 952 2.415893 CCACACCGAAAATGCAGGAATC 60.416 50.000 0.00 0.00 0.00 2.52
726 953 1.545582 CCACACCGAAAATGCAGGAAT 59.454 47.619 0.00 0.00 0.00 3.01
727 954 0.958091 CCACACCGAAAATGCAGGAA 59.042 50.000 0.00 0.00 0.00 3.36
728 955 0.109532 TCCACACCGAAAATGCAGGA 59.890 50.000 0.00 0.00 0.00 3.86
729 956 0.958091 TTCCACACCGAAAATGCAGG 59.042 50.000 0.00 0.00 0.00 4.85
730 957 1.666888 GCTTCCACACCGAAAATGCAG 60.667 52.381 0.00 0.00 0.00 4.41
731 958 0.313672 GCTTCCACACCGAAAATGCA 59.686 50.000 0.00 0.00 0.00 3.96
732 959 0.729140 CGCTTCCACACCGAAAATGC 60.729 55.000 0.00 0.00 0.00 3.56
733 960 0.109781 CCGCTTCCACACCGAAAATG 60.110 55.000 0.00 0.00 0.00 2.32
734 961 1.862602 GCCGCTTCCACACCGAAAAT 61.863 55.000 0.00 0.00 0.00 1.82
735 962 2.548295 GCCGCTTCCACACCGAAAA 61.548 57.895 0.00 0.00 0.00 2.29
736 963 2.975799 GCCGCTTCCACACCGAAA 60.976 61.111 0.00 0.00 0.00 3.46
737 964 3.876589 GAGCCGCTTCCACACCGAA 62.877 63.158 0.00 0.00 0.00 4.30
738 965 4.373116 GAGCCGCTTCCACACCGA 62.373 66.667 0.00 0.00 0.00 4.69
785 1012 0.389426 CCCACACTACCGAGTTTCCG 60.389 60.000 0.00 0.00 31.73 4.30
787 1014 0.320697 AGCCCACACTACCGAGTTTC 59.679 55.000 0.00 0.00 31.73 2.78
788 1015 0.034896 CAGCCCACACTACCGAGTTT 59.965 55.000 0.00 0.00 31.73 2.66
789 1016 1.671742 CAGCCCACACTACCGAGTT 59.328 57.895 0.00 0.00 31.73 3.01
790 1017 2.283529 CCAGCCCACACTACCGAGT 61.284 63.158 0.00 0.00 35.80 4.18
1443 1927 4.552365 ATCATGGGGCTGGCGTCG 62.552 66.667 0.00 0.00 0.00 5.12
1444 1928 2.324014 TACATCATGGGGCTGGCGTC 62.324 60.000 0.00 0.00 0.00 5.19
1587 2105 5.409826 GCAAGAAGCTGAAAGAAACTAGCTA 59.590 40.000 0.00 0.00 45.09 3.32
1590 2108 4.516698 TGGCAAGAAGCTGAAAGAAACTAG 59.483 41.667 0.00 0.00 44.79 2.57
1785 2617 3.692406 GGCGGAACACGGACCTCT 61.692 66.667 0.00 0.00 44.51 3.69
1857 2695 4.794439 CCGCTCGGACGCACATGA 62.794 66.667 1.35 0.00 37.50 3.07
2207 3532 6.158023 ACACTCATATTAGTTTACGGAGGG 57.842 41.667 0.00 0.00 0.00 4.30
2208 3533 9.245962 CTAAACACTCATATTAGTTTACGGAGG 57.754 37.037 0.00 0.00 35.90 4.30
2256 3581 9.381038 TCCCTCTGTAAACTAATATAAGAGCAT 57.619 33.333 0.00 0.00 0.00 3.79
2257 3582 8.777578 TCCCTCTGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
2258 3583 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2266 3591 9.939424 ACTTATCTACTCCCTCTGTAAACTAAT 57.061 33.333 0.00 0.00 0.00 1.73
2269 3594 9.765295 TTTACTTATCTACTCCCTCTGTAAACT 57.235 33.333 0.00 0.00 0.00 2.66
2272 3597 9.986157 TCTTTTACTTATCTACTCCCTCTGTAA 57.014 33.333 0.00 0.00 0.00 2.41
2274 3599 8.919145 CATCTTTTACTTATCTACTCCCTCTGT 58.081 37.037 0.00 0.00 0.00 3.41
2275 3600 8.364142 CCATCTTTTACTTATCTACTCCCTCTG 58.636 40.741 0.00 0.00 0.00 3.35
2276 3601 8.068733 ACCATCTTTTACTTATCTACTCCCTCT 58.931 37.037 0.00 0.00 0.00 3.69
2277 3602 8.252624 ACCATCTTTTACTTATCTACTCCCTC 57.747 38.462 0.00 0.00 0.00 4.30
2278 3603 8.625467 AACCATCTTTTACTTATCTACTCCCT 57.375 34.615 0.00 0.00 0.00 4.20
2279 3604 9.682465 AAAACCATCTTTTACTTATCTACTCCC 57.318 33.333 0.00 0.00 0.00 4.30
2303 3628 5.355596 ACTGATTTGCGGTTTCAATTCAAA 58.644 33.333 0.00 0.00 36.51 2.69
2305 3630 4.582701 ACTGATTTGCGGTTTCAATTCA 57.417 36.364 0.00 0.00 35.95 2.57
2306 3631 4.981674 TCAACTGATTTGCGGTTTCAATTC 59.018 37.500 0.00 0.00 43.52 2.17
2383 3708 4.864704 TTCAAGACAAGTAAAATGGGCC 57.135 40.909 0.00 0.00 0.00 5.80
2489 4010 8.532819 CCAACTACTTTAACTCTTCTACAGGAT 58.467 37.037 0.00 0.00 0.00 3.24
2500 4021 7.878644 ACTCTTTCCATCCAACTACTTTAACTC 59.121 37.037 0.00 0.00 0.00 3.01
2523 4045 2.717639 AATCCACATGGCACCTACTC 57.282 50.000 0.00 0.00 34.44 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.