Multiple sequence alignment - TraesCS2B01G094500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G094500 chr2B 100.000 4193 0 0 1 4193 54552405 54556597 0.000000e+00 7744.0
1 TraesCS2B01G094500 chr2B 88.843 242 22 2 348 589 382947126 382946890 4.100000e-75 292.0
2 TraesCS2B01G094500 chr2D 89.688 4073 272 59 1 4005 32805863 32809855 0.000000e+00 5059.0
3 TraesCS2B01G094500 chr2D 86.875 160 9 9 4003 4161 609579621 609579769 7.210000e-38 169.0
4 TraesCS2B01G094500 chr2D 83.133 166 15 8 3996 4161 143253516 143253668 5.650000e-29 139.0
5 TraesCS2B01G094500 chr2A 93.247 2947 159 13 1 2921 36055045 36057977 0.000000e+00 4303.0
6 TraesCS2B01G094500 chr2A 89.620 1079 51 16 2957 4005 36057977 36059024 0.000000e+00 1315.0
7 TraesCS2B01G094500 chr2A 89.702 806 63 8 1231 2034 44039618 44038831 0.000000e+00 1011.0
8 TraesCS2B01G094500 chr2A 92.369 249 12 3 3566 3814 44037111 44036870 8.630000e-92 348.0
9 TraesCS2B01G094500 chr2A 96.354 192 6 1 3814 4005 44032701 44032511 8.750000e-82 315.0
10 TraesCS2B01G094500 chr2A 81.429 280 28 7 1098 1377 471011237 471011492 1.530000e-49 207.0
11 TraesCS2B01G094500 chr2A 90.909 110 4 4 3480 3585 36122151 36122258 4.370000e-30 143.0
12 TraesCS2B01G094500 chr6D 91.837 196 16 0 394 589 400556157 400556352 1.490000e-69 274.0
13 TraesCS2B01G094500 chr5A 87.342 158 8 4 4004 4161 39735687 39735832 2.000000e-38 171.0
14 TraesCS2B01G094500 chr5A 85.256 156 11 6 4006 4161 579321412 579321555 2.610000e-32 150.0
15 TraesCS2B01G094500 chrUn 96.000 100 3 1 3487 3585 280375447 280375348 1.210000e-35 161.0
16 TraesCS2B01G094500 chr5B 86.667 150 10 5 4003 4152 566671896 566672035 1.560000e-34 158.0
17 TraesCS2B01G094500 chr6B 86.301 146 9 2 4006 4151 706113267 706113401 9.390000e-32 148.0
18 TraesCS2B01G094500 chr1D 84.049 163 13 8 4005 4167 320585143 320584994 1.210000e-30 145.0
19 TraesCS2B01G094500 chr3D 84.076 157 12 7 4005 4161 492121675 492121818 5.650000e-29 139.0
20 TraesCS2B01G094500 chr4A 83.439 157 14 8 4006 4161 567687146 567687001 7.310000e-28 135.0
21 TraesCS2B01G094500 chr1B 85.870 92 13 0 343 434 561547845 561547754 9.590000e-17 99.0
22 TraesCS2B01G094500 chr1B 84.783 92 14 0 343 434 561546771 561546680 4.460000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G094500 chr2B 54552405 54556597 4192 False 7744.0 7744 100.0000 1 4193 1 chr2B.!!$F1 4192
1 TraesCS2B01G094500 chr2D 32805863 32809855 3992 False 5059.0 5059 89.6880 1 4005 1 chr2D.!!$F1 4004
2 TraesCS2B01G094500 chr2A 36055045 36059024 3979 False 2809.0 4303 91.4335 1 4005 2 chr2A.!!$F3 4004
3 TraesCS2B01G094500 chr2A 44036870 44039618 2748 True 679.5 1011 91.0355 1231 3814 2 chr2A.!!$R2 2583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 890 0.038801 TGCTCACTCACTGAAGCTCG 60.039 55.0 3.46 0.00 0.00 5.03 F
942 946 0.188342 ACATGGAGTTGGGCCAAACT 59.812 50.0 26.25 26.25 43.08 2.66 F
1685 1701 0.366871 CGACGGAGCGTGAGATTTTG 59.633 55.0 0.00 0.00 41.37 2.44 F
2112 2128 0.533531 TGATGCTGCGAGGCTTATGG 60.534 55.0 0.00 0.00 0.00 2.74 F
3073 3761 0.599558 TTCCTCGGTTCCTGTACGTG 59.400 55.0 0.00 0.00 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 1936 0.038801 GCTTGCTCCTTGCCTTTGAC 60.039 55.000 0.0 0.0 42.00 3.18 R
2682 3203 0.248702 GAGTCGGAGTCGCCAGAATC 60.249 60.000 0.0 0.0 40.45 2.52 R
2819 3480 0.250553 CGTACTTGGCAACCCCTTCA 60.251 55.000 0.0 0.0 0.00 3.02 R
3117 3805 0.389817 CGTCATTTCAGCCTCGGACA 60.390 55.000 0.0 0.0 0.00 4.02 R
4042 4796 2.256306 TGTGGGAGCTTAGATGTGACA 58.744 47.619 0.0 0.0 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
271 272 3.925238 CGGCATTGACGCGGTAGC 61.925 66.667 12.47 6.91 40.74 3.58
375 376 4.851214 AGGAGAGCGAGGGAGCCC 62.851 72.222 0.00 0.00 38.01 5.19
816 820 1.000993 GAGCAGGAGGAGGACCAGA 59.999 63.158 0.00 0.00 38.94 3.86
820 824 3.462678 GGAGGAGGACCAGACCGC 61.463 72.222 0.00 0.00 38.94 5.68
886 890 0.038801 TGCTCACTCACTGAAGCTCG 60.039 55.000 3.46 0.00 0.00 5.03
913 917 1.751927 GAGCTGGACTGCAATGGGG 60.752 63.158 0.00 0.00 34.99 4.96
920 924 2.441532 CTGCAATGGGGAGCCAGG 60.442 66.667 0.00 0.00 0.00 4.45
924 928 3.023735 AATGGGGAGCCAGGGGAC 61.024 66.667 0.00 0.00 0.00 4.46
938 942 2.763215 GGACATGGAGTTGGGCCA 59.237 61.111 0.00 0.00 40.24 5.36
942 946 0.188342 ACATGGAGTTGGGCCAAACT 59.812 50.000 26.25 26.25 43.08 2.66
954 958 1.899142 GGCCAAACTCAAAGCCCATAA 59.101 47.619 0.00 0.00 39.60 1.90
989 999 1.762370 AGCCCAACCCAACAAAAAGAG 59.238 47.619 0.00 0.00 0.00 2.85
1377 1390 2.710826 GGAGAGCCTCCCTCCCTCT 61.711 68.421 9.46 0.00 44.36 3.69
1379 1392 3.160748 GAGCCTCCCTCCCTCTGC 61.161 72.222 0.00 0.00 34.35 4.26
1471 1484 3.050275 GCAAGAAGCTTCGCCGGT 61.050 61.111 20.43 0.00 41.15 5.28
1473 1486 1.207593 CAAGAAGCTTCGCCGGTTG 59.792 57.895 20.43 14.65 0.00 3.77
1513 1528 4.904251 CCTTTCCTTCCTATCCAGATCTCA 59.096 45.833 0.00 0.00 0.00 3.27
1527 1542 6.354938 TCCAGATCTCATTGAGAATTTCCAG 58.645 40.000 19.73 8.94 42.27 3.86
1579 1594 1.305381 CCTCCTCCGACTCTGGGTT 60.305 63.158 0.00 0.00 0.00 4.11
1585 1600 0.966920 TCCGACTCTGGGTTCTGAAC 59.033 55.000 12.05 12.05 0.00 3.18
1603 1618 8.348507 GTTCTGAACTTCTGATCTTGTTTTGAT 58.651 33.333 13.13 0.00 0.00 2.57
1658 1674 4.553156 GCAATTTTGTTGGTTGATGCAGTG 60.553 41.667 0.00 0.00 33.00 3.66
1665 1681 1.379044 GTTGATGCAGTGGGGGAGG 60.379 63.158 0.00 0.00 0.00 4.30
1685 1701 0.366871 CGACGGAGCGTGAGATTTTG 59.633 55.000 0.00 0.00 41.37 2.44
1889 1905 1.128692 GAAAGAACAACGGATGCTCGG 59.871 52.381 0.00 0.00 0.00 4.63
1890 1906 0.673644 AAGAACAACGGATGCTCGGG 60.674 55.000 0.00 0.00 0.00 5.14
1908 1924 1.450025 GGTTCCTGAAAAGCCGGTAG 58.550 55.000 1.90 0.00 0.00 3.18
1958 1974 3.085533 AGCTACGTCTTCTCATGTCACT 58.914 45.455 0.00 0.00 0.00 3.41
1998 2014 4.141620 ACCATAACAAGAGCCATCCAGTAG 60.142 45.833 0.00 0.00 0.00 2.57
2000 2016 1.577736 ACAAGAGCCATCCAGTAGCT 58.422 50.000 0.00 0.00 40.24 3.32
2077 2093 6.586082 GTGATTTCACGTTGGCTTTTATTGAT 59.414 34.615 0.00 0.00 37.10 2.57
2112 2128 0.533531 TGATGCTGCGAGGCTTATGG 60.534 55.000 0.00 0.00 0.00 2.74
2248 2494 8.560355 AAAACCTAACATTTTGGCATAAATCC 57.440 30.769 0.00 0.00 0.00 3.01
2315 2561 7.468141 TGAGTTCTATGTGTGATCTACTTGT 57.532 36.000 0.00 0.00 0.00 3.16
2344 2594 9.988815 GATGTTAGGTCATATTGTTACTCTCAT 57.011 33.333 0.00 0.00 0.00 2.90
2414 2664 4.270834 GCGGTGTAGGGATCTCATATCTA 58.729 47.826 0.00 0.00 0.00 1.98
2436 2686 6.946009 TCTATTTTCTCAAAGTAAACCCCTGG 59.054 38.462 0.00 0.00 0.00 4.45
2659 3180 4.797604 GCAGTATTCCTGATCGTATGCTGT 60.798 45.833 12.31 0.00 44.49 4.40
2682 3203 4.581409 TCATCATGTAAATGCAGTGGGATG 59.419 41.667 0.00 0.22 0.00 3.51
2683 3204 4.233632 TCATGTAAATGCAGTGGGATGA 57.766 40.909 0.00 0.00 0.00 2.92
2684 3205 4.795469 TCATGTAAATGCAGTGGGATGAT 58.205 39.130 0.00 0.00 0.00 2.45
2819 3480 5.068460 CGAGATACAAGAGAGAACCCTGATT 59.932 44.000 0.00 0.00 0.00 2.57
2874 3535 5.560378 CGCTCTTACTTTTCACATCGAAAAC 59.440 40.000 0.00 0.00 46.33 2.43
2882 3543 3.667497 TCACATCGAAAACAGAGCTCT 57.333 42.857 11.45 11.45 0.00 4.09
2900 3561 2.693074 CTCTCCTAGAGAAACCTCTGCC 59.307 54.545 5.30 0.00 45.07 4.85
2923 3584 3.136443 TCACTTCTTCCTGATGGTGTGTT 59.864 43.478 0.00 0.00 33.59 3.32
2924 3585 3.499918 CACTTCTTCCTGATGGTGTGTTC 59.500 47.826 0.00 0.00 34.23 3.18
2925 3586 3.136443 ACTTCTTCCTGATGGTGTGTTCA 59.864 43.478 0.00 0.00 34.23 3.18
2926 3587 4.202503 ACTTCTTCCTGATGGTGTGTTCAT 60.203 41.667 0.00 0.00 34.23 2.57
2927 3588 4.371624 TCTTCCTGATGGTGTGTTCATT 57.628 40.909 0.00 0.00 34.23 2.57
2928 3589 4.326826 TCTTCCTGATGGTGTGTTCATTC 58.673 43.478 0.00 0.00 34.23 2.67
2929 3590 3.786368 TCCTGATGGTGTGTTCATTCA 57.214 42.857 0.00 0.00 34.23 2.57
2931 3592 4.665451 TCCTGATGGTGTGTTCATTCATT 58.335 39.130 0.00 0.00 34.23 2.57
2932 3593 4.701651 TCCTGATGGTGTGTTCATTCATTC 59.298 41.667 0.00 0.00 34.23 2.67
2933 3594 4.460034 CCTGATGGTGTGTTCATTCATTCA 59.540 41.667 0.00 0.00 0.00 2.57
2935 3596 6.198650 TGATGGTGTGTTCATTCATTCATC 57.801 37.500 0.00 0.00 32.93 2.92
2936 3597 5.125900 TGATGGTGTGTTCATTCATTCATCC 59.874 40.000 0.00 0.00 32.17 3.51
2940 3601 6.038356 GGTGTGTTCATTCATTCATCCATTC 58.962 40.000 0.00 0.00 0.00 2.67
2941 3602 6.127535 GGTGTGTTCATTCATTCATCCATTCT 60.128 38.462 0.00 0.00 0.00 2.40
2950 3611 9.031360 CATTCATTCATCCATTCTTTCATTCAC 57.969 33.333 0.00 0.00 0.00 3.18
3068 3756 1.553706 ACGTATTCCTCGGTTCCTGT 58.446 50.000 0.00 0.00 0.00 4.00
3069 3757 2.726821 ACGTATTCCTCGGTTCCTGTA 58.273 47.619 0.00 0.00 0.00 2.74
3070 3758 2.424956 ACGTATTCCTCGGTTCCTGTAC 59.575 50.000 0.00 0.00 0.00 2.90
3071 3759 2.540361 CGTATTCCTCGGTTCCTGTACG 60.540 54.545 0.00 0.00 0.00 3.67
3072 3760 1.553706 ATTCCTCGGTTCCTGTACGT 58.446 50.000 0.00 0.00 0.00 3.57
3073 3761 0.599558 TTCCTCGGTTCCTGTACGTG 59.400 55.000 0.00 0.00 0.00 4.49
3074 3762 1.214589 CCTCGGTTCCTGTACGTGG 59.785 63.158 0.00 0.00 35.38 4.94
3075 3763 1.445582 CTCGGTTCCTGTACGTGGC 60.446 63.158 0.00 0.00 0.00 5.01
3076 3764 2.433664 CGGTTCCTGTACGTGGCC 60.434 66.667 0.00 0.00 0.00 5.36
3077 3765 2.046604 GGTTCCTGTACGTGGCCC 60.047 66.667 0.00 0.00 0.00 5.80
3078 3766 2.590114 GGTTCCTGTACGTGGCCCT 61.590 63.158 0.00 0.00 0.00 5.19
3079 3767 1.373812 GTTCCTGTACGTGGCCCTT 59.626 57.895 0.00 0.00 0.00 3.95
3080 3768 0.672711 GTTCCTGTACGTGGCCCTTC 60.673 60.000 0.00 0.00 0.00 3.46
3081 3769 2.125673 CCTGTACGTGGCCCTTCG 60.126 66.667 0.00 5.31 0.00 3.79
3082 3770 2.813908 CTGTACGTGGCCCTTCGC 60.814 66.667 0.00 0.00 0.00 4.70
3083 3771 3.296709 CTGTACGTGGCCCTTCGCT 62.297 63.158 0.00 0.00 37.74 4.93
3084 3772 2.047560 GTACGTGGCCCTTCGCTT 60.048 61.111 0.00 0.00 37.74 4.68
3085 3773 2.098831 GTACGTGGCCCTTCGCTTC 61.099 63.158 0.00 0.00 37.74 3.86
3086 3774 3.636313 TACGTGGCCCTTCGCTTCG 62.636 63.158 0.00 0.00 38.64 3.79
3088 3776 4.699522 GTGGCCCTTCGCTTCGGT 62.700 66.667 0.00 0.00 37.74 4.69
3089 3777 4.697756 TGGCCCTTCGCTTCGGTG 62.698 66.667 0.00 0.00 37.74 4.94
3100 3788 2.022129 CTTCGGTGACACGGTCTGC 61.022 63.158 12.33 0.00 33.15 4.26
3117 3805 2.158385 TCTGCCTTTGGGTTTGTACCAT 60.158 45.455 0.00 0.00 46.96 3.55
3260 3948 3.418675 CGGCACATATAGTAGGCGG 57.581 57.895 0.00 0.00 40.68 6.13
3267 3955 5.043903 GCACATATAGTAGGCGGATGTATG 58.956 45.833 0.00 0.00 0.00 2.39
3367 4057 1.122019 AGGTGTGGTGTGAGGGAGAC 61.122 60.000 0.00 0.00 0.00 3.36
3407 4097 0.618458 TTGTACAGGGAGATGTGGGC 59.382 55.000 0.00 0.00 34.56 5.36
3408 4098 0.546507 TGTACAGGGAGATGTGGGCA 60.547 55.000 0.00 0.00 34.56 5.36
3431 4121 3.303049 TCTCTGCTAGCCATGATCTGAA 58.697 45.455 13.29 0.00 0.00 3.02
3461 4155 7.827701 TCTGTAAGTAACTAACTGATGAGGTG 58.172 38.462 0.00 0.00 38.88 4.00
3484 4178 7.389607 GGTGTGTGATTATGATGATGATGATGA 59.610 37.037 0.00 0.00 0.00 2.92
3485 4179 8.947115 GTGTGTGATTATGATGATGATGATGAT 58.053 33.333 0.00 0.00 0.00 2.45
3751 4499 0.627451 AGCATGAGAAAGGGATGGCA 59.373 50.000 0.00 0.00 0.00 4.92
3783 4531 0.461516 AGCTGAGGACGCATGTGATG 60.462 55.000 14.43 0.00 0.00 3.07
3802 4556 6.037940 TGTGATGTATACCTTACGTCTCTGTC 59.962 42.308 0.00 0.00 35.20 3.51
3923 4677 4.929211 GCCGCAGAAGGAAAATAAATTTGT 59.071 37.500 0.00 0.00 0.00 2.83
3977 4731 9.956720 GTCCAAAATCAATGATTCTGTAATAGG 57.043 33.333 9.11 3.50 30.29 2.57
4005 4759 1.394917 CTGCGTGGCTGATTCTGTAAC 59.605 52.381 0.00 0.00 0.00 2.50
4006 4760 1.270571 TGCGTGGCTGATTCTGTAACA 60.271 47.619 0.00 0.00 0.00 2.41
4007 4761 1.394917 GCGTGGCTGATTCTGTAACAG 59.605 52.381 0.00 0.00 35.14 3.16
4008 4762 2.688507 CGTGGCTGATTCTGTAACAGT 58.311 47.619 0.00 0.00 34.60 3.55
4009 4763 3.067106 CGTGGCTGATTCTGTAACAGTT 58.933 45.455 0.00 0.00 34.60 3.16
4010 4764 3.498397 CGTGGCTGATTCTGTAACAGTTT 59.502 43.478 0.00 0.00 34.60 2.66
4011 4765 4.688879 CGTGGCTGATTCTGTAACAGTTTA 59.311 41.667 0.00 0.00 34.60 2.01
4012 4766 5.351465 CGTGGCTGATTCTGTAACAGTTTAT 59.649 40.000 0.00 0.00 34.60 1.40
4013 4767 6.455646 CGTGGCTGATTCTGTAACAGTTTATC 60.456 42.308 0.00 0.00 34.60 1.75
4014 4768 6.595716 GTGGCTGATTCTGTAACAGTTTATCT 59.404 38.462 0.00 0.00 34.60 1.98
4015 4769 7.764443 GTGGCTGATTCTGTAACAGTTTATCTA 59.236 37.037 0.00 0.00 34.60 1.98
4016 4770 8.318412 TGGCTGATTCTGTAACAGTTTATCTAA 58.682 33.333 0.00 0.00 34.60 2.10
4017 4771 9.331282 GGCTGATTCTGTAACAGTTTATCTAAT 57.669 33.333 0.00 0.00 34.60 1.73
4057 4811 7.792374 TTTTATGGATGTCACATCTAAGCTC 57.208 36.000 17.46 0.29 0.00 4.09
4058 4812 3.827008 TGGATGTCACATCTAAGCTCC 57.173 47.619 17.46 0.88 0.00 4.70
4059 4813 2.435805 TGGATGTCACATCTAAGCTCCC 59.564 50.000 17.46 0.00 0.00 4.30
4060 4814 2.435805 GGATGTCACATCTAAGCTCCCA 59.564 50.000 17.46 0.00 0.00 4.37
4061 4815 3.462021 GATGTCACATCTAAGCTCCCAC 58.538 50.000 10.81 0.00 0.00 4.61
4062 4816 2.256306 TGTCACATCTAAGCTCCCACA 58.744 47.619 0.00 0.00 0.00 4.17
4063 4817 2.637382 TGTCACATCTAAGCTCCCACAA 59.363 45.455 0.00 0.00 0.00 3.33
4064 4818 3.072330 TGTCACATCTAAGCTCCCACAAA 59.928 43.478 0.00 0.00 0.00 2.83
4065 4819 4.263462 TGTCACATCTAAGCTCCCACAAAT 60.263 41.667 0.00 0.00 0.00 2.32
4066 4820 5.045942 TGTCACATCTAAGCTCCCACAAATA 60.046 40.000 0.00 0.00 0.00 1.40
4067 4821 6.058183 GTCACATCTAAGCTCCCACAAATAT 58.942 40.000 0.00 0.00 0.00 1.28
4068 4822 7.147567 TGTCACATCTAAGCTCCCACAAATATA 60.148 37.037 0.00 0.00 0.00 0.86
4069 4823 7.880195 GTCACATCTAAGCTCCCACAAATATAT 59.120 37.037 0.00 0.00 0.00 0.86
4070 4824 9.100197 TCACATCTAAGCTCCCACAAATATATA 57.900 33.333 0.00 0.00 0.00 0.86
4071 4825 9.725019 CACATCTAAGCTCCCACAAATATATAA 57.275 33.333 0.00 0.00 0.00 0.98
4077 4831 8.567285 AAGCTCCCACAAATATATAATACAGC 57.433 34.615 0.00 0.00 0.00 4.40
4078 4832 7.689299 AGCTCCCACAAATATATAATACAGCA 58.311 34.615 0.00 0.00 0.00 4.41
4079 4833 8.163408 AGCTCCCACAAATATATAATACAGCAA 58.837 33.333 0.00 0.00 0.00 3.91
4080 4834 8.237267 GCTCCCACAAATATATAATACAGCAAC 58.763 37.037 0.00 0.00 0.00 4.17
4081 4835 9.283768 CTCCCACAAATATATAATACAGCAACA 57.716 33.333 0.00 0.00 0.00 3.33
4082 4836 9.634021 TCCCACAAATATATAATACAGCAACAA 57.366 29.630 0.00 0.00 0.00 2.83
4083 4837 9.897744 CCCACAAATATATAATACAGCAACAAG 57.102 33.333 0.00 0.00 0.00 3.16
4093 4847 6.885735 AATACAGCAACAAGAAACAACAAC 57.114 33.333 0.00 0.00 0.00 3.32
4094 4848 4.250116 ACAGCAACAAGAAACAACAACA 57.750 36.364 0.00 0.00 0.00 3.33
4095 4849 4.626042 ACAGCAACAAGAAACAACAACAA 58.374 34.783 0.00 0.00 0.00 2.83
4096 4850 4.447389 ACAGCAACAAGAAACAACAACAAC 59.553 37.500 0.00 0.00 0.00 3.32
4097 4851 4.447054 CAGCAACAAGAAACAACAACAACA 59.553 37.500 0.00 0.00 0.00 3.33
4098 4852 5.050499 CAGCAACAAGAAACAACAACAACAA 60.050 36.000 0.00 0.00 0.00 2.83
4099 4853 5.525378 AGCAACAAGAAACAACAACAACAAA 59.475 32.000 0.00 0.00 0.00 2.83
4100 4854 6.037610 AGCAACAAGAAACAACAACAACAAAA 59.962 30.769 0.00 0.00 0.00 2.44
4101 4855 6.688813 GCAACAAGAAACAACAACAACAAAAA 59.311 30.769 0.00 0.00 0.00 1.94
4149 4903 3.374745 CACAAACAAAGTGGACATCAGC 58.625 45.455 0.00 0.00 33.43 4.26
4150 4904 3.067180 CACAAACAAAGTGGACATCAGCT 59.933 43.478 0.00 0.00 33.43 4.24
4151 4905 3.701040 ACAAACAAAGTGGACATCAGCTT 59.299 39.130 0.00 0.00 0.00 3.74
4152 4906 4.202050 ACAAACAAAGTGGACATCAGCTTC 60.202 41.667 0.00 0.00 0.00 3.86
4153 4907 3.498774 ACAAAGTGGACATCAGCTTCT 57.501 42.857 0.00 0.00 0.00 2.85
4154 4908 4.623932 ACAAAGTGGACATCAGCTTCTA 57.376 40.909 0.00 0.00 0.00 2.10
4155 4909 4.573900 ACAAAGTGGACATCAGCTTCTAG 58.426 43.478 0.00 0.00 0.00 2.43
4156 4910 4.284490 ACAAAGTGGACATCAGCTTCTAGA 59.716 41.667 0.00 0.00 0.00 2.43
4157 4911 5.046014 ACAAAGTGGACATCAGCTTCTAGAT 60.046 40.000 0.00 0.00 0.00 1.98
4158 4912 4.669206 AGTGGACATCAGCTTCTAGATG 57.331 45.455 9.58 9.58 45.44 2.90
4164 4918 4.669206 CATCAGCTTCTAGATGTGTCCT 57.331 45.455 7.41 0.00 37.45 3.85
4165 4919 5.781210 CATCAGCTTCTAGATGTGTCCTA 57.219 43.478 7.41 0.00 37.45 2.94
4166 4920 5.771469 CATCAGCTTCTAGATGTGTCCTAG 58.229 45.833 7.41 0.00 37.45 3.02
4167 4921 5.117406 TCAGCTTCTAGATGTGTCCTAGA 57.883 43.478 7.41 0.00 40.40 2.43
4168 4922 4.884744 TCAGCTTCTAGATGTGTCCTAGAC 59.115 45.833 7.41 0.00 41.44 2.59
4169 4923 4.642437 CAGCTTCTAGATGTGTCCTAGACA 59.358 45.833 7.41 0.00 41.44 3.41
4170 4924 4.887071 AGCTTCTAGATGTGTCCTAGACAG 59.113 45.833 7.41 0.00 43.57 3.51
4171 4925 4.037446 GCTTCTAGATGTGTCCTAGACAGG 59.963 50.000 7.41 0.00 43.57 4.00
4172 4926 3.556999 TCTAGATGTGTCCTAGACAGGC 58.443 50.000 0.00 0.00 43.57 4.85
4173 4927 1.490574 AGATGTGTCCTAGACAGGCC 58.509 55.000 0.00 0.00 43.57 5.19
4174 4928 0.466124 GATGTGTCCTAGACAGGCCC 59.534 60.000 0.00 0.00 43.57 5.80
4175 4929 0.252696 ATGTGTCCTAGACAGGCCCA 60.253 55.000 0.00 0.00 43.57 5.36
4176 4930 0.252696 TGTGTCCTAGACAGGCCCAT 60.253 55.000 0.00 0.00 43.57 4.00
4177 4931 0.912486 GTGTCCTAGACAGGCCCATT 59.088 55.000 0.00 0.00 43.57 3.16
4178 4932 2.116238 GTGTCCTAGACAGGCCCATTA 58.884 52.381 0.00 0.00 43.57 1.90
4179 4933 2.706190 GTGTCCTAGACAGGCCCATTAT 59.294 50.000 0.00 0.00 43.57 1.28
4180 4934 2.705658 TGTCCTAGACAGGCCCATTATG 59.294 50.000 0.00 0.00 42.30 1.90
4181 4935 2.706190 GTCCTAGACAGGCCCATTATGT 59.294 50.000 0.00 0.00 42.30 2.29
4182 4936 3.901844 GTCCTAGACAGGCCCATTATGTA 59.098 47.826 0.00 0.00 42.30 2.29
4183 4937 4.347000 GTCCTAGACAGGCCCATTATGTAA 59.653 45.833 0.00 0.00 42.30 2.41
4184 4938 5.013183 GTCCTAGACAGGCCCATTATGTAAT 59.987 44.000 0.00 0.00 42.30 1.89
4185 4939 5.013079 TCCTAGACAGGCCCATTATGTAATG 59.987 44.000 0.00 5.90 42.30 1.90
4186 4940 5.013079 CCTAGACAGGCCCATTATGTAATGA 59.987 44.000 13.01 0.00 39.24 2.57
4187 4941 5.387113 AGACAGGCCCATTATGTAATGAA 57.613 39.130 13.01 0.00 44.40 2.57
4188 4942 5.765510 AGACAGGCCCATTATGTAATGAAA 58.234 37.500 13.01 0.00 44.40 2.69
4189 4943 5.829924 AGACAGGCCCATTATGTAATGAAAG 59.170 40.000 13.01 4.42 44.40 2.62
4190 4944 5.765510 ACAGGCCCATTATGTAATGAAAGA 58.234 37.500 13.01 0.00 44.40 2.52
4191 4945 6.376248 ACAGGCCCATTATGTAATGAAAGAT 58.624 36.000 13.01 0.00 44.40 2.40
4192 4946 6.840705 ACAGGCCCATTATGTAATGAAAGATT 59.159 34.615 13.01 0.00 44.40 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.376037 CCAGCGGTTCAACCTCTCC 60.376 63.158 4.68 0.00 29.27 3.71
30 31 1.949257 CAACCAGCGGTTCAACCTC 59.051 57.895 4.68 0.00 43.05 3.85
454 455 3.050275 GGCCTCTCGTGCAACCAC 61.050 66.667 0.00 0.00 38.62 4.16
671 672 1.473965 CCAATGTCTCCATCTCACCGG 60.474 57.143 0.00 0.00 0.00 5.28
672 673 1.482182 TCCAATGTCTCCATCTCACCG 59.518 52.381 0.00 0.00 0.00 4.94
675 676 2.768527 GGACTCCAATGTCTCCATCTCA 59.231 50.000 0.00 0.00 37.16 3.27
801 802 2.055042 CGGTCTGGTCCTCCTCCTG 61.055 68.421 0.00 0.00 34.23 3.86
886 890 2.359230 GTCCAGCTCAGTGGCACC 60.359 66.667 15.27 0.00 37.53 5.01
913 917 1.566298 AACTCCATGTCCCCTGGCTC 61.566 60.000 0.00 0.00 33.56 4.70
920 924 2.043953 GGCCCAACTCCATGTCCC 60.044 66.667 0.00 0.00 0.00 4.46
924 928 0.890683 GAGTTTGGCCCAACTCCATG 59.109 55.000 30.64 0.00 32.92 3.66
938 942 3.165071 CCTGGTTATGGGCTTTGAGTTT 58.835 45.455 0.00 0.00 0.00 2.66
942 946 0.324275 GGCCTGGTTATGGGCTTTGA 60.324 55.000 0.00 0.00 46.80 2.69
989 999 2.187946 CCACCATCTCGCTCCCAC 59.812 66.667 0.00 0.00 0.00 4.61
1446 1459 0.451792 GAAGCTTCTTGCGCTTGTCG 60.452 55.000 19.44 0.00 46.85 4.35
1488 1501 2.776665 TCTGGATAGGAAGGAAAGGGG 58.223 52.381 0.00 0.00 0.00 4.79
1513 1528 9.476928 AAATTCTGAGATCTGGAAATTCTCAAT 57.523 29.630 0.00 0.00 43.76 2.57
1527 1542 4.785301 TGACCCATGGAAATTCTGAGATC 58.215 43.478 15.22 0.00 0.00 2.75
1579 1594 9.730705 ATATCAAAACAAGATCAGAAGTTCAGA 57.269 29.630 5.50 2.64 0.00 3.27
1628 1644 5.411781 TCAACCAACAAAATTGCGTTACTT 58.588 33.333 0.00 0.00 0.00 2.24
1630 1646 5.665232 CATCAACCAACAAAATTGCGTTAC 58.335 37.500 0.00 0.00 0.00 2.50
1665 1681 1.352156 AAAATCTCACGCTCCGTCGC 61.352 55.000 0.00 0.00 38.32 5.19
1685 1701 1.953231 GATCTTGCCCAAGCTTGCCC 61.953 60.000 21.43 13.50 40.80 5.36
1757 1773 4.072913 CGATCACCCTCGTTCGTG 57.927 61.111 0.00 0.00 34.00 4.35
1889 1905 1.450025 CTACCGGCTTTTCAGGAACC 58.550 55.000 0.00 0.00 33.91 3.62
1890 1906 0.803117 GCTACCGGCTTTTCAGGAAC 59.197 55.000 0.00 0.00 38.06 3.62
1908 1924 1.728426 CTTTGACTGCTGCGCTTGC 60.728 57.895 9.73 14.07 39.78 4.01
1920 1936 0.038801 GCTTGCTCCTTGCCTTTGAC 60.039 55.000 0.00 0.00 42.00 3.18
1958 1974 4.980592 TCAGGGGCAGCCTGTCCA 62.981 66.667 18.72 0.00 45.98 4.02
1998 2014 3.897141 AAGACTAGGCTTAGAACCAGC 57.103 47.619 9.80 0.00 36.45 4.85
2000 2016 5.525484 TCCATAAGACTAGGCTTAGAACCA 58.475 41.667 22.30 1.26 34.16 3.67
2062 2078 8.810652 TTAACAGAACATCAATAAAAGCCAAC 57.189 30.769 0.00 0.00 0.00 3.77
2077 2093 5.122869 GCAGCATCAGATCTTTAACAGAACA 59.877 40.000 0.00 0.00 34.16 3.18
2092 2108 0.866427 CATAAGCCTCGCAGCATCAG 59.134 55.000 0.00 0.00 34.23 2.90
2138 2382 5.180868 AGTTGCTAGAAGCTGAGTGAAATTG 59.819 40.000 0.00 0.00 42.97 2.32
2229 2475 7.473735 TGACAGGATTTATGCCAAAATGTTA 57.526 32.000 0.00 0.00 0.00 2.41
2238 2484 8.621532 TGAATAACTATGACAGGATTTATGCC 57.378 34.615 0.00 0.00 0.00 4.40
2266 2512 6.540438 TCCTCCTGTACGATCAAACTTATT 57.460 37.500 0.00 0.00 0.00 1.40
2278 2524 5.067936 ACATAGAACTCATTCCTCCTGTACG 59.932 44.000 0.00 0.00 35.18 3.67
2344 2594 7.112122 AGGAGCATGACATATTAACAAAGTGA 58.888 34.615 0.00 0.00 0.00 3.41
2394 2644 9.041354 AGAAAATAGATATGAGATCCCTACACC 57.959 37.037 0.00 0.00 0.00 4.16
2414 2664 5.464069 ACCAGGGGTTTACTTTGAGAAAAT 58.536 37.500 0.00 0.00 27.29 1.82
2478 2750 4.386049 GTCTGTAACTCAAATCTGTGGTCG 59.614 45.833 0.00 0.00 0.00 4.79
2659 3180 4.233632 TCCCACTGCATTTACATGATGA 57.766 40.909 0.00 0.00 31.07 2.92
2682 3203 0.248702 GAGTCGGAGTCGCCAGAATC 60.249 60.000 0.00 0.00 40.45 2.52
2683 3204 0.681564 AGAGTCGGAGTCGCCAGAAT 60.682 55.000 7.17 0.00 35.94 2.40
2684 3205 1.303398 AGAGTCGGAGTCGCCAGAA 60.303 57.895 7.17 0.00 35.94 3.02
2734 3395 3.198872 GGCCTCATCTTCCTTTCGTAAG 58.801 50.000 0.00 0.00 0.00 2.34
2772 3433 5.231991 CGGTCCATTTCTTTCTTGTTTTGTG 59.768 40.000 0.00 0.00 0.00 3.33
2819 3480 0.250553 CGTACTTGGCAACCCCTTCA 60.251 55.000 0.00 0.00 0.00 3.02
2830 3491 2.729467 CGAGAGAAGACAGCGTACTTGG 60.729 54.545 0.00 0.00 0.00 3.61
2874 3535 3.631250 AGGTTTCTCTAGGAGAGCTCTG 58.369 50.000 23.91 6.72 42.04 3.35
2900 3561 3.244353 ACACACCATCAGGAAGAAGTGAG 60.244 47.826 0.00 0.00 37.76 3.51
2923 3584 8.973182 TGAATGAAAGAATGGATGAATGAATGA 58.027 29.630 0.00 0.00 0.00 2.57
2924 3585 9.031360 GTGAATGAAAGAATGGATGAATGAATG 57.969 33.333 0.00 0.00 0.00 2.67
2925 3586 8.978472 AGTGAATGAAAGAATGGATGAATGAAT 58.022 29.630 0.00 0.00 0.00 2.57
2926 3587 8.357290 AGTGAATGAAAGAATGGATGAATGAA 57.643 30.769 0.00 0.00 0.00 2.57
2927 3588 7.612633 TGAGTGAATGAAAGAATGGATGAATGA 59.387 33.333 0.00 0.00 0.00 2.57
2928 3589 7.768240 TGAGTGAATGAAAGAATGGATGAATG 58.232 34.615 0.00 0.00 0.00 2.67
2929 3590 7.949690 TGAGTGAATGAAAGAATGGATGAAT 57.050 32.000 0.00 0.00 0.00 2.57
2950 3611 6.149640 AGCAGCAGCAGATGAAATTATATGAG 59.850 38.462 3.17 0.00 45.49 2.90
2958 3619 2.124277 TCAGCAGCAGCAGATGAAAT 57.876 45.000 2.83 0.00 45.49 2.17
2963 3624 0.907486 TACCTTCAGCAGCAGCAGAT 59.093 50.000 3.17 0.00 45.49 2.90
3059 3723 2.433664 GGCCACGTACAGGAACCG 60.434 66.667 0.00 0.00 0.00 4.44
3064 3728 2.125673 CGAAGGGCCACGTACAGG 60.126 66.667 6.18 0.00 0.00 4.00
3068 3756 2.263540 GAAGCGAAGGGCCACGTA 59.736 61.111 20.37 0.00 45.17 3.57
3071 3759 4.699522 ACCGAAGCGAAGGGCCAC 62.700 66.667 6.18 0.00 45.17 5.01
3072 3760 4.697756 CACCGAAGCGAAGGGCCA 62.698 66.667 6.18 0.00 45.17 5.36
3073 3761 4.388499 TCACCGAAGCGAAGGGCC 62.388 66.667 0.00 0.00 45.17 5.80
3074 3762 3.119096 GTCACCGAAGCGAAGGGC 61.119 66.667 0.00 0.00 44.05 5.19
3075 3763 2.027625 GTGTCACCGAAGCGAAGGG 61.028 63.158 0.00 0.00 0.00 3.95
3076 3764 2.372690 CGTGTCACCGAAGCGAAGG 61.373 63.158 0.00 0.00 0.00 3.46
3077 3765 2.372690 CCGTGTCACCGAAGCGAAG 61.373 63.158 0.00 0.00 0.00 3.79
3078 3766 2.355363 CCGTGTCACCGAAGCGAA 60.355 61.111 0.00 0.00 0.00 4.70
3079 3767 3.547249 GACCGTGTCACCGAAGCGA 62.547 63.158 0.00 0.00 32.09 4.93
3080 3768 3.103911 GACCGTGTCACCGAAGCG 61.104 66.667 0.00 0.00 32.09 4.68
3081 3769 2.022129 CAGACCGTGTCACCGAAGC 61.022 63.158 0.00 0.00 34.60 3.86
3082 3770 2.022129 GCAGACCGTGTCACCGAAG 61.022 63.158 0.00 0.00 34.60 3.79
3083 3771 2.028484 GCAGACCGTGTCACCGAA 59.972 61.111 0.00 0.00 34.60 4.30
3084 3772 3.986006 GGCAGACCGTGTCACCGA 61.986 66.667 0.00 0.00 34.60 4.69
3085 3773 2.989055 AAAGGCAGACCGTGTCACCG 62.989 60.000 0.00 0.00 42.76 4.94
3086 3774 1.227853 AAAGGCAGACCGTGTCACC 60.228 57.895 0.00 7.21 42.76 4.02
3087 3775 1.507141 CCAAAGGCAGACCGTGTCAC 61.507 60.000 6.78 0.00 42.76 3.67
3088 3776 1.227823 CCAAAGGCAGACCGTGTCA 60.228 57.895 6.78 0.00 42.76 3.58
3089 3777 1.966451 CCCAAAGGCAGACCGTGTC 60.966 63.158 0.00 0.00 42.76 3.67
3117 3805 0.389817 CGTCATTTCAGCCTCGGACA 60.390 55.000 0.00 0.00 0.00 4.02
3260 3948 6.796426 TGCCGCTCTATAATCTACATACATC 58.204 40.000 0.00 0.00 0.00 3.06
3267 3955 5.622378 GCAATTTGCCGCTCTATAATCTAC 58.378 41.667 10.34 0.00 37.42 2.59
3367 4057 2.203538 AAAGGTGCTGTGCTGGGG 60.204 61.111 0.00 0.00 0.00 4.96
3407 4097 3.997681 CAGATCATGGCTAGCAGAGATTG 59.002 47.826 18.24 11.78 0.00 2.67
3408 4098 3.902467 TCAGATCATGGCTAGCAGAGATT 59.098 43.478 18.24 4.68 0.00 2.40
3431 4121 9.298250 TCATCAGTTAGTTACTTACAGAGAACT 57.702 33.333 4.34 0.00 33.85 3.01
3461 4155 7.910683 GCATCATCATCATCATCATAATCACAC 59.089 37.037 0.00 0.00 0.00 3.82
3693 4441 6.976925 GCATCCACGTACAGTATTAACTAAGT 59.023 38.462 0.00 0.00 33.48 2.24
3751 4499 1.141254 CCTCAGCTCTCTCATGCCATT 59.859 52.381 0.00 0.00 0.00 3.16
3783 4531 6.434018 AACAGACAGAGACGTAAGGTATAC 57.566 41.667 0.00 0.00 46.39 1.47
3802 4556 5.173774 ACTGTAACAACATGAGCAAACAG 57.826 39.130 0.00 9.87 39.14 3.16
3923 4677 8.546244 CACATGCATACACAAACAAACATAAAA 58.454 29.630 0.00 0.00 0.00 1.52
4032 4786 7.283127 GGAGCTTAGATGTGACATCCATAAAAA 59.717 37.037 21.05 6.46 0.00 1.94
4033 4787 6.767902 GGAGCTTAGATGTGACATCCATAAAA 59.232 38.462 21.05 8.00 0.00 1.52
4034 4788 6.291377 GGAGCTTAGATGTGACATCCATAAA 58.709 40.000 21.05 10.18 0.00 1.40
4035 4789 5.221722 GGGAGCTTAGATGTGACATCCATAA 60.222 44.000 21.05 13.11 0.00 1.90
4036 4790 4.284490 GGGAGCTTAGATGTGACATCCATA 59.716 45.833 21.05 6.22 0.00 2.74
4037 4791 3.072184 GGGAGCTTAGATGTGACATCCAT 59.928 47.826 21.05 7.22 0.00 3.41
4038 4792 2.435805 GGGAGCTTAGATGTGACATCCA 59.564 50.000 21.05 5.72 0.00 3.41
4039 4793 2.435805 TGGGAGCTTAGATGTGACATCC 59.564 50.000 21.05 6.28 0.00 3.51
4040 4794 3.118629 TGTGGGAGCTTAGATGTGACATC 60.119 47.826 17.46 17.46 0.00 3.06
4041 4795 2.840038 TGTGGGAGCTTAGATGTGACAT 59.160 45.455 0.00 0.00 0.00 3.06
4042 4796 2.256306 TGTGGGAGCTTAGATGTGACA 58.744 47.619 0.00 0.00 0.00 3.58
4043 4797 3.334583 TTGTGGGAGCTTAGATGTGAC 57.665 47.619 0.00 0.00 0.00 3.67
4044 4798 4.574674 ATTTGTGGGAGCTTAGATGTGA 57.425 40.909 0.00 0.00 0.00 3.58
4045 4799 9.725019 TTATATATTTGTGGGAGCTTAGATGTG 57.275 33.333 0.00 0.00 0.00 3.21
4051 4805 9.667107 GCTGTATTATATATTTGTGGGAGCTTA 57.333 33.333 0.00 0.00 0.00 3.09
4052 4806 8.163408 TGCTGTATTATATATTTGTGGGAGCTT 58.837 33.333 0.00 0.00 0.00 3.74
4053 4807 7.689299 TGCTGTATTATATATTTGTGGGAGCT 58.311 34.615 0.00 0.00 0.00 4.09
4054 4808 7.921786 TGCTGTATTATATATTTGTGGGAGC 57.078 36.000 0.00 0.00 0.00 4.70
4055 4809 9.283768 TGTTGCTGTATTATATATTTGTGGGAG 57.716 33.333 0.00 0.00 0.00 4.30
4056 4810 9.634021 TTGTTGCTGTATTATATATTTGTGGGA 57.366 29.630 0.00 0.00 0.00 4.37
4057 4811 9.897744 CTTGTTGCTGTATTATATATTTGTGGG 57.102 33.333 0.00 0.00 0.00 4.61
4067 4821 9.672086 GTTGTTGTTTCTTGTTGCTGTATTATA 57.328 29.630 0.00 0.00 0.00 0.98
4068 4822 8.194104 TGTTGTTGTTTCTTGTTGCTGTATTAT 58.806 29.630 0.00 0.00 0.00 1.28
4069 4823 7.539436 TGTTGTTGTTTCTTGTTGCTGTATTA 58.461 30.769 0.00 0.00 0.00 0.98
4070 4824 6.393990 TGTTGTTGTTTCTTGTTGCTGTATT 58.606 32.000 0.00 0.00 0.00 1.89
4071 4825 5.960113 TGTTGTTGTTTCTTGTTGCTGTAT 58.040 33.333 0.00 0.00 0.00 2.29
4072 4826 5.378292 TGTTGTTGTTTCTTGTTGCTGTA 57.622 34.783 0.00 0.00 0.00 2.74
4073 4827 4.250116 TGTTGTTGTTTCTTGTTGCTGT 57.750 36.364 0.00 0.00 0.00 4.40
4074 4828 4.447054 TGTTGTTGTTGTTTCTTGTTGCTG 59.553 37.500 0.00 0.00 0.00 4.41
4075 4829 4.626042 TGTTGTTGTTGTTTCTTGTTGCT 58.374 34.783 0.00 0.00 0.00 3.91
4076 4830 4.981389 TGTTGTTGTTGTTTCTTGTTGC 57.019 36.364 0.00 0.00 0.00 4.17
4128 4882 3.067180 AGCTGATGTCCACTTTGTTTGTG 59.933 43.478 0.00 0.00 35.39 3.33
4129 4883 3.290710 AGCTGATGTCCACTTTGTTTGT 58.709 40.909 0.00 0.00 0.00 2.83
4130 4884 3.996150 AGCTGATGTCCACTTTGTTTG 57.004 42.857 0.00 0.00 0.00 2.93
4131 4885 4.210331 AGAAGCTGATGTCCACTTTGTTT 58.790 39.130 0.00 0.00 0.00 2.83
4132 4886 3.825328 AGAAGCTGATGTCCACTTTGTT 58.175 40.909 0.00 0.00 0.00 2.83
4133 4887 3.498774 AGAAGCTGATGTCCACTTTGT 57.501 42.857 0.00 0.00 0.00 2.83
4134 4888 4.825422 TCTAGAAGCTGATGTCCACTTTG 58.175 43.478 0.00 0.00 0.00 2.77
4135 4889 5.426504 CATCTAGAAGCTGATGTCCACTTT 58.573 41.667 0.00 0.00 36.32 2.66
4136 4890 5.021033 CATCTAGAAGCTGATGTCCACTT 57.979 43.478 0.00 0.00 36.32 3.16
4137 4891 4.669206 CATCTAGAAGCTGATGTCCACT 57.331 45.455 0.00 0.00 36.32 4.00
4143 4897 4.669206 AGGACACATCTAGAAGCTGATG 57.331 45.455 9.58 9.58 43.90 3.07
4144 4898 5.534654 GTCTAGGACACATCTAGAAGCTGAT 59.465 44.000 0.00 0.00 43.09 2.90
4145 4899 4.884744 GTCTAGGACACATCTAGAAGCTGA 59.115 45.833 0.00 0.00 43.09 4.26
4146 4900 4.642437 TGTCTAGGACACATCTAGAAGCTG 59.358 45.833 0.00 0.00 43.09 4.24
4147 4901 4.861196 TGTCTAGGACACATCTAGAAGCT 58.139 43.478 0.00 0.00 43.09 3.74
4148 4902 5.181690 CTGTCTAGGACACATCTAGAAGC 57.818 47.826 0.00 0.00 43.09 3.86
4161 4915 5.013079 CATTACATAATGGGCCTGTCTAGGA 59.987 44.000 4.53 0.00 41.53 2.94
4162 4916 5.013079 TCATTACATAATGGGCCTGTCTAGG 59.987 44.000 4.53 0.00 43.42 3.02
4163 4917 6.114187 TCATTACATAATGGGCCTGTCTAG 57.886 41.667 4.53 0.00 42.46 2.43
4164 4918 6.508030 TTCATTACATAATGGGCCTGTCTA 57.492 37.500 4.53 0.00 42.46 2.59
4165 4919 5.387113 TTCATTACATAATGGGCCTGTCT 57.613 39.130 4.53 0.00 42.46 3.41
4166 4920 5.827797 TCTTTCATTACATAATGGGCCTGTC 59.172 40.000 4.53 0.00 42.46 3.51
4167 4921 5.765510 TCTTTCATTACATAATGGGCCTGT 58.234 37.500 4.53 2.77 42.46 4.00
4168 4922 6.906157 ATCTTTCATTACATAATGGGCCTG 57.094 37.500 4.53 0.00 42.46 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.