Multiple sequence alignment - TraesCS2B01G094400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G094400 chr2B 100.000 4953 0 0 1 4953 54554259 54549307 0.000000e+00 9147.0
1 TraesCS2B01G094400 chr2B 88.843 242 22 2 1267 1508 382946890 382947126 4.850000e-75 292.0
2 TraesCS2B01G094400 chr2B 94.253 87 5 0 4424 4510 525815657 525815571 3.110000e-27 134.0
3 TraesCS2B01G094400 chr2B 93.182 88 5 1 4425 4511 782683940 782683853 1.450000e-25 128.0
4 TraesCS2B01G094400 chr2A 93.247 3569 185 26 1 3549 36056897 36053365 0.000000e+00 5204.0
5 TraesCS2B01G094400 chr2A 94.745 609 29 3 3819 4427 36053046 36052441 0.000000e+00 944.0
6 TraesCS2B01G094400 chr2A 88.676 627 51 10 1 625 44039010 44039618 0.000000e+00 747.0
7 TraesCS2B01G094400 chr2A 95.302 447 20 1 4508 4953 36052443 36051997 0.000000e+00 708.0
8 TraesCS2B01G094400 chr2A 81.429 280 28 7 479 758 471011492 471011237 1.810000e-49 207.0
9 TraesCS2B01G094400 chr2D 93.194 3497 166 19 1 3484 32807710 32804273 0.000000e+00 5073.0
10 TraesCS2B01G094400 chr2D 89.394 792 69 11 3642 4427 32803968 32803186 0.000000e+00 983.0
11 TraesCS2B01G094400 chr2D 88.345 429 40 7 4527 4953 32803133 32802713 1.590000e-139 507.0
12 TraesCS2B01G094400 chr4D 76.958 881 170 25 2440 3314 349190359 349189506 5.800000e-129 472.0
13 TraesCS2B01G094400 chr4D 75.000 868 177 33 2453 3309 630162 631000 1.010000e-96 364.0
14 TraesCS2B01G094400 chr4A 76.941 876 167 27 2440 3308 115788280 115789127 2.700000e-127 466.0
15 TraesCS2B01G094400 chr4A 75.087 867 181 29 2453 3309 900692 901533 6.060000e-99 372.0
16 TraesCS2B01G094400 chr4A 92.135 89 6 1 4422 4509 607266505 607266593 1.870000e-24 124.0
17 TraesCS2B01G094400 chr4B 76.742 890 169 29 2440 3321 431796128 431795269 3.490000e-126 462.0
18 TraesCS2B01G094400 chr4B 75.346 868 174 33 2453 3309 1244561 1243723 1.010000e-101 381.0
19 TraesCS2B01G094400 chr5B 75.031 797 159 32 2527 3313 515185778 515186544 2.860000e-87 333.0
20 TraesCS2B01G094400 chr5B 92.222 90 6 1 4424 4512 45261721 45261632 5.210000e-25 126.0
21 TraesCS2B01G094400 chr5B 91.304 92 7 1 4424 4514 676928190 676928099 1.870000e-24 124.0
22 TraesCS2B01G094400 chr5D 74.408 844 176 32 2480 3313 425840560 425841373 4.780000e-85 326.0
23 TraesCS2B01G094400 chr5A 74.408 844 176 32 2480 3313 540053618 540054431 4.780000e-85 326.0
24 TraesCS2B01G094400 chr6D 91.837 196 16 0 1267 1462 400556352 400556157 1.760000e-69 274.0
25 TraesCS2B01G094400 chr7B 82.258 248 21 16 3391 3635 19203129 19203356 5.060000e-45 193.0
26 TraesCS2B01G094400 chr7B 90.426 94 8 1 4417 4509 48864205 48864112 6.730000e-24 122.0
27 TraesCS2B01G094400 chr6B 93.258 89 5 1 4422 4509 120317561 120317473 4.020000e-26 130.0
28 TraesCS2B01G094400 chr6B 91.398 93 7 1 4420 4511 224856609 224856517 5.210000e-25 126.0
29 TraesCS2B01G094400 chr1B 93.182 88 5 1 4425 4511 97376181 97376094 1.450000e-25 128.0
30 TraesCS2B01G094400 chr1B 85.870 92 13 0 1422 1513 561547754 561547845 1.130000e-16 99.0
31 TraesCS2B01G094400 chr1B 84.783 92 14 0 1422 1513 561546680 561546771 5.280000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G094400 chr2B 54549307 54554259 4952 True 9147.000000 9147 100.000000 1 4953 1 chr2B.!!$R1 4952
1 TraesCS2B01G094400 chr2A 36051997 36056897 4900 True 2285.333333 5204 94.431333 1 4953 3 chr2A.!!$R2 4952
2 TraesCS2B01G094400 chr2A 44039010 44039618 608 False 747.000000 747 88.676000 1 625 1 chr2A.!!$F1 624
3 TraesCS2B01G094400 chr2D 32802713 32807710 4997 True 2187.666667 5073 90.311000 1 4953 3 chr2D.!!$R1 4952
4 TraesCS2B01G094400 chr4D 349189506 349190359 853 True 472.000000 472 76.958000 2440 3314 1 chr4D.!!$R1 874
5 TraesCS2B01G094400 chr4D 630162 631000 838 False 364.000000 364 75.000000 2453 3309 1 chr4D.!!$F1 856
6 TraesCS2B01G094400 chr4A 115788280 115789127 847 False 466.000000 466 76.941000 2440 3308 1 chr4A.!!$F2 868
7 TraesCS2B01G094400 chr4A 900692 901533 841 False 372.000000 372 75.087000 2453 3309 1 chr4A.!!$F1 856
8 TraesCS2B01G094400 chr4B 431795269 431796128 859 True 462.000000 462 76.742000 2440 3321 1 chr4B.!!$R2 881
9 TraesCS2B01G094400 chr4B 1243723 1244561 838 True 381.000000 381 75.346000 2453 3309 1 chr4B.!!$R1 856
10 TraesCS2B01G094400 chr5B 515185778 515186544 766 False 333.000000 333 75.031000 2527 3313 1 chr5B.!!$F1 786
11 TraesCS2B01G094400 chr5D 425840560 425841373 813 False 326.000000 326 74.408000 2480 3313 1 chr5D.!!$F1 833
12 TraesCS2B01G094400 chr5A 540053618 540054431 813 False 326.000000 326 74.408000 2480 3313 1 chr5A.!!$F1 833

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
912 927 0.324275 GGCCTGGTTATGGGCTTTGA 60.324 55.0 0.00 0.00 46.80 2.69 F
2013 2031 0.104120 TCGTGGATTTCATCGCCGAT 59.896 50.0 0.00 0.00 30.58 4.18 F
2016 2034 0.463474 TGGATTTCATCGCCGATGCA 60.463 50.0 21.83 8.97 39.63 3.96 F
3676 3944 0.172578 TGATGAAGCCGTGTACTCCG 59.827 55.0 0.00 0.00 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2284 2305 0.514255 GACCGCCGTTGTTTCTTACC 59.486 55.0 0.00 0.00 0.00 2.85 R
3651 3919 0.250467 ACACGGCTTCATCAACTGCT 60.250 50.0 0.00 0.00 0.00 4.24 R
3678 3946 0.681733 AGCCGTGCATCTATAGGGTG 59.318 55.0 0.00 1.05 0.00 4.61 R
4477 4752 0.597568 TCCGATTTACACGTCGTGGT 59.402 50.0 27.77 16.04 37.94 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 4.072913 CGATCACCCTCGTTCGTG 57.927 61.111 0.00 0.00 34.00 4.35
169 170 1.953231 GATCTTGCCCAAGCTTGCCC 61.953 60.000 21.43 13.50 40.80 5.36
189 190 1.352156 AAAATCTCACGCTCCGTCGC 61.352 55.000 0.00 0.00 38.32 5.19
224 225 5.665232 CATCAACCAACAAAATTGCGTTAC 58.335 37.500 0.00 0.00 0.00 2.50
226 227 5.411781 TCAACCAACAAAATTGCGTTACTT 58.588 33.333 0.00 0.00 0.00 2.24
275 279 9.730705 ATATCAAAACAAGATCAGAAGTTCAGA 57.269 29.630 5.50 2.64 0.00 3.27
327 331 4.785301 TGACCCATGGAAATTCTGAGATC 58.215 43.478 15.22 0.00 0.00 2.75
341 345 9.476928 AAATTCTGAGATCTGGAAATTCTCAAT 57.523 29.630 0.00 0.00 43.76 2.57
366 372 2.776665 TCTGGATAGGAAGGAAAGGGG 58.223 52.381 0.00 0.00 0.00 4.79
408 414 0.451792 GAAGCTTCTTGCGCTTGTCG 60.452 55.000 19.44 0.00 46.85 4.35
865 874 2.187946 CCACCATCTCGCTCCCAC 59.812 66.667 0.00 0.00 0.00 4.61
912 927 0.324275 GGCCTGGTTATGGGCTTTGA 60.324 55.000 0.00 0.00 46.80 2.69
916 931 3.165071 CCTGGTTATGGGCTTTGAGTTT 58.835 45.455 0.00 0.00 0.00 2.66
930 945 0.890683 GAGTTTGGCCCAACTCCATG 59.109 55.000 30.64 0.00 32.92 3.66
934 949 2.043953 GGCCCAACTCCATGTCCC 60.044 66.667 0.00 0.00 0.00 4.46
941 956 1.566298 AACTCCATGTCCCCTGGCTC 61.566 60.000 0.00 0.00 33.56 4.70
968 983 2.359230 GTCCAGCTCAGTGGCACC 60.359 66.667 15.27 0.00 37.53 5.01
1053 1071 2.055042 CGGTCTGGTCCTCCTCCTG 61.055 68.421 0.00 0.00 34.23 3.86
1179 1197 2.768527 GGACTCCAATGTCTCCATCTCA 59.231 50.000 0.00 0.00 37.16 3.27
1182 1200 1.482182 TCCAATGTCTCCATCTCACCG 59.518 52.381 0.00 0.00 0.00 4.94
1183 1201 1.473965 CCAATGTCTCCATCTCACCGG 60.474 57.143 0.00 0.00 0.00 5.28
1400 1418 3.050275 GGCCTCTCGTGCAACCAC 61.050 66.667 0.00 0.00 38.62 4.16
1824 1842 1.949257 CAACCAGCGGTTCAACCTC 59.051 57.895 4.68 0.00 43.05 3.85
1827 1845 1.376037 CCAGCGGTTCAACCTCTCC 60.376 63.158 4.68 0.00 29.27 3.71
1937 1955 1.138047 GACGTCTACATCAACGGCGG 61.138 60.000 13.24 0.00 42.99 6.13
2013 2031 0.104120 TCGTGGATTTCATCGCCGAT 59.896 50.000 0.00 0.00 30.58 4.18
2016 2034 0.463474 TGGATTTCATCGCCGATGCA 60.463 50.000 21.83 8.97 39.63 3.96
2118 2136 3.955291 CGAGATCATGAAGCTCGGT 57.045 52.632 29.24 3.32 45.54 4.69
2249 2270 3.993234 CGTCGCCATCTGCATCGC 61.993 66.667 0.00 0.00 41.33 4.58
2379 2400 2.604686 TCCAAGGTCTCAGCCGCT 60.605 61.111 0.00 0.00 0.00 5.52
2380 2401 1.304962 TCCAAGGTCTCAGCCGCTA 60.305 57.895 0.00 0.00 0.00 4.26
2381 2402 1.153549 CCAAGGTCTCAGCCGCTAC 60.154 63.158 0.00 0.00 0.00 3.58
2382 2403 1.608717 CCAAGGTCTCAGCCGCTACT 61.609 60.000 0.00 0.00 0.00 2.57
3289 3328 4.025858 TGCTGTGGAGCCTGGAGC 62.026 66.667 0.00 0.00 45.57 4.70
3392 3431 2.567497 GGAGTGTTCGTCGGGTGGA 61.567 63.158 0.00 0.00 0.00 4.02
3405 3444 2.509336 GTGGACGGCGATGGTGAG 60.509 66.667 16.62 0.00 0.00 3.51
3417 3456 2.125106 GGTGAGGATGGTGCGGAC 60.125 66.667 0.00 0.00 0.00 4.79
3418 3457 2.662596 GTGAGGATGGTGCGGACA 59.337 61.111 9.96 0.00 0.00 4.02
3457 3496 5.071519 AGGGTCTTCTCACAGATATTGGATG 59.928 44.000 0.00 0.00 0.00 3.51
3499 3539 2.044650 GGATGCTGCTGCTTGGGA 60.045 61.111 17.00 0.00 40.48 4.37
3512 3552 1.852157 TTGGGAGGTGGCCTGACAT 60.852 57.895 3.32 0.00 31.76 3.06
3518 3558 0.478072 AGGTGGCCTGACATTTGACA 59.522 50.000 3.32 0.00 29.57 3.58
3529 3569 6.736794 GCCTGACATTTGACAAAATCTGACTT 60.737 38.462 17.12 0.00 33.59 3.01
3530 3570 6.639686 CCTGACATTTGACAAAATCTGACTTG 59.360 38.462 17.12 7.71 33.59 3.16
3531 3571 7.099266 TGACATTTGACAAAATCTGACTTGT 57.901 32.000 4.41 2.10 38.46 3.16
3532 3572 7.546358 TGACATTTGACAAAATCTGACTTGTT 58.454 30.769 4.41 0.00 35.93 2.83
3533 3573 8.034215 TGACATTTGACAAAATCTGACTTGTTT 58.966 29.630 4.41 0.00 35.93 2.83
3539 3579 7.825681 TGACAAAATCTGACTTGTTTTTCTGA 58.174 30.769 8.01 0.00 35.93 3.27
3549 3589 7.054124 TGACTTGTTTTTCTGAGGTTCACTAT 58.946 34.615 0.00 0.00 0.00 2.12
3550 3590 7.226720 TGACTTGTTTTTCTGAGGTTCACTATC 59.773 37.037 0.00 0.00 0.00 2.08
3551 3591 6.486993 ACTTGTTTTTCTGAGGTTCACTATCC 59.513 38.462 0.00 0.00 0.00 2.59
3552 3592 5.935945 TGTTTTTCTGAGGTTCACTATCCA 58.064 37.500 0.00 0.00 0.00 3.41
3553 3593 6.542821 TGTTTTTCTGAGGTTCACTATCCAT 58.457 36.000 0.00 0.00 0.00 3.41
3554 3594 7.685481 TGTTTTTCTGAGGTTCACTATCCATA 58.315 34.615 0.00 0.00 0.00 2.74
3555 3595 7.824289 TGTTTTTCTGAGGTTCACTATCCATAG 59.176 37.037 0.00 0.00 36.46 2.23
3556 3596 6.485830 TTTCTGAGGTTCACTATCCATAGG 57.514 41.667 0.00 0.00 34.69 2.57
3557 3597 4.483950 TCTGAGGTTCACTATCCATAGGG 58.516 47.826 0.00 0.00 35.09 3.53
3558 3598 4.078571 TCTGAGGTTCACTATCCATAGGGT 60.079 45.833 0.00 0.00 35.31 4.34
3568 3608 1.454479 CCATAGGGTGGCCAAGCTG 60.454 63.158 7.24 0.55 42.12 4.24
3583 3623 3.857157 AAGCTGGGTTCAGTTTGAGTA 57.143 42.857 0.00 0.00 41.75 2.59
3584 3624 3.127425 AGCTGGGTTCAGTTTGAGTAC 57.873 47.619 0.00 0.00 42.78 2.73
3585 3625 2.438021 AGCTGGGTTCAGTTTGAGTACA 59.562 45.455 0.00 0.00 42.78 2.90
3587 3627 4.286032 AGCTGGGTTCAGTTTGAGTACATA 59.714 41.667 0.00 0.00 42.78 2.29
3615 3656 1.102154 TTGCTGGTGTTCTGGTTGTG 58.898 50.000 0.00 0.00 0.00 3.33
3630 3671 3.285484 GGTTGTGAGATGATGATGCCTT 58.715 45.455 0.00 0.00 0.00 4.35
3635 3676 4.406649 TGTGAGATGATGATGCCTTGAGTA 59.593 41.667 0.00 0.00 0.00 2.59
3638 3679 6.147492 GTGAGATGATGATGCCTTGAGTATTC 59.853 42.308 0.00 0.00 0.00 1.75
3651 3919 7.122501 TGCCTTGAGTATTCTTATGCAATTTGA 59.877 33.333 0.00 0.00 0.00 2.69
3676 3944 0.172578 TGATGAAGCCGTGTACTCCG 59.827 55.000 0.00 0.00 0.00 4.63
3678 3946 0.172803 ATGAAGCCGTGTACTCCGAC 59.827 55.000 7.02 0.00 0.00 4.79
3679 3947 1.174078 TGAAGCCGTGTACTCCGACA 61.174 55.000 7.02 0.95 0.00 4.35
3680 3948 0.731855 GAAGCCGTGTACTCCGACAC 60.732 60.000 7.02 0.00 45.19 3.67
3699 3968 0.681733 CCCTATAGATGCACGGCTGT 59.318 55.000 0.00 0.00 0.00 4.40
3723 3992 4.913335 ATTGCCAGATACAGCAGAAATG 57.087 40.909 0.00 0.00 40.73 2.32
3727 3996 3.311871 GCCAGATACAGCAGAAATGACAG 59.688 47.826 0.00 0.00 0.00 3.51
3730 3999 1.725641 TACAGCAGAAATGACAGCCG 58.274 50.000 0.00 0.00 0.00 5.52
3747 4016 0.098728 CCGGCTGCCGTTTTAATCTG 59.901 55.000 35.82 16.07 46.80 2.90
3751 4020 2.352715 GGCTGCCGTTTTAATCTGCTTT 60.353 45.455 1.35 0.00 0.00 3.51
3772 4041 6.500684 TTTCAGCACCATTCATAGAAGAAC 57.499 37.500 0.00 0.00 0.00 3.01
3788 4057 4.396166 AGAAGAACACAGAAACACAACCAG 59.604 41.667 0.00 0.00 0.00 4.00
3833 4102 4.396166 GTGCCATGCTGTCAGTAAAACTAT 59.604 41.667 0.93 0.00 0.00 2.12
3837 4106 6.722301 CCATGCTGTCAGTAAAACTATCATG 58.278 40.000 0.93 3.48 0.00 3.07
3904 4174 4.394300 CCTCAACAGCAAGAAGGTTCATAG 59.606 45.833 0.00 0.00 0.00 2.23
3952 4222 2.210116 GAAACGCCTCACAGAAGAACA 58.790 47.619 0.00 0.00 0.00 3.18
4031 4303 4.681978 GACAACCCGAGCCTGCGT 62.682 66.667 0.00 0.00 0.00 5.24
4084 4356 1.602237 GGGAACTTGATCGGCTCCA 59.398 57.895 9.23 0.00 0.00 3.86
4266 4538 1.265095 CTGTATGCGCCCATGTTCATC 59.735 52.381 4.18 0.00 32.85 2.92
4287 4559 1.451504 CTCCTCTTGGCACCACACA 59.548 57.895 0.00 0.00 0.00 3.72
4313 4585 1.056103 GCATCTGTGTAGATAGCGCG 58.944 55.000 0.00 0.00 41.71 6.86
4315 4587 2.579541 CATCTGTGTAGATAGCGCGAG 58.420 52.381 12.10 0.00 41.71 5.03
4327 4599 2.691522 CGCGAGCATGAACAGTCG 59.308 61.111 0.00 0.00 35.51 4.18
4353 4628 9.012161 GTACAACTAAATATACCCGAGAGAGAT 57.988 37.037 0.00 0.00 0.00 2.75
4366 4641 4.261783 CCGAGAGAGATAAGTGCAGCATAA 60.262 45.833 0.00 0.00 0.00 1.90
4424 4699 5.654030 AGTAGCTACTGTGAGCAATCAGCT 61.654 45.833 25.52 7.18 46.09 4.24
4425 4700 6.384952 AGTAGCTACTGTGAGCAATCAGCTA 61.385 44.000 25.52 6.37 44.46 3.32
4426 4701 8.339247 AGTAGCTACTGTGAGCAATCAGCTAC 62.339 46.154 25.52 19.76 44.46 3.58
4433 4708 3.696306 GCAATCAGCTACTCCCTCC 57.304 57.895 0.00 0.00 41.15 4.30
4434 4709 0.249657 GCAATCAGCTACTCCCTCCG 60.250 60.000 0.00 0.00 41.15 4.63
4435 4710 1.115467 CAATCAGCTACTCCCTCCGT 58.885 55.000 0.00 0.00 0.00 4.69
4436 4711 1.482593 CAATCAGCTACTCCCTCCGTT 59.517 52.381 0.00 0.00 0.00 4.44
4437 4712 1.404843 ATCAGCTACTCCCTCCGTTC 58.595 55.000 0.00 0.00 0.00 3.95
4438 4713 0.683504 TCAGCTACTCCCTCCGTTCC 60.684 60.000 0.00 0.00 0.00 3.62
4439 4714 1.753463 AGCTACTCCCTCCGTTCCG 60.753 63.158 0.00 0.00 0.00 4.30
4440 4715 1.751927 GCTACTCCCTCCGTTCCGA 60.752 63.158 0.00 0.00 0.00 4.55
4441 4716 1.108132 GCTACTCCCTCCGTTCCGAT 61.108 60.000 0.00 0.00 0.00 4.18
4442 4717 1.400737 CTACTCCCTCCGTTCCGATT 58.599 55.000 0.00 0.00 0.00 3.34
4443 4718 1.755380 CTACTCCCTCCGTTCCGATTT 59.245 52.381 0.00 0.00 0.00 2.17
4444 4719 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
4445 4720 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
4446 4721 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
4447 4722 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
4449 4724 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.00 46.18 4.18
4450 4725 2.448219 CTCCGTTCCGATTTACTCGTC 58.552 52.381 0.00 0.00 46.18 4.20
4451 4726 1.811965 TCCGTTCCGATTTACTCGTCA 59.188 47.619 0.00 0.00 46.18 4.35
4452 4727 2.424601 TCCGTTCCGATTTACTCGTCAT 59.575 45.455 0.00 0.00 46.18 3.06
4453 4728 2.534349 CCGTTCCGATTTACTCGTCATG 59.466 50.000 0.00 0.00 46.18 3.07
4454 4729 2.534349 CGTTCCGATTTACTCGTCATGG 59.466 50.000 0.00 0.00 46.18 3.66
4455 4730 3.518590 GTTCCGATTTACTCGTCATGGT 58.481 45.455 0.00 0.00 46.18 3.55
4456 4731 3.880047 TCCGATTTACTCGTCATGGTT 57.120 42.857 0.00 0.00 46.18 3.67
4457 4732 4.196626 TCCGATTTACTCGTCATGGTTT 57.803 40.909 0.00 0.00 46.18 3.27
4458 4733 4.571919 TCCGATTTACTCGTCATGGTTTT 58.428 39.130 0.00 0.00 46.18 2.43
4459 4734 5.722263 TCCGATTTACTCGTCATGGTTTTA 58.278 37.500 0.00 0.00 46.18 1.52
4460 4735 5.808540 TCCGATTTACTCGTCATGGTTTTAG 59.191 40.000 0.00 0.00 46.18 1.85
4461 4736 5.579511 CCGATTTACTCGTCATGGTTTTAGT 59.420 40.000 0.00 0.00 46.18 2.24
4462 4737 6.091713 CCGATTTACTCGTCATGGTTTTAGTT 59.908 38.462 0.00 0.00 46.18 2.24
4463 4738 7.360607 CCGATTTACTCGTCATGGTTTTAGTTT 60.361 37.037 0.00 0.00 46.18 2.66
4464 4739 8.013378 CGATTTACTCGTCATGGTTTTAGTTTT 58.987 33.333 0.00 0.00 42.56 2.43
4467 4742 8.891671 TTACTCGTCATGGTTTTAGTTTTAGT 57.108 30.769 0.00 0.00 0.00 2.24
4468 4743 7.797038 ACTCGTCATGGTTTTAGTTTTAGTT 57.203 32.000 0.00 0.00 0.00 2.24
4469 4744 7.636326 ACTCGTCATGGTTTTAGTTTTAGTTG 58.364 34.615 0.00 0.00 0.00 3.16
4470 4745 7.496591 ACTCGTCATGGTTTTAGTTTTAGTTGA 59.503 33.333 0.00 0.00 0.00 3.18
4471 4746 8.211116 TCGTCATGGTTTTAGTTTTAGTTGAA 57.789 30.769 0.00 0.00 0.00 2.69
4472 4747 8.124199 TCGTCATGGTTTTAGTTTTAGTTGAAC 58.876 33.333 0.00 0.00 0.00 3.18
4473 4748 8.126700 CGTCATGGTTTTAGTTTTAGTTGAACT 58.873 33.333 2.37 2.37 40.28 3.01
4485 4760 5.640218 TTAGTTGAACTAAAACCACGACG 57.360 39.130 14.88 0.00 37.71 5.12
4486 4761 3.524541 AGTTGAACTAAAACCACGACGT 58.475 40.909 0.00 0.00 0.00 4.34
4487 4762 3.307782 AGTTGAACTAAAACCACGACGTG 59.692 43.478 21.02 21.02 0.00 4.49
4488 4763 2.891112 TGAACTAAAACCACGACGTGT 58.109 42.857 25.18 11.62 0.00 4.49
4489 4764 4.039151 TGAACTAAAACCACGACGTGTA 57.961 40.909 25.18 10.95 0.00 2.90
4490 4765 4.428209 TGAACTAAAACCACGACGTGTAA 58.572 39.130 25.18 6.10 0.00 2.41
4491 4766 4.867047 TGAACTAAAACCACGACGTGTAAA 59.133 37.500 25.18 6.44 0.00 2.01
4492 4767 5.523188 TGAACTAAAACCACGACGTGTAAAT 59.477 36.000 25.18 12.00 0.00 1.40
4493 4768 5.580911 ACTAAAACCACGACGTGTAAATC 57.419 39.130 25.18 0.00 0.00 2.17
4494 4769 3.508648 AAAACCACGACGTGTAAATCG 57.491 42.857 25.18 12.01 43.97 3.34
4495 4770 1.421382 AACCACGACGTGTAAATCGG 58.579 50.000 25.18 11.55 42.67 4.18
4496 4771 0.597568 ACCACGACGTGTAAATCGGA 59.402 50.000 25.18 0.00 42.67 4.55
4497 4772 1.000385 ACCACGACGTGTAAATCGGAA 60.000 47.619 25.18 0.00 42.67 4.30
4498 4773 1.387756 CCACGACGTGTAAATCGGAAC 59.612 52.381 25.18 0.00 42.67 3.62
4499 4774 2.052891 CACGACGTGTAAATCGGAACA 58.947 47.619 19.77 0.00 42.67 3.18
4500 4775 2.090041 CACGACGTGTAAATCGGAACAG 59.910 50.000 19.77 0.00 42.67 3.16
4501 4776 2.030893 ACGACGTGTAAATCGGAACAGA 60.031 45.455 0.00 0.00 42.67 3.41
4502 4777 2.592897 CGACGTGTAAATCGGAACAGAG 59.407 50.000 0.00 0.00 34.67 3.35
4503 4778 2.921754 GACGTGTAAATCGGAACAGAGG 59.078 50.000 0.00 0.00 0.00 3.69
4504 4779 2.268298 CGTGTAAATCGGAACAGAGGG 58.732 52.381 0.00 0.00 0.00 4.30
4505 4780 2.094390 CGTGTAAATCGGAACAGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
4506 4781 3.522553 GTGTAAATCGGAACAGAGGGAG 58.477 50.000 0.00 0.00 0.00 4.30
4577 4888 2.095059 CAGGTGCCAAAACTGACTATGC 60.095 50.000 0.00 0.00 34.21 3.14
4597 4908 2.871182 TGCTCTCTACAAGCATACCG 57.129 50.000 0.00 0.00 44.51 4.02
4633 4945 1.587946 GTGCAACAAAACCAAAGCTCG 59.412 47.619 0.00 0.00 36.32 5.03
4704 5018 5.462068 GGAACTACTGAAAAACATGGCAAAC 59.538 40.000 0.00 0.00 0.00 2.93
4823 5137 1.000938 GAAAGTTGCTCAACCCTGCAG 60.001 52.381 6.78 6.78 42.06 4.41
4826 5140 0.524862 GTTGCTCAACCCTGCAGATG 59.475 55.000 17.39 11.38 40.46 2.90
4890 5204 7.750229 AGTTCATAATACACCTGCAATATGG 57.250 36.000 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
169 170 0.366871 CGACGGAGCGTGAGATTTTG 59.633 55.000 0.00 0.00 41.37 2.44
189 190 1.379044 GTTGATGCAGTGGGGGAGG 60.379 63.158 0.00 0.00 0.00 4.30
196 197 4.553156 GCAATTTTGTTGGTTGATGCAGTG 60.553 41.667 0.00 0.00 33.00 3.66
251 255 8.348507 GTTCTGAACTTCTGATCTTGTTTTGAT 58.651 33.333 13.13 0.00 0.00 2.57
269 273 0.966920 TCCGACTCTGGGTTCTGAAC 59.033 55.000 12.05 12.05 0.00 3.18
275 279 1.305381 CCTCCTCCGACTCTGGGTT 60.305 63.158 0.00 0.00 0.00 4.11
327 331 6.354938 TCCAGATCTCATTGAGAATTTCCAG 58.645 40.000 19.73 8.94 42.27 3.86
341 345 4.904251 CCTTTCCTTCCTATCCAGATCTCA 59.096 45.833 0.00 0.00 0.00 3.27
381 387 1.207593 CAAGAAGCTTCGCCGGTTG 59.792 57.895 20.43 14.65 0.00 3.77
383 389 3.050275 GCAAGAAGCTTCGCCGGT 61.050 61.111 20.43 0.00 41.15 5.28
475 481 3.160748 GAGCCTCCCTCCCTCTGC 61.161 72.222 0.00 0.00 34.35 4.26
477 483 2.710826 GGAGAGCCTCCCTCCCTCT 61.711 68.421 9.46 0.00 44.36 3.69
865 874 1.762370 AGCCCAACCCAACAAAAAGAG 59.238 47.619 0.00 0.00 0.00 2.85
900 909 1.899142 GGCCAAACTCAAAGCCCATAA 59.101 47.619 0.00 0.00 39.60 1.90
912 927 0.188342 ACATGGAGTTGGGCCAAACT 59.812 50.000 26.25 26.25 43.08 2.66
916 931 2.763215 GGACATGGAGTTGGGCCA 59.237 61.111 0.00 0.00 40.24 5.36
930 945 3.023735 AATGGGGAGCCAGGGGAC 61.024 66.667 0.00 0.00 0.00 4.46
934 949 2.441532 CTGCAATGGGGAGCCAGG 60.442 66.667 0.00 0.00 0.00 4.45
941 956 1.751927 GAGCTGGACTGCAATGGGG 60.752 63.158 0.00 0.00 34.99 4.96
968 983 0.038801 TGCTCACTCACTGAAGCTCG 60.039 55.000 3.46 0.00 0.00 5.03
1036 1054 2.363172 GCAGGAGGAGGACCAGACC 61.363 68.421 0.00 0.00 38.94 3.85
1037 1055 1.305718 AGCAGGAGGAGGACCAGAC 60.306 63.158 0.00 0.00 38.94 3.51
1038 1056 1.000993 GAGCAGGAGGAGGACCAGA 59.999 63.158 0.00 0.00 38.94 3.86
1039 1057 1.001503 AGAGCAGGAGGAGGACCAG 59.998 63.158 0.00 0.00 38.94 4.00
1041 1059 1.760480 GGAGAGCAGGAGGAGGACC 60.760 68.421 0.00 0.00 0.00 4.46
1042 1060 1.760480 GGGAGAGCAGGAGGAGGAC 60.760 68.421 0.00 0.00 0.00 3.85
1479 1497 4.851214 AGGAGAGCGAGGGAGCCC 62.851 72.222 0.00 0.00 38.01 5.19
1583 1601 3.925238 CGGCATTGACGCGGTAGC 61.925 66.667 12.47 6.91 40.74 3.58
2141 2159 4.351938 CGGTGTTGAGGGCGTCGA 62.352 66.667 0.00 0.00 0.00 4.20
2146 2164 2.743928 CTGAGCGGTGTTGAGGGC 60.744 66.667 0.00 0.00 0.00 5.19
2149 2167 1.354040 GATGTCTGAGCGGTGTTGAG 58.646 55.000 0.00 0.00 0.00 3.02
2284 2305 0.514255 GACCGCCGTTGTTTCTTACC 59.486 55.000 0.00 0.00 0.00 2.85
2286 2307 0.603439 GGGACCGCCGTTGTTTCTTA 60.603 55.000 0.00 0.00 33.83 2.10
2315 2336 3.043419 CTATGGAGGAGGACGGCG 58.957 66.667 4.80 4.80 0.00 6.46
2353 2374 2.126031 GACCTTGGACGCGGAGAC 60.126 66.667 12.47 0.00 0.00 3.36
2358 2379 2.811317 GCTGAGACCTTGGACGCG 60.811 66.667 3.53 3.53 0.00 6.01
2361 2382 1.605058 TAGCGGCTGAGACCTTGGAC 61.605 60.000 13.86 0.00 0.00 4.02
2379 2400 1.515954 GCGGCTGTGGCTTCTAGTA 59.484 57.895 0.00 0.00 38.73 1.82
2380 2401 2.266055 GCGGCTGTGGCTTCTAGT 59.734 61.111 0.00 0.00 38.73 2.57
2381 2402 2.512515 GGCGGCTGTGGCTTCTAG 60.513 66.667 0.00 0.00 38.73 2.43
2382 2403 4.096003 GGGCGGCTGTGGCTTCTA 62.096 66.667 9.56 0.00 38.73 2.10
2790 2820 1.406539 GAGACGCCGGTATGAAGGTAA 59.593 52.381 1.90 0.00 0.00 2.85
3375 3414 1.372623 GTCCACCCGACGAACACTC 60.373 63.158 0.00 0.00 0.00 3.51
3392 3431 2.501128 CATCCTCACCATCGCCGT 59.499 61.111 0.00 0.00 0.00 5.68
3405 3444 2.436646 CCAGTGTCCGCACCATCC 60.437 66.667 0.00 0.00 46.35 3.51
3418 3457 2.516888 CCCTCGTTGACACCCCAGT 61.517 63.158 0.00 0.00 0.00 4.00
3427 3466 1.613925 CTGTGAGAAGACCCTCGTTGA 59.386 52.381 0.00 0.00 35.99 3.18
3432 3471 4.651503 TCCAATATCTGTGAGAAGACCCTC 59.348 45.833 0.00 0.00 0.00 4.30
3457 3496 2.808906 ACAATCTACCTTCCCCTTGC 57.191 50.000 0.00 0.00 0.00 4.01
3499 3539 0.478072 TGTCAAATGTCAGGCCACCT 59.522 50.000 5.01 0.00 0.00 4.00
3512 3552 8.924691 CAGAAAAACAAGTCAGATTTTGTCAAA 58.075 29.630 0.00 0.00 36.56 2.69
3518 3558 7.410120 ACCTCAGAAAAACAAGTCAGATTTT 57.590 32.000 0.00 0.00 0.00 1.82
3529 3569 5.935945 TGGATAGTGAACCTCAGAAAAACA 58.064 37.500 0.00 0.00 0.00 2.83
3530 3570 7.281100 CCTATGGATAGTGAACCTCAGAAAAAC 59.719 40.741 0.00 0.00 0.00 2.43
3531 3571 7.338710 CCTATGGATAGTGAACCTCAGAAAAA 58.661 38.462 0.00 0.00 0.00 1.94
3532 3572 6.126768 CCCTATGGATAGTGAACCTCAGAAAA 60.127 42.308 0.00 0.00 0.00 2.29
3533 3573 5.366768 CCCTATGGATAGTGAACCTCAGAAA 59.633 44.000 0.00 0.00 0.00 2.52
3551 3591 1.454479 CCAGCTTGGCCACCCTATG 60.454 63.158 3.88 0.00 0.00 2.23
3552 3592 2.693871 CCCAGCTTGGCCACCCTAT 61.694 63.158 3.88 0.00 35.79 2.57
3553 3593 3.338250 CCCAGCTTGGCCACCCTA 61.338 66.667 3.88 0.00 35.79 3.53
3555 3595 4.621087 AACCCAGCTTGGCCACCC 62.621 66.667 3.88 0.00 35.79 4.61
3556 3596 2.991540 GAACCCAGCTTGGCCACC 60.992 66.667 3.88 0.00 35.79 4.61
3557 3597 2.203480 TGAACCCAGCTTGGCCAC 60.203 61.111 3.88 0.00 35.79 5.01
3558 3598 2.115910 CTGAACCCAGCTTGGCCA 59.884 61.111 0.00 0.00 35.79 5.36
3568 3608 4.563061 ACGTATGTACTCAAACTGAACCC 58.437 43.478 0.00 0.00 0.00 4.11
3583 3623 3.568007 ACACCAGCAATTTCAACGTATGT 59.432 39.130 0.00 0.00 0.00 2.29
3584 3624 4.159377 ACACCAGCAATTTCAACGTATG 57.841 40.909 0.00 0.00 0.00 2.39
3585 3625 4.518970 AGAACACCAGCAATTTCAACGTAT 59.481 37.500 0.00 0.00 0.00 3.06
3587 3627 2.687935 AGAACACCAGCAATTTCAACGT 59.312 40.909 0.00 0.00 0.00 3.99
3615 3656 6.465948 AGAATACTCAAGGCATCATCATCTC 58.534 40.000 0.00 0.00 0.00 2.75
3630 3671 7.337689 ACTGCTCAAATTGCATAAGAATACTCA 59.662 33.333 0.00 0.00 39.86 3.41
3635 3676 6.927416 TCAACTGCTCAAATTGCATAAGAAT 58.073 32.000 0.00 0.00 39.86 2.40
3638 3679 6.327154 TCATCAACTGCTCAAATTGCATAAG 58.673 36.000 0.00 0.00 39.86 1.73
3651 3919 0.250467 ACACGGCTTCATCAACTGCT 60.250 50.000 0.00 0.00 0.00 4.24
3676 3944 1.605712 GCCGTGCATCTATAGGGTGTC 60.606 57.143 0.00 0.00 0.00 3.67
3678 3946 0.681733 AGCCGTGCATCTATAGGGTG 59.318 55.000 0.00 1.05 0.00 4.61
3679 3947 0.681733 CAGCCGTGCATCTATAGGGT 59.318 55.000 0.00 0.00 0.00 4.34
3680 3948 0.681733 ACAGCCGTGCATCTATAGGG 59.318 55.000 0.00 0.00 0.00 3.53
3699 3968 6.602803 TCATTTCTGCTGTATCTGGCAATTTA 59.397 34.615 0.00 0.00 38.02 1.40
3730 3999 0.811281 AGCAGATTAAAACGGCAGCC 59.189 50.000 0.00 0.00 0.00 4.85
3751 4020 4.937620 GTGTTCTTCTATGAATGGTGCTGA 59.062 41.667 0.00 0.00 0.00 4.26
3767 4036 4.079253 ACTGGTTGTGTTTCTGTGTTCTT 58.921 39.130 0.00 0.00 0.00 2.52
3817 4086 7.776933 TCATCATGATAGTTTTACTGACAGC 57.223 36.000 8.15 0.00 0.00 4.40
3833 4102 5.198207 AGCAACATTCCTGAATCATCATGA 58.802 37.500 0.00 0.00 34.37 3.07
3837 4106 3.624861 ACGAGCAACATTCCTGAATCATC 59.375 43.478 0.00 0.00 0.00 2.92
3904 4174 4.492570 CGAAGGTCGTGAATAATCAACTGC 60.493 45.833 0.00 0.00 37.30 4.40
3980 4251 4.460034 ACACACCGTCTTAAAAGTTTTGGT 59.540 37.500 11.18 6.32 0.00 3.67
3990 4261 1.577468 CTGTGCACACACCGTCTTAA 58.423 50.000 17.42 0.00 46.86 1.85
4059 4331 1.303309 CGATCAAGTTCCCCTGATGC 58.697 55.000 0.00 0.00 0.00 3.91
4084 4356 1.615392 GGTGAAGAAGGCATTGCAACT 59.385 47.619 11.39 3.49 0.00 3.16
4211 4483 0.179073 CCTGTACTCGGCCATGAAGG 60.179 60.000 2.24 0.00 41.84 3.46
4221 4493 3.064987 CTCACCCCGCCTGTACTCG 62.065 68.421 0.00 0.00 0.00 4.18
4227 4499 1.443407 CTACATCTCACCCCGCCTG 59.557 63.158 0.00 0.00 0.00 4.85
4266 4538 4.020617 TGGTGCCAAGAGGAGCCG 62.021 66.667 0.00 0.00 36.89 5.52
4287 4559 4.321601 GCTATCTACACAGATGCGGAGATT 60.322 45.833 1.09 0.00 41.75 2.40
4313 4585 3.318017 AGTTGTACGACTGTTCATGCTC 58.682 45.455 15.25 0.00 0.00 4.26
4315 4587 5.585500 TTTAGTTGTACGACTGTTCATGC 57.415 39.130 23.70 0.00 0.00 4.06
4327 4599 8.388484 TCTCTCTCGGGTATATTTAGTTGTAC 57.612 38.462 0.00 0.00 0.00 2.90
4353 4628 6.753180 TGTCCAAATTTTTATGCTGCACTTA 58.247 32.000 3.57 0.00 0.00 2.24
4356 4631 4.143052 GCTGTCCAAATTTTTATGCTGCAC 60.143 41.667 3.57 0.00 0.00 4.57
4441 4716 9.328845 ACTAAAACTAAAACCATGACGAGTAAA 57.671 29.630 0.00 0.00 0.00 2.01
4442 4717 8.891671 ACTAAAACTAAAACCATGACGAGTAA 57.108 30.769 0.00 0.00 0.00 2.24
4443 4718 8.767085 CAACTAAAACTAAAACCATGACGAGTA 58.233 33.333 0.00 0.00 0.00 2.59
4444 4719 7.496591 TCAACTAAAACTAAAACCATGACGAGT 59.503 33.333 0.00 0.00 0.00 4.18
4445 4720 7.857569 TCAACTAAAACTAAAACCATGACGAG 58.142 34.615 0.00 0.00 0.00 4.18
4446 4721 7.789273 TCAACTAAAACTAAAACCATGACGA 57.211 32.000 0.00 0.00 0.00 4.20
4447 4722 8.126700 AGTTCAACTAAAACTAAAACCATGACG 58.873 33.333 0.00 0.00 35.25 4.35
4462 4737 5.580297 ACGTCGTGGTTTTAGTTCAACTAAA 59.420 36.000 17.26 17.26 45.78 1.85
4463 4738 5.005586 CACGTCGTGGTTTTAGTTCAACTAA 59.994 40.000 17.75 5.86 38.79 2.24
4464 4739 4.503734 CACGTCGTGGTTTTAGTTCAACTA 59.496 41.667 17.75 0.00 0.00 2.24
4465 4740 3.307782 CACGTCGTGGTTTTAGTTCAACT 59.692 43.478 17.75 0.00 0.00 3.16
4466 4741 3.062504 ACACGTCGTGGTTTTAGTTCAAC 59.937 43.478 27.77 0.00 37.94 3.18
4467 4742 3.260740 ACACGTCGTGGTTTTAGTTCAA 58.739 40.909 27.77 0.00 37.94 2.69
4468 4743 2.891112 ACACGTCGTGGTTTTAGTTCA 58.109 42.857 27.77 0.00 37.94 3.18
4469 4744 5.388225 TTTACACGTCGTGGTTTTAGTTC 57.612 39.130 27.77 0.00 37.94 3.01
4470 4745 5.332506 CGATTTACACGTCGTGGTTTTAGTT 60.333 40.000 27.77 8.09 37.94 2.24
4471 4746 4.148696 CGATTTACACGTCGTGGTTTTAGT 59.851 41.667 27.77 8.80 37.94 2.24
4472 4747 4.433283 CCGATTTACACGTCGTGGTTTTAG 60.433 45.833 27.77 14.76 37.94 1.85
4473 4748 3.428198 CCGATTTACACGTCGTGGTTTTA 59.572 43.478 27.77 9.58 37.94 1.52
4474 4749 2.221517 CCGATTTACACGTCGTGGTTTT 59.778 45.455 27.77 10.59 37.94 2.43
4475 4750 1.794116 CCGATTTACACGTCGTGGTTT 59.206 47.619 27.77 10.95 37.94 3.27
4476 4751 1.000385 TCCGATTTACACGTCGTGGTT 60.000 47.619 27.77 11.67 37.94 3.67
4477 4752 0.597568 TCCGATTTACACGTCGTGGT 59.402 50.000 27.77 16.04 37.94 4.16
4478 4753 1.387756 GTTCCGATTTACACGTCGTGG 59.612 52.381 27.77 9.64 37.94 4.94
4479 4754 2.052891 TGTTCCGATTTACACGTCGTG 58.947 47.619 23.40 23.40 39.75 4.35
4480 4755 2.030893 TCTGTTCCGATTTACACGTCGT 60.031 45.455 0.00 0.00 36.17 4.34
4481 4756 2.587956 TCTGTTCCGATTTACACGTCG 58.412 47.619 0.00 0.00 37.58 5.12
4482 4757 2.921754 CCTCTGTTCCGATTTACACGTC 59.078 50.000 0.00 0.00 0.00 4.34
4483 4758 2.353406 CCCTCTGTTCCGATTTACACGT 60.353 50.000 0.00 0.00 0.00 4.49
4484 4759 2.094390 TCCCTCTGTTCCGATTTACACG 60.094 50.000 0.00 0.00 0.00 4.49
4485 4760 3.056035 ACTCCCTCTGTTCCGATTTACAC 60.056 47.826 0.00 0.00 0.00 2.90
4486 4761 3.170717 ACTCCCTCTGTTCCGATTTACA 58.829 45.455 0.00 0.00 0.00 2.41
4487 4762 3.889520 ACTCCCTCTGTTCCGATTTAC 57.110 47.619 0.00 0.00 0.00 2.01
4488 4763 4.346730 TGTACTCCCTCTGTTCCGATTTA 58.653 43.478 0.00 0.00 0.00 1.40
4489 4764 3.170717 TGTACTCCCTCTGTTCCGATTT 58.829 45.455 0.00 0.00 0.00 2.17
4490 4765 2.816411 TGTACTCCCTCTGTTCCGATT 58.184 47.619 0.00 0.00 0.00 3.34
4491 4766 2.526888 TGTACTCCCTCTGTTCCGAT 57.473 50.000 0.00 0.00 0.00 4.18
4492 4767 2.297698 TTGTACTCCCTCTGTTCCGA 57.702 50.000 0.00 0.00 0.00 4.55
4493 4768 3.056107 TGATTTGTACTCCCTCTGTTCCG 60.056 47.826 0.00 0.00 0.00 4.30
4494 4769 4.508662 CTGATTTGTACTCCCTCTGTTCC 58.491 47.826 0.00 0.00 0.00 3.62
4495 4770 4.223032 TCCTGATTTGTACTCCCTCTGTTC 59.777 45.833 0.00 0.00 0.00 3.18
4496 4771 4.168101 TCCTGATTTGTACTCCCTCTGTT 58.832 43.478 0.00 0.00 0.00 3.16
4497 4772 3.791320 TCCTGATTTGTACTCCCTCTGT 58.209 45.455 0.00 0.00 0.00 3.41
4498 4773 5.104776 TGAATCCTGATTTGTACTCCCTCTG 60.105 44.000 0.00 0.00 0.00 3.35
4499 4774 5.032846 TGAATCCTGATTTGTACTCCCTCT 58.967 41.667 0.00 0.00 0.00 3.69
4500 4775 5.359194 TGAATCCTGATTTGTACTCCCTC 57.641 43.478 0.00 0.00 0.00 4.30
4501 4776 4.164988 CCTGAATCCTGATTTGTACTCCCT 59.835 45.833 0.00 0.00 0.00 4.20
4502 4777 4.164221 TCCTGAATCCTGATTTGTACTCCC 59.836 45.833 0.00 0.00 0.00 4.30
4503 4778 5.119694 GTCCTGAATCCTGATTTGTACTCC 58.880 45.833 0.00 0.00 0.00 3.85
4504 4779 5.582665 GTGTCCTGAATCCTGATTTGTACTC 59.417 44.000 0.00 0.00 0.00 2.59
4505 4780 5.491982 GTGTCCTGAATCCTGATTTGTACT 58.508 41.667 0.00 0.00 0.00 2.73
4506 4781 4.636206 GGTGTCCTGAATCCTGATTTGTAC 59.364 45.833 0.00 0.00 0.00 2.90
4558 4869 2.095059 CAGCATAGTCAGTTTTGGCACC 60.095 50.000 0.00 0.00 0.00 5.01
4596 4907 5.122554 TGTTGCACCTGTATTGTTATTACCG 59.877 40.000 0.00 0.00 0.00 4.02
4597 4908 6.503589 TGTTGCACCTGTATTGTTATTACC 57.496 37.500 0.00 0.00 0.00 2.85
4633 4945 2.925563 GTGGCATTGCTTATTTCACAGC 59.074 45.455 8.82 0.00 36.49 4.40
4704 5018 1.850377 TGTTTTTGTGAATGCCTGCG 58.150 45.000 0.00 0.00 0.00 5.18
4823 5137 1.226491 GCGCAGTGATGTTGCCATC 60.226 57.895 0.30 0.00 46.41 3.51
4826 5140 2.482374 GAGCGCAGTGATGTTGCC 59.518 61.111 11.47 0.00 38.31 4.52
4890 5204 3.915437 TGAACTCCCTTTTGAAATCGC 57.085 42.857 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.