Multiple sequence alignment - TraesCS2B01G091200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G091200 chr2B 100.000 4656 0 0 1 4656 52602245 52597590 0.000000e+00 8599.0
1 TraesCS2B01G091200 chr2B 92.648 2054 100 28 848 2886 52348013 52350030 0.000000e+00 2909.0
2 TraesCS2B01G091200 chr2B 92.643 1332 74 9 2881 4207 52350207 52351519 0.000000e+00 1895.0
3 TraesCS2B01G091200 chr2B 89.771 567 46 9 1 557 723048417 723047853 0.000000e+00 715.0
4 TraesCS2B01G091200 chr2B 100.000 175 0 0 4972 5146 52597274 52597100 1.790000e-84 324.0
5 TraesCS2B01G091200 chr2B 95.349 172 8 0 4975 5146 52578780 52578609 1.830000e-69 274.0
6 TraesCS2B01G091200 chr2A 88.426 3672 254 78 842 4422 34093434 34089843 0.000000e+00 4268.0
7 TraesCS2B01G091200 chr2A 90.741 54 2 3 2549 2600 7522052 7522000 9.250000e-08 69.4
8 TraesCS2B01G091200 chr2D 90.206 2236 149 38 2203 4422 31888633 31886452 0.000000e+00 2852.0
9 TraesCS2B01G091200 chr2D 93.550 1566 88 7 2630 4185 32029810 32028248 0.000000e+00 2320.0
10 TraesCS2B01G091200 chr2D 89.523 1613 91 45 1612 3194 31950458 31948894 0.000000e+00 1971.0
11 TraesCS2B01G091200 chr2D 92.364 1100 57 13 841 1933 31889908 31888829 0.000000e+00 1541.0
12 TraesCS2B01G091200 chr2D 94.271 803 40 2 3337 4134 31948898 31948097 0.000000e+00 1223.0
13 TraesCS2B01G091200 chr2D 84.032 1240 101 32 842 2005 32031610 32030392 0.000000e+00 1103.0
14 TraesCS2B01G091200 chr2D 88.407 854 64 21 1 845 37923324 37922497 0.000000e+00 996.0
15 TraesCS2B01G091200 chr2D 88.331 617 50 13 845 1449 31951165 31950559 0.000000e+00 721.0
16 TraesCS2B01G091200 chr2D 85.331 484 56 14 344 823 37529555 37529083 2.150000e-133 486.0
17 TraesCS2B01G091200 chr2D 84.534 472 59 13 331 795 651638842 651638378 6.070000e-124 455.0
18 TraesCS2B01G091200 chr2D 88.129 278 13 5 2226 2503 32030228 32029971 3.870000e-81 313.0
19 TraesCS2B01G091200 chr2D 94.220 173 9 1 4972 5143 89284051 89283879 3.950000e-66 263.0
20 TraesCS2B01G091200 chr2D 95.092 163 8 0 2206 2368 32030390 32030228 1.840000e-64 257.0
21 TraesCS2B01G091200 chr2D 88.500 200 10 5 1987 2175 31888827 31888630 4.010000e-56 230.0
22 TraesCS2B01G091200 chr6D 87.234 846 84 19 1 830 59436304 59435467 0.000000e+00 942.0
23 TraesCS2B01G091200 chr6D 95.783 166 6 1 4974 5138 436537334 436537499 3.050000e-67 267.0
24 TraesCS2B01G091200 chr3A 88.462 780 60 15 31 798 15564206 15563445 0.000000e+00 915.0
25 TraesCS2B01G091200 chr4D 86.207 841 79 23 1 820 368507527 368508351 0.000000e+00 876.0
26 TraesCS2B01G091200 chr6B 86.995 792 75 20 1 781 345628231 345627457 0.000000e+00 867.0
27 TraesCS2B01G091200 chr6B 85.785 809 83 18 1 787 636973007 636972209 0.000000e+00 828.0
28 TraesCS2B01G091200 chr6B 85.750 800 67 27 3 791 213303994 213304757 0.000000e+00 802.0
29 TraesCS2B01G091200 chr6B 83.562 73 7 5 2532 2600 374109283 374109212 4.300000e-06 63.9
30 TraesCS2B01G091200 chr7A 85.409 843 78 27 1 820 411541540 411542360 0.000000e+00 833.0
31 TraesCS2B01G091200 chr7A 85.833 480 56 11 344 820 704843437 704843907 2.770000e-137 499.0
32 TraesCS2B01G091200 chr7A 95.349 43 2 0 781 823 510896118 510896076 9.250000e-08 69.4
33 TraesCS2B01G091200 chr5B 92.992 528 31 3 1 523 488214727 488214201 0.000000e+00 765.0
34 TraesCS2B01G091200 chr5B 85.216 487 50 14 344 818 507993028 507992552 1.000000e-131 481.0
35 TraesCS2B01G091200 chr5B 86.719 256 25 4 576 823 488214004 488213750 5.080000e-70 276.0
36 TraesCS2B01G091200 chr5B 80.669 269 47 5 1084 1351 680767259 680767523 2.430000e-48 204.0
37 TraesCS2B01G091200 chr5B 86.567 134 14 4 2647 2778 325934833 325934702 1.490000e-30 145.0
38 TraesCS2B01G091200 chr5B 93.617 47 2 1 2549 2594 458719778 458719824 9.250000e-08 69.4
39 TraesCS2B01G091200 chr5B 90.566 53 3 2 2549 2600 620236152 620236101 9.250000e-08 69.4
40 TraesCS2B01G091200 chr7D 85.396 493 48 17 344 823 122524207 122523726 1.670000e-134 490.0
41 TraesCS2B01G091200 chr7D 90.909 220 18 2 4438 4656 597508485 597508703 1.400000e-75 294.0
42 TraesCS2B01G091200 chr7D 89.212 241 16 6 4423 4656 601143066 601142829 5.040000e-75 292.0
43 TraesCS2B01G091200 chr7D 97.647 170 3 1 4972 5140 618899991 618900160 1.810000e-74 291.0
44 TraesCS2B01G091200 chr7D 96.471 170 5 1 4972 5140 557975093 557975262 3.920000e-71 279.0
45 TraesCS2B01G091200 chr7B 87.215 438 45 10 391 823 705729613 705729182 5.990000e-134 488.0
46 TraesCS2B01G091200 chr7B 89.474 57 3 3 2549 2604 660809736 660809682 9.250000e-08 69.4
47 TraesCS2B01G091200 chr5D 91.964 224 12 4 4429 4652 555505608 555505825 5.000000e-80 309.0
48 TraesCS2B01G091200 chr5D 94.118 170 9 1 4972 5140 108342890 108343059 1.840000e-64 257.0
49 TraesCS2B01G091200 chr5D 86.574 216 29 0 1135 1350 129861202 129860987 6.660000e-59 239.0
50 TraesCS2B01G091200 chr5D 87.121 132 17 0 2647 2778 286928993 286928862 3.210000e-32 150.0
51 TraesCS2B01G091200 chr5A 90.830 229 15 4 4428 4656 647746790 647746568 8.370000e-78 302.0
52 TraesCS2B01G091200 chr5A 83.942 137 18 4 2647 2781 379020369 379020235 1.500000e-25 128.0
53 TraesCS2B01G091200 chr3D 90.830 229 16 4 4429 4656 83730728 83730952 8.370000e-78 302.0
54 TraesCS2B01G091200 chr3D 90.086 232 16 3 4423 4651 121908176 121907949 1.400000e-75 294.0
55 TraesCS2B01G091200 chr3D 91.204 216 15 4 4441 4656 381000639 381000428 1.810000e-74 291.0
56 TraesCS2B01G091200 chr3D 89.868 227 19 2 4423 4647 480130089 480130313 6.520000e-74 289.0
57 TraesCS2B01G091200 chr3D 94.706 170 8 1 4972 5140 480130411 480130580 3.950000e-66 263.0
58 TraesCS2B01G091200 chr3B 89.520 229 20 4 4429 4656 765781646 765781871 2.340000e-73 287.0
59 TraesCS2B01G091200 chr3B 92.157 51 3 1 2544 2594 341891984 341892033 2.570000e-08 71.3
60 TraesCS2B01G091200 chr1B 95.906 171 6 1 4974 5143 512170548 512170378 5.080000e-70 276.0
61 TraesCS2B01G091200 chr1B 88.710 62 4 3 2535 2594 323632993 323632933 7.150000e-09 73.1
62 TraesCS2B01G091200 chr6A 94.118 170 9 1 4972 5140 74824019 74824188 1.840000e-64 257.0
63 TraesCS2B01G091200 chr4A 83.691 233 36 2 1123 1354 629424352 629424121 8.680000e-53 219.0
64 TraesCS2B01G091200 chr4A 80.882 272 50 2 1084 1354 629436324 629436054 4.040000e-51 213.0
65 TraesCS2B01G091200 chr4B 95.745 47 1 1 2549 2594 17096930 17096976 1.990000e-09 75.0
66 TraesCS2B01G091200 chr4B 92.157 51 3 1 2549 2599 413165297 413165346 2.570000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G091200 chr2B 52597100 52602245 5145 True 4461.50 8599 100.000000 1 5146 2 chr2B.!!$R3 5145
1 TraesCS2B01G091200 chr2B 52348013 52351519 3506 False 2402.00 2909 92.645500 848 4207 2 chr2B.!!$F1 3359
2 TraesCS2B01G091200 chr2B 723047853 723048417 564 True 715.00 715 89.771000 1 557 1 chr2B.!!$R2 556
3 TraesCS2B01G091200 chr2A 34089843 34093434 3591 True 4268.00 4268 88.426000 842 4422 1 chr2A.!!$R2 3580
4 TraesCS2B01G091200 chr2D 31886452 31889908 3456 True 1541.00 2852 90.356667 841 4422 3 chr2D.!!$R5 3581
5 TraesCS2B01G091200 chr2D 31948097 31951165 3068 True 1305.00 1971 90.708333 845 4134 3 chr2D.!!$R6 3289
6 TraesCS2B01G091200 chr2D 32028248 32031610 3362 True 998.25 2320 90.200750 842 4185 4 chr2D.!!$R7 3343
7 TraesCS2B01G091200 chr2D 37922497 37923324 827 True 996.00 996 88.407000 1 845 1 chr2D.!!$R2 844
8 TraesCS2B01G091200 chr6D 59435467 59436304 837 True 942.00 942 87.234000 1 830 1 chr6D.!!$R1 829
9 TraesCS2B01G091200 chr3A 15563445 15564206 761 True 915.00 915 88.462000 31 798 1 chr3A.!!$R1 767
10 TraesCS2B01G091200 chr4D 368507527 368508351 824 False 876.00 876 86.207000 1 820 1 chr4D.!!$F1 819
11 TraesCS2B01G091200 chr6B 345627457 345628231 774 True 867.00 867 86.995000 1 781 1 chr6B.!!$R1 780
12 TraesCS2B01G091200 chr6B 636972209 636973007 798 True 828.00 828 85.785000 1 787 1 chr6B.!!$R3 786
13 TraesCS2B01G091200 chr6B 213303994 213304757 763 False 802.00 802 85.750000 3 791 1 chr6B.!!$F1 788
14 TraesCS2B01G091200 chr7A 411541540 411542360 820 False 833.00 833 85.409000 1 820 1 chr7A.!!$F1 819
15 TraesCS2B01G091200 chr5B 488213750 488214727 977 True 520.50 765 89.855500 1 823 2 chr5B.!!$R4 822

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 99 1.034838 AAACAACCAACGAGCCAGCA 61.035 50.000 0.00 0.0 0.0 4.41 F
586 783 1.213182 TGAGGGGTACAAACTGCAACA 59.787 47.619 0.00 0.0 0.0 3.33 F
747 1013 1.276989 TCAGCAGATCATCAGTGCACA 59.723 47.619 21.04 0.0 39.8 4.57 F
1015 1311 1.514014 CGCATGGCTTGGTTTACGC 60.514 57.895 2.33 0.0 0.0 4.42 F
2682 3276 1.135333 GGGAGTACAAGAGCCTCGAAG 59.865 57.143 0.00 0.0 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1050 1349 1.109920 ATGACGAGGGGATCACGAGG 61.110 60.000 0.00 0.0 0.00 4.63 R
2295 2697 2.093306 TGTGTCCCTAAAGCGACATG 57.907 50.000 1.11 0.0 40.88 3.21 R
2682 3276 1.136305 ACAAGCATGCATCTTGCCATC 59.864 47.619 25.72 0.0 44.23 3.51 R
2957 3735 7.258441 TGTATGCTGAACTGACTGAGTTATAC 58.742 38.462 0.00 0.0 45.48 1.47 R
4595 5531 0.172578 TGATCAACGCTAGGTCGTGG 59.827 55.000 0.00 0.0 42.46 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.146745 ACTGTTTAGAAACTTGGTCGGT 57.853 40.909 6.69 0.00 39.59 4.69
69 72 4.197559 AGAGCAATGGGATAGAGAGAGT 57.802 45.455 0.00 0.00 0.00 3.24
93 99 1.034838 AAACAACCAACGAGCCAGCA 61.035 50.000 0.00 0.00 0.00 4.41
272 281 2.738743 ACCCCGATCAAAGAATTGCAT 58.261 42.857 0.00 0.00 36.45 3.96
300 312 4.484537 AGAGACAGATCAAATGGACTGG 57.515 45.455 0.00 0.00 35.08 4.00
357 369 9.820229 TGAGTTTTAACAATTTCGATACATGAC 57.180 29.630 0.00 0.00 0.00 3.06
393 405 2.923655 ACACGTTGCAGAGATGAATACG 59.076 45.455 0.59 0.59 0.00 3.06
407 419 7.330946 AGAGATGAATACGAATCAAAACAACGA 59.669 33.333 0.00 0.00 0.00 3.85
583 780 2.738587 TTTGAGGGGTACAAACTGCA 57.261 45.000 0.00 0.00 33.25 4.41
584 781 2.738587 TTGAGGGGTACAAACTGCAA 57.261 45.000 0.00 0.00 0.00 4.08
585 782 1.975660 TGAGGGGTACAAACTGCAAC 58.024 50.000 0.00 0.00 0.00 4.17
586 783 1.213182 TGAGGGGTACAAACTGCAACA 59.787 47.619 0.00 0.00 0.00 3.33
587 784 2.303175 GAGGGGTACAAACTGCAACAA 58.697 47.619 0.00 0.00 0.00 2.83
588 785 2.028876 AGGGGTACAAACTGCAACAAC 58.971 47.619 0.00 0.00 0.00 3.32
589 786 2.028876 GGGGTACAAACTGCAACAACT 58.971 47.619 0.00 0.00 0.00 3.16
590 787 2.223711 GGGGTACAAACTGCAACAACTG 60.224 50.000 0.00 0.00 0.00 3.16
622 821 5.894298 TGGAGACAATACATCAATAGGCT 57.106 39.130 0.00 0.00 37.44 4.58
747 1013 1.276989 TCAGCAGATCATCAGTGCACA 59.723 47.619 21.04 0.00 39.80 4.57
840 1106 4.576053 TGAGATGTGAAATAGCAAATCCGG 59.424 41.667 0.00 0.00 33.79 5.14
883 1149 1.670791 AAAAACCGGCGAGTCAAAGA 58.329 45.000 9.30 0.00 0.00 2.52
945 1212 5.079397 CGCGAGCTATATATATCACGTGA 57.921 43.478 22.48 22.48 33.02 4.35
946 1213 5.680893 CGCGAGCTATATATATCACGTGAT 58.319 41.667 31.93 31.93 38.51 3.06
947 1214 6.818416 CGCGAGCTATATATATCACGTGATA 58.182 40.000 33.83 33.83 40.85 2.15
948 1215 6.732836 CGCGAGCTATATATATCACGTGATAC 59.267 42.308 34.29 21.67 39.57 2.24
1015 1311 1.514014 CGCATGGCTTGGTTTACGC 60.514 57.895 2.33 0.00 0.00 4.42
1050 1349 3.556004 CCTTGTTCCTCCTCTTCTCACAC 60.556 52.174 0.00 0.00 0.00 3.82
1065 1364 2.052690 ACACCTCGTGATCCCCTCG 61.053 63.158 0.00 0.00 36.96 4.63
1141 1440 3.588057 TTCGAGTCATGGCTGCGCA 62.588 57.895 10.98 10.98 0.00 6.09
1400 1720 5.867716 GTCAGTCGTCACTAACCATTGTTAT 59.132 40.000 0.00 0.00 36.40 1.89
1449 1779 6.043358 TGAACCCGTATGATCCCAACATAATA 59.957 38.462 0.00 0.00 33.04 0.98
1525 1868 9.459640 CAGGATGTGAATGCTAATTCTATTTTG 57.540 33.333 0.63 0.00 42.40 2.44
1566 1909 6.875926 GCTAATGCAAGGTTGTTATGAAAG 57.124 37.500 0.00 0.00 39.41 2.62
1696 2040 2.231478 AGGTCACCTTGTGATACTGACG 59.769 50.000 0.00 0.00 44.63 4.35
1748 2103 5.821516 ACGTCTACATCTCTTTCTTCGAT 57.178 39.130 0.00 0.00 0.00 3.59
1751 2106 7.091443 ACGTCTACATCTCTTTCTTCGATTTT 58.909 34.615 0.00 0.00 0.00 1.82
1771 2126 5.808366 TTTGCACCAATGTGGGTTTAATA 57.192 34.783 0.00 0.00 43.37 0.98
1772 2127 6.365970 TTTGCACCAATGTGGGTTTAATAT 57.634 33.333 0.00 0.00 43.37 1.28
1779 2134 6.039270 ACCAATGTGGGTTTAATATCATCGTG 59.961 38.462 0.00 0.00 43.37 4.35
1872 2254 6.074356 GCCATCACCGATTAATTATTGTTTGC 60.074 38.462 0.00 0.00 0.00 3.68
1933 2319 5.995897 ACTTAACCACATAGGAAACACAGAC 59.004 40.000 0.00 0.00 41.22 3.51
1976 2362 5.328565 AGTGGATAGATCAGCAGCTACATA 58.671 41.667 0.00 0.00 0.00 2.29
1985 2371 2.874701 CAGCAGCTACATAAGGCGAAAT 59.125 45.455 0.00 0.00 0.00 2.17
2295 2697 5.731591 ACCTAACTACATAGGAAACACAGC 58.268 41.667 7.34 0.00 44.46 4.40
2352 2754 3.270877 GCCTACAATGAGACGAAATGGT 58.729 45.455 0.00 0.00 0.00 3.55
2544 3098 9.424319 GATTGTATCCGAGAATAATCTTTGCTA 57.576 33.333 0.00 0.00 35.54 3.49
2549 3103 8.764524 ATCCGAGAATAATCTTTGCTATACAC 57.235 34.615 0.00 0.00 35.54 2.90
2551 3105 9.074576 TCCGAGAATAATCTTTGCTATACACTA 57.925 33.333 0.00 0.00 35.54 2.74
2552 3106 9.130312 CCGAGAATAATCTTTGCTATACACTAC 57.870 37.037 0.00 0.00 35.54 2.73
2553 3107 9.130312 CGAGAATAATCTTTGCTATACACTACC 57.870 37.037 0.00 0.00 35.54 3.18
2557 3111 9.988815 AATAATCTTTGCTATACACTACCTCTG 57.011 33.333 0.00 0.00 0.00 3.35
2559 3113 6.452494 TCTTTGCTATACACTACCTCTGTC 57.548 41.667 0.00 0.00 0.00 3.51
2560 3114 5.360144 TCTTTGCTATACACTACCTCTGTCC 59.640 44.000 0.00 0.00 0.00 4.02
2561 3115 3.563223 TGCTATACACTACCTCTGTCCC 58.437 50.000 0.00 0.00 0.00 4.46
2562 3116 3.053170 TGCTATACACTACCTCTGTCCCA 60.053 47.826 0.00 0.00 0.00 4.37
2564 3118 5.163023 TGCTATACACTACCTCTGTCCCATA 60.163 44.000 0.00 0.00 0.00 2.74
2565 3119 5.773680 GCTATACACTACCTCTGTCCCATAA 59.226 44.000 0.00 0.00 0.00 1.90
2566 3120 6.437793 GCTATACACTACCTCTGTCCCATAAT 59.562 42.308 0.00 0.00 0.00 1.28
2567 3121 7.614583 GCTATACACTACCTCTGTCCCATAATA 59.385 40.741 0.00 0.00 0.00 0.98
2568 3122 9.702253 CTATACACTACCTCTGTCCCATAATAT 57.298 37.037 0.00 0.00 0.00 1.28
2571 3125 8.423906 ACACTACCTCTGTCCCATAATATAAG 57.576 38.462 0.00 0.00 0.00 1.73
2572 3126 8.232412 ACACTACCTCTGTCCCATAATATAAGA 58.768 37.037 0.00 0.00 0.00 2.10
2573 3127 9.090103 CACTACCTCTGTCCCATAATATAAGAA 57.910 37.037 0.00 0.00 0.00 2.52
2574 3128 9.845214 ACTACCTCTGTCCCATAATATAAGAAT 57.155 33.333 0.00 0.00 0.00 2.40
2576 3130 8.511748 ACCTCTGTCCCATAATATAAGAATGT 57.488 34.615 0.00 0.00 0.00 2.71
2577 3131 8.949421 ACCTCTGTCCCATAATATAAGAATGTT 58.051 33.333 0.00 0.00 0.00 2.71
2578 3132 9.799106 CCTCTGTCCCATAATATAAGAATGTTT 57.201 33.333 0.00 0.00 0.00 2.83
2682 3276 1.135333 GGGAGTACAAGAGCCTCGAAG 59.865 57.143 0.00 0.00 0.00 3.79
2957 3735 2.674380 GGCACCAGGGCTCAACAG 60.674 66.667 0.00 0.00 39.42 3.16
2981 3759 7.433719 CAGTATAACTCAGTCAGTTCAGCATAC 59.566 40.741 0.00 0.00 42.07 2.39
2990 3768 8.478066 TCAGTCAGTTCAGCATACAACTAATAT 58.522 33.333 0.00 0.00 31.41 1.28
3138 3917 0.106769 TCAAGCTTGTGTTCCAGCCA 60.107 50.000 25.19 0.00 0.00 4.75
3210 3989 3.873361 TCGATGATGTCTCTGCCATTTTC 59.127 43.478 0.00 0.00 0.00 2.29
3256 4035 2.043752 TAGGGGTCGTCGCATCCA 60.044 61.111 0.00 0.00 0.00 3.41
3267 4046 4.864334 GCATCCAGGCCAGGTCCG 62.864 72.222 14.79 5.05 0.00 4.79
3276 4055 2.359975 CCAGGTCCGTTCCTTGCC 60.360 66.667 0.00 0.00 35.37 4.52
3309 4088 4.619227 ACCGCAACTGTCACCGGG 62.619 66.667 6.32 0.00 44.70 5.73
3501 4427 4.524802 AATCTGCATATGAAACCCCTGA 57.475 40.909 6.97 0.00 0.00 3.86
3505 4431 4.018506 TCTGCATATGAAACCCCTGAGAAA 60.019 41.667 6.97 0.00 0.00 2.52
3556 4482 2.910688 TCTTTCAGGTGGTGTCTGTC 57.089 50.000 0.00 0.00 34.15 3.51
3643 4569 1.137675 CGGAGCATGACAGATGAAGGA 59.862 52.381 0.00 0.00 0.00 3.36
3682 4608 2.258109 AGGGTGAAAGAGGTAGGACAC 58.742 52.381 0.00 0.00 0.00 3.67
3709 4635 0.256752 CACCCCATGCATTCTCTCCA 59.743 55.000 0.00 0.00 0.00 3.86
3758 4685 3.074412 GTCGACCATTTGACATGAGGTT 58.926 45.455 3.51 0.00 36.27 3.50
3774 4701 0.798776 GGTTCTGACAACCTGATGCG 59.201 55.000 0.00 0.00 37.34 4.73
3775 4702 0.798776 GTTCTGACAACCTGATGCGG 59.201 55.000 0.00 0.00 0.00 5.69
3776 4703 0.321564 TTCTGACAACCTGATGCGGG 60.322 55.000 0.00 0.00 35.68 6.13
3777 4704 1.191489 TCTGACAACCTGATGCGGGA 61.191 55.000 0.00 0.00 33.36 5.14
3778 4705 0.321564 CTGACAACCTGATGCGGGAA 60.322 55.000 0.00 0.00 33.36 3.97
3779 4706 0.321564 TGACAACCTGATGCGGGAAG 60.322 55.000 0.00 0.00 33.36 3.46
3781 4708 1.002134 CAACCTGATGCGGGAAGGT 60.002 57.895 0.00 0.00 46.40 3.50
3842 4774 4.043310 ACTGTGGATTTCATGGAGGAGAAA 59.957 41.667 0.00 0.00 38.04 2.52
4010 4942 0.734889 CGGGCGCATTCTTCTTCATT 59.265 50.000 10.83 0.00 0.00 2.57
4136 5068 3.356290 GGTTGCCATTGAGTACCTGAAT 58.644 45.455 0.00 0.00 0.00 2.57
4214 5150 6.421202 GTGAAAATCCTCTGATGTCCGTATAC 59.579 42.308 0.00 0.00 0.00 1.47
4225 5161 9.516546 TCTGATGTCCGTATACTGTTAGATATT 57.483 33.333 0.56 0.00 0.00 1.28
4354 5290 7.871973 TCAGTAATTTACAAGTGTAGCCGTTTA 59.128 33.333 9.15 0.00 0.00 2.01
4355 5291 8.497554 CAGTAATTTACAAGTGTAGCCGTTTAA 58.502 33.333 9.15 0.00 0.00 1.52
4406 5342 2.347114 CCAGACATGACACCCGCA 59.653 61.111 0.00 0.00 0.00 5.69
4422 5358 4.154737 CACCCGCATGTATATTCATCAAGG 59.845 45.833 0.00 0.00 0.00 3.61
4423 5359 4.041567 ACCCGCATGTATATTCATCAAGGA 59.958 41.667 0.00 0.00 0.00 3.36
4424 5360 4.633126 CCCGCATGTATATTCATCAAGGAG 59.367 45.833 0.00 0.00 0.00 3.69
4425 5361 4.093998 CCGCATGTATATTCATCAAGGAGC 59.906 45.833 0.00 0.00 0.00 4.70
4426 5362 4.093998 CGCATGTATATTCATCAAGGAGCC 59.906 45.833 0.00 0.00 0.00 4.70
4427 5363 5.251764 GCATGTATATTCATCAAGGAGCCT 58.748 41.667 0.00 0.00 0.00 4.58
4428 5364 5.709164 GCATGTATATTCATCAAGGAGCCTT 59.291 40.000 0.00 0.00 36.60 4.35
4435 5371 3.583383 CAAGGAGCCTTGCTTCGG 58.417 61.111 15.66 0.00 45.38 4.30
4436 5372 1.302832 CAAGGAGCCTTGCTTCGGT 60.303 57.895 15.66 0.00 45.38 4.69
4437 5373 0.036388 CAAGGAGCCTTGCTTCGGTA 60.036 55.000 15.66 0.00 45.38 4.02
4438 5374 0.036294 AAGGAGCCTTGCTTCGGTAC 60.036 55.000 0.00 0.00 39.54 3.34
4439 5375 1.192146 AGGAGCCTTGCTTCGGTACA 61.192 55.000 0.00 0.00 39.54 2.90
4440 5376 0.321298 GGAGCCTTGCTTCGGTACAA 60.321 55.000 0.00 0.00 39.88 2.41
4441 5377 0.796927 GAGCCTTGCTTCGGTACAAC 59.203 55.000 0.00 0.00 39.88 3.32
4442 5378 0.605589 AGCCTTGCTTCGGTACAACC 60.606 55.000 0.00 0.00 33.89 3.77
4443 5379 1.583495 GCCTTGCTTCGGTACAACCC 61.583 60.000 0.00 0.00 33.75 4.11
4444 5380 0.958876 CCTTGCTTCGGTACAACCCC 60.959 60.000 0.00 0.00 33.75 4.95
4445 5381 0.958876 CTTGCTTCGGTACAACCCCC 60.959 60.000 0.00 0.00 33.75 5.40
4446 5382 2.435410 GCTTCGGTACAACCCCCG 60.435 66.667 0.00 0.00 45.55 5.73
4447 5383 2.435410 CTTCGGTACAACCCCCGC 60.435 66.667 0.00 0.00 43.87 6.13
4448 5384 2.924101 TTCGGTACAACCCCCGCT 60.924 61.111 0.00 0.00 43.87 5.52
4449 5385 2.459202 CTTCGGTACAACCCCCGCTT 62.459 60.000 0.00 0.00 43.87 4.68
4450 5386 1.190833 TTCGGTACAACCCCCGCTTA 61.191 55.000 0.00 0.00 43.87 3.09
4451 5387 1.190833 TCGGTACAACCCCCGCTTAA 61.191 55.000 0.00 0.00 43.87 1.85
4452 5388 1.020861 CGGTACAACCCCCGCTTAAC 61.021 60.000 0.00 0.00 37.43 2.01
4453 5389 1.020861 GGTACAACCCCCGCTTAACG 61.021 60.000 0.00 0.00 34.90 3.18
4454 5390 0.320683 GTACAACCCCCGCTTAACGT 60.321 55.000 0.00 0.00 41.42 3.99
4455 5391 1.067213 GTACAACCCCCGCTTAACGTA 60.067 52.381 0.00 0.00 41.42 3.57
4456 5392 0.614812 ACAACCCCCGCTTAACGTAT 59.385 50.000 0.00 0.00 41.42 3.06
4457 5393 1.830477 ACAACCCCCGCTTAACGTATA 59.170 47.619 0.00 0.00 41.42 1.47
4458 5394 2.235898 ACAACCCCCGCTTAACGTATAA 59.764 45.455 0.00 0.00 41.42 0.98
4459 5395 2.867975 CAACCCCCGCTTAACGTATAAG 59.132 50.000 11.04 11.04 41.42 1.73
4460 5396 1.202568 ACCCCCGCTTAACGTATAAGC 60.203 52.381 22.06 22.06 44.61 3.09
4468 5404 5.525536 GCTTAACGTATAAGCGCATTTTG 57.474 39.130 11.47 0.00 40.19 2.44
4469 5405 4.436523 GCTTAACGTATAAGCGCATTTTGG 59.563 41.667 11.47 0.00 40.19 3.28
4470 5406 3.414549 AACGTATAAGCGCATTTTGGG 57.585 42.857 11.47 0.00 34.88 4.12
4493 5429 5.702622 CATATGATGCTTAACGTATCCCG 57.297 43.478 0.00 0.00 44.03 5.14
4502 5438 4.238385 CGTATCCCGTGCCGTATG 57.762 61.111 0.00 0.00 0.00 2.39
4503 5439 2.019951 CGTATCCCGTGCCGTATGC 61.020 63.158 0.00 0.00 41.77 3.14
4504 5440 2.019951 GTATCCCGTGCCGTATGCG 61.020 63.158 0.00 0.00 45.60 4.73
4515 5451 2.280524 GTATGCGGCGTGCCCATA 60.281 61.111 9.37 14.29 45.60 2.74
4516 5452 1.890041 GTATGCGGCGTGCCCATAA 60.890 57.895 17.83 5.91 45.60 1.90
4517 5453 1.153147 TATGCGGCGTGCCCATAAA 60.153 52.632 9.37 1.92 45.60 1.40
4518 5454 1.163420 TATGCGGCGTGCCCATAAAG 61.163 55.000 9.37 0.00 45.60 1.85
4519 5455 3.887868 GCGGCGTGCCCATAAAGG 61.888 66.667 9.37 0.00 37.76 3.11
4520 5456 2.437716 CGGCGTGCCCATAAAGGT 60.438 61.111 5.08 0.00 34.66 3.50
4521 5457 1.153329 CGGCGTGCCCATAAAGGTA 60.153 57.895 5.08 0.00 34.66 3.08
4522 5458 0.534203 CGGCGTGCCCATAAAGGTAT 60.534 55.000 5.08 0.00 34.66 2.73
4523 5459 1.270412 CGGCGTGCCCATAAAGGTATA 60.270 52.381 5.08 0.00 34.66 1.47
4524 5460 2.423577 GGCGTGCCCATAAAGGTATAG 58.576 52.381 0.00 0.00 34.66 1.31
4525 5461 1.804748 GCGTGCCCATAAAGGTATAGC 59.195 52.381 0.00 0.00 34.66 2.97
4526 5462 2.423577 CGTGCCCATAAAGGTATAGCC 58.576 52.381 0.00 0.00 34.66 3.93
4527 5463 2.423577 GTGCCCATAAAGGTATAGCCG 58.576 52.381 0.00 0.00 43.70 5.52
4528 5464 2.038033 GTGCCCATAAAGGTATAGCCGA 59.962 50.000 0.00 0.00 43.70 5.54
4529 5465 2.301870 TGCCCATAAAGGTATAGCCGAG 59.698 50.000 0.00 0.00 43.70 4.63
4530 5466 2.935676 GCCCATAAAGGTATAGCCGAGC 60.936 54.545 0.00 0.00 43.70 5.03
4531 5467 2.607187 CCATAAAGGTATAGCCGAGCG 58.393 52.381 0.00 0.00 43.70 5.03
4532 5468 1.993370 CATAAAGGTATAGCCGAGCGC 59.007 52.381 0.00 0.00 43.70 5.92
4533 5469 1.034356 TAAAGGTATAGCCGAGCGCA 58.966 50.000 11.47 0.00 43.70 6.09
4534 5470 0.529992 AAAGGTATAGCCGAGCGCAC 60.530 55.000 11.47 0.96 43.70 5.34
4535 5471 2.679132 AAGGTATAGCCGAGCGCACG 62.679 60.000 20.61 20.61 43.70 5.34
4561 5497 4.858433 CGATACGGCCGGTTCGCA 62.858 66.667 30.12 10.83 0.00 5.10
4562 5498 2.279918 GATACGGCCGGTTCGCAT 60.280 61.111 31.76 9.01 0.00 4.73
4563 5499 2.279918 ATACGGCCGGTTCGCATC 60.280 61.111 31.76 0.00 0.00 3.91
4564 5500 2.694829 GATACGGCCGGTTCGCATCT 62.695 60.000 31.76 7.29 30.30 2.90
4565 5501 1.457823 ATACGGCCGGTTCGCATCTA 61.458 55.000 31.76 9.62 0.00 1.98
4566 5502 2.340453 TACGGCCGGTTCGCATCTAC 62.340 60.000 31.76 0.00 0.00 2.59
4567 5503 2.588034 GGCCGGTTCGCATCTACC 60.588 66.667 1.90 0.00 0.00 3.18
4568 5504 2.588034 GCCGGTTCGCATCTACCC 60.588 66.667 1.90 0.00 0.00 3.69
4569 5505 2.108362 CCGGTTCGCATCTACCCC 59.892 66.667 0.00 0.00 0.00 4.95
4570 5506 2.108362 CGGTTCGCATCTACCCCC 59.892 66.667 0.00 0.00 0.00 5.40
4571 5507 2.432300 CGGTTCGCATCTACCCCCT 61.432 63.158 0.00 0.00 0.00 4.79
4572 5508 1.446366 GGTTCGCATCTACCCCCTC 59.554 63.158 0.00 0.00 0.00 4.30
4573 5509 1.446366 GTTCGCATCTACCCCCTCC 59.554 63.158 0.00 0.00 0.00 4.30
4574 5510 1.764854 TTCGCATCTACCCCCTCCC 60.765 63.158 0.00 0.00 0.00 4.30
4575 5511 3.616721 CGCATCTACCCCCTCCCG 61.617 72.222 0.00 0.00 0.00 5.14
4576 5512 3.942439 GCATCTACCCCCTCCCGC 61.942 72.222 0.00 0.00 0.00 6.13
4577 5513 3.242291 CATCTACCCCCTCCCGCC 61.242 72.222 0.00 0.00 0.00 6.13
4578 5514 4.936081 ATCTACCCCCTCCCGCCG 62.936 72.222 0.00 0.00 0.00 6.46
4587 5523 3.350612 CTCCCGCCGCGTGAAAAA 61.351 61.111 12.58 0.00 0.00 1.94
4605 5541 2.853235 AAAAAGGACCCACGACCTAG 57.147 50.000 0.00 0.00 35.25 3.02
4606 5542 0.323957 AAAAGGACCCACGACCTAGC 59.676 55.000 0.00 0.00 35.25 3.42
4607 5543 1.885163 AAAGGACCCACGACCTAGCG 61.885 60.000 0.00 0.00 35.25 4.26
4608 5544 3.066814 GGACCCACGACCTAGCGT 61.067 66.667 0.00 0.00 46.88 5.07
4609 5545 2.643232 GGACCCACGACCTAGCGTT 61.643 63.158 0.00 0.00 43.59 4.84
4610 5546 1.445582 GACCCACGACCTAGCGTTG 60.446 63.158 0.00 0.00 43.59 4.10
4611 5547 1.870055 GACCCACGACCTAGCGTTGA 61.870 60.000 0.00 0.00 43.59 3.18
4612 5548 1.255667 ACCCACGACCTAGCGTTGAT 61.256 55.000 0.00 0.00 43.59 2.57
4613 5549 0.527817 CCCACGACCTAGCGTTGATC 60.528 60.000 0.00 0.00 43.59 2.92
4614 5550 0.172578 CCACGACCTAGCGTTGATCA 59.827 55.000 0.00 0.00 43.59 2.92
4615 5551 1.269166 CACGACCTAGCGTTGATCAC 58.731 55.000 0.00 0.00 43.59 3.06
4624 5560 2.824041 GTTGATCACGCGGCCCAT 60.824 61.111 12.47 0.00 0.00 4.00
4625 5561 2.045438 TTGATCACGCGGCCCATT 60.045 55.556 12.47 0.00 0.00 3.16
4626 5562 2.112198 TTGATCACGCGGCCCATTC 61.112 57.895 12.47 0.00 0.00 2.67
4627 5563 3.279875 GATCACGCGGCCCATTCC 61.280 66.667 12.47 0.00 0.00 3.01
4628 5564 4.108299 ATCACGCGGCCCATTCCA 62.108 61.111 12.47 0.00 0.00 3.53
4629 5565 3.636929 ATCACGCGGCCCATTCCAA 62.637 57.895 12.47 0.00 0.00 3.53
4630 5566 4.114997 CACGCGGCCCATTCCAAC 62.115 66.667 12.47 0.00 0.00 3.77
4633 5569 3.810896 GCGGCCCATTCCAACGTC 61.811 66.667 0.00 0.00 0.00 4.34
4634 5570 3.496131 CGGCCCATTCCAACGTCG 61.496 66.667 0.00 0.00 0.00 5.12
4635 5571 3.810896 GGCCCATTCCAACGTCGC 61.811 66.667 0.00 0.00 0.00 5.19
4636 5572 3.810896 GCCCATTCCAACGTCGCC 61.811 66.667 0.00 0.00 0.00 5.54
4637 5573 3.131478 CCCATTCCAACGTCGCCC 61.131 66.667 0.00 0.00 0.00 6.13
4638 5574 3.131478 CCATTCCAACGTCGCCCC 61.131 66.667 0.00 0.00 0.00 5.80
4639 5575 3.496131 CATTCCAACGTCGCCCCG 61.496 66.667 0.00 0.00 0.00 5.73
4640 5576 4.011517 ATTCCAACGTCGCCCCGT 62.012 61.111 0.00 0.00 44.23 5.28
4641 5577 3.945304 ATTCCAACGTCGCCCCGTC 62.945 63.158 0.00 0.00 40.85 4.79
4988 5924 2.990479 GCCGACCATTCTCCCTGT 59.010 61.111 0.00 0.00 0.00 4.00
4989 5925 1.153349 GCCGACCATTCTCCCTGTC 60.153 63.158 0.00 0.00 0.00 3.51
4990 5926 1.617947 GCCGACCATTCTCCCTGTCT 61.618 60.000 0.00 0.00 0.00 3.41
4991 5927 0.905357 CCGACCATTCTCCCTGTCTT 59.095 55.000 0.00 0.00 0.00 3.01
4992 5928 1.134670 CCGACCATTCTCCCTGTCTTC 60.135 57.143 0.00 0.00 0.00 2.87
4993 5929 1.550524 CGACCATTCTCCCTGTCTTCA 59.449 52.381 0.00 0.00 0.00 3.02
4994 5930 2.675317 CGACCATTCTCCCTGTCTTCAC 60.675 54.545 0.00 0.00 0.00 3.18
4995 5931 1.630878 ACCATTCTCCCTGTCTTCACC 59.369 52.381 0.00 0.00 0.00 4.02
4996 5932 1.065126 CCATTCTCCCTGTCTTCACCC 60.065 57.143 0.00 0.00 0.00 4.61
4997 5933 0.905357 ATTCTCCCTGTCTTCACCCG 59.095 55.000 0.00 0.00 0.00 5.28
4998 5934 1.192146 TTCTCCCTGTCTTCACCCGG 61.192 60.000 0.00 0.00 0.00 5.73
4999 5935 2.606519 TCCCTGTCTTCACCCGGG 60.607 66.667 22.25 22.25 34.79 5.73
5000 5936 2.606519 CCCTGTCTTCACCCGGGA 60.607 66.667 32.02 1.07 35.25 5.14
5001 5937 1.995626 CCCTGTCTTCACCCGGGAT 60.996 63.158 32.02 8.96 35.25 3.85
5002 5938 1.522569 CCTGTCTTCACCCGGGATC 59.477 63.158 32.02 10.69 0.00 3.36
5003 5939 0.978146 CCTGTCTTCACCCGGGATCT 60.978 60.000 32.02 0.04 0.00 2.75
5004 5940 0.176680 CTGTCTTCACCCGGGATCTG 59.823 60.000 32.02 16.41 0.00 2.90
5005 5941 1.264749 TGTCTTCACCCGGGATCTGG 61.265 60.000 32.02 13.02 0.00 3.86
5006 5942 2.190578 CTTCACCCGGGATCTGGC 59.809 66.667 32.02 0.00 0.00 4.85
5007 5943 3.406595 CTTCACCCGGGATCTGGCC 62.407 68.421 32.02 0.00 0.00 5.36
5024 5960 4.953868 CGCCGTGGACGTTGTGGA 62.954 66.667 0.00 0.00 37.74 4.02
5025 5961 3.041940 GCCGTGGACGTTGTGGAG 61.042 66.667 0.00 0.00 37.74 3.86
5026 5962 2.420043 CCGTGGACGTTGTGGAGT 59.580 61.111 0.00 0.00 37.74 3.85
5027 5963 1.663702 CCGTGGACGTTGTGGAGTC 60.664 63.158 0.00 0.00 37.74 3.36
5028 5964 2.014554 CGTGGACGTTGTGGAGTCG 61.015 63.158 0.00 0.00 38.20 4.18
5029 5965 2.028484 TGGACGTTGTGGAGTCGC 59.972 61.111 0.00 0.00 38.20 5.19
5030 5966 2.737376 GGACGTTGTGGAGTCGCC 60.737 66.667 0.00 0.00 38.20 5.54
5031 5967 3.103911 GACGTTGTGGAGTCGCCG 61.104 66.667 0.00 0.00 40.66 6.46
5049 5985 3.900892 CCGTACGCGATCTGGCCT 61.901 66.667 15.93 0.00 41.33 5.19
5050 5986 2.353607 CGTACGCGATCTGGCCTC 60.354 66.667 15.93 0.00 41.33 4.70
5051 5987 2.027751 GTACGCGATCTGGCCTCC 59.972 66.667 15.93 0.00 0.00 4.30
5052 5988 3.592814 TACGCGATCTGGCCTCCG 61.593 66.667 15.93 3.15 0.00 4.63
5056 5992 4.147449 CGATCTGGCCTCCGTGCA 62.147 66.667 3.32 0.00 0.00 4.57
5057 5993 2.202987 GATCTGGCCTCCGTGCAG 60.203 66.667 3.32 0.00 0.00 4.41
5058 5994 3.746949 GATCTGGCCTCCGTGCAGG 62.747 68.421 3.32 0.00 42.97 4.85
5060 5996 4.767255 CTGGCCTCCGTGCAGGTC 62.767 72.222 3.32 0.00 41.99 3.85
5064 6000 4.778415 CCTCCGTGCAGGTCGTCG 62.778 72.222 5.57 0.00 41.99 5.12
5123 6059 2.895680 GCGTGATCAGCCTCTCCA 59.104 61.111 0.00 0.00 0.00 3.86
5124 6060 1.227205 GCGTGATCAGCCTCTCCAG 60.227 63.158 0.00 0.00 0.00 3.86
5125 6061 1.440893 CGTGATCAGCCTCTCCAGG 59.559 63.158 0.00 0.00 43.82 4.45
5126 6062 1.039785 CGTGATCAGCCTCTCCAGGA 61.040 60.000 0.00 0.00 43.65 3.86
5127 6063 1.198713 GTGATCAGCCTCTCCAGGAA 58.801 55.000 0.00 0.00 43.65 3.36
5128 6064 1.134551 GTGATCAGCCTCTCCAGGAAC 60.135 57.143 0.00 0.00 43.65 3.62
5129 6065 0.103937 GATCAGCCTCTCCAGGAACG 59.896 60.000 0.00 0.00 43.65 3.95
5130 6066 0.616111 ATCAGCCTCTCCAGGAACGT 60.616 55.000 0.00 0.00 43.65 3.99
5131 6067 1.216710 CAGCCTCTCCAGGAACGTC 59.783 63.158 0.00 0.00 43.65 4.34
5132 6068 1.985116 AGCCTCTCCAGGAACGTCC 60.985 63.158 0.00 0.00 43.65 4.79
5134 6070 1.950973 GCCTCTCCAGGAACGTCCTC 61.951 65.000 3.87 0.00 45.66 3.71
5135 6071 1.658686 CCTCTCCAGGAACGTCCTCG 61.659 65.000 3.87 0.00 45.66 4.63
5136 6072 2.182030 CTCCAGGAACGTCCTCGC 59.818 66.667 3.87 0.00 45.66 5.03
5137 6073 3.358076 CTCCAGGAACGTCCTCGCC 62.358 68.421 3.87 0.00 45.66 5.54
5138 6074 4.796231 CCAGGAACGTCCTCGCCG 62.796 72.222 3.87 0.00 45.66 6.46
5139 6075 4.052229 CAGGAACGTCCTCGCCGT 62.052 66.667 3.87 0.00 45.66 5.68
5140 6076 2.360350 AGGAACGTCCTCGCCGTA 60.360 61.111 0.00 0.00 45.66 4.02
5141 6077 2.202531 GGAACGTCCTCGCCGTAC 60.203 66.667 0.00 0.00 41.18 3.67
5142 6078 2.575262 GAACGTCCTCGCCGTACG 60.575 66.667 8.69 8.69 45.62 3.67
5144 6080 3.793144 ACGTCCTCGCCGTACGTC 61.793 66.667 15.21 0.00 46.04 4.34
5145 6081 4.527157 CGTCCTCGCCGTACGTCC 62.527 72.222 15.21 3.78 44.19 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.361281 TGTCTAAGGAGTAGAGGCGAA 57.639 47.619 0.00 0.00 39.61 4.70
69 72 1.673920 GGCTCGTTGGTTGTTTCTTCA 59.326 47.619 0.00 0.00 0.00 3.02
93 99 2.235016 AGTTGAAGAGACGAGCTGACT 58.765 47.619 0.00 0.00 0.00 3.41
153 161 1.598676 GGCCGTTTTTCGTGGTCTTTC 60.599 52.381 0.00 0.00 37.94 2.62
178 186 4.439700 CCATCACACCATGCATCTTTCTTC 60.440 45.833 0.00 0.00 0.00 2.87
300 312 6.625362 TGAGTGTGATGTCTCATCTAAGTTC 58.375 40.000 10.40 4.18 36.04 3.01
562 759 3.366396 TGCAGTTTGTACCCCTCAAAAA 58.634 40.909 0.00 0.00 36.71 1.94
563 760 3.019799 TGCAGTTTGTACCCCTCAAAA 57.980 42.857 0.00 0.00 36.71 2.44
564 761 2.691011 GTTGCAGTTTGTACCCCTCAAA 59.309 45.455 0.00 0.00 33.28 2.69
565 762 2.303175 GTTGCAGTTTGTACCCCTCAA 58.697 47.619 0.00 0.00 0.00 3.02
566 763 1.213182 TGTTGCAGTTTGTACCCCTCA 59.787 47.619 0.00 0.00 0.00 3.86
567 764 1.975660 TGTTGCAGTTTGTACCCCTC 58.024 50.000 0.00 0.00 0.00 4.30
568 765 2.028876 GTTGTTGCAGTTTGTACCCCT 58.971 47.619 0.00 0.00 0.00 4.79
569 766 2.028876 AGTTGTTGCAGTTTGTACCCC 58.971 47.619 0.00 0.00 0.00 4.95
570 767 3.078594 CAGTTGTTGCAGTTTGTACCC 57.921 47.619 0.00 0.00 0.00 3.69
582 779 2.877786 TCCATACACACTGCAGTTGTTG 59.122 45.455 27.74 22.01 0.00 3.33
583 780 3.141398 CTCCATACACACTGCAGTTGTT 58.859 45.455 27.74 15.07 0.00 2.83
584 781 2.368548 TCTCCATACACACTGCAGTTGT 59.631 45.455 26.57 26.57 0.00 3.32
585 782 2.738846 GTCTCCATACACACTGCAGTTG 59.261 50.000 18.94 19.93 0.00 3.16
586 783 2.368548 TGTCTCCATACACACTGCAGTT 59.631 45.455 18.94 5.57 0.00 3.16
587 784 1.970640 TGTCTCCATACACACTGCAGT 59.029 47.619 15.25 15.25 0.00 4.40
588 785 2.749280 TGTCTCCATACACACTGCAG 57.251 50.000 13.48 13.48 0.00 4.41
589 786 3.701205 ATTGTCTCCATACACACTGCA 57.299 42.857 0.00 0.00 0.00 4.41
590 787 4.503910 TGTATTGTCTCCATACACACTGC 58.496 43.478 0.00 0.00 0.00 4.40
591 788 6.340522 TGATGTATTGTCTCCATACACACTG 58.659 40.000 0.00 0.00 34.14 3.66
592 789 6.544928 TGATGTATTGTCTCCATACACACT 57.455 37.500 0.00 0.00 34.14 3.55
593 790 7.792374 ATTGATGTATTGTCTCCATACACAC 57.208 36.000 0.00 0.00 34.14 3.82
594 791 8.150296 CCTATTGATGTATTGTCTCCATACACA 58.850 37.037 0.00 0.00 34.14 3.72
613 812 1.445942 GCGTGGGCTAGCCTATTGA 59.554 57.895 32.18 9.53 35.83 2.57
820 1086 4.900635 ACCGGATTTGCTATTTCACATC 57.099 40.909 9.46 0.00 0.00 3.06
823 1089 6.848451 TCTTTTACCGGATTTGCTATTTCAC 58.152 36.000 9.46 0.00 0.00 3.18
824 1090 7.455641 TTCTTTTACCGGATTTGCTATTTCA 57.544 32.000 9.46 0.00 0.00 2.69
829 1095 9.179909 TGAAATATTCTTTTACCGGATTTGCTA 57.820 29.630 9.46 0.00 0.00 3.49
883 1149 2.197875 ACCGGGAGTATAGGCGCT 59.802 61.111 7.64 0.00 0.00 5.92
916 1183 1.583495 TATATAGCTCGCGCGTGGCT 61.583 55.000 37.17 37.17 42.32 4.75
942 1209 7.204496 AGACTATTGACTATGACCGTATCAC 57.796 40.000 0.00 0.00 41.24 3.06
943 1210 7.284716 ACAAGACTATTGACTATGACCGTATCA 59.715 37.037 0.00 0.00 43.13 2.15
944 1211 7.591795 CACAAGACTATTGACTATGACCGTATC 59.408 40.741 0.00 0.00 0.00 2.24
945 1212 7.068348 ACACAAGACTATTGACTATGACCGTAT 59.932 37.037 0.00 0.00 0.00 3.06
946 1213 6.376299 ACACAAGACTATTGACTATGACCGTA 59.624 38.462 0.00 0.00 0.00 4.02
947 1214 5.185249 ACACAAGACTATTGACTATGACCGT 59.815 40.000 0.00 0.00 0.00 4.83
948 1215 5.516696 CACACAAGACTATTGACTATGACCG 59.483 44.000 0.00 0.00 0.00 4.79
949 1216 5.292101 GCACACAAGACTATTGACTATGACC 59.708 44.000 0.00 0.00 0.00 4.02
985 1281 2.444624 CCATGCGAACGTGACCGAG 61.445 63.158 9.04 0.00 37.88 4.63
1015 1311 1.734465 GAACAAGGCAACGAGATGAGG 59.266 52.381 0.00 0.00 46.39 3.86
1050 1349 1.109920 ATGACGAGGGGATCACGAGG 61.110 60.000 0.00 0.00 0.00 4.63
1065 1364 2.158959 CCGAGTTGTCGCCGATGAC 61.159 63.158 0.00 0.00 45.41 3.06
1314 1619 4.770362 TCCATGTCGGCCCGGAGA 62.770 66.667 0.73 0.00 33.14 3.71
1400 1720 9.679661 TCATATAAGGAACAAATAAAGCAGTCA 57.320 29.630 0.00 0.00 0.00 3.41
1449 1779 8.117813 TGTACTTGTCTTTTCCAAGAAAAAGT 57.882 30.769 14.22 14.22 43.79 2.66
1520 1863 8.310122 AGCATTCACACTTATATTCCCAAAAT 57.690 30.769 0.00 0.00 0.00 1.82
1524 1867 7.040478 GCATTAGCATTCACACTTATATTCCCA 60.040 37.037 0.00 0.00 41.58 4.37
1525 1868 7.308435 GCATTAGCATTCACACTTATATTCCC 58.692 38.462 0.00 0.00 41.58 3.97
1566 1909 6.961554 CAGAATTGCGTGTTAGTTAATTCTCC 59.038 38.462 0.00 0.00 42.80 3.71
1696 2040 3.636153 ACTAAGATTCCTGAGCAACCC 57.364 47.619 0.00 0.00 0.00 4.11
1748 2103 4.487714 TTAAACCCACATTGGTGCAAAA 57.512 36.364 0.00 0.00 43.88 2.44
1751 2106 5.019470 TGATATTAAACCCACATTGGTGCA 58.981 37.500 0.00 0.00 43.88 4.57
1872 2254 6.075676 GCACAACAAACAAACAAACAAACAAG 60.076 34.615 0.00 0.00 0.00 3.16
1933 2319 3.627577 ACTTTGTGTCACTAAAGCCACAG 59.372 43.478 19.31 4.12 38.86 3.66
1976 2362 7.418337 AACCTAATAATTTCCATTTCGCCTT 57.582 32.000 0.00 0.00 0.00 4.35
2030 2429 4.435121 GCTACGACCGTACAATCCAAAAAG 60.435 45.833 0.00 0.00 0.00 2.27
2295 2697 2.093306 TGTGTCCCTAAAGCGACATG 57.907 50.000 1.11 0.00 40.88 3.21
2436 2960 3.058983 CGATTGTCTTGCAGCTTACAACA 60.059 43.478 9.14 0.00 34.89 3.33
2490 3014 6.294176 GGTTCTTGTTGATTGCACATAGAACT 60.294 38.462 17.33 0.00 34.28 3.01
2569 3123 9.490379 CTACTCCACTAGTGTAAAAACATTCTT 57.510 33.333 21.18 0.00 39.39 2.52
2570 3124 8.648693 ACTACTCCACTAGTGTAAAAACATTCT 58.351 33.333 21.18 0.00 39.39 2.40
2571 3125 8.828688 ACTACTCCACTAGTGTAAAAACATTC 57.171 34.615 21.18 0.00 39.39 2.67
2579 3133 9.964354 TCACTATTTACTACTCCACTAGTGTAA 57.036 33.333 21.18 9.32 39.39 2.41
2581 3135 8.904834 CATCACTATTTACTACTCCACTAGTGT 58.095 37.037 21.18 5.94 39.39 3.55
2582 3136 8.353684 CCATCACTATTTACTACTCCACTAGTG 58.646 40.741 16.34 16.34 39.39 2.74
2583 3137 7.014422 GCCATCACTATTTACTACTCCACTAGT 59.986 40.741 0.00 0.00 42.62 2.57
2584 3138 7.014326 TGCCATCACTATTTACTACTCCACTAG 59.986 40.741 0.00 0.00 0.00 2.57
2585 3139 6.837048 TGCCATCACTATTTACTACTCCACTA 59.163 38.462 0.00 0.00 0.00 2.74
2586 3140 5.661312 TGCCATCACTATTTACTACTCCACT 59.339 40.000 0.00 0.00 0.00 4.00
2587 3141 5.914033 TGCCATCACTATTTACTACTCCAC 58.086 41.667 0.00 0.00 0.00 4.02
2588 3142 6.747414 ATGCCATCACTATTTACTACTCCA 57.253 37.500 0.00 0.00 0.00 3.86
2589 3143 7.715249 TCAAATGCCATCACTATTTACTACTCC 59.285 37.037 0.00 0.00 0.00 3.85
2590 3144 8.662781 TCAAATGCCATCACTATTTACTACTC 57.337 34.615 0.00 0.00 0.00 2.59
2591 3145 9.632638 AATCAAATGCCATCACTATTTACTACT 57.367 29.630 0.00 0.00 0.00 2.57
2592 3146 9.669353 CAATCAAATGCCATCACTATTTACTAC 57.331 33.333 0.00 0.00 0.00 2.73
2651 3245 5.416271 TCTTGTACTCCCAATCTACCAAC 57.584 43.478 0.00 0.00 0.00 3.77
2682 3276 1.136305 ACAAGCATGCATCTTGCCATC 59.864 47.619 25.72 0.00 44.23 3.51
2957 3735 7.258441 TGTATGCTGAACTGACTGAGTTATAC 58.742 38.462 0.00 0.00 45.48 1.47
3210 3989 1.675310 TGGGAAGACATGCAAGCCG 60.675 57.895 0.00 0.00 0.00 5.52
3256 4035 2.529389 AAGGAACGGACCTGGCCT 60.529 61.111 3.32 0.00 40.49 5.19
3300 4079 4.323477 CCGCCTTTCCCGGTGACA 62.323 66.667 0.00 0.00 40.84 3.58
3501 4427 6.037786 TCGACCAAGTTATCACTCATTTCT 57.962 37.500 0.00 0.00 30.45 2.52
3505 4431 5.598416 TCATCGACCAAGTTATCACTCAT 57.402 39.130 0.00 0.00 30.45 2.90
3556 4482 1.688735 TCACCTCCTCTCAGTTGTGTG 59.311 52.381 0.00 0.00 0.00 3.82
3643 4569 7.861629 TCACCCTTTTCATTAGATATGACAGT 58.138 34.615 0.00 0.00 0.00 3.55
3682 4608 5.771666 AGAGAATGCATGGGGTGTTATAATG 59.228 40.000 0.00 0.00 0.00 1.90
3709 4635 5.075493 AGCATTGACTGGAAACTTGAGATT 58.925 37.500 0.00 0.00 0.00 2.40
3758 4685 1.191489 TCCCGCATCAGGTTGTCAGA 61.191 55.000 0.00 0.00 0.00 3.27
3774 4701 1.262640 TGGGCTTCTACGACCTTCCC 61.263 60.000 0.00 0.00 31.45 3.97
3775 4702 0.175989 CTGGGCTTCTACGACCTTCC 59.824 60.000 0.00 0.00 31.45 3.46
3776 4703 0.175989 CCTGGGCTTCTACGACCTTC 59.824 60.000 0.00 0.00 31.45 3.46
3777 4704 1.900545 GCCTGGGCTTCTACGACCTT 61.901 60.000 4.12 0.00 38.26 3.50
3778 4705 2.359967 GCCTGGGCTTCTACGACCT 61.360 63.158 4.12 0.00 38.26 3.85
3779 4706 2.180159 TTGCCTGGGCTTCTACGACC 62.180 60.000 13.05 0.00 42.51 4.79
3781 4708 1.295423 GTTGCCTGGGCTTCTACGA 59.705 57.895 13.05 0.00 42.51 3.43
3824 4756 6.183360 GCTTTAGTTTCTCCTCCATGAAATCC 60.183 42.308 0.00 0.00 35.13 3.01
3827 4759 5.630121 TGCTTTAGTTTCTCCTCCATGAAA 58.370 37.500 0.00 0.00 0.00 2.69
3842 4774 2.620627 GGTGGCTGGGTAATGCTTTAGT 60.621 50.000 0.00 0.00 0.00 2.24
4010 4942 1.220749 GGTCTCATTGCCTACGCCA 59.779 57.895 0.00 0.00 0.00 5.69
4136 5068 1.610038 TCGTGTAGTTTTCAGGAGCGA 59.390 47.619 0.00 0.00 0.00 4.93
4214 5150 7.652727 TGGAGACGATTCTGAATATCTAACAG 58.347 38.462 13.70 0.00 29.47 3.16
4225 5161 3.616956 AGCAAATGGAGACGATTCTGA 57.383 42.857 0.00 0.00 29.47 3.27
4237 5173 2.199291 GCTTCCGATCAAGCAAATGG 57.801 50.000 11.78 0.00 46.93 3.16
4339 5275 6.899114 AGAAAATCTTAAACGGCTACACTTG 58.101 36.000 0.00 0.00 0.00 3.16
4340 5276 7.658575 TGTAGAAAATCTTAAACGGCTACACTT 59.341 33.333 0.00 0.00 33.98 3.16
4422 5358 0.796927 GTTGTACCGAAGCAAGGCTC 59.203 55.000 0.00 0.00 38.25 4.70
4423 5359 0.605589 GGTTGTACCGAAGCAAGGCT 60.606 55.000 0.00 0.00 42.56 4.58
4424 5360 1.583495 GGGTTGTACCGAAGCAAGGC 61.583 60.000 0.00 0.00 39.83 4.35
4425 5361 0.958876 GGGGTTGTACCGAAGCAAGG 60.959 60.000 0.00 0.00 39.83 3.61
4426 5362 0.958876 GGGGGTTGTACCGAAGCAAG 60.959 60.000 0.00 0.00 39.83 4.01
4427 5363 1.073548 GGGGGTTGTACCGAAGCAA 59.926 57.895 0.00 0.00 39.83 3.91
4428 5364 2.751688 GGGGGTTGTACCGAAGCA 59.248 61.111 0.00 0.00 39.83 3.91
4434 5370 1.020861 CGTTAAGCGGGGGTTGTACC 61.021 60.000 0.00 0.00 35.55 3.34
4435 5371 0.320683 ACGTTAAGCGGGGGTTGTAC 60.321 55.000 0.00 0.00 46.52 2.90
4436 5372 1.261480 TACGTTAAGCGGGGGTTGTA 58.739 50.000 0.00 0.00 46.52 2.41
4437 5373 0.614812 ATACGTTAAGCGGGGGTTGT 59.385 50.000 0.00 0.00 46.52 3.32
4438 5374 2.600470 TATACGTTAAGCGGGGGTTG 57.400 50.000 0.00 0.00 46.52 3.77
4439 5375 2.742856 GCTTATACGTTAAGCGGGGGTT 60.743 50.000 19.43 0.00 46.52 4.11
4440 5376 1.202568 GCTTATACGTTAAGCGGGGGT 60.203 52.381 19.43 0.00 46.52 4.95
4441 5377 1.505425 GCTTATACGTTAAGCGGGGG 58.495 55.000 19.43 0.18 46.52 5.40
4446 5382 4.436523 CCAAAATGCGCTTATACGTTAAGC 59.563 41.667 22.06 22.06 44.61 3.09
4447 5383 4.967575 CCCAAAATGCGCTTATACGTTAAG 59.032 41.667 9.73 3.24 34.88 1.85
4448 5384 4.731193 GCCCAAAATGCGCTTATACGTTAA 60.731 41.667 9.73 0.00 34.88 2.01
4449 5385 3.242804 GCCCAAAATGCGCTTATACGTTA 60.243 43.478 9.73 0.00 34.88 3.18
4450 5386 2.478879 GCCCAAAATGCGCTTATACGTT 60.479 45.455 9.73 0.00 34.88 3.99
4451 5387 1.064952 GCCCAAAATGCGCTTATACGT 59.935 47.619 9.73 0.00 34.88 3.57
4452 5388 1.064803 TGCCCAAAATGCGCTTATACG 59.935 47.619 9.73 0.00 0.00 3.06
4453 5389 2.861462 TGCCCAAAATGCGCTTATAC 57.139 45.000 9.73 0.00 0.00 1.47
4454 5390 4.764308 TCATATGCCCAAAATGCGCTTATA 59.236 37.500 9.73 0.00 0.00 0.98
4455 5391 3.573538 TCATATGCCCAAAATGCGCTTAT 59.426 39.130 9.73 0.00 0.00 1.73
4456 5392 2.954989 TCATATGCCCAAAATGCGCTTA 59.045 40.909 9.73 0.00 0.00 3.09
4457 5393 1.755959 TCATATGCCCAAAATGCGCTT 59.244 42.857 9.73 0.00 0.00 4.68
4458 5394 1.401761 TCATATGCCCAAAATGCGCT 58.598 45.000 9.73 0.00 0.00 5.92
4459 5395 2.063266 CATCATATGCCCAAAATGCGC 58.937 47.619 0.00 0.00 0.00 6.09
4470 5406 4.032900 CGGGATACGTTAAGCATCATATGC 59.967 45.833 3.68 3.68 46.74 3.14
4471 5407 5.702622 CGGGATACGTTAAGCATCATATG 57.297 43.478 0.00 0.00 37.93 1.78
4498 5434 1.440938 TTTATGGGCACGCCGCATAC 61.441 55.000 14.88 0.00 45.58 2.39
4499 5435 1.153147 TTTATGGGCACGCCGCATA 60.153 52.632 12.48 12.48 44.36 3.14
4501 5437 3.130819 CTTTATGGGCACGCCGCA 61.131 61.111 1.14 1.84 45.17 5.69
4502 5438 3.887868 CCTTTATGGGCACGCCGC 61.888 66.667 1.14 0.00 41.28 6.53
4503 5439 0.534203 ATACCTTTATGGGCACGCCG 60.534 55.000 1.14 0.00 41.11 6.46
4504 5440 2.423577 CTATACCTTTATGGGCACGCC 58.576 52.381 0.00 0.00 41.11 5.68
4505 5441 1.804748 GCTATACCTTTATGGGCACGC 59.195 52.381 0.00 0.00 41.11 5.34
4506 5442 2.423577 GGCTATACCTTTATGGGCACG 58.576 52.381 0.00 0.00 40.37 5.34
4507 5443 2.038033 TCGGCTATACCTTTATGGGCAC 59.962 50.000 3.17 0.00 40.60 5.01
4508 5444 2.301870 CTCGGCTATACCTTTATGGGCA 59.698 50.000 3.17 0.00 40.60 5.36
4509 5445 2.935676 GCTCGGCTATACCTTTATGGGC 60.936 54.545 0.00 0.00 41.11 5.36
4510 5446 2.674177 CGCTCGGCTATACCTTTATGGG 60.674 54.545 0.00 0.00 41.11 4.00
4511 5447 2.607187 CGCTCGGCTATACCTTTATGG 58.393 52.381 0.00 0.00 42.93 2.74
4512 5448 1.993370 GCGCTCGGCTATACCTTTATG 59.007 52.381 0.00 0.00 39.11 1.90
4513 5449 1.616865 TGCGCTCGGCTATACCTTTAT 59.383 47.619 9.73 0.00 44.05 1.40
4514 5450 1.034356 TGCGCTCGGCTATACCTTTA 58.966 50.000 9.73 0.00 44.05 1.85
4515 5451 0.529992 GTGCGCTCGGCTATACCTTT 60.530 55.000 9.73 0.00 44.05 3.11
4516 5452 1.067582 GTGCGCTCGGCTATACCTT 59.932 57.895 9.73 0.00 44.05 3.50
4517 5453 2.728817 GTGCGCTCGGCTATACCT 59.271 61.111 9.73 0.00 44.05 3.08
4518 5454 2.729862 CGTGCGCTCGGCTATACC 60.730 66.667 23.15 0.00 44.05 2.73
4519 5455 2.729862 CCGTGCGCTCGGCTATAC 60.730 66.667 34.37 9.08 43.96 1.47
4544 5480 4.858433 TGCGAACCGGCCGTATCG 62.858 66.667 32.88 32.88 38.28 2.92
4545 5481 2.279918 ATGCGAACCGGCCGTATC 60.280 61.111 26.12 19.96 0.00 2.24
4546 5482 1.457823 TAGATGCGAACCGGCCGTAT 61.458 55.000 26.12 17.50 35.19 3.06
4547 5483 2.120282 TAGATGCGAACCGGCCGTA 61.120 57.895 26.12 13.30 0.00 4.02
4548 5484 3.454573 TAGATGCGAACCGGCCGT 61.455 61.111 26.12 6.07 0.00 5.68
4549 5485 2.960129 GTAGATGCGAACCGGCCG 60.960 66.667 21.04 21.04 0.00 6.13
4550 5486 2.588034 GGTAGATGCGAACCGGCC 60.588 66.667 0.00 0.00 0.00 6.13
4551 5487 2.588034 GGGTAGATGCGAACCGGC 60.588 66.667 0.00 0.00 36.57 6.13
4552 5488 2.108362 GGGGTAGATGCGAACCGG 59.892 66.667 0.00 0.00 36.57 5.28
4553 5489 2.108362 GGGGGTAGATGCGAACCG 59.892 66.667 0.00 0.00 36.57 4.44
4554 5490 1.446366 GAGGGGGTAGATGCGAACC 59.554 63.158 0.00 0.00 34.85 3.62
4555 5491 1.446366 GGAGGGGGTAGATGCGAAC 59.554 63.158 0.00 0.00 0.00 3.95
4556 5492 1.764854 GGGAGGGGGTAGATGCGAA 60.765 63.158 0.00 0.00 0.00 4.70
4557 5493 2.122989 GGGAGGGGGTAGATGCGA 60.123 66.667 0.00 0.00 0.00 5.10
4558 5494 3.616721 CGGGAGGGGGTAGATGCG 61.617 72.222 0.00 0.00 0.00 4.73
4559 5495 3.942439 GCGGGAGGGGGTAGATGC 61.942 72.222 0.00 0.00 0.00 3.91
4560 5496 3.242291 GGCGGGAGGGGGTAGATG 61.242 72.222 0.00 0.00 0.00 2.90
4561 5497 4.936081 CGGCGGGAGGGGGTAGAT 62.936 72.222 0.00 0.00 0.00 1.98
4570 5506 3.350612 TTTTTCACGCGGCGGGAG 61.351 61.111 31.03 22.74 41.43 4.30
4586 5522 1.271217 GCTAGGTCGTGGGTCCTTTTT 60.271 52.381 0.00 0.00 35.51 1.94
4587 5523 0.323957 GCTAGGTCGTGGGTCCTTTT 59.676 55.000 0.00 0.00 35.51 2.27
4588 5524 1.885163 CGCTAGGTCGTGGGTCCTTT 61.885 60.000 0.00 0.00 35.51 3.11
4589 5525 2.348888 CGCTAGGTCGTGGGTCCTT 61.349 63.158 0.00 0.00 35.51 3.36
4590 5526 2.754658 CGCTAGGTCGTGGGTCCT 60.755 66.667 0.00 0.00 37.80 3.85
4591 5527 2.643232 AACGCTAGGTCGTGGGTCC 61.643 63.158 0.00 0.00 42.46 4.46
4592 5528 1.445582 CAACGCTAGGTCGTGGGTC 60.446 63.158 0.00 0.00 42.46 4.46
4593 5529 1.255667 ATCAACGCTAGGTCGTGGGT 61.256 55.000 0.00 0.00 42.46 4.51
4594 5530 0.527817 GATCAACGCTAGGTCGTGGG 60.528 60.000 0.00 0.00 42.46 4.61
4595 5531 0.172578 TGATCAACGCTAGGTCGTGG 59.827 55.000 0.00 0.00 42.46 4.94
4596 5532 1.269166 GTGATCAACGCTAGGTCGTG 58.731 55.000 0.00 0.00 42.46 4.35
4597 5533 0.179171 CGTGATCAACGCTAGGTCGT 60.179 55.000 0.00 0.00 46.99 4.34
4598 5534 2.566997 CGTGATCAACGCTAGGTCG 58.433 57.895 0.00 0.00 46.99 4.79
4607 5543 2.322999 GAATGGGCCGCGTGATCAAC 62.323 60.000 4.92 0.00 0.00 3.18
4608 5544 2.045438 AATGGGCCGCGTGATCAA 60.045 55.556 4.92 0.00 0.00 2.57
4609 5545 2.513666 GAATGGGCCGCGTGATCA 60.514 61.111 4.92 0.00 0.00 2.92
4610 5546 3.279875 GGAATGGGCCGCGTGATC 61.280 66.667 4.92 0.00 0.00 2.92
4611 5547 3.636929 TTGGAATGGGCCGCGTGAT 62.637 57.895 4.92 0.00 0.00 3.06
4612 5548 4.337177 TTGGAATGGGCCGCGTGA 62.337 61.111 4.92 0.00 0.00 4.35
4613 5549 4.114997 GTTGGAATGGGCCGCGTG 62.115 66.667 4.92 0.00 0.00 5.34
4616 5552 3.810896 GACGTTGGAATGGGCCGC 61.811 66.667 0.00 0.00 0.00 6.53
4617 5553 3.496131 CGACGTTGGAATGGGCCG 61.496 66.667 0.00 0.00 0.00 6.13
4618 5554 3.810896 GCGACGTTGGAATGGGCC 61.811 66.667 4.64 0.00 0.00 5.80
4619 5555 3.810896 GGCGACGTTGGAATGGGC 61.811 66.667 4.64 0.00 0.00 5.36
4620 5556 3.131478 GGGCGACGTTGGAATGGG 61.131 66.667 4.64 0.00 0.00 4.00
4621 5557 3.131478 GGGGCGACGTTGGAATGG 61.131 66.667 4.64 0.00 0.00 3.16
4622 5558 3.496131 CGGGGCGACGTTGGAATG 61.496 66.667 4.64 0.00 0.00 2.67
4623 5559 4.011517 ACGGGGCGACGTTGGAAT 62.012 61.111 4.64 0.00 46.25 3.01
4971 5907 1.153349 GACAGGGAGAATGGTCGGC 60.153 63.158 0.00 0.00 0.00 5.54
4972 5908 0.905357 AAGACAGGGAGAATGGTCGG 59.095 55.000 0.00 0.00 35.49 4.79
4973 5909 1.550524 TGAAGACAGGGAGAATGGTCG 59.449 52.381 0.00 0.00 35.49 4.79
4974 5910 2.355209 GGTGAAGACAGGGAGAATGGTC 60.355 54.545 0.00 0.00 0.00 4.02
4975 5911 1.630878 GGTGAAGACAGGGAGAATGGT 59.369 52.381 0.00 0.00 0.00 3.55
4976 5912 1.065126 GGGTGAAGACAGGGAGAATGG 60.065 57.143 0.00 0.00 0.00 3.16
4977 5913 1.406069 CGGGTGAAGACAGGGAGAATG 60.406 57.143 0.00 0.00 0.00 2.67
4978 5914 0.905357 CGGGTGAAGACAGGGAGAAT 59.095 55.000 0.00 0.00 0.00 2.40
4979 5915 1.192146 CCGGGTGAAGACAGGGAGAA 61.192 60.000 0.00 0.00 0.00 2.87
4980 5916 1.609501 CCGGGTGAAGACAGGGAGA 60.610 63.158 0.00 0.00 0.00 3.71
4981 5917 2.660064 CCCGGGTGAAGACAGGGAG 61.660 68.421 14.18 0.00 41.66 4.30
4982 5918 2.606519 CCCGGGTGAAGACAGGGA 60.607 66.667 14.18 0.00 41.66 4.20
4983 5919 1.972660 GATCCCGGGTGAAGACAGGG 61.973 65.000 22.86 0.00 40.91 4.45
4984 5920 0.978146 AGATCCCGGGTGAAGACAGG 60.978 60.000 22.86 0.00 0.00 4.00
4985 5921 0.176680 CAGATCCCGGGTGAAGACAG 59.823 60.000 22.86 0.00 0.00 3.51
4986 5922 1.264749 CCAGATCCCGGGTGAAGACA 61.265 60.000 22.86 0.00 0.00 3.41
4987 5923 1.522569 CCAGATCCCGGGTGAAGAC 59.477 63.158 22.86 6.79 0.00 3.01
4988 5924 2.367202 GCCAGATCCCGGGTGAAGA 61.367 63.158 22.86 0.00 0.00 2.87
4989 5925 2.190578 GCCAGATCCCGGGTGAAG 59.809 66.667 22.86 9.57 0.00 3.02
4990 5926 3.407967 GGCCAGATCCCGGGTGAA 61.408 66.667 22.86 0.06 0.00 3.18
5007 5943 4.953868 TCCACAACGTCCACGGCG 62.954 66.667 4.80 4.80 44.95 6.46
5008 5944 3.041940 CTCCACAACGTCCACGGC 61.042 66.667 3.81 0.00 44.95 5.68
5009 5945 1.663702 GACTCCACAACGTCCACGG 60.664 63.158 3.81 0.00 44.95 4.94
5010 5946 2.014554 CGACTCCACAACGTCCACG 61.015 63.158 0.00 0.00 46.33 4.94
5011 5947 2.308039 GCGACTCCACAACGTCCAC 61.308 63.158 0.00 0.00 0.00 4.02
5012 5948 2.028484 GCGACTCCACAACGTCCA 59.972 61.111 0.00 0.00 0.00 4.02
5013 5949 2.737376 GGCGACTCCACAACGTCC 60.737 66.667 0.00 0.00 34.01 4.79
5014 5950 3.103911 CGGCGACTCCACAACGTC 61.104 66.667 0.00 0.00 34.01 4.34
5032 5968 3.825833 GAGGCCAGATCGCGTACGG 62.826 68.421 18.39 7.41 40.63 4.02
5033 5969 2.353607 GAGGCCAGATCGCGTACG 60.354 66.667 11.84 11.84 42.01 3.67
5034 5970 2.027751 GGAGGCCAGATCGCGTAC 59.972 66.667 5.01 1.04 0.00 3.67
5035 5971 3.592814 CGGAGGCCAGATCGCGTA 61.593 66.667 5.01 0.00 0.00 4.42
5039 5975 4.147449 TGCACGGAGGCCAGATCG 62.147 66.667 5.01 5.44 0.00 3.69
5040 5976 2.202987 CTGCACGGAGGCCAGATC 60.203 66.667 5.01 0.00 32.74 2.75
5041 5977 3.790437 CCTGCACGGAGGCCAGAT 61.790 66.667 5.01 0.00 32.74 2.90
5043 5979 4.767255 GACCTGCACGGAGGCCAG 62.767 72.222 5.01 0.00 36.46 4.85
5047 5983 4.778415 CGACGACCTGCACGGAGG 62.778 72.222 2.62 2.62 39.28 4.30
5100 6036 4.166011 GGCTGATCACGCCGTTGC 62.166 66.667 16.94 6.40 37.87 4.17
5106 6042 1.227205 CTGGAGAGGCTGATCACGC 60.227 63.158 0.00 8.20 0.00 5.34
5107 6043 1.039785 TCCTGGAGAGGCTGATCACG 61.040 60.000 0.00 0.00 39.57 4.35
5108 6044 1.134551 GTTCCTGGAGAGGCTGATCAC 60.135 57.143 0.00 0.00 39.57 3.06
5109 6045 1.198713 GTTCCTGGAGAGGCTGATCA 58.801 55.000 0.00 0.00 39.57 2.92
5110 6046 0.103937 CGTTCCTGGAGAGGCTGATC 59.896 60.000 0.00 0.00 39.57 2.92
5111 6047 0.616111 ACGTTCCTGGAGAGGCTGAT 60.616 55.000 0.00 0.00 39.57 2.90
5112 6048 1.228894 ACGTTCCTGGAGAGGCTGA 60.229 57.895 0.00 0.00 39.57 4.26
5113 6049 1.216710 GACGTTCCTGGAGAGGCTG 59.783 63.158 0.00 0.00 39.57 4.85
5114 6050 1.985116 GGACGTTCCTGGAGAGGCT 60.985 63.158 0.00 0.00 39.57 4.58
5115 6051 2.579738 GGACGTTCCTGGAGAGGC 59.420 66.667 0.00 0.00 39.57 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.