Multiple sequence alignment - TraesCS2B01G090600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G090600 chr2B 100.000 7434 0 0 1 7434 51894109 51886676 0.000000e+00 13729.0
1 TraesCS2B01G090600 chr2B 94.485 544 19 4 6388 6925 51959111 51959649 0.000000e+00 828.0
2 TraesCS2B01G090600 chr2B 89.639 415 29 6 624 1038 51937234 51936834 3.980000e-142 516.0
3 TraesCS2B01G090600 chr2B 86.860 449 52 4 4496 4939 338746089 338746535 5.180000e-136 496.0
4 TraesCS2B01G090600 chr2B 92.834 307 19 1 6926 7232 51986728 51987031 6.850000e-120 442.0
5 TraesCS2B01G090600 chr2B 95.210 167 8 0 5728 5894 51955709 51955875 1.590000e-66 265.0
6 TraesCS2B01G090600 chr2B 88.426 216 7 2 5803 6009 51888271 51888065 2.070000e-60 244.0
7 TraesCS2B01G090600 chr2B 95.714 140 6 0 2605 2744 173442713 173442852 7.500000e-55 226.0
8 TraesCS2B01G090600 chr2B 87.222 180 5 2 5803 5973 51888235 51888065 9.850000e-44 189.0
9 TraesCS2B01G090600 chr2B 87.222 180 5 5 5875 6045 51888307 51888137 9.850000e-44 189.0
10 TraesCS2B01G090600 chr2B 96.226 106 4 0 5803 5908 51888172 51888067 2.760000e-39 174.0
11 TraesCS2B01G090600 chr2B 96.226 106 4 0 5938 6043 51888307 51888202 2.760000e-39 174.0
12 TraesCS2B01G090600 chr2B 95.000 100 5 0 5829 5928 51888182 51888083 2.780000e-34 158.0
13 TraesCS2B01G090600 chr2B 95.000 100 5 0 5928 6027 51888281 51888182 2.780000e-34 158.0
14 TraesCS2B01G090600 chr2B 95.652 92 4 0 5938 6029 51955784 51955875 1.670000e-31 148.0
15 TraesCS2B01G090600 chr2B 96.429 84 2 1 7352 7434 51995731 51995814 3.620000e-28 137.0
16 TraesCS2B01G090600 chr2B 87.805 82 1 2 7283 7355 51995634 51995715 3.700000e-13 87.9
17 TraesCS2B01G090600 chr2D 94.229 4020 146 27 2741 6690 31809952 31805949 0.000000e+00 6059.0
18 TraesCS2B01G090600 chr2D 87.467 1133 67 31 624 1737 31811846 31810770 0.000000e+00 1236.0
19 TraesCS2B01G090600 chr2D 92.558 860 47 10 1760 2617 31810795 31809951 0.000000e+00 1218.0
20 TraesCS2B01G090600 chr2D 92.050 717 34 6 5870 6575 31823689 31824393 0.000000e+00 987.0
21 TraesCS2B01G090600 chr2D 89.498 657 46 13 4966 5604 31822422 31823073 0.000000e+00 809.0
22 TraesCS2B01G090600 chr2D 91.533 437 22 7 6565 6990 31826241 31826673 8.310000e-164 588.0
23 TraesCS2B01G090600 chr2D 91.848 368 18 4 5617 5973 31823509 31823875 3.100000e-138 503.0
24 TraesCS2B01G090600 chr2D 92.593 216 7 1 5803 6009 31806816 31806601 1.210000e-77 302.0
25 TraesCS2B01G090600 chr2D 90.000 180 9 1 5875 6045 31806852 31806673 2.700000e-54 224.0
26 TraesCS2B01G090600 chr2D 92.357 157 8 4 2616 2768 619720672 619720516 3.490000e-53 220.0
27 TraesCS2B01G090600 chr2D 89.444 180 10 1 5803 5973 31806780 31806601 1.260000e-52 219.0
28 TraesCS2B01G090600 chr2D 94.444 126 7 0 5803 5928 31806744 31806619 2.120000e-45 195.0
29 TraesCS2B01G090600 chr2D 95.763 118 5 0 5928 6045 31806826 31806709 2.740000e-44 191.0
30 TraesCS2B01G090600 chr2D 91.729 133 9 1 5796 5928 31823727 31823857 4.580000e-42 183.0
31 TraesCS2B01G090600 chr2D 96.296 108 4 0 5938 6045 31806852 31806745 2.130000e-40 178.0
32 TraesCS2B01G090600 chr2D 96.078 102 4 0 7254 7355 31827025 31827126 4.610000e-37 167.0
33 TraesCS2B01G090600 chr2D 94.000 100 6 0 5809 5908 31806702 31806603 1.290000e-32 152.0
34 TraesCS2B01G090600 chr2D 98.611 72 1 0 5974 6045 31806852 31806781 2.180000e-25 128.0
35 TraesCS2B01G090600 chr2D 83.898 118 14 5 4967 5081 249880875 249880760 2.840000e-19 108.0
36 TraesCS2B01G090600 chr2D 84.034 119 12 5 4967 5081 331762576 331762691 2.840000e-19 108.0
37 TraesCS2B01G090600 chr2D 100.000 36 0 0 6010 6045 31806852 31806817 4.810000e-07 67.6
38 TraesCS2B01G090600 chr2D 95.349 43 0 1 6005 6045 31823689 31823731 4.810000e-07 67.6
39 TraesCS2B01G090600 chr2A 93.206 4033 160 40 2741 6690 33700047 33696046 0.000000e+00 5825.0
40 TraesCS2B01G090600 chr2A 91.500 1953 89 30 702 2617 33701958 33700046 0.000000e+00 2615.0
41 TraesCS2B01G090600 chr2A 91.139 632 52 3 1 632 686199071 686199698 0.000000e+00 854.0
42 TraesCS2B01G090600 chr2A 86.860 449 52 4 4496 4939 448502301 448501855 5.180000e-136 496.0
43 TraesCS2B01G090600 chr2A 91.589 214 9 1 5803 6007 33696918 33696705 3.390000e-73 287.0
44 TraesCS2B01G090600 chr2A 91.111 180 7 1 5875 6045 33696954 33696775 1.250000e-57 235.0
45 TraesCS2B01G090600 chr2A 96.032 126 5 0 5803 5928 33696846 33696721 9.780000e-49 206.0
46 TraesCS2B01G090600 chr2A 96.610 118 4 0 5928 6045 33696928 33696811 5.880000e-46 196.0
47 TraesCS2B01G090600 chr2A 96.296 108 4 0 5938 6045 33696954 33696847 2.130000e-40 178.0
48 TraesCS2B01G090600 chr2A 84.685 111 12 5 4974 5081 310422312 310422420 1.020000e-18 106.0
49 TraesCS2B01G090600 chr5B 93.641 629 37 1 1 626 339092188 339092816 0.000000e+00 937.0
50 TraesCS2B01G090600 chr5B 87.082 449 51 4 4496 4939 560435857 560436303 1.110000e-137 501.0
51 TraesCS2B01G090600 chr1D 93.620 627 36 3 1 625 433411698 433412322 0.000000e+00 933.0
52 TraesCS2B01G090600 chr1D 82.500 120 12 7 4967 5081 409490807 409490692 6.140000e-16 97.1
53 TraesCS2B01G090600 chr1D 89.333 75 5 3 4967 5039 283562211 283562284 2.860000e-14 91.6
54 TraesCS2B01G090600 chr5A 93.042 618 41 1 1 618 638077021 638077636 0.000000e+00 902.0
55 TraesCS2B01G090600 chr5A 92.504 627 43 2 2 626 568896582 568897206 0.000000e+00 894.0
56 TraesCS2B01G090600 chr5A 91.242 628 51 2 1 628 13094391 13095014 0.000000e+00 852.0
57 TraesCS2B01G090600 chr5D 92.197 628 47 2 1 627 493682389 493683015 0.000000e+00 887.0
58 TraesCS2B01G090600 chr5D 95.070 142 5 2 2601 2742 231736767 231736906 9.710000e-54 222.0
59 TraesCS2B01G090600 chr7A 91.879 628 46 3 1 627 452753475 452752852 0.000000e+00 872.0
60 TraesCS2B01G090600 chr7A 93.333 150 10 0 2593 2742 821476 821625 9.710000e-54 222.0
61 TraesCS2B01G090600 chr7D 91.297 632 49 2 1 631 162192285 162191659 0.000000e+00 857.0
62 TraesCS2B01G090600 chr7D 98.462 130 2 0 2613 2742 150359430 150359301 5.800000e-56 230.0
63 TraesCS2B01G090600 chr7B 87.054 448 53 5 4496 4939 123769542 123769096 1.110000e-137 501.0
64 TraesCS2B01G090600 chr7B 86.860 449 52 4 4496 4939 450596511 450596957 5.180000e-136 496.0
65 TraesCS2B01G090600 chr4B 86.637 449 53 4 4496 4939 28227799 28228245 2.410000e-134 490.0
66 TraesCS2B01G090600 chr4B 96.324 136 5 0 2614 2749 633204137 633204002 2.700000e-54 224.0
67 TraesCS2B01G090600 chr4B 83.193 119 12 6 4967 5081 242711769 242711655 1.320000e-17 102.0
68 TraesCS2B01G090600 chr4B 81.148 122 18 5 4967 5085 630672157 630672038 7.940000e-15 93.5
69 TraesCS2B01G090600 chr4B 80.159 126 17 8 4964 5085 518110861 518110740 3.700000e-13 87.9
70 TraesCS2B01G090600 chr3B 86.637 449 53 4 4496 4939 385477135 385477581 2.410000e-134 490.0
71 TraesCS2B01G090600 chr3B 84.141 454 64 8 4496 4943 368107646 368107195 4.120000e-117 433.0
72 TraesCS2B01G090600 chr4A 86.414 449 54 4 4496 4939 705712842 705713288 1.120000e-132 484.0
73 TraesCS2B01G090600 chr4A 81.513 119 17 5 4967 5082 734100012 734100128 7.940000e-15 93.5
74 TraesCS2B01G090600 chr3D 84.615 455 58 12 4496 4943 319842077 319841628 6.850000e-120 442.0
75 TraesCS2B01G090600 chr1A 80.256 390 66 9 4496 4879 21764176 21764560 4.390000e-72 283.0
76 TraesCS2B01G090600 chr6A 95.745 141 5 1 2602 2742 457399494 457399355 7.500000e-55 226.0
77 TraesCS2B01G090600 chr6A 95.683 139 6 0 2605 2743 595074369 595074231 2.700000e-54 224.0
78 TraesCS2B01G090600 chr6A 81.148 122 18 5 4967 5085 4069202 4069083 7.940000e-15 93.5
79 TraesCS2B01G090600 chrUn 96.324 136 5 0 2608 2743 477687443 477687578 2.700000e-54 224.0
80 TraesCS2B01G090600 chrUn 81.513 119 17 5 4967 5082 325540155 325540271 7.940000e-15 93.5
81 TraesCS2B01G090600 chrUn 89.189 74 6 2 4967 5039 338850414 338850342 2.860000e-14 91.6
82 TraesCS2B01G090600 chrUn 89.189 74 6 2 4967 5039 427461431 427461503 2.860000e-14 91.6
83 TraesCS2B01G090600 chrUn 92.188 64 3 2 4967 5029 427676095 427676157 1.030000e-13 89.8
84 TraesCS2B01G090600 chr3A 92.500 80 4 2 4967 5044 633772586 633772665 6.100000e-21 113.0
85 TraesCS2B01G090600 chr4D 82.645 121 13 8 4967 5082 387795895 387796012 4.750000e-17 100.0
86 TraesCS2B01G090600 chr4D 84.762 105 9 6 4967 5068 379248778 379248878 1.710000e-16 99.0
87 TraesCS2B01G090600 chr4D 83.810 105 10 6 4967 5068 100801490 100801390 7.940000e-15 93.5
88 TraesCS2B01G090600 chr4D 81.102 127 15 9 4964 5085 420946974 420946852 7.940000e-15 93.5
89 TraesCS2B01G090600 chr1B 81.513 119 17 5 4967 5082 660906653 660906769 7.940000e-15 93.5
90 TraesCS2B01G090600 chr6D 80.172 116 20 3 4967 5081 181698646 181698533 4.780000e-12 84.2
91 TraesCS2B01G090600 chr6D 86.154 65 7 2 4967 5030 222723496 222723433 1.340000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G090600 chr2B 51886676 51894109 7433 True 13729.000000 13729 100.000000 1 7434 1 chr2B.!!$R1 7433
1 TraesCS2B01G090600 chr2B 51955709 51959649 3940 False 413.666667 828 95.115667 5728 6925 3 chr2B.!!$F4 1197
2 TraesCS2B01G090600 chr2D 31805949 31811846 5897 True 847.466667 6059 93.783750 624 6690 12 chr2D.!!$R3 6066
3 TraesCS2B01G090600 chr2D 31822422 31827126 4704 False 472.085714 987 92.583571 4966 7355 7 chr2D.!!$F2 2389
4 TraesCS2B01G090600 chr2A 33696046 33701958 5912 True 1363.142857 5825 93.763429 702 6690 7 chr2A.!!$R2 5988
5 TraesCS2B01G090600 chr2A 686199071 686199698 627 False 854.000000 854 91.139000 1 632 1 chr2A.!!$F2 631
6 TraesCS2B01G090600 chr5B 339092188 339092816 628 False 937.000000 937 93.641000 1 626 1 chr5B.!!$F1 625
7 TraesCS2B01G090600 chr1D 433411698 433412322 624 False 933.000000 933 93.620000 1 625 1 chr1D.!!$F2 624
8 TraesCS2B01G090600 chr5A 638077021 638077636 615 False 902.000000 902 93.042000 1 618 1 chr5A.!!$F3 617
9 TraesCS2B01G090600 chr5A 568896582 568897206 624 False 894.000000 894 92.504000 2 626 1 chr5A.!!$F2 624
10 TraesCS2B01G090600 chr5A 13094391 13095014 623 False 852.000000 852 91.242000 1 628 1 chr5A.!!$F1 627
11 TraesCS2B01G090600 chr5D 493682389 493683015 626 False 887.000000 887 92.197000 1 627 1 chr5D.!!$F2 626
12 TraesCS2B01G090600 chr7A 452752852 452753475 623 True 872.000000 872 91.879000 1 627 1 chr7A.!!$R1 626
13 TraesCS2B01G090600 chr7D 162191659 162192285 626 True 857.000000 857 91.297000 1 631 1 chr7D.!!$R2 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
644 650 0.954452 AGAAAACGCTGGCTTTGAGG 59.046 50.000 0.00 0.00 0.00 3.86 F
1631 1682 0.034670 ATGCAGAGGCCTTGAAGGAC 60.035 55.000 16.93 13.48 46.64 3.85 F
2223 2279 1.067283 ACGAGCTTCATGTGAGTGAGG 60.067 52.381 0.00 0.00 0.00 3.86 F
2632 2691 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30 F
2637 2696 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 F
2638 2697 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24 F
4484 4623 0.534203 GCTTGGGAGGTGTCGAACAA 60.534 55.000 0.00 0.00 0.00 2.83 F
6317 9111 0.849417 GAGGAGGGGAAGCATGGATT 59.151 55.000 0.00 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2615 2674 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59 R
2618 2677 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R
3774 3867 2.159517 GCATTTTTCGAGGCTGGTAGTG 60.160 50.000 0.00 0.00 0.00 2.74 R
4478 4617 0.748005 CCAGGCCCCATACTTGTTCG 60.748 60.000 0.00 0.00 0.00 3.95 R
4484 4623 1.152271 ACTATAGCCAGGCCCCATACT 59.848 52.381 8.22 0.00 0.00 2.12 R
4562 4701 3.172339 CATGACCCAAATTTCCTCCCAA 58.828 45.455 0.00 0.00 0.00 4.12 R
6348 9166 0.321919 CCTTGCACTAGCTTCAGCCA 60.322 55.000 0.00 0.00 43.38 4.75 R
7364 12704 0.536687 ACGATCGGGCCGAGAGATAA 60.537 55.000 33.82 9.51 39.91 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 83 4.061131 TGGAGACTCCTATTCTTGACCA 57.939 45.455 22.14 0.00 37.46 4.02
125 130 1.989706 CCTTCTCCGGGGTTTTTCAA 58.010 50.000 0.00 0.00 0.00 2.69
133 138 1.202313 CGGGGTTTTTCAACGCTTTCA 60.202 47.619 2.64 0.00 43.72 2.69
253 258 2.178580 CCTTTGGCTGCTTGGGAATTA 58.821 47.619 0.00 0.00 0.00 1.40
351 356 2.859273 CTTTGCGGAGGCGGAGTCAT 62.859 60.000 0.00 0.00 44.10 3.06
374 379 1.688197 CATGTGTTGCCCCTGTTTTCT 59.312 47.619 0.00 0.00 0.00 2.52
387 392 2.421424 CTGTTTTCTCTATGGTGGCAGC 59.579 50.000 10.30 10.30 0.00 5.25
405 411 2.099592 CAGCCAGTGACACAAAACATGT 59.900 45.455 8.59 0.00 45.34 3.21
407 413 4.022935 CAGCCAGTGACACAAAACATGTAT 60.023 41.667 8.59 0.00 41.46 2.29
514 520 5.585820 TGTTCTACCGAGCACAATGTATA 57.414 39.130 0.00 0.00 0.00 1.47
555 561 6.876257 TGTTTTCTTGTTGTAAATGGCAGTTT 59.124 30.769 5.17 2.95 0.00 2.66
565 571 8.301002 GTTGTAAATGGCAGTTTTGTAATCCTA 58.699 33.333 5.17 0.00 0.00 2.94
569 575 2.688446 GGCAGTTTTGTAATCCTAGCCC 59.312 50.000 0.00 0.00 33.68 5.19
601 607 3.074675 TGTTAATTCAAAGCCGGGCTA 57.925 42.857 24.16 6.85 38.25 3.93
611 617 1.147153 GCCGGGCTATTCTTGAGCT 59.853 57.895 12.87 0.00 39.98 4.09
618 624 4.189231 GGGCTATTCTTGAGCTTTCGTTA 58.811 43.478 0.00 0.00 39.98 3.18
644 650 0.954452 AGAAAACGCTGGCTTTGAGG 59.046 50.000 0.00 0.00 0.00 3.86
665 671 1.712018 TACTCATCGGGTCGAGCGTG 61.712 60.000 8.77 7.65 39.91 5.34
895 901 1.967535 CGGAACACTCTGCTCTCCA 59.032 57.895 0.00 0.00 0.00 3.86
944 950 2.687200 CCGATCCCACCCACCTCA 60.687 66.667 0.00 0.00 0.00 3.86
1221 1245 1.601171 CCCTGCTTCCTCTGTCCTG 59.399 63.158 0.00 0.00 0.00 3.86
1222 1246 1.197430 CCCTGCTTCCTCTGTCCTGT 61.197 60.000 0.00 0.00 0.00 4.00
1223 1247 0.248843 CCTGCTTCCTCTGTCCTGTC 59.751 60.000 0.00 0.00 0.00 3.51
1224 1248 0.972134 CTGCTTCCTCTGTCCTGTCA 59.028 55.000 0.00 0.00 0.00 3.58
1225 1249 1.554160 CTGCTTCCTCTGTCCTGTCAT 59.446 52.381 0.00 0.00 0.00 3.06
1234 1258 0.602638 TGTCCTGTCATGCGTGAACC 60.603 55.000 10.93 0.00 35.80 3.62
1273 1304 1.263217 GAAATTCGTGACGTTGGTGCT 59.737 47.619 4.40 0.00 0.00 4.40
1274 1305 0.586319 AATTCGTGACGTTGGTGCTG 59.414 50.000 4.40 0.00 0.00 4.41
1275 1306 1.841663 ATTCGTGACGTTGGTGCTGC 61.842 55.000 4.40 0.00 0.00 5.25
1324 1362 7.158021 AGCTAATTGGAGTAGATTGCTATGTC 58.842 38.462 0.00 0.00 0.00 3.06
1394 1439 2.849880 TTTGTTCTGTCAAGCTGTGC 57.150 45.000 0.00 0.00 0.00 4.57
1395 1440 1.748950 TTGTTCTGTCAAGCTGTGCA 58.251 45.000 0.00 0.00 0.00 4.57
1401 1446 0.524414 TGTCAAGCTGTGCATCATGC 59.476 50.000 1.35 1.35 45.29 4.06
1410 1455 1.000052 TGTGCATCATGCTTTGTGGTG 60.000 47.619 11.84 0.00 45.31 4.17
1444 1495 3.182572 GCGACTGTCTAATTTAGCATCCG 59.817 47.826 6.21 7.63 0.00 4.18
1520 1571 1.845266 CGGTCTTGGATGACGATGAG 58.155 55.000 0.00 0.00 37.81 2.90
1527 1578 1.134699 TGGATGACGATGAGGTGAAGC 60.135 52.381 0.00 0.00 0.00 3.86
1535 1586 2.621338 GATGAGGTGAAGCATCGAACA 58.379 47.619 0.00 0.00 32.52 3.18
1631 1682 0.034670 ATGCAGAGGCCTTGAAGGAC 60.035 55.000 16.93 13.48 46.64 3.85
1637 1688 2.281484 GCCTTGAAGGACGCACCA 60.281 61.111 16.93 0.00 37.67 4.17
1726 1777 3.450904 TCCCCTACTCTGTTTGTATGCT 58.549 45.455 0.00 0.00 0.00 3.79
1731 1782 5.237815 CCTACTCTGTTTGTATGCTGAACA 58.762 41.667 4.06 4.06 0.00 3.18
1784 1835 7.708322 TCATGCTTCTATGCCGAATCTATTATC 59.292 37.037 0.00 0.00 0.00 1.75
1869 1920 6.042552 TCCCCTATCAAAATGCAGTTGAAAAA 59.957 34.615 16.91 7.42 38.44 1.94
1871 1922 7.148373 CCCCTATCAAAATGCAGTTGAAAAATG 60.148 37.037 16.91 4.02 46.16 2.32
1873 1924 9.421806 CCTATCAAAATGCAGTTGAAAAATGTA 57.578 29.630 16.91 5.87 45.01 2.29
2144 2200 1.342076 ACGGAGATGGAGGCACTAGAA 60.342 52.381 0.00 0.00 41.55 2.10
2192 2248 1.496060 TATTGGAGTCGGAGGCATGT 58.504 50.000 0.00 0.00 0.00 3.21
2223 2279 1.067283 ACGAGCTTCATGTGAGTGAGG 60.067 52.381 0.00 0.00 0.00 3.86
2261 2319 9.447157 TCATGTGTTGATTACATTTGAGATGTA 57.553 29.630 0.00 0.00 39.39 2.29
2262 2320 9.494479 CATGTGTTGATTACATTTGAGATGTAC 57.506 33.333 0.00 0.00 39.39 2.90
2263 2321 7.738345 TGTGTTGATTACATTTGAGATGTACG 58.262 34.615 0.00 0.00 39.39 3.67
2264 2322 7.386573 TGTGTTGATTACATTTGAGATGTACGT 59.613 33.333 0.00 0.00 39.39 3.57
2265 2323 8.865978 GTGTTGATTACATTTGAGATGTACGTA 58.134 33.333 0.00 0.00 39.39 3.57
2271 2329 6.920569 ACATTTGAGATGTACGTAATTCCC 57.079 37.500 0.00 0.00 0.00 3.97
2347 2405 3.071206 AGAGCTGGGACGATGCGT 61.071 61.111 0.00 0.00 45.10 5.24
2420 2478 5.622007 GCATATGCTAGTTTTTGGCTTGTCA 60.622 40.000 20.64 0.00 38.21 3.58
2427 2485 6.479990 GCTAGTTTTTGGCTTGTCATTTTCTT 59.520 34.615 0.00 0.00 0.00 2.52
2429 2487 6.405538 AGTTTTTGGCTTGTCATTTTCTTGA 58.594 32.000 0.00 0.00 0.00 3.02
2625 2684 7.443259 TTTTTCTTGTTTAATACTCCCTCCG 57.557 36.000 0.00 0.00 0.00 4.63
2626 2685 5.750352 TTCTTGTTTAATACTCCCTCCGT 57.250 39.130 0.00 0.00 0.00 4.69
2627 2686 5.334724 TCTTGTTTAATACTCCCTCCGTC 57.665 43.478 0.00 0.00 0.00 4.79
2628 2687 4.161001 TCTTGTTTAATACTCCCTCCGTCC 59.839 45.833 0.00 0.00 0.00 4.79
2629 2688 2.428171 TGTTTAATACTCCCTCCGTCCG 59.572 50.000 0.00 0.00 0.00 4.79
2630 2689 1.696063 TTAATACTCCCTCCGTCCGG 58.304 55.000 0.00 0.00 0.00 5.14
2631 2690 0.846015 TAATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
2632 2691 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
2633 2692 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2634 2693 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2635 2694 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2636 2695 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2637 2696 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2638 2697 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2639 2698 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2640 2699 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2641 2700 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2642 2701 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2643 2702 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2644 2703 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2645 2704 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2646 2705 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2647 2706 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2648 2707 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2649 2708 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2650 2709 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
2651 2710 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
2652 2711 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
2653 2712 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
2654 2713 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
2660 2719 7.614494 ACTTGTCATCAAAATGGATAAAAGGG 58.386 34.615 0.00 0.00 33.42 3.95
2661 2720 6.543430 TGTCATCAAAATGGATAAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
2662 2721 6.259893 TGTCATCAAAATGGATAAAAGGGGA 58.740 36.000 0.00 0.00 33.42 4.81
2663 2722 6.902416 TGTCATCAAAATGGATAAAAGGGGAT 59.098 34.615 0.00 0.00 33.42 3.85
2664 2723 7.147689 TGTCATCAAAATGGATAAAAGGGGATG 60.148 37.037 0.00 0.00 33.42 3.51
2665 2724 6.902416 TCATCAAAATGGATAAAAGGGGATGT 59.098 34.615 0.00 0.00 33.42 3.06
2666 2725 8.064389 TCATCAAAATGGATAAAAGGGGATGTA 58.936 33.333 0.00 0.00 33.42 2.29
2667 2726 8.873144 CATCAAAATGGATAAAAGGGGATGTAT 58.127 33.333 0.00 0.00 0.00 2.29
2668 2727 8.477419 TCAAAATGGATAAAAGGGGATGTATC 57.523 34.615 0.00 0.00 0.00 2.24
2669 2728 8.288812 TCAAAATGGATAAAAGGGGATGTATCT 58.711 33.333 0.00 0.00 0.00 1.98
2670 2729 9.586732 CAAAATGGATAAAAGGGGATGTATCTA 57.413 33.333 0.00 0.00 0.00 1.98
2671 2730 9.813826 AAAATGGATAAAAGGGGATGTATCTAG 57.186 33.333 0.00 0.00 0.00 2.43
2672 2731 8.757307 AATGGATAAAAGGGGATGTATCTAGA 57.243 34.615 0.00 0.00 0.00 2.43
2673 2732 8.940012 ATGGATAAAAGGGGATGTATCTAGAT 57.060 34.615 10.73 10.73 0.00 1.98
2674 2733 8.150827 TGGATAAAAGGGGATGTATCTAGATG 57.849 38.462 15.79 0.00 0.00 2.90
2675 2734 7.739444 TGGATAAAAGGGGATGTATCTAGATGT 59.261 37.037 15.79 1.25 0.00 3.06
2676 2735 9.268282 GGATAAAAGGGGATGTATCTAGATGTA 57.732 37.037 15.79 4.44 0.00 2.29
2683 2742 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
2721 2780 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
2729 2788 7.312154 TCCATTTTGATGACAAGTATTTTCCG 58.688 34.615 0.00 0.00 37.32 4.30
2730 2789 7.175816 TCCATTTTGATGACAAGTATTTTCCGA 59.824 33.333 0.00 0.00 37.32 4.55
2731 2790 7.273381 CCATTTTGATGACAAGTATTTTCCGAC 59.727 37.037 0.00 0.00 37.32 4.79
2732 2791 6.869315 TTTGATGACAAGTATTTTCCGACA 57.131 33.333 0.00 0.00 37.32 4.35
2733 2792 6.480524 TTGATGACAAGTATTTTCCGACAG 57.519 37.500 0.00 0.00 0.00 3.51
2734 2793 5.789521 TGATGACAAGTATTTTCCGACAGA 58.210 37.500 0.00 0.00 0.00 3.41
2735 2794 5.869344 TGATGACAAGTATTTTCCGACAGAG 59.131 40.000 0.00 0.00 0.00 3.35
2736 2795 4.566004 TGACAAGTATTTTCCGACAGAGG 58.434 43.478 0.00 0.00 0.00 3.69
2737 2796 3.933332 GACAAGTATTTTCCGACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
2738 2797 3.581332 ACAAGTATTTTCCGACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
2739 2798 4.184629 CAAGTATTTTCCGACAGAGGGAG 58.815 47.826 0.00 0.00 34.45 4.30
2752 2811 5.067936 CGACAGAGGGAGTAGAATACATTGT 59.932 44.000 0.00 0.00 46.26 2.71
2809 2868 2.171840 GAGCTAGAGAGTGGGTGAACA 58.828 52.381 0.00 0.00 0.00 3.18
2889 2948 6.463995 TTAGCCATCATTTTTACCATGTCC 57.536 37.500 0.00 0.00 0.00 4.02
2991 3050 5.848833 ATGAAGGGAAGATTTCTGAATGC 57.151 39.130 0.00 0.00 0.00 3.56
3047 3106 7.879677 TGAAGATAATGTATGACTATTGCTGGG 59.120 37.037 0.00 0.00 0.00 4.45
3242 3301 3.194968 AGACCCGGTACATTACAACAGAG 59.805 47.826 0.00 0.00 0.00 3.35
3479 3538 5.163754 GGTGTGCAGATCTGGTAATTGTTAC 60.164 44.000 23.89 3.96 35.39 2.50
3485 3544 7.931407 TGCAGATCTGGTAATTGTTACGAATAT 59.069 33.333 23.89 0.00 37.00 1.28
3574 3633 2.870411 GGGGTTAAGTACGCAGCTAATG 59.130 50.000 0.00 0.00 41.24 1.90
3676 3763 9.465985 GATTATACTGAGGCTTGTTTCTACTAC 57.534 37.037 0.00 0.00 0.00 2.73
3881 3975 6.380079 AAGAAATTACCTGATGACCAGACT 57.620 37.500 0.00 0.00 45.78 3.24
3912 4006 4.799586 GCTGTAAGTTCCTGCAGTTACTGA 60.800 45.833 23.91 14.01 35.23 3.41
3964 4058 8.867097 TCCTACTGTTATTGGTTAGGTGATATC 58.133 37.037 0.00 0.00 0.00 1.63
3966 4060 9.915629 CTACTGTTATTGGTTAGGTGATATCTC 57.084 37.037 3.98 0.00 0.00 2.75
4101 4239 7.276658 TGTTTGGTCTGATCTTTGTTGTACTA 58.723 34.615 0.00 0.00 0.00 1.82
4163 4301 4.829492 GCCCCTGCTTATTTCTGACATTAT 59.171 41.667 0.00 0.00 33.53 1.28
4225 4363 6.607600 AGCAGTGAGGATTGTAGTATAACTGA 59.392 38.462 0.00 0.00 35.63 3.41
4307 4445 6.183360 ACGCAGAATACACCAAGAATATTGTG 60.183 38.462 0.00 0.00 34.39 3.33
4478 4617 1.620822 ATTTGTGCTTGGGAGGTGTC 58.379 50.000 0.00 0.00 0.00 3.67
4484 4623 0.534203 GCTTGGGAGGTGTCGAACAA 60.534 55.000 0.00 0.00 0.00 2.83
4524 4663 7.973048 ATAGTGACTCTAATTGGGTCAGTTA 57.027 36.000 18.72 12.44 41.79 2.24
4562 4701 7.391148 AGATCAACGGCTATTATGTGTTTTT 57.609 32.000 0.00 0.00 0.00 1.94
4678 4818 3.110705 AGTGAGATGCTATGGGTGAAGT 58.889 45.455 0.00 0.00 0.00 3.01
4733 4873 1.134098 ACCCTTGAGAGTGTTGTGTGG 60.134 52.381 0.00 0.00 0.00 4.17
4943 5083 2.949963 GCATATGGCAAGAGGGGTTGAA 60.950 50.000 4.56 0.00 43.97 2.69
5068 5208 1.228367 CATAGGGCCCAGTCCATGC 60.228 63.158 27.56 0.00 0.00 4.06
5283 5446 4.681025 TGAAATTGAAAAAGATCTGCACGC 59.319 37.500 0.00 0.00 0.00 5.34
5308 5471 5.456548 TGACAAAATCTGCACATCATGTT 57.543 34.783 0.00 0.00 0.00 2.71
5561 5730 8.445275 ACATTTGTTGTACAGTTACTGAATCA 57.555 30.769 20.07 11.27 36.57 2.57
5714 6308 9.736023 CTTTATTGTGCCTAATGATTTTACCTC 57.264 33.333 0.00 0.00 0.00 3.85
5734 6328 4.806571 CATGTTGCAGCTCATGGC 57.193 55.556 17.55 0.00 38.10 4.40
5791 6385 5.775195 CCCAAAAGAAAAGAGGGTCAATACT 59.225 40.000 0.00 0.00 34.75 2.12
5849 6443 3.500343 ACTACCAAGCAAGGCAAAGAAT 58.500 40.909 0.00 0.00 0.00 2.40
5861 6455 6.646240 GCAAGGCAAAGAATCAATTAGTTCAA 59.354 34.615 5.19 0.00 0.00 2.69
5908 6502 7.074653 ACCAATTAGTTCAGAGACTACCAAA 57.925 36.000 0.00 0.00 32.12 3.28
6124 8918 2.872245 CGCAAAGAGTTCAGACAAGGAA 59.128 45.455 0.00 0.00 0.00 3.36
6159 8953 2.574006 ATTGCTTCAGACAAGGAGCA 57.426 45.000 0.00 0.00 0.00 4.26
6172 8966 4.734266 ACAAGGAGCAGAAAAAGGAATCT 58.266 39.130 0.00 0.00 0.00 2.40
6312 9106 2.739996 CGCTGAGGAGGGGAAGCAT 61.740 63.158 0.00 0.00 35.33 3.79
6317 9111 0.849417 GAGGAGGGGAAGCATGGATT 59.151 55.000 0.00 0.00 0.00 3.01
6348 9166 1.134699 TGAGCGAGAAAATGGCGATCT 60.135 47.619 0.00 0.00 40.65 2.75
6366 9184 1.085091 CTGGCTGAAGCTAGTGCAAG 58.915 55.000 7.46 1.83 43.52 4.01
6371 9189 2.344950 CTGAAGCTAGTGCAAGGTCAG 58.655 52.381 0.00 0.00 42.74 3.51
6399 9770 3.564644 TCCGCGGTCAAGAAATTTTACAA 59.435 39.130 27.15 0.00 0.00 2.41
6453 9826 1.570813 TGTAAAGCAGATGCCGATCG 58.429 50.000 8.51 8.51 43.38 3.69
6454 9827 1.136110 TGTAAAGCAGATGCCGATCGA 59.864 47.619 18.66 0.00 43.38 3.59
6455 9828 2.224042 TGTAAAGCAGATGCCGATCGAT 60.224 45.455 18.66 2.16 43.38 3.59
6456 9829 1.506493 AAAGCAGATGCCGATCGATC 58.494 50.000 18.66 15.68 43.38 3.69
6473 9846 3.258123 TCGATCACCTGTGACTTGATCAA 59.742 43.478 8.12 8.12 43.96 2.57
6499 9872 7.329499 TCAGAGGTAGTAGTACTGAGTTGTAG 58.671 42.308 13.29 0.00 33.57 2.74
6500 9873 7.179872 TCAGAGGTAGTAGTACTGAGTTGTAGA 59.820 40.741 13.29 0.00 33.57 2.59
6501 9874 7.988599 CAGAGGTAGTAGTACTGAGTTGTAGAT 59.011 40.741 13.29 0.00 0.00 1.98
6502 9875 7.988599 AGAGGTAGTAGTACTGAGTTGTAGATG 59.011 40.741 13.29 0.00 0.00 2.90
6561 9938 6.151691 CCAGTTTGTGTGTTCCTGAATAATG 58.848 40.000 0.00 0.00 0.00 1.90
6646 11881 7.512130 AGGTAGAAGATCATTGTATTGATGCA 58.488 34.615 0.00 0.00 36.48 3.96
6904 12145 9.729281 ACTTGTAATAAGAATTAGGGTTTTCGA 57.271 29.630 0.00 0.00 31.76 3.71
6920 12161 2.520968 GACACCTGTTGCCCCCTT 59.479 61.111 0.00 0.00 0.00 3.95
6949 12200 6.128363 GCGTCCTTGCTTTATGTAGTTTTAGT 60.128 38.462 0.00 0.00 0.00 2.24
7030 12311 1.064003 AGGTGTGCCTCCAACATGTA 58.936 50.000 0.00 0.00 42.67 2.29
7033 12314 2.164219 GGTGTGCCTCCAACATGTATTG 59.836 50.000 0.00 0.00 0.00 1.90
7050 12331 0.037697 TTGGATCTGGTCGACGTTGG 60.038 55.000 9.92 0.00 0.00 3.77
7072 12357 0.243636 CTCGGTGGATTTGTTTGGCC 59.756 55.000 0.00 0.00 0.00 5.36
7079 12364 1.884075 GATTTGTTTGGCCCCGGTCC 61.884 60.000 0.00 1.13 0.00 4.46
7081 12366 4.589675 TGTTTGGCCCCGGTCCAC 62.590 66.667 11.77 3.46 32.45 4.02
7101 12386 4.260990 CCACGCTTGTCTCTAGTAGATCTG 60.261 50.000 5.18 0.00 36.36 2.90
7102 12387 4.334203 CACGCTTGTCTCTAGTAGATCTGT 59.666 45.833 5.18 0.00 36.36 3.41
7103 12388 5.524281 CACGCTTGTCTCTAGTAGATCTGTA 59.476 44.000 5.18 0.00 36.36 2.74
7104 12389 6.203915 CACGCTTGTCTCTAGTAGATCTGTAT 59.796 42.308 5.18 0.00 36.36 2.29
7107 12392 8.775527 CGCTTGTCTCTAGTAGATCTGTATAAA 58.224 37.037 5.18 0.00 36.36 1.40
7115 12400 9.788889 TCTAGTAGATCTGTATAAATTCGGTCA 57.211 33.333 5.18 0.00 0.00 4.02
7117 12402 8.466617 AGTAGATCTGTATAAATTCGGTCAGT 57.533 34.615 5.18 0.00 0.00 3.41
7118 12403 8.915036 AGTAGATCTGTATAAATTCGGTCAGTT 58.085 33.333 5.18 0.00 0.00 3.16
7136 12421 4.936411 TCAGTTCTCGTTTTTGTTGGTGTA 59.064 37.500 0.00 0.00 0.00 2.90
7189 12474 3.777106 TCATTGTCAGCAAGTCCTCTT 57.223 42.857 0.00 0.00 38.10 2.85
7206 12491 3.370103 CCTCTTGGGCCTTATTACGACAA 60.370 47.826 4.53 0.00 0.00 3.18
7211 12496 5.570234 TGGGCCTTATTACGACAATTTTC 57.430 39.130 4.53 0.00 0.00 2.29
7219 12504 8.169268 CCTTATTACGACAATTTTCTGACTGTC 58.831 37.037 0.00 0.00 35.82 3.51
7234 12519 6.971602 TCTGACTGTCTAAGTACAACAAGAG 58.028 40.000 9.51 0.00 40.07 2.85
7235 12520 6.016192 TCTGACTGTCTAAGTACAACAAGAGG 60.016 42.308 9.51 0.00 40.07 3.69
7237 12522 6.016192 TGACTGTCTAAGTACAACAAGAGGAG 60.016 42.308 9.51 0.00 40.07 3.69
7238 12523 6.069331 ACTGTCTAAGTACAACAAGAGGAGA 58.931 40.000 0.00 0.00 37.36 3.71
7239 12524 6.207810 ACTGTCTAAGTACAACAAGAGGAGAG 59.792 42.308 0.00 0.00 37.36 3.20
7240 12525 6.304624 TGTCTAAGTACAACAAGAGGAGAGA 58.695 40.000 0.00 0.00 0.00 3.10
7241 12526 6.431543 TGTCTAAGTACAACAAGAGGAGAGAG 59.568 42.308 0.00 0.00 0.00 3.20
7242 12527 6.655848 GTCTAAGTACAACAAGAGGAGAGAGA 59.344 42.308 0.00 0.00 0.00 3.10
7243 12528 5.975693 AAGTACAACAAGAGGAGAGAGAG 57.024 43.478 0.00 0.00 0.00 3.20
7244 12529 3.761752 AGTACAACAAGAGGAGAGAGAGC 59.238 47.826 0.00 0.00 0.00 4.09
7246 12531 4.040936 ACAACAAGAGGAGAGAGAGCTA 57.959 45.455 0.00 0.00 0.00 3.32
7248 12533 5.761205 ACAACAAGAGGAGAGAGAGCTATA 58.239 41.667 0.00 0.00 0.00 1.31
7250 12535 6.838612 ACAACAAGAGGAGAGAGAGCTATAAT 59.161 38.462 0.00 0.00 0.00 1.28
7251 12536 7.344352 ACAACAAGAGGAGAGAGAGCTATAATT 59.656 37.037 0.00 0.00 0.00 1.40
7252 12537 7.912778 ACAAGAGGAGAGAGAGCTATAATTT 57.087 36.000 0.00 0.00 0.00 1.82
7255 12595 8.587608 CAAGAGGAGAGAGAGCTATAATTTGAT 58.412 37.037 0.00 0.00 0.00 2.57
7283 12623 4.486125 AAAAATGGAGAGGAGAGAGAGC 57.514 45.455 0.00 0.00 0.00 4.09
7321 12661 1.068816 GTGTTCGGCCACATACCAAAC 60.069 52.381 2.24 0.00 35.38 2.93
7355 12695 2.576648 ACCTAGGATCAACAAGGAACCC 59.423 50.000 17.98 0.00 30.49 4.11
7356 12696 2.420129 CCTAGGATCAACAAGGAACCCG 60.420 54.545 1.05 0.00 30.49 5.28
7357 12697 1.358152 AGGATCAACAAGGAACCCGA 58.642 50.000 0.00 0.00 30.49 5.14
7358 12698 1.003233 AGGATCAACAAGGAACCCGAC 59.997 52.381 0.00 0.00 30.49 4.79
7359 12699 1.076332 GATCAACAAGGAACCCGACG 58.924 55.000 0.00 0.00 0.00 5.12
7360 12700 0.682852 ATCAACAAGGAACCCGACGA 59.317 50.000 0.00 0.00 0.00 4.20
7361 12701 0.032952 TCAACAAGGAACCCGACGAG 59.967 55.000 0.00 0.00 0.00 4.18
7362 12702 0.032952 CAACAAGGAACCCGACGAGA 59.967 55.000 0.00 0.00 0.00 4.04
7363 12703 0.974383 AACAAGGAACCCGACGAGAT 59.026 50.000 0.00 0.00 0.00 2.75
7364 12704 0.974383 ACAAGGAACCCGACGAGATT 59.026 50.000 0.00 0.00 0.00 2.40
7365 12705 1.346722 ACAAGGAACCCGACGAGATTT 59.653 47.619 0.00 0.00 0.00 2.17
7366 12706 2.564062 ACAAGGAACCCGACGAGATTTA 59.436 45.455 0.00 0.00 0.00 1.40
7367 12707 3.197116 ACAAGGAACCCGACGAGATTTAT 59.803 43.478 0.00 0.00 0.00 1.40
7368 12708 3.729862 AGGAACCCGACGAGATTTATC 57.270 47.619 0.00 0.00 0.00 1.75
7369 12709 3.297736 AGGAACCCGACGAGATTTATCT 58.702 45.455 0.00 0.00 40.50 1.98
7379 12719 1.996798 AGATTTATCTCTCGGCCCGA 58.003 50.000 5.37 5.37 29.30 5.14
7380 12720 2.530701 AGATTTATCTCTCGGCCCGAT 58.469 47.619 6.16 0.00 34.61 4.18
7381 12721 2.494073 AGATTTATCTCTCGGCCCGATC 59.506 50.000 6.16 0.00 34.61 3.69
7382 12722 0.596577 TTTATCTCTCGGCCCGATCG 59.403 55.000 6.16 8.51 34.61 3.69
7383 12723 0.536687 TTATCTCTCGGCCCGATCGT 60.537 55.000 6.16 0.00 34.61 3.73
7384 12724 1.235281 TATCTCTCGGCCCGATCGTG 61.235 60.000 6.16 3.21 34.61 4.35
7385 12725 2.960359 ATCTCTCGGCCCGATCGTGA 62.960 60.000 6.16 2.66 34.61 4.35
7386 12726 3.187699 CTCTCGGCCCGATCGTGAG 62.188 68.421 6.16 14.53 40.25 3.51
7387 12727 3.518998 CTCGGCCCGATCGTGAGT 61.519 66.667 6.16 0.00 34.61 3.41
7388 12728 3.064987 CTCGGCCCGATCGTGAGTT 62.065 63.158 6.16 0.00 34.61 3.01
7389 12729 2.125673 CGGCCCGATCGTGAGTTT 60.126 61.111 15.09 0.00 0.00 2.66
7390 12730 2.452813 CGGCCCGATCGTGAGTTTG 61.453 63.158 15.09 0.00 0.00 2.93
7391 12731 1.375523 GGCCCGATCGTGAGTTTGT 60.376 57.895 15.09 0.00 0.00 2.83
7392 12732 0.953960 GGCCCGATCGTGAGTTTGTT 60.954 55.000 15.09 0.00 0.00 2.83
7393 12733 1.673626 GGCCCGATCGTGAGTTTGTTA 60.674 52.381 15.09 0.00 0.00 2.41
7394 12734 2.277084 GCCCGATCGTGAGTTTGTTAT 58.723 47.619 15.09 0.00 0.00 1.89
7395 12735 2.284417 GCCCGATCGTGAGTTTGTTATC 59.716 50.000 15.09 0.00 0.00 1.75
7396 12736 2.534349 CCCGATCGTGAGTTTGTTATCG 59.466 50.000 15.09 0.00 36.78 2.92
7397 12737 2.034842 CCGATCGTGAGTTTGTTATCGC 60.035 50.000 15.09 0.00 35.96 4.58
7398 12738 2.034842 CGATCGTGAGTTTGTTATCGCC 60.035 50.000 7.03 0.00 31.14 5.54
7399 12739 2.442212 TCGTGAGTTTGTTATCGCCA 57.558 45.000 0.00 0.00 0.00 5.69
7400 12740 2.063266 TCGTGAGTTTGTTATCGCCAC 58.937 47.619 0.00 0.00 0.00 5.01
7401 12741 1.127951 CGTGAGTTTGTTATCGCCACC 59.872 52.381 0.00 0.00 0.00 4.61
7402 12742 1.127951 GTGAGTTTGTTATCGCCACCG 59.872 52.381 0.00 0.00 0.00 4.94
7403 12743 0.725117 GAGTTTGTTATCGCCACCGG 59.275 55.000 0.00 0.00 34.56 5.28
7404 12744 1.135939 GTTTGTTATCGCCACCGGC 59.864 57.895 0.00 0.00 46.75 6.13
7432 12772 2.890371 GGGACGTACGTGATGGCT 59.110 61.111 28.16 0.00 0.00 4.75
7433 12773 1.217244 GGGACGTACGTGATGGCTT 59.783 57.895 28.16 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.711949 CCCTCGCACCAGCTGCTT 62.712 66.667 8.66 0.00 44.64 3.91
15 16 3.474570 GATCCCCTCGCACCAGCT 61.475 66.667 0.00 0.00 39.10 4.24
81 83 0.677731 AGTATGCAGCACCACGCATT 60.678 50.000 0.00 0.00 46.49 3.56
125 130 3.131396 AGAGTTGTCGAAATGAAAGCGT 58.869 40.909 0.00 0.00 0.00 5.07
253 258 3.421394 TCACCCTAGAACCCAGATCAT 57.579 47.619 0.00 0.00 0.00 2.45
374 379 0.909133 TCACTGGCTGCCACCATAGA 60.909 55.000 19.30 8.37 39.54 1.98
387 392 4.278170 ACCATACATGTTTTGTGTCACTGG 59.722 41.667 2.30 2.04 39.48 4.00
405 411 1.279025 GGGAGGAAGGCACCACCATA 61.279 60.000 15.84 0.00 41.37 2.74
407 413 3.256960 GGGAGGAAGGCACCACCA 61.257 66.667 15.84 0.00 41.37 4.17
514 520 7.926018 ACAAGAAAACAAAGAGCGGAAATAAAT 59.074 29.630 0.00 0.00 0.00 1.40
555 561 3.433031 CCATCAACGGGCTAGGATTACAA 60.433 47.826 0.00 0.00 0.00 2.41
569 575 6.761731 TTTGAATTAACAAAGCCATCAACG 57.238 33.333 0.00 0.00 35.29 4.10
644 650 1.359475 GCTCGACCCGATGAGTACC 59.641 63.158 0.00 0.00 34.61 3.34
665 671 1.293179 GAAAACCAGCACCATGCCC 59.707 57.895 0.00 0.00 46.52 5.36
672 678 2.335011 GCCACGGAAAACCAGCAC 59.665 61.111 0.00 0.00 0.00 4.40
741 747 0.522180 GACGTGACAGATGGACGAGT 59.478 55.000 12.00 0.00 36.90 4.18
743 749 0.240145 GTGACGTGACAGATGGACGA 59.760 55.000 0.00 0.00 36.90 4.20
837 843 1.045911 GGAGCAGGTGTCTAGGGGAG 61.046 65.000 0.00 0.00 0.00 4.30
838 844 1.001760 GGAGCAGGTGTCTAGGGGA 59.998 63.158 0.00 0.00 0.00 4.81
839 845 2.066999 GGGAGCAGGTGTCTAGGGG 61.067 68.421 0.00 0.00 0.00 4.79
840 846 1.002274 AGGGAGCAGGTGTCTAGGG 59.998 63.158 0.00 0.00 0.00 3.53
919 925 4.832608 GTGGGATCGGTCGGTGGC 62.833 72.222 0.00 0.00 0.00 5.01
920 926 4.157120 GGTGGGATCGGTCGGTGG 62.157 72.222 0.00 0.00 0.00 4.61
921 927 4.157120 GGGTGGGATCGGTCGGTG 62.157 72.222 0.00 0.00 0.00 4.94
935 941 2.122547 AGGAACGGTGAGGTGGGT 60.123 61.111 0.00 0.00 0.00 4.51
996 1002 2.365105 GAGGGGGTGGTCATCGGA 60.365 66.667 0.00 0.00 0.00 4.55
1234 1258 4.926860 TTCAGCATATGACAAACTCACG 57.073 40.909 6.97 0.00 37.77 4.35
1394 1439 1.542472 TGAGCACCACAAAGCATGATG 59.458 47.619 0.00 0.00 0.00 3.07
1395 1440 1.913778 TGAGCACCACAAAGCATGAT 58.086 45.000 0.00 0.00 0.00 2.45
1401 1446 3.635331 CTGACAAATGAGCACCACAAAG 58.365 45.455 0.00 0.00 0.00 2.77
1410 1455 1.127582 GACAGTCGCTGACAAATGAGC 59.872 52.381 12.77 0.00 34.60 4.26
1444 1495 1.815003 AGAAGCAGCAAATAGTGGCAC 59.185 47.619 10.29 10.29 0.00 5.01
1504 1555 2.456577 TCACCTCATCGTCATCCAAGA 58.543 47.619 0.00 0.00 0.00 3.02
1520 1571 1.363744 CCTCTGTTCGATGCTTCACC 58.636 55.000 0.08 0.00 0.00 4.02
1527 1578 2.538437 CTCTTCTGCCTCTGTTCGATG 58.462 52.381 0.00 0.00 0.00 3.84
1550 1601 4.140924 ACAATCTCCTTCCCCTGTTTCTTT 60.141 41.667 0.00 0.00 0.00 2.52
1637 1688 1.281925 AACCATCGGGGAGCCAGAAT 61.282 55.000 0.84 0.00 41.15 2.40
1726 1777 4.393371 TCGGAATCACGCAAATAATGTTCA 59.607 37.500 0.00 0.00 0.00 3.18
1731 1782 7.672983 ATAGATTCGGAATCACGCAAATAAT 57.327 32.000 27.39 9.49 40.42 1.28
1784 1835 1.199789 CCCAACATCAACATGGTCACG 59.800 52.381 0.00 0.00 33.82 4.35
1912 1963 8.303876 TGGCTAACTCATAAGGAATTTGTTTTC 58.696 33.333 0.00 0.00 0.00 2.29
2144 2200 6.471233 TCGTCCATCTCTGAGAACAAATAT 57.529 37.500 12.00 0.00 0.00 1.28
2192 2248 0.319900 GAAGCTCGTTGTCCTCAGCA 60.320 55.000 0.00 0.00 0.00 4.41
2261 2319 3.417101 TGCAACATTCAGGGAATTACGT 58.583 40.909 0.00 0.00 28.87 3.57
2262 2320 4.637483 ATGCAACATTCAGGGAATTACG 57.363 40.909 0.00 0.00 28.87 3.18
2263 2321 6.318648 TCTGTATGCAACATTCAGGGAATTAC 59.681 38.462 12.42 0.00 37.50 1.89
2264 2322 6.422333 TCTGTATGCAACATTCAGGGAATTA 58.578 36.000 12.42 0.00 37.50 1.40
2265 2323 5.263599 TCTGTATGCAACATTCAGGGAATT 58.736 37.500 12.42 0.00 37.50 2.17
2271 2329 6.327177 GCATTTTCTGTATGCAACATTCAG 57.673 37.500 7.62 7.62 45.93 3.02
2299 2357 3.047877 CAACCGTCCGGAAGCCAC 61.048 66.667 5.23 0.00 38.96 5.01
2347 2405 7.776107 TGAAATCAACCTTGTACATTTTGTCA 58.224 30.769 0.00 0.00 0.00 3.58
2436 2494 3.159213 TGGACAAATCTGAGTTGCCAT 57.841 42.857 21.36 4.95 31.54 4.40
2565 2624 3.622163 CCATTCTAGAAGCAAGCACAGAG 59.378 47.826 11.53 0.00 0.00 3.35
2568 2627 2.086869 GCCATTCTAGAAGCAAGCACA 58.913 47.619 11.53 0.00 0.00 4.57
2615 2674 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2616 2675 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2617 2676 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2618 2677 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2619 2678 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2620 2679 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2621 2680 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2622 2681 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2623 2682 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2624 2683 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2625 2684 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2626 2685 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
2627 2686 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
2628 2687 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
2634 2693 8.748412 CCCTTTTATCCATTTTGATGACAAGTA 58.252 33.333 0.00 0.00 37.32 2.24
2635 2694 7.310609 CCCCTTTTATCCATTTTGATGACAAGT 60.311 37.037 0.00 0.00 37.32 3.16
2636 2695 7.043565 CCCCTTTTATCCATTTTGATGACAAG 58.956 38.462 0.00 0.00 37.32 3.16
2637 2696 6.728164 TCCCCTTTTATCCATTTTGATGACAA 59.272 34.615 0.00 0.00 0.00 3.18
2638 2697 6.259893 TCCCCTTTTATCCATTTTGATGACA 58.740 36.000 0.00 0.00 0.00 3.58
2639 2698 6.790232 TCCCCTTTTATCCATTTTGATGAC 57.210 37.500 0.00 0.00 0.00 3.06
2640 2699 6.902416 ACATCCCCTTTTATCCATTTTGATGA 59.098 34.615 0.00 0.00 32.39 2.92
2641 2700 7.128234 ACATCCCCTTTTATCCATTTTGATG 57.872 36.000 0.00 0.00 33.80 3.07
2642 2701 9.093458 GATACATCCCCTTTTATCCATTTTGAT 57.907 33.333 0.00 0.00 0.00 2.57
2643 2702 8.288812 AGATACATCCCCTTTTATCCATTTTGA 58.711 33.333 0.00 0.00 0.00 2.69
2644 2703 8.482852 AGATACATCCCCTTTTATCCATTTTG 57.517 34.615 0.00 0.00 0.00 2.44
2645 2704 9.813826 CTAGATACATCCCCTTTTATCCATTTT 57.186 33.333 0.00 0.00 0.00 1.82
2646 2705 9.182642 TCTAGATACATCCCCTTTTATCCATTT 57.817 33.333 0.00 0.00 0.00 2.32
2647 2706 8.757307 TCTAGATACATCCCCTTTTATCCATT 57.243 34.615 0.00 0.00 0.00 3.16
2648 2707 8.776119 CATCTAGATACATCCCCTTTTATCCAT 58.224 37.037 4.54 0.00 0.00 3.41
2649 2708 7.739444 ACATCTAGATACATCCCCTTTTATCCA 59.261 37.037 4.54 0.00 0.00 3.41
2650 2709 8.152023 ACATCTAGATACATCCCCTTTTATCC 57.848 38.462 4.54 0.00 0.00 2.59
2657 2716 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
2695 2754 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
2703 2762 7.975616 CGGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
2704 2763 7.175816 TCGGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
2705 2764 7.273381 GTCGGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
2706 2765 7.807433 TGTCGGAAAATACTTGTCATCAAAATG 59.193 33.333 0.00 0.00 32.87 2.32
2707 2766 7.881142 TGTCGGAAAATACTTGTCATCAAAAT 58.119 30.769 0.00 0.00 32.87 1.82
2708 2767 7.227711 TCTGTCGGAAAATACTTGTCATCAAAA 59.772 33.333 0.00 0.00 32.87 2.44
2709 2768 6.708502 TCTGTCGGAAAATACTTGTCATCAAA 59.291 34.615 0.00 0.00 32.87 2.69
2710 2769 6.227522 TCTGTCGGAAAATACTTGTCATCAA 58.772 36.000 0.00 0.00 0.00 2.57
2711 2770 5.789521 TCTGTCGGAAAATACTTGTCATCA 58.210 37.500 0.00 0.00 0.00 3.07
2712 2771 5.292101 CCTCTGTCGGAAAATACTTGTCATC 59.708 44.000 0.00 0.00 0.00 2.92
2713 2772 5.178797 CCTCTGTCGGAAAATACTTGTCAT 58.821 41.667 0.00 0.00 0.00 3.06
2714 2773 4.562757 CCCTCTGTCGGAAAATACTTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
2715 2774 3.933332 CCCTCTGTCGGAAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
2716 2775 3.581332 TCCCTCTGTCGGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
2717 2776 4.184629 CTCCCTCTGTCGGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
2718 2777 3.838903 ACTCCCTCTGTCGGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
2719 2778 3.442076 ACTCCCTCTGTCGGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
2720 2779 3.889520 ACTCCCTCTGTCGGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
2721 2780 4.863548 TCTACTCCCTCTGTCGGAAAATA 58.136 43.478 0.00 0.00 0.00 1.40
2722 2781 3.709587 TCTACTCCCTCTGTCGGAAAAT 58.290 45.455 0.00 0.00 0.00 1.82
2723 2782 3.165087 TCTACTCCCTCTGTCGGAAAA 57.835 47.619 0.00 0.00 0.00 2.29
2724 2783 2.893215 TCTACTCCCTCTGTCGGAAA 57.107 50.000 0.00 0.00 0.00 3.13
2725 2784 2.893215 TTCTACTCCCTCTGTCGGAA 57.107 50.000 0.00 0.00 0.00 4.30
2726 2785 3.201487 TGTATTCTACTCCCTCTGTCGGA 59.799 47.826 0.00 0.00 0.00 4.55
2727 2786 3.552875 TGTATTCTACTCCCTCTGTCGG 58.447 50.000 0.00 0.00 0.00 4.79
2728 2787 5.067936 ACAATGTATTCTACTCCCTCTGTCG 59.932 44.000 0.00 0.00 0.00 4.35
2729 2788 6.322712 AGACAATGTATTCTACTCCCTCTGTC 59.677 42.308 0.00 0.00 0.00 3.51
2730 2789 6.097554 CAGACAATGTATTCTACTCCCTCTGT 59.902 42.308 0.00 0.00 0.00 3.41
2731 2790 6.097554 ACAGACAATGTATTCTACTCCCTCTG 59.902 42.308 0.00 0.00 41.60 3.35
2732 2791 6.198639 ACAGACAATGTATTCTACTCCCTCT 58.801 40.000 0.00 0.00 41.60 3.69
2733 2792 6.472686 ACAGACAATGTATTCTACTCCCTC 57.527 41.667 0.00 0.00 41.60 4.30
2889 2948 6.219302 ACGTAAAACTACAAAAGACATCCG 57.781 37.500 0.00 0.00 0.00 4.18
2991 3050 1.003355 ACACAGCCCCTTCACATCG 60.003 57.895 0.00 0.00 0.00 3.84
3103 3162 4.700213 TGCAAATAGGTCCAAAGCTTAGTC 59.300 41.667 0.00 0.00 34.40 2.59
3333 3392 4.500545 CGGAATAGAAGATGACTGACAGGG 60.501 50.000 7.51 0.00 0.00 4.45
3557 3616 9.569167 GATGATATACATTAGCTGCGTACTTAA 57.431 33.333 0.00 0.00 39.56 1.85
3558 3617 8.188799 GGATGATATACATTAGCTGCGTACTTA 58.811 37.037 0.00 0.00 39.56 2.24
3652 3712 8.357290 TGTAGTAGAAACAAGCCTCAGTATAA 57.643 34.615 0.00 0.00 0.00 0.98
3720 3813 9.660180 AGAAGATCTGAACACTTCTAAATTACC 57.340 33.333 17.15 0.00 45.28 2.85
3774 3867 2.159517 GCATTTTTCGAGGCTGGTAGTG 60.160 50.000 0.00 0.00 0.00 2.74
3836 3930 3.557577 TCAAAGACCAATGATTGCACG 57.442 42.857 0.00 0.00 0.00 5.34
3845 3939 8.923270 TCAGGTAATTTCTTTTCAAAGACCAAT 58.077 29.630 1.28 0.00 44.18 3.16
3881 3975 3.250744 CAGGAACTTACAGCGATTCGAA 58.749 45.455 10.88 0.00 34.60 3.71
3912 4006 8.540507 ACTATACTCTGAGAACACCATGTAAT 57.459 34.615 12.44 0.00 0.00 1.89
3964 4058 4.023622 ACTGCGCCATATATAGCTATCGAG 60.024 45.833 10.16 8.35 0.00 4.04
3966 4060 4.230314 ACTGCGCCATATATAGCTATCG 57.770 45.455 10.16 7.67 0.00 2.92
4123 4261 2.168728 GGGGCATATAGTAGGCTAGTGC 59.831 54.545 12.17 6.50 39.75 4.40
4163 4301 5.476599 GCCCCATAGCATATCAACAACATAA 59.523 40.000 0.00 0.00 0.00 1.90
4225 4363 7.540474 TGACTGAACTACCAGAGATAAAGTT 57.460 36.000 0.00 0.00 37.59 2.66
4478 4617 0.748005 CCAGGCCCCATACTTGTTCG 60.748 60.000 0.00 0.00 0.00 3.95
4484 4623 1.152271 ACTATAGCCAGGCCCCATACT 59.848 52.381 8.22 0.00 0.00 2.12
4524 4663 5.931146 GCCGTTGATCTTCTATCATCTTCAT 59.069 40.000 0.00 0.00 0.00 2.57
4562 4701 3.172339 CATGACCCAAATTTCCTCCCAA 58.828 45.455 0.00 0.00 0.00 4.12
4678 4818 3.693085 AGTTTCAACTCGCTCGATAGGTA 59.307 43.478 0.00 0.00 32.86 3.08
4733 4873 5.659048 ACGCTTTATAGCTAACTGATTGC 57.341 39.130 0.00 0.00 45.51 3.56
4960 5100 5.426689 TCTATCAACCAATCTTGCTCTGT 57.573 39.130 0.00 0.00 0.00 3.41
5283 5446 5.924254 ACATGATGTGCAGATTTTGTCAAAG 59.076 36.000 0.00 0.00 0.00 2.77
5308 5471 4.387026 AACTTTCATTCCTGGGACATGA 57.613 40.909 0.00 9.02 38.20 3.07
5673 6267 6.559810 CACAATAAAGAGGAAACACACAACA 58.440 36.000 0.00 0.00 0.00 3.33
5714 6308 3.713936 CATGAGCTGCAACATGGTG 57.286 52.632 22.66 6.32 39.79 4.17
5791 6385 4.277423 GGTTCTTTGCCTTTAGCTTGTACA 59.723 41.667 0.00 0.00 44.23 2.90
5849 6443 6.995686 TGCTTGGTAGTCTTTGAACTAATTGA 59.004 34.615 0.00 0.00 33.68 2.57
5861 6455 2.656947 TTGCCTTGCTTGGTAGTCTT 57.343 45.000 0.00 0.00 0.00 3.01
5908 6502 5.243060 GGTAGTAATTGGTTCTTTGCCTTGT 59.757 40.000 0.00 0.00 0.00 3.16
5961 6564 1.541588 CTTTGCCTTGCTTGGTAGTCC 59.458 52.381 0.00 0.00 0.00 3.85
6124 8918 7.549134 TCTGAAGCAATTTCGATATGTGTAGTT 59.451 33.333 0.00 0.00 38.71 2.24
6127 8921 6.816140 TGTCTGAAGCAATTTCGATATGTGTA 59.184 34.615 0.00 0.00 38.71 2.90
6159 8953 9.007901 CAGTTTCAGTATCAGATTCCTTTTTCT 57.992 33.333 0.00 0.00 0.00 2.52
6172 8966 7.453393 ACATTTTCTCTCCAGTTTCAGTATCA 58.547 34.615 0.00 0.00 0.00 2.15
6312 9106 1.368641 CTCACGCATTTCCGAATCCA 58.631 50.000 0.00 0.00 0.00 3.41
6317 9111 1.805539 CTCGCTCACGCATTTCCGA 60.806 57.895 0.00 0.00 39.84 4.55
6348 9166 0.321919 CCTTGCACTAGCTTCAGCCA 60.322 55.000 0.00 0.00 43.38 4.75
6366 9184 4.899239 CCGCGGAGGATGCTGACC 62.899 72.222 24.07 0.00 45.00 4.02
6371 9189 2.852495 TTCTTGACCGCGGAGGATGC 62.852 60.000 35.90 13.56 45.00 3.91
6399 9770 4.224818 AGCTCTGGTTGCTATTTCTTCTCT 59.775 41.667 0.00 0.00 39.21 3.10
6453 9826 5.181009 TGATTGATCAAGTCACAGGTGATC 58.819 41.667 14.54 8.50 45.19 2.92
6454 9827 5.046087 TCTGATTGATCAAGTCACAGGTGAT 60.046 40.000 22.31 3.23 37.91 3.06
6455 9828 4.284234 TCTGATTGATCAAGTCACAGGTGA 59.716 41.667 22.31 0.00 36.32 4.02
6456 9829 4.572909 TCTGATTGATCAAGTCACAGGTG 58.427 43.478 22.31 12.21 36.32 4.00
6473 9846 6.723339 ACAACTCAGTACTACTACCTCTGAT 58.277 40.000 0.00 0.00 35.17 2.90
6499 9872 8.250332 TGCACCTTTTTATTATCTGGTTTCATC 58.750 33.333 0.00 0.00 0.00 2.92
6500 9873 8.133024 TGCACCTTTTTATTATCTGGTTTCAT 57.867 30.769 0.00 0.00 0.00 2.57
6501 9874 7.531857 TGCACCTTTTTATTATCTGGTTTCA 57.468 32.000 0.00 0.00 0.00 2.69
6502 9875 8.303876 TCTTGCACCTTTTTATTATCTGGTTTC 58.696 33.333 0.00 0.00 0.00 2.78
6561 9938 9.691362 AATGTTAAGTCACATAAACCAATGTTC 57.309 29.630 0.00 0.00 38.01 3.18
6646 11881 1.999648 ACACCAGGCATCATGTGTTT 58.000 45.000 0.00 0.00 38.74 2.83
6701 11937 5.123820 TCCATCGGAAACAGCTTAATTTCAG 59.876 40.000 13.95 11.00 36.69 3.02
6904 12145 2.198426 CAAGGGGGCAACAGGTGT 59.802 61.111 0.00 0.00 39.74 4.16
6920 12161 1.075542 CATAAAGCAAGGACGCGTCA 58.924 50.000 37.26 17.26 36.85 4.35
6949 12200 2.112297 GTCGCCCCAACCAAGACA 59.888 61.111 0.00 0.00 32.57 3.41
6980 12231 3.391626 TCTCTATCGAAGACTCTAGGGCA 59.608 47.826 0.00 0.00 42.51 5.36
6984 12235 4.446385 CACGGTCTCTATCGAAGACTCTAG 59.554 50.000 13.85 7.31 42.51 2.43
7002 12283 4.250305 GGCACACCTCCACACGGT 62.250 66.667 0.00 0.00 34.38 4.83
7022 12303 4.271049 GTCGACCAGATCCAATACATGTTG 59.729 45.833 2.30 0.00 0.00 3.33
7030 12311 1.405526 CCAACGTCGACCAGATCCAAT 60.406 52.381 10.58 0.00 0.00 3.16
7033 12314 0.037605 AACCAACGTCGACCAGATCC 60.038 55.000 10.58 0.00 0.00 3.36
7050 12331 2.607038 GCCAAACAAATCCACCGAGAAC 60.607 50.000 0.00 0.00 0.00 3.01
7072 12357 3.934391 GAGACAAGCGTGGACCGGG 62.934 68.421 6.32 0.00 36.94 5.73
7079 12364 4.334203 ACAGATCTACTAGAGACAAGCGTG 59.666 45.833 0.00 0.00 36.87 5.34
7081 12366 6.795098 ATACAGATCTACTAGAGACAAGCG 57.205 41.667 0.00 0.00 36.87 4.68
7101 12386 6.882458 AACGAGAACTGACCGAATTTATAC 57.118 37.500 0.00 0.00 0.00 1.47
7102 12387 7.894376 AAAACGAGAACTGACCGAATTTATA 57.106 32.000 0.00 0.00 0.00 0.98
7103 12388 6.796705 AAAACGAGAACTGACCGAATTTAT 57.203 33.333 0.00 0.00 0.00 1.40
7104 12389 6.037391 ACAAAAACGAGAACTGACCGAATTTA 59.963 34.615 0.00 0.00 0.00 1.40
7107 12392 3.875134 ACAAAAACGAGAACTGACCGAAT 59.125 39.130 0.00 0.00 0.00 3.34
7110 12395 3.350912 CAACAAAAACGAGAACTGACCG 58.649 45.455 0.00 0.00 0.00 4.79
7112 12397 4.095610 CACCAACAAAAACGAGAACTGAC 58.904 43.478 0.00 0.00 0.00 3.51
7113 12398 3.754323 ACACCAACAAAAACGAGAACTGA 59.246 39.130 0.00 0.00 0.00 3.41
7114 12399 4.091453 ACACCAACAAAAACGAGAACTG 57.909 40.909 0.00 0.00 0.00 3.16
7115 12400 6.445357 AATACACCAACAAAAACGAGAACT 57.555 33.333 0.00 0.00 0.00 3.01
7116 12401 6.507299 GCAAATACACCAACAAAAACGAGAAC 60.507 38.462 0.00 0.00 0.00 3.01
7117 12402 5.517054 GCAAATACACCAACAAAAACGAGAA 59.483 36.000 0.00 0.00 0.00 2.87
7118 12403 5.038033 GCAAATACACCAACAAAAACGAGA 58.962 37.500 0.00 0.00 0.00 4.04
7152 12437 7.254137 TGACAATGAAAAACGTTGATCAGAAA 58.746 30.769 17.81 3.97 45.31 2.52
7155 12440 5.116074 GCTGACAATGAAAAACGTTGATCAG 59.884 40.000 17.81 18.29 45.31 2.90
7161 12446 4.743493 ACTTGCTGACAATGAAAAACGTT 58.257 34.783 0.00 0.00 34.61 3.99
7189 12474 5.124776 CAGAAAATTGTCGTAATAAGGCCCA 59.875 40.000 0.00 0.00 0.00 5.36
7194 12479 8.926710 AGACAGTCAGAAAATTGTCGTAATAAG 58.073 33.333 2.66 0.00 43.48 1.73
7198 12483 7.924412 ACTTAGACAGTCAGAAAATTGTCGTAA 59.076 33.333 2.66 0.00 43.48 3.18
7206 12491 8.958119 TTGTTGTACTTAGACAGTCAGAAAAT 57.042 30.769 2.66 0.00 36.88 1.82
7211 12496 6.016192 TCCTCTTGTTGTACTTAGACAGTCAG 60.016 42.308 2.66 0.00 36.88 3.51
7219 12504 6.404293 GCTCTCTCTCCTCTTGTTGTACTTAG 60.404 46.154 0.00 0.00 0.00 2.18
7234 12519 8.361169 ACCTATCAAATTATAGCTCTCTCTCC 57.639 38.462 0.00 0.00 0.00 3.71
7268 12608 6.719370 TGAAATTATAGCTCTCTCTCCTCTCC 59.281 42.308 0.00 0.00 0.00 3.71
7283 12623 7.568861 GCCGAACACTCCGTAATGAAATTATAG 60.569 40.741 0.00 0.00 41.51 1.31
7321 12661 2.579873 TCCTAGGTCGGTTCCGATTAG 58.420 52.381 16.87 18.41 40.65 1.73
7360 12700 1.996798 TCGGGCCGAGAGATAAATCT 58.003 50.000 27.46 0.00 40.50 2.40
7361 12701 2.732597 CGATCGGGCCGAGAGATAAATC 60.733 54.545 33.82 21.50 39.91 2.17
7362 12702 1.202582 CGATCGGGCCGAGAGATAAAT 59.797 52.381 33.82 14.84 39.91 1.40
7363 12703 0.596577 CGATCGGGCCGAGAGATAAA 59.403 55.000 33.82 8.65 39.91 1.40
7364 12704 0.536687 ACGATCGGGCCGAGAGATAA 60.537 55.000 33.82 9.51 39.91 1.75
7365 12705 1.072678 ACGATCGGGCCGAGAGATA 59.927 57.895 33.82 10.35 39.91 1.98
7366 12706 2.203365 ACGATCGGGCCGAGAGAT 60.203 61.111 33.82 17.77 39.91 2.75
7367 12707 3.209812 CACGATCGGGCCGAGAGA 61.210 66.667 33.82 11.65 39.91 3.10
7368 12708 3.187699 CTCACGATCGGGCCGAGAG 62.188 68.421 33.82 27.79 39.91 3.20
7369 12709 3.209812 CTCACGATCGGGCCGAGA 61.210 66.667 33.82 23.17 39.91 4.04
7370 12710 2.558554 AAACTCACGATCGGGCCGAG 62.559 60.000 33.82 23.18 39.91 4.63
7371 12711 2.642254 AAACTCACGATCGGGCCGA 61.642 57.895 33.10 33.10 41.13 5.54
7372 12712 2.125673 AAACTCACGATCGGGCCG 60.126 61.111 22.51 22.51 0.00 6.13
7373 12713 0.953960 AACAAACTCACGATCGGGCC 60.954 55.000 20.98 0.00 0.00 5.80
7374 12714 1.717194 TAACAAACTCACGATCGGGC 58.283 50.000 20.98 0.00 0.00 6.13
7375 12715 2.534349 CGATAACAAACTCACGATCGGG 59.466 50.000 20.98 16.98 34.12 5.14
7376 12716 2.034842 GCGATAACAAACTCACGATCGG 60.035 50.000 20.98 8.65 37.31 4.18
7377 12717 2.034842 GGCGATAACAAACTCACGATCG 60.035 50.000 14.88 14.88 39.26 3.69
7378 12718 2.927477 TGGCGATAACAAACTCACGATC 59.073 45.455 0.00 0.00 0.00 3.69
7379 12719 2.671396 GTGGCGATAACAAACTCACGAT 59.329 45.455 0.00 0.00 0.00 3.73
7380 12720 2.063266 GTGGCGATAACAAACTCACGA 58.937 47.619 0.00 0.00 0.00 4.35
7381 12721 1.127951 GGTGGCGATAACAAACTCACG 59.872 52.381 0.00 0.00 0.00 4.35
7382 12722 1.127951 CGGTGGCGATAACAAACTCAC 59.872 52.381 0.00 0.00 0.00 3.51
7383 12723 1.434555 CGGTGGCGATAACAAACTCA 58.565 50.000 0.00 0.00 0.00 3.41
7384 12724 0.725117 CCGGTGGCGATAACAAACTC 59.275 55.000 0.00 0.00 0.00 3.01
7385 12725 1.303091 GCCGGTGGCGATAACAAACT 61.303 55.000 1.90 0.00 39.62 2.66
7386 12726 1.135939 GCCGGTGGCGATAACAAAC 59.864 57.895 1.90 0.00 39.62 2.93
7387 12727 3.580916 GCCGGTGGCGATAACAAA 58.419 55.556 1.90 0.00 39.62 2.83
7405 12745 3.687102 TACGTCCCGGTGCCTGTG 61.687 66.667 0.00 0.00 0.00 3.66
7406 12746 3.688159 GTACGTCCCGGTGCCTGT 61.688 66.667 0.00 0.00 0.00 4.00
7407 12747 4.789075 CGTACGTCCCGGTGCCTG 62.789 72.222 7.22 0.00 0.00 4.85
7410 12750 3.346631 ATCACGTACGTCCCGGTGC 62.347 63.158 19.94 0.00 0.00 5.01
7411 12751 1.515519 CATCACGTACGTCCCGGTG 60.516 63.158 19.94 10.58 0.00 4.94
7412 12752 2.703798 CCATCACGTACGTCCCGGT 61.704 63.158 19.94 0.11 0.00 5.28
7413 12753 2.103538 CCATCACGTACGTCCCGG 59.896 66.667 19.94 14.59 0.00 5.73
7414 12754 2.552585 AAGCCATCACGTACGTCCCG 62.553 60.000 19.94 8.00 0.00 5.14
7415 12755 1.217244 AAGCCATCACGTACGTCCC 59.783 57.895 19.94 5.12 0.00 4.46
7416 12756 4.904466 AAGCCATCACGTACGTCC 57.096 55.556 19.94 4.77 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.