Multiple sequence alignment - TraesCS2B01G090500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G090500 chr2B 100.000 3563 0 0 1 3563 51879634 51876072 0.000000e+00 6580.0
1 TraesCS2B01G090500 chr2B 94.846 1397 55 3 1609 3005 52113228 52114607 0.000000e+00 2165.0
2 TraesCS2B01G090500 chr2B 89.121 1434 141 6 1338 2763 52076986 52078412 0.000000e+00 1770.0
3 TraesCS2B01G090500 chr2B 83.054 1552 231 26 1026 2563 52105033 52106566 0.000000e+00 1380.0
4 TraesCS2B01G090500 chr2B 87.919 745 54 18 627 1344 51998778 51999513 0.000000e+00 845.0
5 TraesCS2B01G090500 chr2B 82.932 498 60 19 2086 2563 51850900 51851392 3.290000e-115 425.0
6 TraesCS2B01G090500 chr2B 74.886 438 92 13 1033 1457 51886652 51886220 2.180000e-42 183.0
7 TraesCS2B01G090500 chr2B 81.633 98 18 0 3283 3380 137193325 137193422 8.200000e-12 82.4
8 TraesCS2B01G090500 chr2B 97.297 37 1 0 3003 3039 545865901 545865937 2.970000e-06 63.9
9 TraesCS2B01G090500 chr2D 93.395 2392 109 17 627 3005 31745462 31743107 0.000000e+00 3496.0
10 TraesCS2B01G090500 chr2D 91.337 2101 139 21 834 2914 31857820 31859897 0.000000e+00 2832.0
11 TraesCS2B01G090500 chr2D 84.354 588 72 16 49 628 298845541 298846116 3.110000e-155 558.0
12 TraesCS2B01G090500 chr2D 87.429 175 14 2 2822 2996 31748748 31748582 1.010000e-45 195.0
13 TraesCS2B01G090500 chr2D 100.000 29 0 0 3011 3039 11295598 11295570 2.000000e-03 54.7
14 TraesCS2B01G090500 chr2A 94.507 1693 81 8 1316 3005 33652620 33650937 0.000000e+00 2601.0
15 TraesCS2B01G090500 chr2A 83.193 1547 239 18 1026 2563 33712702 33714236 0.000000e+00 1397.0
16 TraesCS2B01G090500 chr2A 93.115 305 18 1 983 1284 33652927 33652623 9.080000e-121 444.0
17 TraesCS2B01G090500 chr2A 95.676 185 4 2 627 811 33654801 33654621 9.670000e-76 294.0
18 TraesCS2B01G090500 chr2A 97.368 152 2 1 803 954 33653075 33652926 1.270000e-64 257.0
19 TraesCS2B01G090500 chr2A 75.000 512 92 24 2033 2535 33659054 33658570 1.680000e-48 204.0
20 TraesCS2B01G090500 chr2A 86.842 76 4 5 11 84 211299958 211300029 2.950000e-11 80.5
21 TraesCS2B01G090500 chr1D 91.564 569 40 6 3001 3563 31057515 31056949 0.000000e+00 778.0
22 TraesCS2B01G090500 chr1D 85.154 586 71 13 48 627 199563582 199564157 1.430000e-163 586.0
23 TraesCS2B01G090500 chr5D 83.703 632 79 18 11 627 525393200 525393822 3.080000e-160 575.0
24 TraesCS2B01G090500 chr5D 84.184 588 72 16 49 629 353463297 353463870 5.200000e-153 551.0
25 TraesCS2B01G090500 chr3D 84.992 593 58 16 50 628 8688005 8688580 1.110000e-159 573.0
26 TraesCS2B01G090500 chr3D 84.237 590 76 15 50 627 608802160 608801576 3.110000e-155 558.0
27 TraesCS2B01G090500 chr3D 95.946 74 3 0 3454 3527 565408416 565408489 1.740000e-23 121.0
28 TraesCS2B01G090500 chr3D 94.595 37 2 0 3001 3037 36573932 36573968 1.380000e-04 58.4
29 TraesCS2B01G090500 chr6D 84.150 612 72 18 44 638 470887386 470886783 1.440000e-158 569.0
30 TraesCS2B01G090500 chr6D 85.185 567 69 11 67 627 40537905 40538462 5.160000e-158 568.0
31 TraesCS2B01G090500 chr6D 100.000 36 0 0 3004 3039 79872434 79872469 2.300000e-07 67.6
32 TraesCS2B01G090500 chr6D 97.500 40 0 1 3000 3039 313884765 313884727 2.300000e-07 67.6
33 TraesCS2B01G090500 chr5A 84.615 585 69 14 50 627 320937009 320936439 2.400000e-156 562.0
34 TraesCS2B01G090500 chr5A 94.444 36 0 2 3006 3039 340475032 340474997 2.000000e-03 54.7
35 TraesCS2B01G090500 chr1B 78.692 474 92 8 3096 3563 31681125 31680655 1.240000e-79 307.0
36 TraesCS2B01G090500 chr3B 86.347 271 28 9 119 384 762593792 762593526 1.620000e-73 287.0
37 TraesCS2B01G090500 chr3A 82.117 274 36 11 114 382 749446177 749446442 4.630000e-54 222.0
38 TraesCS2B01G090500 chr7B 72.818 401 95 11 3114 3504 69534701 69534305 1.340000e-24 124.0
39 TraesCS2B01G090500 chr1A 72.160 449 95 23 3088 3523 532668887 532668456 3.760000e-20 110.0
40 TraesCS2B01G090500 chr1A 94.872 39 2 0 3001 3039 589655397 589655435 1.070000e-05 62.1
41 TraesCS2B01G090500 chr7A 87.500 88 7 3 1 87 579767460 579767376 8.140000e-17 99.0
42 TraesCS2B01G090500 chr5B 83.696 92 15 0 3295 3386 50328670 50328579 1.760000e-13 87.9
43 TraesCS2B01G090500 chr5B 100.000 35 0 0 3005 3039 456463082 456463116 8.260000e-07 65.8
44 TraesCS2B01G090500 chr6B 83.146 89 15 0 3298 3386 22884150 22884062 8.200000e-12 82.4
45 TraesCS2B01G090500 chr6A 83.146 89 15 0 3298 3386 270464189 270464101 8.200000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G090500 chr2B 51876072 51879634 3562 True 6580.0 6580 100.0000 1 3563 1 chr2B.!!$R1 3562
1 TraesCS2B01G090500 chr2B 52113228 52114607 1379 False 2165.0 2165 94.8460 1609 3005 1 chr2B.!!$F5 1396
2 TraesCS2B01G090500 chr2B 52076986 52078412 1426 False 1770.0 1770 89.1210 1338 2763 1 chr2B.!!$F3 1425
3 TraesCS2B01G090500 chr2B 52105033 52106566 1533 False 1380.0 1380 83.0540 1026 2563 1 chr2B.!!$F4 1537
4 TraesCS2B01G090500 chr2B 51998778 51999513 735 False 845.0 845 87.9190 627 1344 1 chr2B.!!$F2 717
5 TraesCS2B01G090500 chr2D 31857820 31859897 2077 False 2832.0 2832 91.3370 834 2914 1 chr2D.!!$F1 2080
6 TraesCS2B01G090500 chr2D 31743107 31748748 5641 True 1845.5 3496 90.4120 627 3005 2 chr2D.!!$R2 2378
7 TraesCS2B01G090500 chr2D 298845541 298846116 575 False 558.0 558 84.3540 49 628 1 chr2D.!!$F2 579
8 TraesCS2B01G090500 chr2A 33712702 33714236 1534 False 1397.0 1397 83.1930 1026 2563 1 chr2A.!!$F1 1537
9 TraesCS2B01G090500 chr2A 33650937 33659054 8117 True 760.0 2601 91.1332 627 3005 5 chr2A.!!$R1 2378
10 TraesCS2B01G090500 chr1D 31056949 31057515 566 True 778.0 778 91.5640 3001 3563 1 chr1D.!!$R1 562
11 TraesCS2B01G090500 chr1D 199563582 199564157 575 False 586.0 586 85.1540 48 627 1 chr1D.!!$F1 579
12 TraesCS2B01G090500 chr5D 525393200 525393822 622 False 575.0 575 83.7030 11 627 1 chr5D.!!$F2 616
13 TraesCS2B01G090500 chr5D 353463297 353463870 573 False 551.0 551 84.1840 49 629 1 chr5D.!!$F1 580
14 TraesCS2B01G090500 chr3D 8688005 8688580 575 False 573.0 573 84.9920 50 628 1 chr3D.!!$F1 578
15 TraesCS2B01G090500 chr3D 608801576 608802160 584 True 558.0 558 84.2370 50 627 1 chr3D.!!$R1 577
16 TraesCS2B01G090500 chr6D 470886783 470887386 603 True 569.0 569 84.1500 44 638 1 chr6D.!!$R2 594
17 TraesCS2B01G090500 chr6D 40537905 40538462 557 False 568.0 568 85.1850 67 627 1 chr6D.!!$F1 560
18 TraesCS2B01G090500 chr5A 320936439 320937009 570 True 562.0 562 84.6150 50 627 1 chr5A.!!$R1 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.101579 AAAACCGGCTGAAACAACCG 59.898 50.0 0.00 6.61 41.99 4.44 F
1093 6422 0.540830 CATCCTCTCCTACCTCCCCG 60.541 65.0 0.00 0.00 0.00 5.73 F
1582 6914 0.591488 CGCAGATGAGTACGCGCTTA 60.591 55.0 5.73 0.00 41.38 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1360 6692 0.034337 TAGAGCCACCGGTTCAACAC 59.966 55.000 2.97 0.0 35.33 3.32 R
2288 7627 2.284190 GCTGTTGCCTCCAGAAGTATC 58.716 52.381 0.00 0.0 31.38 2.24 R
3191 8549 0.104120 TGGTCGTATCGATTGCAGGG 59.896 55.000 1.71 0.0 38.42 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.101579 AAAACCGGCTGAAACAACCG 59.898 50.000 0.00 6.61 41.99 4.44
37 38 1.440938 CGGCTGAAACAACCGAACCA 61.441 55.000 7.67 0.00 44.67 3.67
38 39 0.958822 GGCTGAAACAACCGAACCAT 59.041 50.000 0.00 0.00 0.00 3.55
47 48 2.819595 CCGAACCATGAGCACGGG 60.820 66.667 0.00 0.00 39.92 5.28
48 49 2.047274 CGAACCATGAGCACGGGT 60.047 61.111 0.00 0.00 36.19 5.28
110 111 1.686355 AATCACAACCGTGCCTTTCA 58.314 45.000 0.00 0.00 43.28 2.69
199 209 2.970324 GCACCGCCGTGACTTTCA 60.970 61.111 9.50 0.00 43.14 2.69
251 261 2.457366 AACCTTGACTCTCGCGAAAT 57.543 45.000 11.33 0.00 0.00 2.17
548 590 2.125713 CCCACAGCGCGACATGTA 60.126 61.111 12.10 0.00 0.00 2.29
630 672 1.412649 GCTAACTAGTGGCTCCCCCTA 60.413 57.143 12.18 0.00 0.00 3.53
690 4432 2.095372 CGAGTTGAATAAAGGGCCGAAC 59.905 50.000 0.00 0.00 0.00 3.95
821 6125 8.410141 TGTTCAGAAAATAAAATCTCGGTTGTT 58.590 29.630 0.00 0.00 0.00 2.83
822 6126 9.887406 GTTCAGAAAATAAAATCTCGGTTGTTA 57.113 29.630 0.00 0.00 0.00 2.41
1093 6422 0.540830 CATCCTCTCCTACCTCCCCG 60.541 65.000 0.00 0.00 0.00 5.73
1103 6432 3.330720 CCTCCCCGCCAAAGAGGT 61.331 66.667 0.00 0.00 41.96 3.85
1158 6487 1.738099 CTCCTTCGCCACCGTTGAG 60.738 63.158 0.00 0.00 35.54 3.02
1195 6524 1.966451 GACAAGGCCCACGACAAGG 60.966 63.158 0.00 0.00 0.00 3.61
1363 6695 2.524394 ACTGGGACTCTGCCGTGT 60.524 61.111 0.00 0.00 0.00 4.49
1389 6721 3.466881 TGGCTCTACCACGTGCTT 58.533 55.556 10.91 1.03 46.36 3.91
1467 6799 1.525077 GCACCACGTCAAGGAACCA 60.525 57.895 0.00 0.00 0.00 3.67
1560 6892 4.839121 CGAGCTACTCCTATCAGTCCTAT 58.161 47.826 0.00 0.00 0.00 2.57
1582 6914 0.591488 CGCAGATGAGTACGCGCTTA 60.591 55.000 5.73 0.00 41.38 3.09
1725 7057 3.361977 GGCGGCAACATCCAACGT 61.362 61.111 3.07 0.00 0.00 3.99
1768 7100 2.122167 ATCGACCTCACCCTCGAGC 61.122 63.158 6.99 0.00 41.95 5.03
1901 7240 0.807667 GTCCGAGCGAGCATTGATGT 60.808 55.000 0.00 0.00 0.00 3.06
2279 7618 3.928754 AGCCAGGTTATGAGGACAGATA 58.071 45.455 0.00 0.00 0.00 1.98
2288 7627 2.031870 TGAGGACAGATATCACACCGG 58.968 52.381 0.00 0.00 0.00 5.28
2441 7780 2.353011 CCAACCTGCTGCTTTGTAATGG 60.353 50.000 0.00 0.00 0.00 3.16
2613 7957 2.223363 GCGCATTTTCTCTTAGAAGGCC 60.223 50.000 0.30 0.00 35.37 5.19
2621 7965 7.839680 TTTTCTCTTAGAAGGCCAGAATTTT 57.160 32.000 5.01 0.00 35.37 1.82
2693 8039 3.517296 TGGAAGCTATTGGTGTGGAAA 57.483 42.857 0.00 0.00 0.00 3.13
2728 8074 6.071896 CCTCATGAAAGCCATCGAGTAGTATA 60.072 42.308 0.00 0.00 32.96 1.47
2816 8162 3.281727 AATGGTTCTATGTCATGGCGT 57.718 42.857 0.00 0.00 0.00 5.68
3063 8421 0.538057 CAAAGAGAGCCAGCACCCAA 60.538 55.000 0.00 0.00 0.00 4.12
3069 8427 1.369091 GAGCCAGCACCCAACATACG 61.369 60.000 0.00 0.00 0.00 3.06
3073 8431 0.669318 CAGCACCCAACATACGACGT 60.669 55.000 5.52 5.52 0.00 4.34
3123 8481 4.483476 AAACGGCAAAGATACAAGACAC 57.517 40.909 0.00 0.00 0.00 3.67
3125 8483 2.224426 ACGGCAAAGATACAAGACACCA 60.224 45.455 0.00 0.00 0.00 4.17
3126 8484 2.811431 CGGCAAAGATACAAGACACCAA 59.189 45.455 0.00 0.00 0.00 3.67
3142 8500 1.243902 CCAAAGGAGCCGCTAACAAA 58.756 50.000 0.00 0.00 0.00 2.83
3145 8503 1.809684 AAGGAGCCGCTAACAAAGTC 58.190 50.000 0.00 0.00 0.00 3.01
3152 8510 2.484264 GCCGCTAACAAAGTCTGAATGT 59.516 45.455 0.00 0.00 0.00 2.71
3161 8519 5.308825 ACAAAGTCTGAATGTACCAAGAGG 58.691 41.667 0.00 0.00 42.21 3.69
3162 8520 3.618690 AGTCTGAATGTACCAAGAGGC 57.381 47.619 0.00 0.00 39.06 4.70
3171 8529 0.174845 TACCAAGAGGCGGAACATCG 59.825 55.000 0.00 0.00 39.06 3.84
3179 8537 1.218316 GCGGAACATCGAGACCCTT 59.782 57.895 0.00 0.00 0.00 3.95
3180 8538 0.458669 GCGGAACATCGAGACCCTTA 59.541 55.000 0.00 0.00 0.00 2.69
3191 8549 0.535797 AGACCCTTAGCTAACACGGC 59.464 55.000 0.86 0.00 0.00 5.68
3205 8563 1.227556 ACGGCCCTGCAATCGATAC 60.228 57.895 0.00 0.00 0.00 2.24
3265 8623 1.414181 ACGCTCCATCAACTCCCATAG 59.586 52.381 0.00 0.00 0.00 2.23
3290 8648 0.388134 CCGTCGTTGTTCCGTCATCT 60.388 55.000 0.00 0.00 0.00 2.90
3301 8659 0.036952 CCGTCATCTGTGTCTGCCTT 60.037 55.000 0.00 0.00 0.00 4.35
3303 8661 1.354040 GTCATCTGTGTCTGCCTTCG 58.646 55.000 0.00 0.00 0.00 3.79
3385 8743 1.828660 CTCACCCCCGAGCTCGTAT 60.829 63.158 32.41 13.44 37.74 3.06
3388 8746 1.152525 ACCCCCGAGCTCGTATGAT 60.153 57.895 32.41 12.74 37.74 2.45
3391 8749 1.613520 CCCCCGAGCTCGTATGATCTA 60.614 57.143 32.41 0.00 37.74 1.98
3405 8763 6.039047 TCGTATGATCTAGACCAACAGGTAAC 59.961 42.308 0.00 0.00 35.25 2.50
3418 8777 0.702902 AGGTAACAGGGAGAGGACGA 59.297 55.000 0.00 0.00 41.41 4.20
3442 8801 0.249911 ACGACAACCTCCTCTTGCAC 60.250 55.000 0.00 0.00 0.00 4.57
3452 8811 1.600076 CTCTTGCACAGCAGCACCT 60.600 57.895 0.00 0.00 45.61 4.00
3527 8886 2.243478 AGGAGCATCTCTGTAGAGTCCA 59.757 50.000 14.87 0.00 42.60 4.02
3532 8891 3.004315 GCATCTCTGTAGAGTCCAGTAGC 59.996 52.174 8.63 1.56 42.60 3.58
3551 8910 3.266240 CCCCCACCAACTTCTAAGC 57.734 57.895 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.350772 GCTCATGGTTCGGTTGTTTCAG 60.351 50.000 0.00 0.00 0.00 3.02
22 23 1.606668 GCTCATGGTTCGGTTGTTTCA 59.393 47.619 0.00 0.00 0.00 2.69
27 28 1.497278 CGTGCTCATGGTTCGGTTG 59.503 57.895 0.00 0.00 0.00 3.77
32 33 0.958822 AAAACCCGTGCTCATGGTTC 59.041 50.000 9.40 0.00 41.40 3.62
110 111 1.940613 GAGTCACGGTTTTGCTTCTGT 59.059 47.619 0.00 0.00 0.00 3.41
170 179 2.584608 CGGTGCCTCCTCGGAAAT 59.415 61.111 0.00 0.00 33.16 2.17
279 295 1.964373 GGCCGTGCCTCTCGAAAAA 60.964 57.895 7.58 0.00 46.69 1.94
565 607 0.650512 CGATTAGCGTCATTTGGCGT 59.349 50.000 6.42 0.00 46.15 5.68
611 653 2.769602 TAGGGGGAGCCACTAGTTAG 57.230 55.000 0.00 0.00 38.71 2.34
630 672 3.350833 GGACAATTTCAGTCAGCCAGAT 58.649 45.455 0.00 0.00 37.74 2.90
711 4457 5.049612 CAGGAAAAGAACCGGTCTAACTTTC 60.050 44.000 8.04 12.56 34.56 2.62
1150 6479 1.779061 AAGGACATGGCCTCAACGGT 61.779 55.000 23.84 0.00 37.26 4.83
1158 6487 1.450312 CTGGACGAAGGACATGGCC 60.450 63.158 10.65 10.65 0.00 5.36
1195 6524 3.112709 GGTGAAGCTGCGGTCGTC 61.113 66.667 0.00 0.00 0.00 4.20
1360 6692 0.034337 TAGAGCCACCGGTTCAACAC 59.966 55.000 2.97 0.00 35.33 3.32
1363 6695 1.122632 TGGTAGAGCCACCGGTTCAA 61.123 55.000 2.97 0.00 43.61 2.69
1389 6721 1.577328 GCTCCTTGCTGCTGCGTTTA 61.577 55.000 11.21 0.00 43.34 2.01
1467 6799 0.814010 GGTCGCCTTCGCCATTGTAT 60.814 55.000 0.00 0.00 33.90 2.29
1560 6892 2.277949 GCGTACTCATCTGCGCGA 60.278 61.111 12.10 3.27 40.46 5.87
1582 6914 0.039074 CACGAGAAGAGGCTTCGTGT 60.039 55.000 24.14 6.06 45.91 4.49
1768 7100 1.777030 TTGTTTGTGTAGCCGCACCG 61.777 55.000 5.90 0.00 38.52 4.94
2279 7618 2.695666 CTCCAGAAGTATCCGGTGTGAT 59.304 50.000 0.00 0.00 0.00 3.06
2288 7627 2.284190 GCTGTTGCCTCCAGAAGTATC 58.716 52.381 0.00 0.00 31.38 2.24
2401 7740 4.481368 TGGCTAGATATTTGTGTCGGTT 57.519 40.909 0.00 0.00 0.00 4.44
2441 7780 2.554032 CACACTTGTTCCAGAACCATCC 59.446 50.000 8.01 0.00 40.46 3.51
2567 7911 9.169592 GCTTGGGTTTGACACTACTTATATAAA 57.830 33.333 0.00 0.00 0.00 1.40
2613 7957 5.796935 CGAGGATACACAAAGCAAAATTCTG 59.203 40.000 0.00 0.00 41.41 3.02
2621 7965 2.695359 GAACCGAGGATACACAAAGCA 58.305 47.619 0.00 0.00 41.41 3.91
3023 8376 7.500892 TCTTTGGCCGATGCTTTATAATCTAAA 59.499 33.333 0.00 0.00 37.74 1.85
3063 8421 4.624024 CCTGTTGTAATGAACGTCGTATGT 59.376 41.667 0.00 0.00 0.00 2.29
3069 8427 5.917541 TCTTTCCTGTTGTAATGAACGTC 57.082 39.130 0.00 0.00 0.00 4.34
3123 8481 1.200020 CTTTGTTAGCGGCTCCTTTGG 59.800 52.381 5.39 0.00 0.00 3.28
3125 8483 2.152016 GACTTTGTTAGCGGCTCCTTT 58.848 47.619 5.39 0.00 0.00 3.11
3126 8484 1.348036 AGACTTTGTTAGCGGCTCCTT 59.652 47.619 5.39 0.00 0.00 3.36
3142 8500 2.093973 CGCCTCTTGGTACATTCAGACT 60.094 50.000 0.00 0.00 39.30 3.24
3145 8503 1.207089 TCCGCCTCTTGGTACATTCAG 59.793 52.381 0.00 0.00 39.30 3.02
3152 8510 0.174845 CGATGTTCCGCCTCTTGGTA 59.825 55.000 0.00 0.00 35.27 3.25
3161 8519 0.458669 TAAGGGTCTCGATGTTCCGC 59.541 55.000 0.00 0.00 0.00 5.54
3162 8520 1.536284 GCTAAGGGTCTCGATGTTCCG 60.536 57.143 0.00 0.00 0.00 4.30
3171 8529 1.471153 GCCGTGTTAGCTAAGGGTCTC 60.471 57.143 6.38 0.00 0.00 3.36
3179 8537 1.832719 TTGCAGGGCCGTGTTAGCTA 61.833 55.000 25.40 6.43 0.00 3.32
3180 8538 2.484287 ATTGCAGGGCCGTGTTAGCT 62.484 55.000 25.40 5.01 0.00 3.32
3191 8549 0.104120 TGGTCGTATCGATTGCAGGG 59.896 55.000 1.71 0.00 38.42 4.45
3205 8563 1.798813 GTTGCTACCTTGTCTTGGTCG 59.201 52.381 0.00 0.00 38.88 4.79
3229 8587 4.000988 GGAGCGTGATTTTCCTCTAACAA 58.999 43.478 0.00 0.00 0.00 2.83
3230 8588 3.007506 TGGAGCGTGATTTTCCTCTAACA 59.992 43.478 0.00 0.00 32.12 2.41
3265 8623 3.351416 GAACAACGACGGTGGCCC 61.351 66.667 18.62 1.68 0.00 5.80
3290 8648 1.270305 CCTTCTTCGAAGGCAGACACA 60.270 52.381 24.37 0.00 0.00 3.72
3301 8659 3.717294 GCAGGGGGCCTTCTTCGA 61.717 66.667 0.84 0.00 36.11 3.71
3385 8743 4.466370 CCTGTTACCTGTTGGTCTAGATCA 59.534 45.833 0.14 0.14 44.78 2.92
3388 8746 3.170717 CCCTGTTACCTGTTGGTCTAGA 58.829 50.000 0.00 0.00 44.78 2.43
3391 8749 1.978580 CTCCCTGTTACCTGTTGGTCT 59.021 52.381 0.00 0.00 44.78 3.85
3405 8763 1.979155 TGCTGTCGTCCTCTCCCTG 60.979 63.158 0.00 0.00 0.00 4.45
3418 8777 1.115930 AGAGGAGGTTGTCGTGCTGT 61.116 55.000 0.00 0.00 30.83 4.40
3442 8801 1.466167 GTGATGTACAAGGTGCTGCTG 59.534 52.381 0.00 0.00 0.00 4.41
3452 8811 1.001520 CGGAGGTGTGGTGATGTACAA 59.998 52.381 0.00 0.00 0.00 2.41
3485 8844 3.434319 CGGCTGCTTGCGGTTGAT 61.434 61.111 0.00 0.00 44.05 2.57
3508 8867 3.287222 ACTGGACTCTACAGAGATGCTC 58.713 50.000 13.13 0.22 44.74 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.