Multiple sequence alignment - TraesCS2B01G089700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G089700 chr2B 100.000 5103 0 0 685 5787 50593028 50598130 0.000000e+00 9424
1 TraesCS2B01G089700 chr2B 98.571 4899 62 3 895 5787 219302771 219307667 0.000000e+00 8652
2 TraesCS2B01G089700 chr2B 100.000 227 0 0 1 227 50592344 50592570 2.490000e-113 420
3 TraesCS2B01G089700 chr2B 96.903 226 7 0 2 227 791147778 791147553 4.230000e-101 379
4 TraesCS2B01G089700 chr2B 96.460 226 8 0 2 227 778797200 778796975 1.970000e-99 374
5 TraesCS2B01G089700 chr2B 96.460 226 8 0 2 227 792923009 792923234 1.970000e-99 374
6 TraesCS2B01G089700 chr2B 96.035 227 9 0 1 227 69248353 69248579 2.550000e-98 370
7 TraesCS2B01G089700 chr2B 81.188 303 53 4 1328 1628 404572828 404573128 2.080000e-59 241
8 TraesCS2B01G089700 chr5B 98.709 5111 56 5 685 5787 633818834 633813726 0.000000e+00 9064
9 TraesCS2B01G089700 chr5B 98.418 5120 62 6 685 5787 633809435 633804318 0.000000e+00 8988
10 TraesCS2B01G089700 chr4A 98.376 5110 71 7 685 5787 605039740 605044844 0.000000e+00 8966
11 TraesCS2B01G089700 chr4A 98.362 2686 37 2 1601 4279 605057565 605054880 0.000000e+00 4710
12 TraesCS2B01G089700 chr4A 98.899 1362 13 2 4426 5787 605054869 605053510 0.000000e+00 2431
13 TraesCS2B01G089700 chr4A 97.514 925 21 2 685 1609 605058787 605057865 0.000000e+00 1580
14 TraesCS2B01G089700 chr1B 98.124 2186 37 4 707 2890 665519786 665517603 0.000000e+00 3807
15 TraesCS2B01G089700 chr1B 96.035 227 9 0 1 227 76615667 76615893 2.550000e-98 370
16 TraesCS2B01G089700 chrUn 98.793 2071 19 1 2790 4854 355817009 355819079 0.000000e+00 3681
17 TraesCS2B01G089700 chrUn 75.927 1645 325 51 2969 4566 86312730 86314350 0.000000e+00 778
18 TraesCS2B01G089700 chrUn 79.390 1082 178 31 1328 2394 86311307 86312358 0.000000e+00 721
19 TraesCS2B01G089700 chrUn 96.460 226 8 0 2 227 276820942 276820717 1.970000e-99 374
20 TraesCS2B01G089700 chr7D 96.983 1624 46 3 1280 2901 397607857 397609479 0.000000e+00 2724
21 TraesCS2B01G089700 chr7D 95.702 605 22 4 685 1288 397607228 397607829 0.000000e+00 970
22 TraesCS2B01G089700 chr7D 88.845 502 52 4 687 1186 334873838 334874337 1.070000e-171 614
23 TraesCS2B01G089700 chr6A 98.558 624 8 1 1280 1903 7098823 7099445 0.000000e+00 1101
24 TraesCS2B01G089700 chr6A 92.844 559 26 9 731 1288 7098250 7098795 0.000000e+00 798
25 TraesCS2B01G089700 chr6A 97.826 184 4 0 2540 2723 7099970 7100153 9.360000e-83 318
26 TraesCS2B01G089700 chr6A 96.000 175 7 0 2260 2434 7099443 7099617 9.490000e-73 285
27 TraesCS2B01G089700 chr3B 96.476 227 8 0 1 227 16785596 16785370 5.470000e-100 375
28 TraesCS2B01G089700 chr3B 96.460 226 8 0 2 227 172719129 172719354 1.970000e-99 374
29 TraesCS2B01G089700 chr6B 96.460 226 8 0 2 227 31933547 31933772 1.970000e-99 374
30 TraesCS2B01G089700 chr7B 96.732 153 4 1 685 837 531903248 531903097 2.680000e-63 254
31 TraesCS2B01G089700 chr1D 82.629 213 22 11 1312 1515 90447752 90447958 2.140000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G089700 chr2B 50592344 50598130 5786 False 4922.0 9424 100.000000 1 5787 2 chr2B.!!$F5 5786
1 TraesCS2B01G089700 chr2B 219302771 219307667 4896 False 8652.0 8652 98.571000 895 5787 1 chr2B.!!$F2 4892
2 TraesCS2B01G089700 chr5B 633813726 633818834 5108 True 9064.0 9064 98.709000 685 5787 1 chr5B.!!$R2 5102
3 TraesCS2B01G089700 chr5B 633804318 633809435 5117 True 8988.0 8988 98.418000 685 5787 1 chr5B.!!$R1 5102
4 TraesCS2B01G089700 chr4A 605039740 605044844 5104 False 8966.0 8966 98.376000 685 5787 1 chr4A.!!$F1 5102
5 TraesCS2B01G089700 chr4A 605053510 605058787 5277 True 2907.0 4710 98.258333 685 5787 3 chr4A.!!$R1 5102
6 TraesCS2B01G089700 chr1B 665517603 665519786 2183 True 3807.0 3807 98.124000 707 2890 1 chr1B.!!$R1 2183
7 TraesCS2B01G089700 chrUn 355817009 355819079 2070 False 3681.0 3681 98.793000 2790 4854 1 chrUn.!!$F1 2064
8 TraesCS2B01G089700 chrUn 86311307 86314350 3043 False 749.5 778 77.658500 1328 4566 2 chrUn.!!$F2 3238
9 TraesCS2B01G089700 chr7D 397607228 397609479 2251 False 1847.0 2724 96.342500 685 2901 2 chr7D.!!$F2 2216
10 TraesCS2B01G089700 chr6A 7098250 7100153 1903 False 625.5 1101 96.307000 731 2723 4 chr6A.!!$F1 1992

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.037590 AAGTGCTTGTGGCCGGAATA 59.962 50.0 5.05 0.0 40.92 1.75 F
73 74 0.037590 AGTGCTTGTGGCCGGAATAA 59.962 50.0 5.05 0.0 40.92 1.40 F
121 122 0.246757 GCGAGTTCATGTACAACGCG 60.247 55.0 22.24 18.7 46.10 6.01 F
1084 1086 0.535780 TATAGACGGTGGATCGGCGT 60.536 55.0 6.85 0.0 44.03 5.68 F
1783 2131 1.318158 CCTCCAAGCCCACAAGATGC 61.318 60.0 0.00 0.0 0.00 3.91 F
3567 4370 0.326264 GTCAGGCTTGATGTCCAGGT 59.674 55.0 0.30 0.0 35.39 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2051 2400 1.369839 CTAGTCTGAGCTCGTCGGCA 61.370 60.000 9.64 0.0 34.17 5.69 R
2273 2625 1.131303 ACCGGGGAAGAATGTGGTCA 61.131 55.000 6.32 0.0 0.00 4.02 R
2356 2708 5.687166 ACCATATGTCGGAAAAGGAAGTA 57.313 39.130 1.24 0.0 0.00 2.24 R
3188 3989 0.753867 TGGCACTACGGTTGTCTCAA 59.246 50.000 0.00 0.0 0.00 3.02 R
3676 4479 3.751175 TGGAAAAAGAATGGCAGTAGTCG 59.249 43.478 0.00 0.0 0.00 4.18 R
5258 6104 8.478775 AGTTGCTGGAGTATCATAGTATGTAA 57.521 34.615 9.94 0.0 36.25 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.081204 TGCCATTTATAATGCTTCATTATCAGT 57.919 29.630 13.45 0.78 43.36 3.41
30 31 9.918630 GCCATTTATAATGCTTCATTATCAGTT 57.081 29.630 13.45 0.00 43.36 3.16
38 39 8.922058 AATGCTTCATTATCAGTTTGATTGAC 57.078 30.769 0.00 0.00 38.26 3.18
39 40 6.855836 TGCTTCATTATCAGTTTGATTGACC 58.144 36.000 0.00 0.00 38.26 4.02
40 41 6.660521 TGCTTCATTATCAGTTTGATTGACCT 59.339 34.615 0.00 0.00 38.26 3.85
41 42 7.148188 TGCTTCATTATCAGTTTGATTGACCTC 60.148 37.037 0.00 0.00 38.26 3.85
42 43 7.066766 GCTTCATTATCAGTTTGATTGACCTCT 59.933 37.037 0.00 0.00 38.26 3.69
43 44 9.605275 CTTCATTATCAGTTTGATTGACCTCTA 57.395 33.333 0.00 0.00 38.26 2.43
49 50 8.729805 ATCAGTTTGATTGACCTCTATTTCTC 57.270 34.615 0.00 0.00 32.13 2.87
50 51 6.813649 TCAGTTTGATTGACCTCTATTTCTCG 59.186 38.462 0.00 0.00 0.00 4.04
51 52 6.591834 CAGTTTGATTGACCTCTATTTCTCGT 59.408 38.462 0.00 0.00 0.00 4.18
52 53 7.759886 CAGTTTGATTGACCTCTATTTCTCGTA 59.240 37.037 0.00 0.00 0.00 3.43
53 54 8.311836 AGTTTGATTGACCTCTATTTCTCGTAA 58.688 33.333 0.00 0.00 0.00 3.18
54 55 8.932791 GTTTGATTGACCTCTATTTCTCGTAAA 58.067 33.333 0.00 0.00 0.00 2.01
55 56 8.703604 TTGATTGACCTCTATTTCTCGTAAAG 57.296 34.615 0.00 0.00 0.00 1.85
56 57 7.837863 TGATTGACCTCTATTTCTCGTAAAGT 58.162 34.615 0.00 0.00 0.00 2.66
57 58 7.759886 TGATTGACCTCTATTTCTCGTAAAGTG 59.240 37.037 0.00 0.00 0.00 3.16
58 59 5.408356 TGACCTCTATTTCTCGTAAAGTGC 58.592 41.667 0.00 0.00 0.00 4.40
59 60 5.185249 TGACCTCTATTTCTCGTAAAGTGCT 59.815 40.000 0.00 0.00 0.00 4.40
60 61 6.038997 ACCTCTATTTCTCGTAAAGTGCTT 57.961 37.500 0.00 0.00 0.00 3.91
61 62 5.869888 ACCTCTATTTCTCGTAAAGTGCTTG 59.130 40.000 0.00 0.00 0.00 4.01
62 63 5.869888 CCTCTATTTCTCGTAAAGTGCTTGT 59.130 40.000 0.00 0.00 0.00 3.16
63 64 6.183360 CCTCTATTTCTCGTAAAGTGCTTGTG 60.183 42.308 0.00 0.00 0.00 3.33
64 65 4.749245 ATTTCTCGTAAAGTGCTTGTGG 57.251 40.909 0.00 0.00 0.00 4.17
65 66 1.508632 TCTCGTAAAGTGCTTGTGGC 58.491 50.000 0.00 0.00 42.22 5.01
66 67 0.517316 CTCGTAAAGTGCTTGTGGCC 59.483 55.000 0.00 0.00 40.92 5.36
67 68 1.206578 CGTAAAGTGCTTGTGGCCG 59.793 57.895 0.00 0.00 40.92 6.13
68 69 1.579429 GTAAAGTGCTTGTGGCCGG 59.421 57.895 0.00 0.00 40.92 6.13
69 70 0.887387 GTAAAGTGCTTGTGGCCGGA 60.887 55.000 5.05 0.00 40.92 5.14
70 71 0.179015 TAAAGTGCTTGTGGCCGGAA 60.179 50.000 5.05 0.00 40.92 4.30
71 72 0.827507 AAAGTGCTTGTGGCCGGAAT 60.828 50.000 5.05 0.00 40.92 3.01
72 73 0.037590 AAGTGCTTGTGGCCGGAATA 59.962 50.000 5.05 0.00 40.92 1.75
73 74 0.037590 AGTGCTTGTGGCCGGAATAA 59.962 50.000 5.05 0.00 40.92 1.40
74 75 0.451783 GTGCTTGTGGCCGGAATAAG 59.548 55.000 5.05 7.72 40.92 1.73
75 76 0.679640 TGCTTGTGGCCGGAATAAGG 60.680 55.000 5.05 0.00 40.92 2.69
76 77 1.384222 GCTTGTGGCCGGAATAAGGG 61.384 60.000 5.05 0.00 34.27 3.95
77 78 0.254747 CTTGTGGCCGGAATAAGGGA 59.745 55.000 5.05 0.00 0.00 4.20
78 79 0.699399 TTGTGGCCGGAATAAGGGAA 59.301 50.000 5.05 0.00 0.00 3.97
79 80 0.923358 TGTGGCCGGAATAAGGGAAT 59.077 50.000 5.05 0.00 0.00 3.01
80 81 1.318576 GTGGCCGGAATAAGGGAATG 58.681 55.000 5.05 0.00 0.00 2.67
81 82 1.133915 GTGGCCGGAATAAGGGAATGA 60.134 52.381 5.05 0.00 0.00 2.57
82 83 1.780309 TGGCCGGAATAAGGGAATGAT 59.220 47.619 5.05 0.00 0.00 2.45
83 84 2.176798 TGGCCGGAATAAGGGAATGATT 59.823 45.455 5.05 0.00 0.00 2.57
84 85 3.230976 GGCCGGAATAAGGGAATGATTT 58.769 45.455 5.05 0.00 0.00 2.17
85 86 3.255888 GGCCGGAATAAGGGAATGATTTC 59.744 47.826 5.05 0.00 0.00 2.17
86 87 4.145052 GCCGGAATAAGGGAATGATTTCT 58.855 43.478 5.05 0.00 32.16 2.52
87 88 4.022849 GCCGGAATAAGGGAATGATTTCTG 60.023 45.833 5.05 0.00 32.16 3.02
88 89 4.022849 CCGGAATAAGGGAATGATTTCTGC 60.023 45.833 0.00 0.00 32.16 4.26
89 90 4.319766 CGGAATAAGGGAATGATTTCTGCG 60.320 45.833 0.00 0.00 32.16 5.18
90 91 4.022849 GGAATAAGGGAATGATTTCTGCGG 60.023 45.833 0.00 0.00 32.16 5.69
91 92 2.806945 AAGGGAATGATTTCTGCGGA 57.193 45.000 0.00 0.00 32.16 5.54
92 93 3.303351 AAGGGAATGATTTCTGCGGAT 57.697 42.857 0.00 0.00 32.16 4.18
93 94 4.437682 AAGGGAATGATTTCTGCGGATA 57.562 40.909 0.00 0.00 32.16 2.59
94 95 3.744660 AGGGAATGATTTCTGCGGATAC 58.255 45.455 0.00 0.00 32.16 2.24
95 96 3.392616 AGGGAATGATTTCTGCGGATACT 59.607 43.478 0.00 0.00 32.16 2.12
96 97 4.593206 AGGGAATGATTTCTGCGGATACTA 59.407 41.667 0.00 0.00 32.16 1.82
97 98 5.249393 AGGGAATGATTTCTGCGGATACTAT 59.751 40.000 0.00 0.00 32.16 2.12
98 99 5.352569 GGGAATGATTTCTGCGGATACTATG 59.647 44.000 0.00 0.00 32.16 2.23
99 100 5.934625 GGAATGATTTCTGCGGATACTATGT 59.065 40.000 0.00 0.00 32.16 2.29
100 101 6.128445 GGAATGATTTCTGCGGATACTATGTG 60.128 42.308 0.00 0.00 32.16 3.21
101 102 5.276461 TGATTTCTGCGGATACTATGTGT 57.724 39.130 0.00 0.00 0.00 3.72
102 103 5.049828 TGATTTCTGCGGATACTATGTGTG 58.950 41.667 0.00 0.00 0.00 3.82
103 104 2.509052 TCTGCGGATACTATGTGTGC 57.491 50.000 0.00 0.00 0.00 4.57
104 105 1.131771 CTGCGGATACTATGTGTGCG 58.868 55.000 4.30 4.30 40.75 5.34
105 106 0.741915 TGCGGATACTATGTGTGCGA 59.258 50.000 11.70 0.00 40.32 5.10
106 107 1.269051 TGCGGATACTATGTGTGCGAG 60.269 52.381 11.70 0.00 40.32 5.03
107 108 1.269102 GCGGATACTATGTGTGCGAGT 60.269 52.381 11.70 0.00 40.32 4.18
108 109 2.798499 GCGGATACTATGTGTGCGAGTT 60.798 50.000 11.70 0.00 40.32 3.01
109 110 3.043586 CGGATACTATGTGTGCGAGTTC 58.956 50.000 2.70 0.00 40.32 3.01
110 111 3.488553 CGGATACTATGTGTGCGAGTTCA 60.489 47.826 2.70 0.00 40.32 3.18
111 112 4.621991 GGATACTATGTGTGCGAGTTCAT 58.378 43.478 0.00 0.00 0.00 2.57
112 113 4.445718 GGATACTATGTGTGCGAGTTCATG 59.554 45.833 0.00 0.00 0.00 3.07
113 114 3.319137 ACTATGTGTGCGAGTTCATGT 57.681 42.857 0.00 0.00 0.00 3.21
114 115 4.450082 ACTATGTGTGCGAGTTCATGTA 57.550 40.909 0.00 0.00 0.00 2.29
115 116 4.174009 ACTATGTGTGCGAGTTCATGTAC 58.826 43.478 0.00 0.00 0.00 2.90
116 117 2.517650 TGTGTGCGAGTTCATGTACA 57.482 45.000 0.00 0.00 0.00 2.90
117 118 2.827652 TGTGTGCGAGTTCATGTACAA 58.172 42.857 0.00 0.00 32.53 2.41
118 119 2.542178 TGTGTGCGAGTTCATGTACAAC 59.458 45.455 0.00 0.00 32.53 3.32
119 120 1.790043 TGTGCGAGTTCATGTACAACG 59.210 47.619 0.00 14.08 0.00 4.10
120 121 0.787787 TGCGAGTTCATGTACAACGC 59.212 50.000 26.35 26.35 42.10 4.84
121 122 0.246757 GCGAGTTCATGTACAACGCG 60.247 55.000 22.24 18.70 46.10 6.01
122 123 1.333115 CGAGTTCATGTACAACGCGA 58.667 50.000 15.93 0.83 46.21 5.87
123 124 1.057285 CGAGTTCATGTACAACGCGAC 59.943 52.381 15.93 0.00 46.21 5.19
124 125 2.325761 GAGTTCATGTACAACGCGACT 58.674 47.619 15.93 0.03 0.00 4.18
125 126 2.729882 GAGTTCATGTACAACGCGACTT 59.270 45.455 15.93 0.00 0.00 3.01
126 127 3.128349 AGTTCATGTACAACGCGACTTT 58.872 40.909 15.93 0.00 0.00 2.66
127 128 3.059868 AGTTCATGTACAACGCGACTTTG 60.060 43.478 15.93 10.13 0.00 2.77
128 129 2.745102 TCATGTACAACGCGACTTTGA 58.255 42.857 15.93 5.49 0.00 2.69
129 130 3.124560 TCATGTACAACGCGACTTTGAA 58.875 40.909 15.93 0.00 0.00 2.69
130 131 3.556365 TCATGTACAACGCGACTTTGAAA 59.444 39.130 15.93 0.00 0.00 2.69
131 132 4.034163 TCATGTACAACGCGACTTTGAAAA 59.966 37.500 15.93 0.00 0.00 2.29
132 133 4.337985 TGTACAACGCGACTTTGAAAAA 57.662 36.364 15.93 0.00 0.00 1.94
133 134 4.911053 TGTACAACGCGACTTTGAAAAAT 58.089 34.783 15.93 0.00 0.00 1.82
134 135 6.045698 TGTACAACGCGACTTTGAAAAATA 57.954 33.333 15.93 0.00 0.00 1.40
135 136 6.484540 TGTACAACGCGACTTTGAAAAATAA 58.515 32.000 15.93 0.00 0.00 1.40
136 137 6.629649 TGTACAACGCGACTTTGAAAAATAAG 59.370 34.615 15.93 0.00 0.00 1.73
137 138 4.439776 ACAACGCGACTTTGAAAAATAAGC 59.560 37.500 15.93 0.00 0.00 3.09
138 139 3.845857 CGCGACTTTGAAAAATAAGCG 57.154 42.857 0.00 0.00 39.14 4.68
139 140 2.588106 CGCGACTTTGAAAAATAAGCGG 59.412 45.455 0.00 0.00 41.16 5.52
140 141 2.914838 GCGACTTTGAAAAATAAGCGGG 59.085 45.455 0.00 0.00 0.00 6.13
141 142 3.498082 CGACTTTGAAAAATAAGCGGGG 58.502 45.455 0.00 0.00 0.00 5.73
142 143 3.250744 GACTTTGAAAAATAAGCGGGGC 58.749 45.455 0.00 0.00 0.00 5.80
143 144 2.897326 ACTTTGAAAAATAAGCGGGGCT 59.103 40.909 0.00 0.00 42.56 5.19
144 145 4.083565 ACTTTGAAAAATAAGCGGGGCTA 58.916 39.130 0.00 0.00 38.25 3.93
145 146 4.082408 ACTTTGAAAAATAAGCGGGGCTAC 60.082 41.667 0.00 0.00 38.25 3.58
146 147 3.359695 TGAAAAATAAGCGGGGCTACT 57.640 42.857 0.00 0.00 38.25 2.57
147 148 3.692690 TGAAAAATAAGCGGGGCTACTT 58.307 40.909 0.00 0.00 38.25 2.24
148 149 4.083565 TGAAAAATAAGCGGGGCTACTTT 58.916 39.130 0.00 0.00 38.25 2.66
149 150 5.254901 TGAAAAATAAGCGGGGCTACTTTA 58.745 37.500 0.00 0.00 38.25 1.85
150 151 5.711036 TGAAAAATAAGCGGGGCTACTTTAA 59.289 36.000 0.00 0.00 38.25 1.52
151 152 6.208994 TGAAAAATAAGCGGGGCTACTTTAAA 59.791 34.615 0.00 0.00 38.25 1.52
152 153 6.593268 AAAATAAGCGGGGCTACTTTAAAA 57.407 33.333 0.00 0.00 38.25 1.52
153 154 5.830000 AATAAGCGGGGCTACTTTAAAAG 57.170 39.130 0.00 0.00 38.25 2.27
154 155 3.428413 AAGCGGGGCTACTTTAAAAGA 57.572 42.857 0.00 0.00 38.25 2.52
155 156 2.708051 AGCGGGGCTACTTTAAAAGAC 58.292 47.619 0.00 0.00 36.99 3.01
156 157 2.039348 AGCGGGGCTACTTTAAAAGACA 59.961 45.455 0.00 0.00 36.99 3.41
157 158 2.815503 GCGGGGCTACTTTAAAAGACAA 59.184 45.455 0.00 0.00 0.00 3.18
158 159 3.442625 GCGGGGCTACTTTAAAAGACAAT 59.557 43.478 0.00 0.00 0.00 2.71
159 160 4.637091 GCGGGGCTACTTTAAAAGACAATA 59.363 41.667 0.00 0.00 0.00 1.90
160 161 5.298527 GCGGGGCTACTTTAAAAGACAATAT 59.701 40.000 0.00 0.00 0.00 1.28
161 162 6.725246 CGGGGCTACTTTAAAAGACAATATG 58.275 40.000 0.00 0.00 0.00 1.78
162 163 6.540914 CGGGGCTACTTTAAAAGACAATATGA 59.459 38.462 0.00 0.00 0.00 2.15
163 164 7.066525 CGGGGCTACTTTAAAAGACAATATGAA 59.933 37.037 0.00 0.00 0.00 2.57
164 165 8.406297 GGGGCTACTTTAAAAGACAATATGAAG 58.594 37.037 0.00 0.00 0.00 3.02
165 166 8.957466 GGGCTACTTTAAAAGACAATATGAAGT 58.043 33.333 0.00 0.00 0.00 3.01
166 167 9.774742 GGCTACTTTAAAAGACAATATGAAGTG 57.225 33.333 0.00 0.00 0.00 3.16
167 168 9.278734 GCTACTTTAAAAGACAATATGAAGTGC 57.721 33.333 0.00 0.00 0.00 4.40
168 169 9.478019 CTACTTTAAAAGACAATATGAAGTGCG 57.522 33.333 0.00 0.00 0.00 5.34
169 170 7.871853 ACTTTAAAAGACAATATGAAGTGCGT 58.128 30.769 0.00 0.00 0.00 5.24
170 171 8.995220 ACTTTAAAAGACAATATGAAGTGCGTA 58.005 29.630 0.00 0.00 0.00 4.42
171 172 9.820229 CTTTAAAAGACAATATGAAGTGCGTAA 57.180 29.630 0.00 0.00 0.00 3.18
172 173 9.820229 TTTAAAAGACAATATGAAGTGCGTAAG 57.180 29.630 0.00 0.00 43.44 2.34
173 174 7.435068 AAAAGACAATATGAAGTGCGTAAGT 57.565 32.000 0.00 0.00 41.68 2.24
174 175 8.542497 AAAAGACAATATGAAGTGCGTAAGTA 57.458 30.769 0.00 0.00 41.68 2.24
175 176 8.542497 AAAGACAATATGAAGTGCGTAAGTAA 57.458 30.769 0.00 0.00 41.68 2.24
176 177 8.718102 AAGACAATATGAAGTGCGTAAGTAAT 57.282 30.769 0.00 0.00 41.68 1.89
177 178 9.811995 AAGACAATATGAAGTGCGTAAGTAATA 57.188 29.630 0.00 0.00 41.68 0.98
178 179 9.811995 AGACAATATGAAGTGCGTAAGTAATAA 57.188 29.630 0.00 0.00 41.68 1.40
186 187 9.589111 TGAAGTGCGTAAGTAATAATATTCACA 57.411 29.630 0.00 0.00 41.68 3.58
214 215 9.579768 TTTCATTTTATTACACCATCATTTCCG 57.420 29.630 0.00 0.00 0.00 4.30
215 216 8.287439 TCATTTTATTACACCATCATTTCCGT 57.713 30.769 0.00 0.00 0.00 4.69
216 217 8.744652 TCATTTTATTACACCATCATTTCCGTT 58.255 29.630 0.00 0.00 0.00 4.44
217 218 8.806634 CATTTTATTACACCATCATTTCCGTTG 58.193 33.333 0.00 0.00 0.00 4.10
218 219 7.689446 TTTATTACACCATCATTTCCGTTGA 57.311 32.000 0.00 0.00 0.00 3.18
219 220 5.818136 ATTACACCATCATTTCCGTTGAG 57.182 39.130 0.00 0.00 0.00 3.02
220 221 3.140325 ACACCATCATTTCCGTTGAGT 57.860 42.857 0.00 0.00 0.00 3.41
221 222 3.486383 ACACCATCATTTCCGTTGAGTT 58.514 40.909 0.00 0.00 0.00 3.01
222 223 3.888930 ACACCATCATTTCCGTTGAGTTT 59.111 39.130 0.00 0.00 0.00 2.66
223 224 4.023193 ACACCATCATTTCCGTTGAGTTTC 60.023 41.667 0.00 0.00 0.00 2.78
224 225 4.023279 CACCATCATTTCCGTTGAGTTTCA 60.023 41.667 0.00 0.00 0.00 2.69
225 226 4.766891 ACCATCATTTCCGTTGAGTTTCAT 59.233 37.500 0.00 0.00 0.00 2.57
226 227 5.243730 ACCATCATTTCCGTTGAGTTTCATT 59.756 36.000 0.00 0.00 0.00 2.57
813 815 0.759346 CGGGTTAGGCTAGCTTCCAT 59.241 55.000 15.72 0.00 0.00 3.41
1014 1016 8.761575 ATATTCTTGTTACGAACTAAAACGGA 57.238 30.769 0.00 0.00 0.00 4.69
1084 1086 0.535780 TATAGACGGTGGATCGGCGT 60.536 55.000 6.85 0.00 44.03 5.68
1499 1538 5.385198 AGGAAAGCATGGAAAGACAAACTA 58.615 37.500 0.00 0.00 0.00 2.24
1783 2131 1.318158 CCTCCAAGCCCACAAGATGC 61.318 60.000 0.00 0.00 0.00 3.91
2051 2400 3.069443 CCTACAACTGGGCACAATTTGTT 59.931 43.478 18.16 3.34 35.57 2.83
2400 2952 7.315142 TGGTAAACTAAAGGTACATCGTACTG 58.685 38.462 4.43 0.00 0.00 2.74
2647 3447 9.429359 TCTCCTTACATTATACTACGTACTAGC 57.571 37.037 0.00 0.00 0.00 3.42
3172 3973 2.420022 GTCACTGCAAACTTATCGGCAT 59.580 45.455 0.00 0.00 35.45 4.40
3188 3989 2.094675 GGCATAGTTTGACATGGCAGT 58.905 47.619 0.00 0.00 44.67 4.40
3244 4045 2.886523 CCTCAACAAGCTCCACAATCAA 59.113 45.455 0.00 0.00 0.00 2.57
3507 4310 6.697892 CCAAAACGAGTAATAAAACCAAGCAA 59.302 34.615 0.00 0.00 0.00 3.91
3567 4370 0.326264 GTCAGGCTTGATGTCCAGGT 59.674 55.000 0.30 0.00 35.39 4.00
3676 4479 6.270815 TGTCCGAAGTATTATAACTCACTGC 58.729 40.000 0.00 0.00 0.00 4.40
4082 4892 2.239654 CTGGTAGATTCACCACCCATGT 59.760 50.000 4.48 0.00 43.76 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.081204 ACTGATAATGAAGCATTATAAATGGCA 57.919 29.630 11.44 0.00 44.11 4.92
4 5 9.918630 AACTGATAATGAAGCATTATAAATGGC 57.081 29.630 11.44 0.00 44.11 4.40
13 14 7.977853 GGTCAATCAAACTGATAATGAAGCATT 59.022 33.333 0.00 0.00 35.76 3.56
14 15 7.341256 AGGTCAATCAAACTGATAATGAAGCAT 59.659 33.333 0.00 0.00 35.76 3.79
15 16 6.660521 AGGTCAATCAAACTGATAATGAAGCA 59.339 34.615 0.00 0.00 35.76 3.91
16 17 7.066766 AGAGGTCAATCAAACTGATAATGAAGC 59.933 37.037 0.00 0.00 35.76 3.86
17 18 8.503458 AGAGGTCAATCAAACTGATAATGAAG 57.497 34.615 0.00 0.00 35.76 3.02
23 24 9.823647 GAGAAATAGAGGTCAATCAAACTGATA 57.176 33.333 0.00 0.00 35.76 2.15
24 25 7.493971 CGAGAAATAGAGGTCAATCAAACTGAT 59.506 37.037 0.00 0.00 39.09 2.90
25 26 6.813649 CGAGAAATAGAGGTCAATCAAACTGA 59.186 38.462 0.00 0.00 0.00 3.41
26 27 6.591834 ACGAGAAATAGAGGTCAATCAAACTG 59.408 38.462 0.00 0.00 0.00 3.16
27 28 6.702329 ACGAGAAATAGAGGTCAATCAAACT 58.298 36.000 0.00 0.00 0.00 2.66
28 29 6.969828 ACGAGAAATAGAGGTCAATCAAAC 57.030 37.500 0.00 0.00 0.00 2.93
29 30 9.151471 CTTTACGAGAAATAGAGGTCAATCAAA 57.849 33.333 0.00 0.00 0.00 2.69
30 31 8.311836 ACTTTACGAGAAATAGAGGTCAATCAA 58.688 33.333 0.00 0.00 0.00 2.57
31 32 7.759886 CACTTTACGAGAAATAGAGGTCAATCA 59.240 37.037 0.00 0.00 0.00 2.57
32 33 7.254151 GCACTTTACGAGAAATAGAGGTCAATC 60.254 40.741 0.00 0.00 0.00 2.67
33 34 6.535508 GCACTTTACGAGAAATAGAGGTCAAT 59.464 38.462 0.00 0.00 0.00 2.57
34 35 5.867716 GCACTTTACGAGAAATAGAGGTCAA 59.132 40.000 0.00 0.00 0.00 3.18
35 36 5.185249 AGCACTTTACGAGAAATAGAGGTCA 59.815 40.000 0.00 0.00 0.00 4.02
36 37 5.652518 AGCACTTTACGAGAAATAGAGGTC 58.347 41.667 0.00 0.00 0.00 3.85
37 38 5.662674 AGCACTTTACGAGAAATAGAGGT 57.337 39.130 0.00 0.00 0.00 3.85
38 39 5.869888 ACAAGCACTTTACGAGAAATAGAGG 59.130 40.000 0.00 0.00 0.00 3.69
39 40 6.183360 CCACAAGCACTTTACGAGAAATAGAG 60.183 42.308 0.00 0.00 0.00 2.43
40 41 5.637810 CCACAAGCACTTTACGAGAAATAGA 59.362 40.000 0.00 0.00 0.00 1.98
41 42 5.671329 GCCACAAGCACTTTACGAGAAATAG 60.671 44.000 0.00 0.00 42.97 1.73
42 43 4.153475 GCCACAAGCACTTTACGAGAAATA 59.847 41.667 0.00 0.00 42.97 1.40
43 44 3.058224 GCCACAAGCACTTTACGAGAAAT 60.058 43.478 0.00 0.00 42.97 2.17
44 45 2.289547 GCCACAAGCACTTTACGAGAAA 59.710 45.455 0.00 0.00 42.97 2.52
45 46 1.871039 GCCACAAGCACTTTACGAGAA 59.129 47.619 0.00 0.00 42.97 2.87
46 47 1.508632 GCCACAAGCACTTTACGAGA 58.491 50.000 0.00 0.00 42.97 4.04
47 48 0.517316 GGCCACAAGCACTTTACGAG 59.483 55.000 0.00 0.00 46.50 4.18
48 49 1.225376 CGGCCACAAGCACTTTACGA 61.225 55.000 2.24 0.00 46.50 3.43
49 50 1.206578 CGGCCACAAGCACTTTACG 59.793 57.895 2.24 0.00 46.50 3.18
50 51 0.887387 TCCGGCCACAAGCACTTTAC 60.887 55.000 2.24 0.00 46.50 2.01
51 52 0.179015 TTCCGGCCACAAGCACTTTA 60.179 50.000 2.24 0.00 46.50 1.85
52 53 0.827507 ATTCCGGCCACAAGCACTTT 60.828 50.000 2.24 0.00 46.50 2.66
53 54 0.037590 TATTCCGGCCACAAGCACTT 59.962 50.000 2.24 0.00 46.50 3.16
54 55 0.037590 TTATTCCGGCCACAAGCACT 59.962 50.000 2.24 0.00 46.50 4.40
55 56 0.451783 CTTATTCCGGCCACAAGCAC 59.548 55.000 2.24 0.00 46.50 4.40
56 57 0.679640 CCTTATTCCGGCCACAAGCA 60.680 55.000 2.24 0.00 46.50 3.91
57 58 1.384222 CCCTTATTCCGGCCACAAGC 61.384 60.000 2.24 0.00 42.60 4.01
58 59 0.254747 TCCCTTATTCCGGCCACAAG 59.745 55.000 2.24 0.00 0.00 3.16
59 60 0.699399 TTCCCTTATTCCGGCCACAA 59.301 50.000 2.24 0.00 0.00 3.33
60 61 0.923358 ATTCCCTTATTCCGGCCACA 59.077 50.000 2.24 0.00 0.00 4.17
61 62 1.133915 TCATTCCCTTATTCCGGCCAC 60.134 52.381 2.24 0.00 0.00 5.01
62 63 1.217916 TCATTCCCTTATTCCGGCCA 58.782 50.000 2.24 0.00 0.00 5.36
63 64 2.586648 ATCATTCCCTTATTCCGGCC 57.413 50.000 0.00 0.00 0.00 6.13
64 65 4.022849 CAGAAATCATTCCCTTATTCCGGC 60.023 45.833 0.00 0.00 36.12 6.13
65 66 4.022849 GCAGAAATCATTCCCTTATTCCGG 60.023 45.833 0.00 0.00 36.12 5.14
66 67 4.319766 CGCAGAAATCATTCCCTTATTCCG 60.320 45.833 0.00 0.00 36.12 4.30
67 68 4.022849 CCGCAGAAATCATTCCCTTATTCC 60.023 45.833 0.00 0.00 36.12 3.01
68 69 4.821805 TCCGCAGAAATCATTCCCTTATTC 59.178 41.667 0.00 0.00 36.12 1.75
69 70 4.792068 TCCGCAGAAATCATTCCCTTATT 58.208 39.130 0.00 0.00 36.12 1.40
70 71 4.437682 TCCGCAGAAATCATTCCCTTAT 57.562 40.909 0.00 0.00 36.12 1.73
71 72 3.924114 TCCGCAGAAATCATTCCCTTA 57.076 42.857 0.00 0.00 36.12 2.69
72 73 2.806945 TCCGCAGAAATCATTCCCTT 57.193 45.000 0.00 0.00 36.12 3.95
73 74 3.392616 AGTATCCGCAGAAATCATTCCCT 59.607 43.478 0.00 0.00 36.12 4.20
74 75 3.744660 AGTATCCGCAGAAATCATTCCC 58.255 45.455 0.00 0.00 36.12 3.97
75 76 5.934625 ACATAGTATCCGCAGAAATCATTCC 59.065 40.000 0.00 0.00 36.12 3.01
76 77 6.425114 ACACATAGTATCCGCAGAAATCATTC 59.575 38.462 0.00 0.00 35.70 2.67
77 78 6.203530 CACACATAGTATCCGCAGAAATCATT 59.796 38.462 0.00 0.00 0.00 2.57
78 79 5.698089 CACACATAGTATCCGCAGAAATCAT 59.302 40.000 0.00 0.00 0.00 2.45
79 80 5.049828 CACACATAGTATCCGCAGAAATCA 58.950 41.667 0.00 0.00 0.00 2.57
80 81 4.084328 GCACACATAGTATCCGCAGAAATC 60.084 45.833 0.00 0.00 0.00 2.17
81 82 3.809832 GCACACATAGTATCCGCAGAAAT 59.190 43.478 0.00 0.00 0.00 2.17
82 83 3.194861 GCACACATAGTATCCGCAGAAA 58.805 45.455 0.00 0.00 0.00 2.52
83 84 2.798145 CGCACACATAGTATCCGCAGAA 60.798 50.000 0.00 0.00 0.00 3.02
84 85 1.269051 CGCACACATAGTATCCGCAGA 60.269 52.381 0.00 0.00 0.00 4.26
85 86 1.131771 CGCACACATAGTATCCGCAG 58.868 55.000 0.00 0.00 0.00 5.18
86 87 0.741915 TCGCACACATAGTATCCGCA 59.258 50.000 0.00 0.00 0.00 5.69
87 88 1.269102 ACTCGCACACATAGTATCCGC 60.269 52.381 0.00 0.00 0.00 5.54
88 89 2.776312 ACTCGCACACATAGTATCCG 57.224 50.000 0.00 0.00 0.00 4.18
89 90 4.041740 TGAACTCGCACACATAGTATCC 57.958 45.455 0.00 0.00 0.00 2.59
90 91 5.043903 ACATGAACTCGCACACATAGTATC 58.956 41.667 0.00 0.00 0.00 2.24
91 92 5.011090 ACATGAACTCGCACACATAGTAT 57.989 39.130 0.00 0.00 0.00 2.12
92 93 4.450082 ACATGAACTCGCACACATAGTA 57.550 40.909 0.00 0.00 0.00 1.82
93 94 3.319137 ACATGAACTCGCACACATAGT 57.681 42.857 0.00 0.00 0.00 2.12
94 95 4.173256 TGTACATGAACTCGCACACATAG 58.827 43.478 0.00 0.00 0.00 2.23
95 96 4.181309 TGTACATGAACTCGCACACATA 57.819 40.909 0.00 0.00 0.00 2.29
96 97 3.038788 TGTACATGAACTCGCACACAT 57.961 42.857 0.00 0.00 0.00 3.21
97 98 2.517650 TGTACATGAACTCGCACACA 57.482 45.000 0.00 0.00 0.00 3.72
98 99 2.409752 CGTTGTACATGAACTCGCACAC 60.410 50.000 0.00 0.00 0.00 3.82
99 100 1.790043 CGTTGTACATGAACTCGCACA 59.210 47.619 0.00 0.00 0.00 4.57
100 101 1.461888 GCGTTGTACATGAACTCGCAC 60.462 52.381 0.00 0.00 40.34 5.34
101 102 0.787787 GCGTTGTACATGAACTCGCA 59.212 50.000 0.00 0.00 40.34 5.10
102 103 0.246757 CGCGTTGTACATGAACTCGC 60.247 55.000 0.00 8.21 38.74 5.03
103 104 1.057285 GTCGCGTTGTACATGAACTCG 59.943 52.381 5.77 0.35 33.82 4.18
104 105 2.325761 AGTCGCGTTGTACATGAACTC 58.674 47.619 5.77 0.00 0.00 3.01
105 106 2.433868 AGTCGCGTTGTACATGAACT 57.566 45.000 5.77 0.00 0.00 3.01
106 107 3.060138 TCAAAGTCGCGTTGTACATGAAC 60.060 43.478 5.77 0.00 0.00 3.18
107 108 3.124560 TCAAAGTCGCGTTGTACATGAA 58.875 40.909 5.77 0.00 0.00 2.57
108 109 2.745102 TCAAAGTCGCGTTGTACATGA 58.255 42.857 5.77 3.15 0.00 3.07
109 110 3.513462 TTCAAAGTCGCGTTGTACATG 57.487 42.857 5.77 0.63 0.00 3.21
110 111 4.539509 TTTTCAAAGTCGCGTTGTACAT 57.460 36.364 5.77 0.00 0.00 2.29
111 112 4.337985 TTTTTCAAAGTCGCGTTGTACA 57.662 36.364 5.77 0.00 0.00 2.90
112 113 6.397171 GCTTATTTTTCAAAGTCGCGTTGTAC 60.397 38.462 5.77 0.00 0.00 2.90
113 114 5.622041 GCTTATTTTTCAAAGTCGCGTTGTA 59.378 36.000 5.77 0.00 0.00 2.41
114 115 4.439776 GCTTATTTTTCAAAGTCGCGTTGT 59.560 37.500 5.77 0.00 0.00 3.32
115 116 4.429812 CGCTTATTTTTCAAAGTCGCGTTG 60.430 41.667 5.77 3.42 34.13 4.10
116 117 3.662186 CGCTTATTTTTCAAAGTCGCGTT 59.338 39.130 5.77 0.00 34.13 4.84
117 118 3.223157 CGCTTATTTTTCAAAGTCGCGT 58.777 40.909 5.77 0.00 34.13 6.01
118 119 2.588106 CCGCTTATTTTTCAAAGTCGCG 59.412 45.455 0.00 0.00 38.01 5.87
119 120 2.914838 CCCGCTTATTTTTCAAAGTCGC 59.085 45.455 0.00 0.00 0.00 5.19
120 121 3.498082 CCCCGCTTATTTTTCAAAGTCG 58.502 45.455 0.00 0.00 0.00 4.18
121 122 3.056821 AGCCCCGCTTATTTTTCAAAGTC 60.057 43.478 0.00 0.00 33.89 3.01
122 123 2.897326 AGCCCCGCTTATTTTTCAAAGT 59.103 40.909 0.00 0.00 33.89 2.66
123 124 3.592898 AGCCCCGCTTATTTTTCAAAG 57.407 42.857 0.00 0.00 33.89 2.77
124 125 4.083565 AGTAGCCCCGCTTATTTTTCAAA 58.916 39.130 0.00 0.00 40.44 2.69
125 126 3.692690 AGTAGCCCCGCTTATTTTTCAA 58.307 40.909 0.00 0.00 40.44 2.69
126 127 3.359695 AGTAGCCCCGCTTATTTTTCA 57.640 42.857 0.00 0.00 40.44 2.69
127 128 4.713824 AAAGTAGCCCCGCTTATTTTTC 57.286 40.909 0.00 0.00 40.44 2.29
128 129 6.593268 TTTAAAGTAGCCCCGCTTATTTTT 57.407 33.333 0.00 0.00 40.44 1.94
129 130 6.434965 TCTTTTAAAGTAGCCCCGCTTATTTT 59.565 34.615 4.53 0.00 40.44 1.82
130 131 5.947566 TCTTTTAAAGTAGCCCCGCTTATTT 59.052 36.000 4.53 0.00 40.44 1.40
131 132 5.356190 GTCTTTTAAAGTAGCCCCGCTTATT 59.644 40.000 4.53 0.00 40.44 1.40
132 133 4.880120 GTCTTTTAAAGTAGCCCCGCTTAT 59.120 41.667 4.53 0.00 40.44 1.73
133 134 4.256110 GTCTTTTAAAGTAGCCCCGCTTA 58.744 43.478 4.53 0.00 40.44 3.09
134 135 3.079578 GTCTTTTAAAGTAGCCCCGCTT 58.920 45.455 4.53 0.00 40.44 4.68
135 136 2.039348 TGTCTTTTAAAGTAGCCCCGCT 59.961 45.455 4.53 0.00 43.41 5.52
136 137 2.429478 TGTCTTTTAAAGTAGCCCCGC 58.571 47.619 4.53 0.00 0.00 6.13
137 138 6.540914 TCATATTGTCTTTTAAAGTAGCCCCG 59.459 38.462 4.53 0.00 0.00 5.73
138 139 7.875327 TCATATTGTCTTTTAAAGTAGCCCC 57.125 36.000 4.53 0.00 0.00 5.80
139 140 8.957466 ACTTCATATTGTCTTTTAAAGTAGCCC 58.043 33.333 4.53 0.00 0.00 5.19
140 141 9.774742 CACTTCATATTGTCTTTTAAAGTAGCC 57.225 33.333 4.53 0.00 0.00 3.93
141 142 9.278734 GCACTTCATATTGTCTTTTAAAGTAGC 57.721 33.333 4.53 0.00 0.00 3.58
142 143 9.478019 CGCACTTCATATTGTCTTTTAAAGTAG 57.522 33.333 4.53 0.00 0.00 2.57
143 144 8.995220 ACGCACTTCATATTGTCTTTTAAAGTA 58.005 29.630 4.53 0.00 0.00 2.24
144 145 7.871853 ACGCACTTCATATTGTCTTTTAAAGT 58.128 30.769 4.53 0.00 0.00 2.66
145 146 9.820229 TTACGCACTTCATATTGTCTTTTAAAG 57.180 29.630 0.00 0.00 0.00 1.85
146 147 9.820229 CTTACGCACTTCATATTGTCTTTTAAA 57.180 29.630 0.00 0.00 0.00 1.52
147 148 8.995220 ACTTACGCACTTCATATTGTCTTTTAA 58.005 29.630 0.00 0.00 0.00 1.52
148 149 8.542497 ACTTACGCACTTCATATTGTCTTTTA 57.458 30.769 0.00 0.00 0.00 1.52
149 150 7.435068 ACTTACGCACTTCATATTGTCTTTT 57.565 32.000 0.00 0.00 0.00 2.27
150 151 8.542497 TTACTTACGCACTTCATATTGTCTTT 57.458 30.769 0.00 0.00 0.00 2.52
151 152 8.718102 ATTACTTACGCACTTCATATTGTCTT 57.282 30.769 0.00 0.00 0.00 3.01
152 153 9.811995 TTATTACTTACGCACTTCATATTGTCT 57.188 29.630 0.00 0.00 0.00 3.41
160 161 9.589111 TGTGAATATTATTACTTACGCACTTCA 57.411 29.630 0.00 0.00 0.00 3.02
188 189 9.579768 CGGAAATGATGGTGTAATAAAATGAAA 57.420 29.630 0.00 0.00 0.00 2.69
189 190 8.744652 ACGGAAATGATGGTGTAATAAAATGAA 58.255 29.630 0.00 0.00 0.00 2.57
190 191 8.287439 ACGGAAATGATGGTGTAATAAAATGA 57.713 30.769 0.00 0.00 0.00 2.57
191 192 8.806634 CAACGGAAATGATGGTGTAATAAAATG 58.193 33.333 0.00 0.00 0.00 2.32
192 193 8.744652 TCAACGGAAATGATGGTGTAATAAAAT 58.255 29.630 0.00 0.00 0.00 1.82
193 194 8.112016 TCAACGGAAATGATGGTGTAATAAAA 57.888 30.769 0.00 0.00 0.00 1.52
194 195 7.392113 ACTCAACGGAAATGATGGTGTAATAAA 59.608 33.333 0.00 0.00 0.00 1.40
195 196 6.882140 ACTCAACGGAAATGATGGTGTAATAA 59.118 34.615 0.00 0.00 0.00 1.40
196 197 6.411376 ACTCAACGGAAATGATGGTGTAATA 58.589 36.000 0.00 0.00 0.00 0.98
197 198 5.253330 ACTCAACGGAAATGATGGTGTAAT 58.747 37.500 0.00 0.00 0.00 1.89
198 199 4.647611 ACTCAACGGAAATGATGGTGTAA 58.352 39.130 0.00 0.00 0.00 2.41
199 200 4.280436 ACTCAACGGAAATGATGGTGTA 57.720 40.909 0.00 0.00 0.00 2.90
200 201 3.140325 ACTCAACGGAAATGATGGTGT 57.860 42.857 0.00 0.00 0.00 4.16
201 202 4.023279 TGAAACTCAACGGAAATGATGGTG 60.023 41.667 0.00 0.00 0.00 4.17
202 203 4.141287 TGAAACTCAACGGAAATGATGGT 58.859 39.130 0.00 0.00 0.00 3.55
203 204 4.764679 TGAAACTCAACGGAAATGATGG 57.235 40.909 0.00 0.00 0.00 3.51
769 771 5.843673 AAGATTCTGTAGCGATCTGAGAA 57.156 39.130 0.00 0.00 31.12 2.87
813 815 8.680039 AATAATTAATAATCAAACGGGTCGGA 57.320 30.769 0.00 0.00 0.00 4.55
922 924 4.883083 AGTATCCGGATAAGTACGTACGA 58.117 43.478 25.60 12.38 0.00 3.43
1012 1014 2.095461 GGAGGTCCAGCAAAAAGATCC 58.905 52.381 0.00 0.00 35.64 3.36
1014 1016 1.614317 CGGGAGGTCCAGCAAAAAGAT 60.614 52.381 0.00 0.00 37.91 2.40
1066 1068 1.389609 AACGCCGATCCACCGTCTAT 61.390 55.000 0.00 0.00 33.59 1.98
1499 1538 1.834263 GAAGGAGCACACCTGGAGTAT 59.166 52.381 0.00 0.00 40.49 2.12
1783 2131 9.079833 CACAAAAGTATGCTTTCATAGAAATGG 57.920 33.333 9.35 0.00 43.52 3.16
2015 2364 4.940046 CAGTTGTAGGCATGAATGTTCTCT 59.060 41.667 0.00 0.00 0.00 3.10
2051 2400 1.369839 CTAGTCTGAGCTCGTCGGCA 61.370 60.000 9.64 0.00 34.17 5.69
2273 2625 1.131303 ACCGGGGAAGAATGTGGTCA 61.131 55.000 6.32 0.00 0.00 4.02
2356 2708 5.687166 ACCATATGTCGGAAAAGGAAGTA 57.313 39.130 1.24 0.00 0.00 2.24
2400 2952 5.010719 TGCTAGGTTGTAGTATGGAGTATGC 59.989 44.000 0.00 0.00 0.00 3.14
3172 3973 4.065088 GTCTCAACTGCCATGTCAAACTA 58.935 43.478 0.00 0.00 0.00 2.24
3188 3989 0.753867 TGGCACTACGGTTGTCTCAA 59.246 50.000 0.00 0.00 0.00 3.02
3676 4479 3.751175 TGGAAAAAGAATGGCAGTAGTCG 59.249 43.478 0.00 0.00 0.00 4.18
4082 4892 6.728411 TGGAGTATCTAGGTTGTTAGTGAGA 58.272 40.000 0.00 0.00 33.73 3.27
4396 5240 8.723311 GTGTGTACTAAAAACATGCATAACCTA 58.277 33.333 0.00 0.00 0.00 3.08
5258 6104 8.478775 AGTTGCTGGAGTATCATAGTATGTAA 57.521 34.615 9.94 0.00 36.25 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.