Multiple sequence alignment - TraesCS2B01G089600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G089600 chr2B 100.000 5736 0 0 1 5736 50490323 50484588 0.000000e+00 10593.0
1 TraesCS2B01G089600 chr2B 94.145 2391 104 8 3366 5736 43802497 43804871 0.000000e+00 3607.0
2 TraesCS2B01G089600 chr2B 89.121 1103 96 12 2250 3343 50627225 50628312 0.000000e+00 1351.0
3 TraesCS2B01G089600 chr2B 91.591 880 54 10 2478 3343 43801501 43802374 0.000000e+00 1197.0
4 TraesCS2B01G089600 chr2B 84.370 1158 121 19 4252 5386 50629325 50630445 0.000000e+00 1081.0
5 TraesCS2B01G089600 chr2B 89.026 893 58 18 3366 4254 50628435 50629291 0.000000e+00 1070.0
6 TraesCS2B01G089600 chr2B 84.252 635 56 22 1417 2020 43800777 43801398 3.850000e-161 579.0
7 TraesCS2B01G089600 chr2B 79.371 795 101 33 1068 1836 50626282 50627039 8.580000e-138 501.0
8 TraesCS2B01G089600 chr2B 84.235 425 45 17 985 1398 43799946 43800359 1.500000e-105 394.0
9 TraesCS2B01G089600 chr2B 94.979 239 10 2 1 238 480392118 480392355 1.950000e-99 374.0
10 TraesCS2B01G089600 chr2B 86.979 192 14 2 2250 2440 43801314 43801495 7.530000e-49 206.0
11 TraesCS2B01G089600 chr2B 77.143 245 50 4 4641 4880 773734279 773734036 2.790000e-28 137.0
12 TraesCS2B01G089600 chr2B 90.816 98 9 0 891 988 50626089 50626186 1.300000e-26 132.0
13 TraesCS2B01G089600 chr2D 93.977 2391 87 13 3366 5736 30658135 30660488 0.000000e+00 3565.0
14 TraesCS2B01G089600 chr2D 90.488 2050 120 34 238 2236 30655180 30657205 0.000000e+00 2636.0
15 TraesCS2B01G089600 chr2D 92.148 1108 61 14 2250 3343 30656916 30658011 0.000000e+00 1541.0
16 TraesCS2B01G089600 chr2D 81.243 837 111 32 3429 4254 630088399 630089200 8.110000e-178 634.0
17 TraesCS2B01G089600 chr2D 86.740 543 66 6 3429 3968 630635299 630634760 2.960000e-167 599.0
18 TraesCS2B01G089600 chr2D 81.818 737 105 18 3429 4158 629728918 629728204 4.950000e-165 592.0
19 TraesCS2B01G089600 chr2D 82.965 317 43 8 3429 3744 630049052 630049358 5.660000e-70 276.0
20 TraesCS2B01G089600 chr2D 95.181 83 4 0 906 988 30584287 30584369 1.300000e-26 132.0
21 TraesCS2B01G089600 chr2A 89.439 2405 159 32 3366 5736 32918522 32920865 0.000000e+00 2946.0
22 TraesCS2B01G089600 chr2A 96.077 1198 38 6 2153 3343 32917203 32918398 0.000000e+00 1943.0
23 TraesCS2B01G089600 chr2A 90.439 1297 104 8 3451 4743 33023467 33022187 0.000000e+00 1690.0
24 TraesCS2B01G089600 chr2A 88.475 1102 93 14 2250 3343 33008052 33006977 0.000000e+00 1301.0
25 TraesCS2B01G089600 chr2A 90.519 886 66 7 3372 4254 33006875 33006005 0.000000e+00 1155.0
26 TraesCS2B01G089600 chr2A 84.511 1033 104 23 4252 5253 33005971 33004964 0.000000e+00 970.0
27 TraesCS2B01G089600 chr2A 82.101 1190 98 42 916 2021 32916008 32917166 0.000000e+00 911.0
28 TraesCS2B01G089600 chr2A 84.574 564 72 7 3429 3991 760506373 760506922 3.910000e-151 545.0
29 TraesCS2B01G089600 chr2A 83.280 628 59 16 4788 5386 33022185 33021575 2.350000e-148 536.0
30 TraesCS2B01G089600 chr2A 77.686 968 110 59 906 1836 33009136 33008238 1.440000e-135 494.0
31 TraesCS2B01G089600 chr2A 81.347 386 35 19 1855 2235 33008135 33007782 4.380000e-71 279.0
32 TraesCS2B01G089600 chr2A 94.355 124 3 1 823 942 32912746 32912869 2.730000e-43 187.0
33 TraesCS2B01G089600 chr2A 78.968 252 46 5 4641 4887 760506920 760507169 1.280000e-36 165.0
34 TraesCS2B01G089600 chr2A 90.323 124 8 1 823 942 32930606 32930729 5.950000e-35 159.0
35 TraesCS2B01G089600 chr2A 87.500 136 10 5 1592 1723 108028363 108028231 3.580000e-32 150.0
36 TraesCS2B01G089600 chr2A 94.737 95 5 0 2250 2344 32917082 32917176 1.290000e-31 148.0
37 TraesCS2B01G089600 chr2A 96.296 81 3 0 908 988 32539968 32540048 3.610000e-27 134.0
38 TraesCS2B01G089600 chr2A 86.792 106 10 4 5281 5386 33004971 33004870 1.310000e-21 115.0
39 TraesCS2B01G089600 chr6D 85.714 539 49 13 2258 2790 447021189 447020673 1.410000e-150 544.0
40 TraesCS2B01G089600 chr3B 84.715 543 57 12 2258 2794 697171596 697171074 2.370000e-143 520.0
41 TraesCS2B01G089600 chr3B 87.037 108 7 5 1592 1695 697171758 697171654 1.310000e-21 115.0
42 TraesCS2B01G089600 chr1A 95.473 243 7 4 1 240 348565733 348565974 9.020000e-103 385.0
43 TraesCS2B01G089600 chr1A 94.628 242 9 4 1 240 101915570 101915331 7.020000e-99 372.0
44 TraesCS2B01G089600 chr7B 95.041 242 9 3 1 240 660443232 660443472 1.510000e-100 377.0
45 TraesCS2B01G089600 chr7D 94.628 242 12 1 1 241 394095220 394095461 1.950000e-99 374.0
46 TraesCS2B01G089600 chr3D 94.650 243 10 3 1 241 299536894 299537135 1.950000e-99 374.0
47 TraesCS2B01G089600 chr3A 93.952 248 13 2 1 246 705725249 705725496 1.950000e-99 374.0
48 TraesCS2B01G089600 chr6A 94.628 242 9 4 1 240 203411551 203411790 7.020000e-99 372.0
49 TraesCS2B01G089600 chr4D 94.628 242 10 3 1 240 318430592 318430832 7.020000e-99 372.0
50 TraesCS2B01G089600 chr7A 87.500 136 10 5 1592 1723 565752685 565752553 3.580000e-32 150.0
51 TraesCS2B01G089600 chr5B 73.810 210 38 8 405 613 547349308 547349501 3.710000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G089600 chr2B 50484588 50490323 5735 True 10593.000000 10593 100.000000 1 5736 1 chr2B.!!$R1 5735
1 TraesCS2B01G089600 chr2B 43799946 43804871 4925 False 1196.600000 3607 88.240400 985 5736 5 chr2B.!!$F2 4751
2 TraesCS2B01G089600 chr2B 50626089 50630445 4356 False 827.000000 1351 86.540800 891 5386 5 chr2B.!!$F3 4495
3 TraesCS2B01G089600 chr2D 30655180 30660488 5308 False 2580.666667 3565 92.204333 238 5736 3 chr2D.!!$F4 5498
4 TraesCS2B01G089600 chr2D 630088399 630089200 801 False 634.000000 634 81.243000 3429 4254 1 chr2D.!!$F3 825
5 TraesCS2B01G089600 chr2D 630634760 630635299 539 True 599.000000 599 86.740000 3429 3968 1 chr2D.!!$R2 539
6 TraesCS2B01G089600 chr2D 629728204 629728918 714 True 592.000000 592 81.818000 3429 4158 1 chr2D.!!$R1 729
7 TraesCS2B01G089600 chr2A 32912746 32920865 8119 False 1227.000000 2946 91.341800 823 5736 5 chr2A.!!$F3 4913
8 TraesCS2B01G089600 chr2A 33021575 33023467 1892 True 1113.000000 1690 86.859500 3451 5386 2 chr2A.!!$R3 1935
9 TraesCS2B01G089600 chr2A 33004870 33009136 4266 True 719.000000 1301 84.888333 906 5386 6 chr2A.!!$R2 4480
10 TraesCS2B01G089600 chr2A 760506373 760507169 796 False 355.000000 545 81.771000 3429 4887 2 chr2A.!!$F4 1458
11 TraesCS2B01G089600 chr6D 447020673 447021189 516 True 544.000000 544 85.714000 2258 2790 1 chr6D.!!$R1 532
12 TraesCS2B01G089600 chr3B 697171074 697171758 684 True 317.500000 520 85.876000 1592 2794 2 chr3B.!!$R1 1202

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.107848 CAACGCGGACCCCTCTTAAT 60.108 55.000 12.47 0.00 0.00 1.40 F
187 188 0.108377 ATGCACACGATTAGTCCGCA 60.108 50.000 0.00 0.00 40.16 5.69 F
981 4187 0.174617 GACAAGGGGAGAAGCGAGAG 59.825 60.000 0.00 0.00 0.00 3.20 F
1850 5743 0.252057 TCAGATGGGAGAACGGACCA 60.252 55.000 0.00 0.00 38.88 4.02 F
2189 6315 0.307760 CCCAGTCGTTCTGTGTTTGC 59.692 55.000 8.83 0.00 42.19 3.68 F
2354 6482 1.006281 TGTACCTGACCTCCCATACGT 59.994 52.381 0.00 0.00 0.00 3.57 F
2358 6486 1.486211 CTGACCTCCCATACGTCCTT 58.514 55.000 0.00 0.00 0.00 3.36 F
3970 8223 1.153667 GAGAAGCCTGCAGGAGTCG 60.154 63.158 37.21 9.96 37.39 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1341 4670 0.104304 CCAAGAACTCGTATCCCCCG 59.896 60.000 0.00 0.0 0.00 5.73 R
1850 5743 0.251341 GAAACCACCAGTGAGGGCAT 60.251 55.000 0.00 0.0 43.89 4.40 R
2303 6431 0.103390 TGAAACTGAACCGAGCACGA 59.897 50.000 4.70 0.0 42.66 4.35 R
3206 7350 1.024271 GAAGTCTGCTTTGTGCCACA 58.976 50.000 0.00 0.0 42.00 4.17 R
3679 7930 1.134250 GTCCATCCCTCTTCCAGAAGC 60.134 57.143 2.38 0.0 38.28 3.86 R
3763 8014 2.575532 TGAGCTCCTGAAACAAAGTGG 58.424 47.619 12.15 0.0 0.00 4.00 R
4351 8656 2.996621 GGTGAGTGTAATCTGTCAGTGC 59.003 50.000 0.00 0.0 0.00 4.40 R
5623 10055 1.075601 TGTTTCAGGAGGCCCTTGAT 58.924 50.000 0.00 0.0 42.02 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.172851 GTACGTGTTGATTCCACCCA 57.827 50.000 0.00 0.00 0.00 4.51
20 21 2.496111 GTACGTGTTGATTCCACCCAA 58.504 47.619 0.00 0.00 0.00 4.12
21 22 2.060050 ACGTGTTGATTCCACCCAAA 57.940 45.000 0.00 0.00 0.00 3.28
22 23 1.679153 ACGTGTTGATTCCACCCAAAC 59.321 47.619 0.00 0.00 0.00 2.93
23 24 1.000717 CGTGTTGATTCCACCCAAACC 60.001 52.381 0.00 0.00 0.00 3.27
24 25 2.316108 GTGTTGATTCCACCCAAACCT 58.684 47.619 0.00 0.00 0.00 3.50
25 26 2.698274 GTGTTGATTCCACCCAAACCTT 59.302 45.455 0.00 0.00 0.00 3.50
26 27 3.133901 GTGTTGATTCCACCCAAACCTTT 59.866 43.478 0.00 0.00 0.00 3.11
27 28 3.386402 TGTTGATTCCACCCAAACCTTTC 59.614 43.478 0.00 0.00 0.00 2.62
28 29 2.604139 TGATTCCACCCAAACCTTTCC 58.396 47.619 0.00 0.00 0.00 3.13
29 30 2.091055 TGATTCCACCCAAACCTTTCCA 60.091 45.455 0.00 0.00 0.00 3.53
30 31 2.552093 TTCCACCCAAACCTTTCCAA 57.448 45.000 0.00 0.00 0.00 3.53
31 32 1.783071 TCCACCCAAACCTTTCCAAC 58.217 50.000 0.00 0.00 0.00 3.77
32 33 0.387565 CCACCCAAACCTTTCCAACG 59.612 55.000 0.00 0.00 0.00 4.10
33 34 0.249280 CACCCAAACCTTTCCAACGC 60.249 55.000 0.00 0.00 0.00 4.84
34 35 1.007849 CCCAAACCTTTCCAACGCG 60.008 57.895 3.53 3.53 0.00 6.01
35 36 1.007849 CCAAACCTTTCCAACGCGG 60.008 57.895 12.47 0.00 0.00 6.46
36 37 1.448922 CCAAACCTTTCCAACGCGGA 61.449 55.000 12.47 0.00 44.40 5.54
37 38 0.317519 CAAACCTTTCCAACGCGGAC 60.318 55.000 12.47 0.00 46.36 4.79
38 39 1.449726 AAACCTTTCCAACGCGGACC 61.450 55.000 12.47 0.00 46.36 4.46
39 40 3.053896 CCTTTCCAACGCGGACCC 61.054 66.667 12.47 0.00 46.36 4.46
40 41 3.053896 CTTTCCAACGCGGACCCC 61.054 66.667 12.47 0.00 46.36 4.95
41 42 3.546714 CTTTCCAACGCGGACCCCT 62.547 63.158 12.47 0.00 46.36 4.79
42 43 3.540367 TTTCCAACGCGGACCCCTC 62.540 63.158 12.47 0.00 46.36 4.30
44 45 4.016706 CCAACGCGGACCCCTCTT 62.017 66.667 12.47 0.00 36.56 2.85
45 46 2.652095 CCAACGCGGACCCCTCTTA 61.652 63.158 12.47 0.00 36.56 2.10
46 47 1.294138 CAACGCGGACCCCTCTTAA 59.706 57.895 12.47 0.00 0.00 1.85
47 48 0.107848 CAACGCGGACCCCTCTTAAT 60.108 55.000 12.47 0.00 0.00 1.40
48 49 1.137479 CAACGCGGACCCCTCTTAATA 59.863 52.381 12.47 0.00 0.00 0.98
49 50 1.038280 ACGCGGACCCCTCTTAATAG 58.962 55.000 12.47 0.00 0.00 1.73
50 51 1.038280 CGCGGACCCCTCTTAATAGT 58.962 55.000 0.00 0.00 0.00 2.12
51 52 2.233271 CGCGGACCCCTCTTAATAGTA 58.767 52.381 0.00 0.00 0.00 1.82
52 53 2.030451 CGCGGACCCCTCTTAATAGTAC 60.030 54.545 0.00 0.00 0.00 2.73
53 54 2.030451 GCGGACCCCTCTTAATAGTACG 60.030 54.545 0.00 0.00 37.83 3.67
54 55 3.480470 CGGACCCCTCTTAATAGTACGA 58.520 50.000 0.00 0.00 36.92 3.43
55 56 3.251972 CGGACCCCTCTTAATAGTACGAC 59.748 52.174 0.00 0.00 36.92 4.34
56 57 4.468713 GGACCCCTCTTAATAGTACGACT 58.531 47.826 0.00 0.00 0.00 4.18
57 58 4.892345 GGACCCCTCTTAATAGTACGACTT 59.108 45.833 0.00 0.00 0.00 3.01
58 59 5.362143 GGACCCCTCTTAATAGTACGACTTT 59.638 44.000 0.00 0.00 0.00 2.66
59 60 6.460814 GGACCCCTCTTAATAGTACGACTTTC 60.461 46.154 0.00 0.00 0.00 2.62
60 61 5.362143 ACCCCTCTTAATAGTACGACTTTCC 59.638 44.000 0.00 0.00 0.00 3.13
61 62 5.597594 CCCCTCTTAATAGTACGACTTTCCT 59.402 44.000 0.00 0.00 0.00 3.36
62 63 6.774656 CCCCTCTTAATAGTACGACTTTCCTA 59.225 42.308 0.00 0.00 0.00 2.94
63 64 7.450944 CCCCTCTTAATAGTACGACTTTCCTAT 59.549 40.741 0.00 0.00 0.00 2.57
64 65 8.298140 CCCTCTTAATAGTACGACTTTCCTATG 58.702 40.741 0.00 0.00 0.00 2.23
65 66 9.064706 CCTCTTAATAGTACGACTTTCCTATGA 57.935 37.037 0.00 0.00 0.00 2.15
66 67 9.881529 CTCTTAATAGTACGACTTTCCTATGAC 57.118 37.037 0.00 0.00 0.00 3.06
67 68 9.624373 TCTTAATAGTACGACTTTCCTATGACT 57.376 33.333 0.00 0.00 0.00 3.41
68 69 9.881529 CTTAATAGTACGACTTTCCTATGACTC 57.118 37.037 0.00 0.00 0.00 3.36
69 70 7.876936 AATAGTACGACTTTCCTATGACTCA 57.123 36.000 0.00 0.00 0.00 3.41
70 71 7.876936 ATAGTACGACTTTCCTATGACTCAA 57.123 36.000 0.00 0.00 0.00 3.02
71 72 6.585695 AGTACGACTTTCCTATGACTCAAA 57.414 37.500 0.00 0.00 0.00 2.69
72 73 7.171630 AGTACGACTTTCCTATGACTCAAAT 57.828 36.000 0.00 0.00 0.00 2.32
73 74 7.612677 AGTACGACTTTCCTATGACTCAAATT 58.387 34.615 0.00 0.00 0.00 1.82
74 75 6.969828 ACGACTTTCCTATGACTCAAATTC 57.030 37.500 0.00 0.00 0.00 2.17
75 76 6.464222 ACGACTTTCCTATGACTCAAATTCA 58.536 36.000 0.00 0.00 0.00 2.57
76 77 6.369065 ACGACTTTCCTATGACTCAAATTCAC 59.631 38.462 0.00 0.00 0.00 3.18
77 78 6.183360 CGACTTTCCTATGACTCAAATTCACC 60.183 42.308 0.00 0.00 0.00 4.02
78 79 6.542821 ACTTTCCTATGACTCAAATTCACCA 58.457 36.000 0.00 0.00 0.00 4.17
79 80 6.656693 ACTTTCCTATGACTCAAATTCACCAG 59.343 38.462 0.00 0.00 0.00 4.00
80 81 6.373005 TTCCTATGACTCAAATTCACCAGA 57.627 37.500 0.00 0.00 0.00 3.86
81 82 6.373005 TCCTATGACTCAAATTCACCAGAA 57.627 37.500 0.00 0.00 38.31 3.02
82 83 6.778821 TCCTATGACTCAAATTCACCAGAAA 58.221 36.000 0.00 0.00 37.29 2.52
83 84 7.230747 TCCTATGACTCAAATTCACCAGAAAA 58.769 34.615 0.00 0.00 37.29 2.29
84 85 7.723616 TCCTATGACTCAAATTCACCAGAAAAA 59.276 33.333 0.00 0.00 37.29 1.94
105 106 6.937436 AAAAATGTAGAGAAACACCGTCTT 57.063 33.333 0.00 0.00 30.75 3.01
106 107 6.541111 AAAATGTAGAGAAACACCGTCTTC 57.459 37.500 0.00 0.00 30.75 2.87
107 108 4.866508 ATGTAGAGAAACACCGTCTTCA 57.133 40.909 0.00 0.00 30.75 3.02
108 109 4.659111 TGTAGAGAAACACCGTCTTCAA 57.341 40.909 0.00 0.00 0.00 2.69
109 110 5.209818 TGTAGAGAAACACCGTCTTCAAT 57.790 39.130 0.00 0.00 0.00 2.57
110 111 6.335471 TGTAGAGAAACACCGTCTTCAATA 57.665 37.500 0.00 0.00 0.00 1.90
111 112 6.387465 TGTAGAGAAACACCGTCTTCAATAG 58.613 40.000 0.00 0.00 0.00 1.73
112 113 5.470047 AGAGAAACACCGTCTTCAATAGT 57.530 39.130 0.00 0.00 0.00 2.12
113 114 5.471257 AGAGAAACACCGTCTTCAATAGTC 58.529 41.667 0.00 0.00 0.00 2.59
114 115 5.244178 AGAGAAACACCGTCTTCAATAGTCT 59.756 40.000 0.00 0.00 0.00 3.24
115 116 5.855045 AGAAACACCGTCTTCAATAGTCTT 58.145 37.500 0.00 0.00 0.00 3.01
116 117 5.927115 AGAAACACCGTCTTCAATAGTCTTC 59.073 40.000 0.00 0.00 0.00 2.87
117 118 3.834610 ACACCGTCTTCAATAGTCTTCG 58.165 45.455 0.00 0.00 0.00 3.79
118 119 3.504906 ACACCGTCTTCAATAGTCTTCGA 59.495 43.478 0.00 0.00 0.00 3.71
119 120 4.099120 CACCGTCTTCAATAGTCTTCGAG 58.901 47.826 0.00 0.00 0.00 4.04
120 121 3.128938 ACCGTCTTCAATAGTCTTCGAGG 59.871 47.826 0.00 0.00 0.00 4.63
121 122 3.489398 CCGTCTTCAATAGTCTTCGAGGG 60.489 52.174 0.00 0.00 0.00 4.30
122 123 3.489398 CGTCTTCAATAGTCTTCGAGGGG 60.489 52.174 0.00 0.00 0.00 4.79
123 124 2.431057 TCTTCAATAGTCTTCGAGGGGC 59.569 50.000 0.00 0.00 0.00 5.80
124 125 1.860641 TCAATAGTCTTCGAGGGGCA 58.139 50.000 0.00 0.00 0.00 5.36
125 126 1.480954 TCAATAGTCTTCGAGGGGCAC 59.519 52.381 0.00 0.00 0.00 5.01
139 140 3.773117 GGCACCAAATCGTCTTGTG 57.227 52.632 0.00 0.00 0.00 3.33
140 141 0.951558 GGCACCAAATCGTCTTGTGT 59.048 50.000 0.00 0.00 0.00 3.72
141 142 1.336755 GGCACCAAATCGTCTTGTGTT 59.663 47.619 0.00 0.00 0.00 3.32
142 143 2.223711 GGCACCAAATCGTCTTGTGTTT 60.224 45.455 0.00 0.00 0.00 2.83
143 144 3.003897 GGCACCAAATCGTCTTGTGTTTA 59.996 43.478 0.00 0.00 0.00 2.01
144 145 4.219033 GCACCAAATCGTCTTGTGTTTAG 58.781 43.478 0.00 0.00 0.00 1.85
145 146 4.024387 GCACCAAATCGTCTTGTGTTTAGA 60.024 41.667 0.00 0.00 0.00 2.10
146 147 5.440685 CACCAAATCGTCTTGTGTTTAGAC 58.559 41.667 0.00 0.00 38.88 2.59
147 148 5.007234 CACCAAATCGTCTTGTGTTTAGACA 59.993 40.000 0.00 0.00 41.64 3.41
148 149 5.763204 ACCAAATCGTCTTGTGTTTAGACAT 59.237 36.000 0.00 0.00 41.64 3.06
149 150 6.079763 CCAAATCGTCTTGTGTTTAGACATG 58.920 40.000 0.00 0.00 41.64 3.21
150 151 6.073276 CCAAATCGTCTTGTGTTTAGACATGA 60.073 38.462 0.00 0.00 41.64 3.07
151 152 7.361201 CCAAATCGTCTTGTGTTTAGACATGAT 60.361 37.037 0.00 0.00 41.64 2.45
152 153 8.655970 CAAATCGTCTTGTGTTTAGACATGATA 58.344 33.333 0.00 0.00 41.64 2.15
153 154 8.948631 AATCGTCTTGTGTTTAGACATGATAT 57.051 30.769 0.00 0.00 41.64 1.63
156 157 9.678941 TCGTCTTGTGTTTAGACATGATATATC 57.321 33.333 5.73 5.73 41.64 1.63
157 158 9.684448 CGTCTTGTGTTTAGACATGATATATCT 57.316 33.333 13.79 0.00 41.64 1.98
169 170 9.961264 AGACATGATATATCTGAAATGCTCAAT 57.039 29.630 13.79 0.00 32.17 2.57
170 171 9.989869 GACATGATATATCTGAAATGCTCAATG 57.010 33.333 13.79 6.92 32.17 2.82
171 172 8.459635 ACATGATATATCTGAAATGCTCAATGC 58.540 33.333 13.79 0.00 43.25 3.56
183 184 3.310303 GCTCAATGCACACGATTAGTC 57.690 47.619 0.00 0.00 42.31 2.59
184 185 2.030946 GCTCAATGCACACGATTAGTCC 59.969 50.000 0.00 0.00 42.31 3.85
185 186 2.267426 TCAATGCACACGATTAGTCCG 58.733 47.619 0.00 0.00 0.00 4.79
186 187 1.006832 AATGCACACGATTAGTCCGC 58.993 50.000 0.00 0.00 0.00 5.54
187 188 0.108377 ATGCACACGATTAGTCCGCA 60.108 50.000 0.00 0.00 40.16 5.69
188 189 0.319986 TGCACACGATTAGTCCGCAA 60.320 50.000 0.00 0.00 35.02 4.85
189 190 0.793861 GCACACGATTAGTCCGCAAA 59.206 50.000 0.00 0.00 0.00 3.68
190 191 1.195900 GCACACGATTAGTCCGCAAAA 59.804 47.619 0.00 0.00 0.00 2.44
191 192 2.724839 GCACACGATTAGTCCGCAAAAG 60.725 50.000 0.00 0.00 0.00 2.27
192 193 1.463444 ACACGATTAGTCCGCAAAAGC 59.537 47.619 0.00 0.00 0.00 3.51
193 194 1.463056 CACGATTAGTCCGCAAAAGCA 59.537 47.619 0.00 0.00 0.00 3.91
194 195 2.095853 CACGATTAGTCCGCAAAAGCAT 59.904 45.455 0.00 0.00 0.00 3.79
195 196 2.747446 ACGATTAGTCCGCAAAAGCATT 59.253 40.909 0.00 0.00 0.00 3.56
196 197 3.100817 CGATTAGTCCGCAAAAGCATTG 58.899 45.455 0.00 0.00 0.00 2.82
197 198 3.426159 CGATTAGTCCGCAAAAGCATTGT 60.426 43.478 4.47 0.00 0.00 2.71
198 199 3.552604 TTAGTCCGCAAAAGCATTGTC 57.447 42.857 4.47 0.00 0.00 3.18
199 200 1.317613 AGTCCGCAAAAGCATTGTCA 58.682 45.000 4.47 0.00 0.00 3.58
200 201 1.888512 AGTCCGCAAAAGCATTGTCAT 59.111 42.857 4.47 0.00 0.00 3.06
201 202 2.095059 AGTCCGCAAAAGCATTGTCATC 60.095 45.455 4.47 0.00 0.00 2.92
202 203 1.885233 TCCGCAAAAGCATTGTCATCA 59.115 42.857 4.47 0.00 0.00 3.07
203 204 2.295629 TCCGCAAAAGCATTGTCATCAA 59.704 40.909 4.47 0.00 37.98 2.57
204 205 3.056678 TCCGCAAAAGCATTGTCATCAAT 60.057 39.130 4.47 0.00 44.02 2.57
205 206 3.305094 CCGCAAAAGCATTGTCATCAATC 59.695 43.478 4.47 0.00 41.66 2.67
206 207 3.921630 CGCAAAAGCATTGTCATCAATCA 59.078 39.130 4.47 0.00 41.66 2.57
207 208 4.201551 CGCAAAAGCATTGTCATCAATCAC 60.202 41.667 4.47 0.00 41.66 3.06
208 209 4.092383 GCAAAAGCATTGTCATCAATCACC 59.908 41.667 4.47 0.00 41.66 4.02
209 210 5.231702 CAAAAGCATTGTCATCAATCACCA 58.768 37.500 0.00 0.00 41.66 4.17
210 211 5.471556 AAAGCATTGTCATCAATCACCAA 57.528 34.783 0.00 0.00 41.66 3.67
211 212 5.471556 AAGCATTGTCATCAATCACCAAA 57.528 34.783 0.00 0.00 41.66 3.28
212 213 5.471556 AGCATTGTCATCAATCACCAAAA 57.528 34.783 0.00 0.00 41.66 2.44
213 214 5.232463 AGCATTGTCATCAATCACCAAAAC 58.768 37.500 0.00 0.00 41.66 2.43
214 215 5.011329 AGCATTGTCATCAATCACCAAAACT 59.989 36.000 0.00 0.00 41.66 2.66
215 216 6.209192 AGCATTGTCATCAATCACCAAAACTA 59.791 34.615 0.00 0.00 41.66 2.24
216 217 6.308766 GCATTGTCATCAATCACCAAAACTAC 59.691 38.462 0.00 0.00 41.66 2.73
217 218 7.596494 CATTGTCATCAATCACCAAAACTACT 58.404 34.615 0.00 0.00 41.66 2.57
218 219 8.729756 CATTGTCATCAATCACCAAAACTACTA 58.270 33.333 0.00 0.00 41.66 1.82
219 220 7.905604 TGTCATCAATCACCAAAACTACTAG 57.094 36.000 0.00 0.00 0.00 2.57
220 221 6.878923 TGTCATCAATCACCAAAACTACTAGG 59.121 38.462 0.00 0.00 0.00 3.02
221 222 6.316390 GTCATCAATCACCAAAACTACTAGGG 59.684 42.308 0.00 0.00 0.00 3.53
222 223 5.174037 TCAATCACCAAAACTACTAGGGG 57.826 43.478 0.00 0.00 0.00 4.79
223 224 4.847512 TCAATCACCAAAACTACTAGGGGA 59.152 41.667 0.00 0.00 38.07 4.81
224 225 5.491078 TCAATCACCAAAACTACTAGGGGAT 59.509 40.000 0.00 0.00 45.89 3.85
225 226 6.674861 TCAATCACCAAAACTACTAGGGGATA 59.325 38.462 0.00 0.00 43.26 2.59
226 227 7.183112 TCAATCACCAAAACTACTAGGGGATAA 59.817 37.037 0.00 0.00 43.26 1.75
227 228 6.956102 TCACCAAAACTACTAGGGGATAAA 57.044 37.500 0.00 0.00 0.00 1.40
228 229 7.519347 TCACCAAAACTACTAGGGGATAAAT 57.481 36.000 0.00 0.00 0.00 1.40
229 230 8.626917 TCACCAAAACTACTAGGGGATAAATA 57.373 34.615 0.00 0.00 0.00 1.40
230 231 9.232882 TCACCAAAACTACTAGGGGATAAATAT 57.767 33.333 0.00 0.00 0.00 1.28
231 232 9.284968 CACCAAAACTACTAGGGGATAAATATG 57.715 37.037 0.00 0.00 0.00 1.78
232 233 7.942894 ACCAAAACTACTAGGGGATAAATATGC 59.057 37.037 0.00 0.00 0.00 3.14
233 234 7.393515 CCAAAACTACTAGGGGATAAATATGCC 59.606 40.741 2.57 2.57 42.77 4.40
261 262 4.929808 CACCCATGACGCCTAAATATACTC 59.070 45.833 0.00 0.00 0.00 2.59
264 265 3.293311 TGACGCCTAAATATACTCGGC 57.707 47.619 0.00 0.00 37.40 5.54
295 296 1.676006 CCGATTAAAATCTTGCCCGCT 59.324 47.619 1.52 0.00 33.24 5.52
326 327 4.767255 CTCGCGGCTGCCTCCTTT 62.767 66.667 17.92 0.00 38.08 3.11
396 413 0.323178 CCAAGAGCCTTCTGCCACAT 60.323 55.000 0.00 0.00 42.71 3.21
397 414 1.542492 CAAGAGCCTTCTGCCACATT 58.458 50.000 0.00 0.00 42.71 2.71
399 416 0.694771 AGAGCCTTCTGCCACATTGA 59.305 50.000 0.00 0.00 42.71 2.57
400 417 1.284198 AGAGCCTTCTGCCACATTGAT 59.716 47.619 0.00 0.00 42.71 2.57
402 419 1.180029 GCCTTCTGCCACATTGATGT 58.820 50.000 0.00 0.00 42.84 3.06
509 541 3.971702 GCACTGGCTCCAACCCCT 61.972 66.667 0.00 0.00 36.96 4.79
510 542 2.034687 CACTGGCTCCAACCCCTG 59.965 66.667 0.00 0.00 0.00 4.45
541 574 0.538287 GAGGTGGCCACTGCTTCTTT 60.538 55.000 33.91 10.52 37.74 2.52
592 625 0.527385 GGCGACAGCAAGAGAGCTAG 60.527 60.000 0.00 0.00 44.54 3.42
630 663 4.760047 CGCCGTCACCAAGGAGGG 62.760 72.222 0.00 0.00 43.88 4.30
656 689 3.814504 AGATGAAGAAAAGGAAGGCCA 57.185 42.857 5.01 0.00 36.29 5.36
663 696 0.537371 AAAAGGAAGGCCACTCCGTG 60.537 55.000 16.12 0.00 40.77 4.94
665 698 4.329545 GGAAGGCCACTCCGTGCA 62.330 66.667 5.01 0.00 40.77 4.57
689 723 3.195002 ACGTCCGGCGCATCATTG 61.195 61.111 10.83 0.00 46.11 2.82
719 753 1.893808 CCATCCATACGGCCACTGC 60.894 63.158 2.24 0.00 0.00 4.40
738 772 7.383300 GCCACTGCTCCATAAATTATGAAAATC 59.617 37.037 14.10 0.61 34.70 2.17
743 777 8.369424 TGCTCCATAAATTATGAAAATCATGGG 58.631 33.333 14.10 0.00 37.70 4.00
772 807 6.727824 ATCATGCGCCTTTATACATTAGTC 57.272 37.500 4.18 0.00 0.00 2.59
777 812 8.503196 CATGCGCCTTTATACATTAGTCAATAA 58.497 33.333 4.18 0.00 0.00 1.40
965 4171 0.865111 CGCAAATTCCACACGAGACA 59.135 50.000 0.00 0.00 0.00 3.41
981 4187 0.174617 GACAAGGGGAGAAGCGAGAG 59.825 60.000 0.00 0.00 0.00 3.20
1027 4268 3.566322 CCCGAAGAGAGAATACGATGACT 59.434 47.826 0.00 0.00 0.00 3.41
1341 4670 1.661509 GTTCTTGCGCCCAGTTTGC 60.662 57.895 4.18 0.00 0.00 3.68
1430 5168 4.873129 CTGTAGCATCGGCCGCGT 62.873 66.667 23.51 8.97 42.56 6.01
1453 5191 4.291792 TCGTAGGTTCCTCCAATGGATTA 58.708 43.478 0.87 0.00 39.02 1.75
1462 5200 7.725844 GGTTCCTCCAATGGATTAGTTTGATAT 59.274 37.037 0.87 0.00 35.83 1.63
1463 5201 9.793259 GTTCCTCCAATGGATTAGTTTGATATA 57.207 33.333 0.87 0.00 35.83 0.86
1465 5203 8.605947 TCCTCCAATGGATTAGTTTGATATAGG 58.394 37.037 0.87 0.00 0.00 2.57
1485 5223 1.079057 GCGGACCCTTCTGGAAGTC 60.079 63.158 9.15 2.77 36.72 3.01
1505 5245 1.004745 CCTTGCAGTTAGTGGGGATGT 59.995 52.381 0.00 0.00 0.00 3.06
1562 5340 2.561478 TCAGCTGAACTTGGTAACCC 57.439 50.000 15.67 0.00 0.00 4.11
1683 5490 2.301583 GGGGAGCTAGGAGATGATGAAC 59.698 54.545 0.00 0.00 0.00 3.18
1790 5599 7.623630 TCTTCATGAGTGATGAGGAAACATAA 58.376 34.615 1.86 0.00 42.58 1.90
1792 5601 6.950842 TCATGAGTGATGAGGAAACATAACT 58.049 36.000 0.00 0.00 42.63 2.24
1850 5743 0.252057 TCAGATGGGAGAACGGACCA 60.252 55.000 0.00 0.00 38.88 4.02
1877 5770 1.959226 CTGGTGGTTTCGGGTGTCG 60.959 63.158 0.00 0.00 40.90 4.35
1926 5819 2.906389 TCAGGTGAGAATGCTGTACCTT 59.094 45.455 3.84 0.00 36.62 3.50
1963 5864 3.829886 TTCAACGATGAAGTGAATGCC 57.170 42.857 3.72 0.00 40.59 4.40
1974 5875 5.624159 TGAAGTGAATGCCCTCTATAATGG 58.376 41.667 0.00 0.00 0.00 3.16
2000 5904 3.685139 ATTCTCTTTCTTGTGCTCGGA 57.315 42.857 0.00 0.00 0.00 4.55
2047 6173 1.292223 GCACCTGAGCGTACCTGAA 59.708 57.895 0.00 0.00 0.00 3.02
2049 6175 0.732880 CACCTGAGCGTACCTGAACG 60.733 60.000 0.00 0.00 45.58 3.95
2162 6288 7.556275 TCTCAAACATTTCCTCAGTAAACTTGT 59.444 33.333 0.00 0.00 0.00 3.16
2189 6315 0.307760 CCCAGTCGTTCTGTGTTTGC 59.692 55.000 8.83 0.00 42.19 3.68
2195 6321 3.555956 AGTCGTTCTGTGTTTGCTTACTG 59.444 43.478 0.00 0.00 0.00 2.74
2199 6325 5.092781 CGTTCTGTGTTTGCTTACTGTTTT 58.907 37.500 0.00 0.00 0.00 2.43
2236 6362 6.028146 AGATGTTGTATTGAGCAATTGCAA 57.972 33.333 30.89 18.30 45.16 4.08
2238 6364 6.755141 AGATGTTGTATTGAGCAATTGCAATC 59.245 34.615 30.89 20.81 45.16 2.67
2239 6365 6.028146 TGTTGTATTGAGCAATTGCAATCT 57.972 33.333 30.89 11.52 45.16 2.40
2240 6366 6.457355 TGTTGTATTGAGCAATTGCAATCTT 58.543 32.000 30.89 11.11 45.16 2.40
2241 6367 7.600960 TGTTGTATTGAGCAATTGCAATCTTA 58.399 30.769 30.89 13.31 45.16 2.10
2242 6368 7.756272 TGTTGTATTGAGCAATTGCAATCTTAG 59.244 33.333 30.89 4.70 45.16 2.18
2243 6369 7.628769 TGTATTGAGCAATTGCAATCTTAGA 57.371 32.000 30.89 11.99 45.16 2.10
2244 6370 8.229253 TGTATTGAGCAATTGCAATCTTAGAT 57.771 30.769 30.89 14.74 45.16 1.98
2245 6371 8.132995 TGTATTGAGCAATTGCAATCTTAGATG 58.867 33.333 30.89 7.28 45.16 2.90
2246 6372 6.762702 TTGAGCAATTGCAATCTTAGATGA 57.237 33.333 30.89 0.00 45.16 2.92
2247 6373 6.954487 TGAGCAATTGCAATCTTAGATGAT 57.046 33.333 30.89 4.58 45.16 2.45
2248 6374 6.735130 TGAGCAATTGCAATCTTAGATGATG 58.265 36.000 30.89 5.02 45.16 3.07
2249 6375 6.320418 TGAGCAATTGCAATCTTAGATGATGT 59.680 34.615 30.89 5.29 45.16 3.06
2250 6376 7.499895 TGAGCAATTGCAATCTTAGATGATGTA 59.500 33.333 30.89 0.00 45.16 2.29
2251 6377 8.229253 AGCAATTGCAATCTTAGATGATGTAA 57.771 30.769 30.89 0.00 45.16 2.41
2252 6378 8.350722 AGCAATTGCAATCTTAGATGATGTAAG 58.649 33.333 30.89 3.15 45.16 2.34
2253 6379 7.114529 GCAATTGCAATCTTAGATGATGTAAGC 59.885 37.037 25.36 0.00 41.59 3.09
2254 6380 8.350722 CAATTGCAATCTTAGATGATGTAAGCT 58.649 33.333 13.38 0.00 0.00 3.74
2255 6381 7.488187 TTGCAATCTTAGATGATGTAAGCTC 57.512 36.000 4.60 0.00 0.00 4.09
2256 6382 6.824553 TGCAATCTTAGATGATGTAAGCTCT 58.175 36.000 4.60 0.00 0.00 4.09
2289 6417 4.488126 GTGAATGCACTCTGTAAAGCAA 57.512 40.909 0.00 0.00 41.84 3.91
2292 6420 6.611381 GTGAATGCACTCTGTAAAGCAATAA 58.389 36.000 0.00 0.00 41.84 1.40
2317 6445 1.864711 TCTTTTTCGTGCTCGGTTCAG 59.135 47.619 8.49 0.77 37.69 3.02
2326 6454 1.149148 GCTCGGTTCAGTTTCAGACC 58.851 55.000 0.00 0.00 0.00 3.85
2340 6468 1.147191 TCAGACCACCTGAGTGTACCT 59.853 52.381 0.00 0.00 46.38 3.08
2350 6478 1.078823 TGAGTGTACCTGACCTCCCAT 59.921 52.381 0.00 0.00 0.00 4.00
2352 6480 2.694109 GAGTGTACCTGACCTCCCATAC 59.306 54.545 0.00 0.00 0.00 2.39
2354 6482 1.006281 TGTACCTGACCTCCCATACGT 59.994 52.381 0.00 0.00 0.00 3.57
2358 6486 1.486211 CTGACCTCCCATACGTCCTT 58.514 55.000 0.00 0.00 0.00 3.36
2364 6492 2.482490 CCTCCCATACGTCCTTTTACCG 60.482 54.545 0.00 0.00 0.00 4.02
2365 6493 2.167075 CTCCCATACGTCCTTTTACCGT 59.833 50.000 0.00 0.00 38.53 4.83
2367 6495 3.381272 TCCCATACGTCCTTTTACCGTAG 59.619 47.826 0.00 0.00 40.02 3.51
2368 6496 3.381272 CCCATACGTCCTTTTACCGTAGA 59.619 47.826 0.00 0.00 40.02 2.59
2369 6497 4.354587 CCATACGTCCTTTTACCGTAGAC 58.645 47.826 0.00 0.00 40.02 2.59
2370 6498 4.096984 CCATACGTCCTTTTACCGTAGACT 59.903 45.833 0.00 0.00 40.02 3.24
2371 6499 5.296780 CCATACGTCCTTTTACCGTAGACTA 59.703 44.000 0.00 0.00 40.02 2.59
2372 6500 6.016777 CCATACGTCCTTTTACCGTAGACTAT 60.017 42.308 0.00 0.00 40.02 2.12
2378 6506 6.750963 GTCCTTTTACCGTAGACTATCACAAG 59.249 42.308 0.00 0.00 0.00 3.16
2385 6513 7.818997 ACCGTAGACTATCACAAGATATTCA 57.181 36.000 0.00 0.00 38.31 2.57
2386 6514 7.877003 ACCGTAGACTATCACAAGATATTCAG 58.123 38.462 0.00 0.00 38.31 3.02
2432 6560 8.103948 CCATGATATTTGGGAGTTACATTCTC 57.896 38.462 0.00 0.00 0.00 2.87
2435 6563 9.872684 ATGATATTTGGGAGTTACATTCTCAAT 57.127 29.630 0.00 0.00 35.14 2.57
2436 6564 9.342308 TGATATTTGGGAGTTACATTCTCAATC 57.658 33.333 0.00 0.00 35.14 2.67
2444 6572 7.415653 GGGAGTTACATTCTCAATCATTTCCAC 60.416 40.741 0.00 0.00 34.04 4.02
2445 6573 7.121168 GGAGTTACATTCTCAATCATTTCCACA 59.879 37.037 0.00 0.00 34.04 4.17
2446 6574 8.048534 AGTTACATTCTCAATCATTTCCACAG 57.951 34.615 0.00 0.00 0.00 3.66
2495 6623 8.417176 CGTTATGTGTTTGTTTATTCTTTCAGC 58.583 33.333 0.00 0.00 0.00 4.26
2499 6627 8.795786 TGTGTTTGTTTATTCTTTCAGCATAC 57.204 30.769 0.00 0.00 0.00 2.39
2647 6776 7.773224 TGAAACAGAAGTTCTCTTACCATGAAA 59.227 33.333 1.26 0.00 36.84 2.69
2733 6869 5.188434 TCCAAATCCATGCTCAAGTTAGAG 58.812 41.667 0.00 0.00 38.68 2.43
3188 7332 6.991938 TGGAATGTTTGGAAATGTCTAAAGG 58.008 36.000 0.00 0.00 35.17 3.11
3206 7350 8.308207 GTCTAAAGGTAGATTCTCTTGTCTTGT 58.692 37.037 0.00 0.00 38.62 3.16
3211 7355 3.406764 AGATTCTCTTGTCTTGTGTGGC 58.593 45.455 0.00 0.00 0.00 5.01
3332 7479 8.660435 CCCTTATCTCCTTCTCCATTTATGTAA 58.340 37.037 0.00 0.00 0.00 2.41
3398 7646 9.474920 TGAACAATGCCTTAAAGAAAATAACAG 57.525 29.630 0.00 0.00 0.00 3.16
3461 7709 4.273318 AGGGCACTAGAATGTTTCATTCC 58.727 43.478 15.81 3.84 0.00 3.01
3475 7723 7.581213 TGTTTCATTCCTTCACAGTTGTATT 57.419 32.000 0.00 0.00 0.00 1.89
3668 7919 9.605951 ATCTTTGGCTGGGTTTATATGATATTT 57.394 29.630 0.00 0.00 0.00 1.40
3707 7958 2.463047 AGAGGGATGGACTCCTGTAC 57.537 55.000 0.00 0.00 44.28 2.90
3732 7983 7.335422 ACCACTTTGACATTCTCTTCATGATAC 59.665 37.037 0.00 0.00 0.00 2.24
3970 8223 1.153667 GAGAAGCCTGCAGGAGTCG 60.154 63.158 37.21 9.96 37.39 4.18
3995 8248 3.157881 TCAGGCAGGAGTAAGGATATCG 58.842 50.000 0.00 0.00 0.00 2.92
4086 8347 4.157246 TCCTTAGGTTGCTTACTGAGACA 58.843 43.478 0.00 0.00 0.00 3.41
4149 8410 7.396055 CCTAAAAATTTGAATGTCCTCCAGGTA 59.604 37.037 0.00 0.00 36.34 3.08
4169 8434 4.039366 GGTAGAATTTCTGCTCCCTCGTAT 59.961 45.833 13.22 0.00 29.49 3.06
4189 8454 8.521170 TCGTATTATCCTCGGATATCATTCTT 57.479 34.615 4.83 0.00 37.02 2.52
4191 8456 7.649705 CGTATTATCCTCGGATATCATTCTTGG 59.350 40.741 4.83 0.00 37.02 3.61
4194 8459 8.609617 TTATCCTCGGATATCATTCTTGGTAT 57.390 34.615 4.83 0.00 37.02 2.73
4195 8460 9.709387 TTATCCTCGGATATCATTCTTGGTATA 57.291 33.333 4.83 0.00 37.02 1.47
4196 8461 7.406031 TCCTCGGATATCATTCTTGGTATAC 57.594 40.000 4.83 0.00 29.01 1.47
4197 8462 7.182760 TCCTCGGATATCATTCTTGGTATACT 58.817 38.462 4.83 0.00 28.71 2.12
4198 8463 7.122799 TCCTCGGATATCATTCTTGGTATACTG 59.877 40.741 4.83 0.00 28.71 2.74
4231 8496 3.885901 GGATTATCTTGCCCTCTTTGTCC 59.114 47.826 0.00 0.00 0.00 4.02
4254 8555 7.934120 GTCCTTGAGACTTGGCATACTAATTAT 59.066 37.037 0.00 0.00 42.69 1.28
4495 8800 3.259930 GGCATACCGTTGCGTGTT 58.740 55.556 0.00 0.00 43.71 3.32
4513 8818 2.167693 TGTTGAAGTCGTGGACAAGAGT 59.832 45.455 0.00 0.00 34.60 3.24
4542 8847 1.684450 TCGAGGTGTGTTAGTGAAGCA 59.316 47.619 0.00 0.00 0.00 3.91
4564 8869 3.772025 ACCTCGATTTCTTCCATGAGTCT 59.228 43.478 0.00 0.00 0.00 3.24
4596 8901 1.079057 GCCCTCTCCGTTTGACTCC 60.079 63.158 0.00 0.00 0.00 3.85
4648 8953 0.179062 CGCTGAAGCAGGGAAGCTAT 60.179 55.000 5.67 0.00 45.89 2.97
4901 9256 2.298610 CTGAATGACATGCCATGCTCT 58.701 47.619 4.17 0.00 0.00 4.09
4902 9257 3.473625 CTGAATGACATGCCATGCTCTA 58.526 45.455 4.17 0.00 0.00 2.43
4940 9310 9.938280 AGCTGTTGTTAGTTACTCATGTATTTA 57.062 29.630 0.00 0.00 0.00 1.40
4974 9344 8.026607 GCTACAGAATAGAAGATGTGATAGGAC 58.973 40.741 0.00 0.00 0.00 3.85
5309 9710 2.492088 GTGCCAATCCCAGTTACTTTCC 59.508 50.000 0.00 0.00 0.00 3.13
5315 9716 6.461509 GCCAATCCCAGTTACTTTCCAATATG 60.462 42.308 0.00 0.00 0.00 1.78
5386 9816 5.338632 TCTTAGGGAAGTGAACCATCTGTA 58.661 41.667 0.00 0.00 34.03 2.74
5427 9857 7.750458 ACTTACATCATTGTTAATTGCTTCACG 59.250 33.333 0.00 0.00 37.28 4.35
5438 9868 8.079203 TGTTAATTGCTTCACGTTTGTTGATAT 58.921 29.630 0.00 0.00 0.00 1.63
5504 9935 3.804036 ACGTTGTCCAAGATGAGTTTCA 58.196 40.909 0.00 0.00 0.00 2.69
5525 9956 2.296471 ACACTACTCTCGGTTGTTCAGG 59.704 50.000 0.00 0.00 32.00 3.86
5595 10027 5.296780 TCAATCAAAACCGAAGCCATCTATC 59.703 40.000 0.00 0.00 0.00 2.08
5671 10103 2.093306 TTGGCAATCGTAGGTCACAG 57.907 50.000 0.00 0.00 0.00 3.66
5702 10134 9.830186 ACTATGTGAGTAATATCAGGACCTATT 57.170 33.333 0.00 0.00 36.27 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.172851 TGGGTGGAATCAACACGTAC 57.827 50.000 0.00 0.00 39.69 3.67
1 2 2.879646 GTTTGGGTGGAATCAACACGTA 59.120 45.455 0.00 0.00 39.69 3.57
3 4 1.000717 GGTTTGGGTGGAATCAACACG 60.001 52.381 0.00 0.00 39.69 4.49
4 5 2.316108 AGGTTTGGGTGGAATCAACAC 58.684 47.619 0.00 0.00 38.10 3.32
5 6 2.765689 AGGTTTGGGTGGAATCAACA 57.234 45.000 0.00 0.00 30.63 3.33
6 7 3.244078 GGAAAGGTTTGGGTGGAATCAAC 60.244 47.826 0.00 0.00 0.00 3.18
7 8 2.969262 GGAAAGGTTTGGGTGGAATCAA 59.031 45.455 0.00 0.00 0.00 2.57
8 9 2.091055 TGGAAAGGTTTGGGTGGAATCA 60.091 45.455 0.00 0.00 0.00 2.57
9 10 2.604139 TGGAAAGGTTTGGGTGGAATC 58.396 47.619 0.00 0.00 0.00 2.52
10 11 2.703536 GTTGGAAAGGTTTGGGTGGAAT 59.296 45.455 0.00 0.00 0.00 3.01
11 12 2.112190 GTTGGAAAGGTTTGGGTGGAA 58.888 47.619 0.00 0.00 0.00 3.53
12 13 1.783071 GTTGGAAAGGTTTGGGTGGA 58.217 50.000 0.00 0.00 0.00 4.02
13 14 0.387565 CGTTGGAAAGGTTTGGGTGG 59.612 55.000 0.00 0.00 0.00 4.61
14 15 0.249280 GCGTTGGAAAGGTTTGGGTG 60.249 55.000 0.00 0.00 33.49 4.61
15 16 1.730451 CGCGTTGGAAAGGTTTGGGT 61.730 55.000 0.00 0.00 33.49 4.51
16 17 1.007849 CGCGTTGGAAAGGTTTGGG 60.008 57.895 0.00 0.00 33.49 4.12
17 18 1.007849 CCGCGTTGGAAAGGTTTGG 60.008 57.895 4.92 0.00 42.00 3.28
18 19 2.026522 TCCGCGTTGGAAAGGTTTG 58.973 52.632 4.92 0.00 46.38 2.93
19 20 4.563404 TCCGCGTTGGAAAGGTTT 57.437 50.000 4.92 0.00 46.38 3.27
27 28 2.175035 TTAAGAGGGGTCCGCGTTGG 62.175 60.000 4.92 0.00 40.09 3.77
28 29 0.107848 ATTAAGAGGGGTCCGCGTTG 60.108 55.000 4.92 0.00 0.00 4.10
29 30 1.411612 CTATTAAGAGGGGTCCGCGTT 59.588 52.381 4.92 1.36 0.00 4.84
30 31 1.038280 CTATTAAGAGGGGTCCGCGT 58.962 55.000 4.92 0.00 0.00 6.01
31 32 1.038280 ACTATTAAGAGGGGTCCGCG 58.962 55.000 0.00 0.00 0.00 6.46
32 33 2.030451 CGTACTATTAAGAGGGGTCCGC 60.030 54.545 1.59 0.00 0.00 5.54
33 34 3.251972 GTCGTACTATTAAGAGGGGTCCG 59.748 52.174 1.59 0.00 0.00 4.79
34 35 4.468713 AGTCGTACTATTAAGAGGGGTCC 58.531 47.826 1.59 0.00 0.00 4.46
35 36 6.460814 GGAAAGTCGTACTATTAAGAGGGGTC 60.461 46.154 1.59 0.00 0.00 4.46
36 37 5.362143 GGAAAGTCGTACTATTAAGAGGGGT 59.638 44.000 1.59 0.00 0.00 4.95
37 38 5.597594 AGGAAAGTCGTACTATTAAGAGGGG 59.402 44.000 1.59 0.00 0.00 4.79
38 39 6.712179 AGGAAAGTCGTACTATTAAGAGGG 57.288 41.667 1.59 0.00 0.00 4.30
39 40 9.064706 TCATAGGAAAGTCGTACTATTAAGAGG 57.935 37.037 1.59 0.00 0.00 3.69
40 41 9.881529 GTCATAGGAAAGTCGTACTATTAAGAG 57.118 37.037 0.00 0.00 0.00 2.85
41 42 9.624373 AGTCATAGGAAAGTCGTACTATTAAGA 57.376 33.333 0.00 0.00 0.00 2.10
42 43 9.881529 GAGTCATAGGAAAGTCGTACTATTAAG 57.118 37.037 0.00 0.00 0.00 1.85
43 44 9.399797 TGAGTCATAGGAAAGTCGTACTATTAA 57.600 33.333 0.00 0.00 0.00 1.40
44 45 8.969260 TGAGTCATAGGAAAGTCGTACTATTA 57.031 34.615 0.00 0.00 0.00 0.98
45 46 7.876936 TGAGTCATAGGAAAGTCGTACTATT 57.123 36.000 0.00 0.00 0.00 1.73
46 47 7.876936 TTGAGTCATAGGAAAGTCGTACTAT 57.123 36.000 0.00 0.00 0.00 2.12
47 48 7.692460 TTTGAGTCATAGGAAAGTCGTACTA 57.308 36.000 0.00 0.00 0.00 1.82
48 49 6.585695 TTTGAGTCATAGGAAAGTCGTACT 57.414 37.500 0.00 0.00 0.00 2.73
49 50 7.544566 TGAATTTGAGTCATAGGAAAGTCGTAC 59.455 37.037 0.00 0.00 0.00 3.67
50 51 7.544566 GTGAATTTGAGTCATAGGAAAGTCGTA 59.455 37.037 0.00 0.00 0.00 3.43
51 52 6.369065 GTGAATTTGAGTCATAGGAAAGTCGT 59.631 38.462 0.00 0.00 0.00 4.34
52 53 6.183360 GGTGAATTTGAGTCATAGGAAAGTCG 60.183 42.308 0.00 0.00 0.00 4.18
53 54 6.655003 TGGTGAATTTGAGTCATAGGAAAGTC 59.345 38.462 0.00 0.00 0.00 3.01
54 55 6.542821 TGGTGAATTTGAGTCATAGGAAAGT 58.457 36.000 0.00 0.00 0.00 2.66
55 56 6.881065 TCTGGTGAATTTGAGTCATAGGAAAG 59.119 38.462 0.00 0.00 0.00 2.62
56 57 6.778821 TCTGGTGAATTTGAGTCATAGGAAA 58.221 36.000 0.00 0.00 0.00 3.13
57 58 6.373005 TCTGGTGAATTTGAGTCATAGGAA 57.627 37.500 0.00 0.00 0.00 3.36
58 59 6.373005 TTCTGGTGAATTTGAGTCATAGGA 57.627 37.500 0.00 0.00 0.00 2.94
59 60 7.452880 TTTTCTGGTGAATTTGAGTCATAGG 57.547 36.000 0.00 0.00 31.56 2.57
82 83 6.540914 TGAAGACGGTGTTTCTCTACATTTTT 59.459 34.615 0.00 0.00 0.00 1.94
83 84 6.053005 TGAAGACGGTGTTTCTCTACATTTT 58.947 36.000 0.00 0.00 0.00 1.82
84 85 5.607477 TGAAGACGGTGTTTCTCTACATTT 58.393 37.500 0.00 0.00 0.00 2.32
85 86 5.209818 TGAAGACGGTGTTTCTCTACATT 57.790 39.130 0.00 0.00 0.00 2.71
86 87 4.866508 TGAAGACGGTGTTTCTCTACAT 57.133 40.909 0.00 0.00 0.00 2.29
87 88 4.659111 TTGAAGACGGTGTTTCTCTACA 57.341 40.909 0.00 0.00 0.00 2.74
88 89 6.388278 ACTATTGAAGACGGTGTTTCTCTAC 58.612 40.000 0.00 0.00 0.00 2.59
89 90 6.433404 AGACTATTGAAGACGGTGTTTCTCTA 59.567 38.462 0.00 0.00 0.00 2.43
90 91 5.244178 AGACTATTGAAGACGGTGTTTCTCT 59.756 40.000 0.00 0.00 0.00 3.10
91 92 5.471257 AGACTATTGAAGACGGTGTTTCTC 58.529 41.667 0.00 0.00 0.00 2.87
92 93 5.470047 AGACTATTGAAGACGGTGTTTCT 57.530 39.130 0.00 0.00 0.00 2.52
93 94 5.164080 CGAAGACTATTGAAGACGGTGTTTC 60.164 44.000 0.00 0.00 0.00 2.78
94 95 4.684703 CGAAGACTATTGAAGACGGTGTTT 59.315 41.667 0.00 0.00 0.00 2.83
95 96 4.022589 TCGAAGACTATTGAAGACGGTGTT 60.023 41.667 0.00 0.00 0.00 3.32
96 97 3.504906 TCGAAGACTATTGAAGACGGTGT 59.495 43.478 0.00 0.00 0.00 4.16
97 98 4.092771 TCGAAGACTATTGAAGACGGTG 57.907 45.455 0.00 0.00 0.00 4.94
98 99 3.128938 CCTCGAAGACTATTGAAGACGGT 59.871 47.826 0.00 0.00 0.00 4.83
99 100 3.489398 CCCTCGAAGACTATTGAAGACGG 60.489 52.174 0.00 0.00 0.00 4.79
100 101 3.489398 CCCCTCGAAGACTATTGAAGACG 60.489 52.174 0.00 0.00 0.00 4.18
101 102 3.738590 GCCCCTCGAAGACTATTGAAGAC 60.739 52.174 0.00 0.00 0.00 3.01
102 103 2.431057 GCCCCTCGAAGACTATTGAAGA 59.569 50.000 0.00 0.00 0.00 2.87
103 104 2.168521 TGCCCCTCGAAGACTATTGAAG 59.831 50.000 0.00 0.00 0.00 3.02
104 105 2.093658 GTGCCCCTCGAAGACTATTGAA 60.094 50.000 0.00 0.00 0.00 2.69
105 106 1.480954 GTGCCCCTCGAAGACTATTGA 59.519 52.381 0.00 0.00 0.00 2.57
106 107 1.473434 GGTGCCCCTCGAAGACTATTG 60.473 57.143 0.00 0.00 0.00 1.90
107 108 0.831307 GGTGCCCCTCGAAGACTATT 59.169 55.000 0.00 0.00 0.00 1.73
108 109 0.325296 TGGTGCCCCTCGAAGACTAT 60.325 55.000 0.00 0.00 0.00 2.12
109 110 0.543410 TTGGTGCCCCTCGAAGACTA 60.543 55.000 0.00 0.00 0.00 2.59
110 111 1.415672 TTTGGTGCCCCTCGAAGACT 61.416 55.000 0.00 0.00 0.00 3.24
111 112 0.322546 ATTTGGTGCCCCTCGAAGAC 60.323 55.000 0.00 0.00 0.00 3.01
112 113 0.035439 GATTTGGTGCCCCTCGAAGA 60.035 55.000 0.00 0.00 0.00 2.87
113 114 1.369091 CGATTTGGTGCCCCTCGAAG 61.369 60.000 0.00 0.00 0.00 3.79
114 115 1.376683 CGATTTGGTGCCCCTCGAA 60.377 57.895 0.00 0.00 0.00 3.71
115 116 2.267642 CGATTTGGTGCCCCTCGA 59.732 61.111 0.00 0.00 0.00 4.04
116 117 2.046314 ACGATTTGGTGCCCCTCG 60.046 61.111 0.00 0.00 35.56 4.63
117 118 0.322546 AAGACGATTTGGTGCCCCTC 60.323 55.000 0.00 0.00 0.00 4.30
118 119 0.609131 CAAGACGATTTGGTGCCCCT 60.609 55.000 0.00 0.00 0.00 4.79
119 120 0.893727 ACAAGACGATTTGGTGCCCC 60.894 55.000 0.00 0.00 32.32 5.80
120 121 0.240945 CACAAGACGATTTGGTGCCC 59.759 55.000 0.00 0.00 32.32 5.36
121 122 0.951558 ACACAAGACGATTTGGTGCC 59.048 50.000 0.00 0.00 32.32 5.01
122 123 2.774439 AACACAAGACGATTTGGTGC 57.226 45.000 0.00 0.00 32.32 5.01
123 124 5.007234 TGTCTAAACACAAGACGATTTGGTG 59.993 40.000 0.00 0.00 45.19 4.17
124 125 5.120399 TGTCTAAACACAAGACGATTTGGT 58.880 37.500 0.00 0.00 45.19 3.67
125 126 5.666969 TGTCTAAACACAAGACGATTTGG 57.333 39.130 0.00 0.00 45.19 3.28
126 127 6.887368 TCATGTCTAAACACAAGACGATTTG 58.113 36.000 0.00 0.00 45.19 2.32
127 128 7.672983 ATCATGTCTAAACACAAGACGATTT 57.327 32.000 0.00 0.00 45.19 2.17
128 129 8.948631 ATATCATGTCTAAACACAAGACGATT 57.051 30.769 0.00 0.00 45.19 3.34
130 131 9.678941 GATATATCATGTCTAAACACAAGACGA 57.321 33.333 7.89 0.00 45.19 4.20
131 132 9.684448 AGATATATCATGTCTAAACACAAGACG 57.316 33.333 15.08 0.00 45.19 4.18
143 144 9.961264 ATTGAGCATTTCAGATATATCATGTCT 57.039 29.630 15.08 10.14 37.07 3.41
144 145 9.989869 CATTGAGCATTTCAGATATATCATGTC 57.010 33.333 15.08 9.60 37.07 3.06
145 146 8.459635 GCATTGAGCATTTCAGATATATCATGT 58.540 33.333 15.08 1.83 44.79 3.21
146 147 8.842942 GCATTGAGCATTTCAGATATATCATG 57.157 34.615 15.08 10.22 44.79 3.07
163 164 2.030946 GGACTAATCGTGTGCATTGAGC 59.969 50.000 0.00 0.00 45.96 4.26
164 165 2.282555 CGGACTAATCGTGTGCATTGAG 59.717 50.000 0.00 0.00 0.00 3.02
165 166 2.267426 CGGACTAATCGTGTGCATTGA 58.733 47.619 0.00 0.00 0.00 2.57
166 167 1.267532 GCGGACTAATCGTGTGCATTG 60.268 52.381 0.00 0.00 0.00 2.82
167 168 1.006832 GCGGACTAATCGTGTGCATT 58.993 50.000 0.00 0.00 0.00 3.56
168 169 0.108377 TGCGGACTAATCGTGTGCAT 60.108 50.000 0.00 0.00 30.12 3.96
169 170 0.319986 TTGCGGACTAATCGTGTGCA 60.320 50.000 0.00 0.00 32.40 4.57
170 171 0.793861 TTTGCGGACTAATCGTGTGC 59.206 50.000 0.00 0.00 0.00 4.57
171 172 2.724839 GCTTTTGCGGACTAATCGTGTG 60.725 50.000 0.00 0.00 34.86 3.82
172 173 1.463444 GCTTTTGCGGACTAATCGTGT 59.537 47.619 0.00 0.00 34.86 4.49
173 174 2.159467 GCTTTTGCGGACTAATCGTG 57.841 50.000 0.00 0.00 34.86 4.35
178 179 9.392705 ATTGATGACAATGCTTTTGCGGACTAA 62.393 37.037 0.00 0.00 43.90 2.24
179 180 8.013948 ATTGATGACAATGCTTTTGCGGACTA 62.014 38.462 0.00 0.00 43.90 2.59
180 181 7.293939 ATTGATGACAATGCTTTTGCGGACT 62.294 40.000 0.00 0.00 43.90 3.85
181 182 5.147208 ATTGATGACAATGCTTTTGCGGAC 61.147 41.667 0.00 0.00 43.90 4.79
182 183 3.056678 ATTGATGACAATGCTTTTGCGGA 60.057 39.130 0.00 0.00 43.90 5.54
183 184 3.255725 ATTGATGACAATGCTTTTGCGG 58.744 40.909 0.00 0.00 43.90 5.69
184 185 3.921630 TGATTGATGACAATGCTTTTGCG 59.078 39.130 0.00 0.00 45.30 4.85
185 186 4.092383 GGTGATTGATGACAATGCTTTTGC 59.908 41.667 0.00 0.00 45.30 3.68
186 187 5.231702 TGGTGATTGATGACAATGCTTTTG 58.768 37.500 0.00 0.00 45.30 2.44
187 188 5.471556 TGGTGATTGATGACAATGCTTTT 57.528 34.783 0.00 0.00 45.30 2.27
188 189 5.471556 TTGGTGATTGATGACAATGCTTT 57.528 34.783 0.00 0.00 45.30 3.51
189 190 5.471556 TTTGGTGATTGATGACAATGCTT 57.528 34.783 0.00 0.00 45.30 3.91
190 191 5.011329 AGTTTTGGTGATTGATGACAATGCT 59.989 36.000 0.00 0.00 45.30 3.79
191 192 5.232463 AGTTTTGGTGATTGATGACAATGC 58.768 37.500 0.00 0.00 45.30 3.56
192 193 7.596494 AGTAGTTTTGGTGATTGATGACAATG 58.404 34.615 0.00 0.00 45.30 2.82
194 195 7.390440 CCTAGTAGTTTTGGTGATTGATGACAA 59.610 37.037 0.00 0.00 40.42 3.18
195 196 6.878923 CCTAGTAGTTTTGGTGATTGATGACA 59.121 38.462 0.00 0.00 0.00 3.58
196 197 6.316390 CCCTAGTAGTTTTGGTGATTGATGAC 59.684 42.308 0.00 0.00 0.00 3.06
197 198 6.414732 CCCTAGTAGTTTTGGTGATTGATGA 58.585 40.000 0.00 0.00 0.00 2.92
198 199 5.590259 CCCCTAGTAGTTTTGGTGATTGATG 59.410 44.000 0.00 0.00 0.00 3.07
199 200 5.491078 TCCCCTAGTAGTTTTGGTGATTGAT 59.509 40.000 0.00 0.00 0.00 2.57
200 201 4.847512 TCCCCTAGTAGTTTTGGTGATTGA 59.152 41.667 0.00 0.00 0.00 2.57
201 202 5.174037 TCCCCTAGTAGTTTTGGTGATTG 57.826 43.478 0.00 0.00 0.00 2.67
202 203 7.519347 TTATCCCCTAGTAGTTTTGGTGATT 57.481 36.000 0.00 0.00 0.00 2.57
203 204 7.519347 TTTATCCCCTAGTAGTTTTGGTGAT 57.481 36.000 0.00 0.00 0.00 3.06
204 205 6.956102 TTTATCCCCTAGTAGTTTTGGTGA 57.044 37.500 0.00 0.00 0.00 4.02
205 206 9.284968 CATATTTATCCCCTAGTAGTTTTGGTG 57.715 37.037 0.00 0.00 0.00 4.17
206 207 7.942894 GCATATTTATCCCCTAGTAGTTTTGGT 59.057 37.037 0.00 0.00 0.00 3.67
207 208 7.393515 GGCATATTTATCCCCTAGTAGTTTTGG 59.606 40.741 0.00 0.00 0.00 3.28
208 209 7.393515 GGGCATATTTATCCCCTAGTAGTTTTG 59.606 40.741 0.00 0.00 34.59 2.44
209 210 7.297348 AGGGCATATTTATCCCCTAGTAGTTTT 59.703 37.037 0.00 0.00 45.87 2.43
210 211 6.798050 AGGGCATATTTATCCCCTAGTAGTTT 59.202 38.462 0.00 0.00 45.87 2.66
211 212 6.340043 AGGGCATATTTATCCCCTAGTAGTT 58.660 40.000 0.00 0.00 45.87 2.24
212 213 5.928656 AGGGCATATTTATCCCCTAGTAGT 58.071 41.667 0.00 0.00 45.87 2.73
213 214 6.893020 AAGGGCATATTTATCCCCTAGTAG 57.107 41.667 0.00 0.00 46.99 2.57
214 215 7.181485 GTGTAAGGGCATATTTATCCCCTAGTA 59.819 40.741 0.00 0.00 46.99 1.82
215 216 6.012771 GTGTAAGGGCATATTTATCCCCTAGT 60.013 42.308 0.00 0.00 46.99 2.57
216 217 6.415573 GTGTAAGGGCATATTTATCCCCTAG 58.584 44.000 0.00 0.00 46.99 3.02
217 218 5.252164 GGTGTAAGGGCATATTTATCCCCTA 59.748 44.000 0.00 0.00 46.99 3.53
219 220 4.341487 GGTGTAAGGGCATATTTATCCCC 58.659 47.826 0.00 0.00 40.97 4.81
220 221 4.202631 TGGGTGTAAGGGCATATTTATCCC 60.203 45.833 0.00 0.00 40.36 3.85
221 222 4.993028 TGGGTGTAAGGGCATATTTATCC 58.007 43.478 0.00 0.00 0.00 2.59
222 223 6.151144 GTCATGGGTGTAAGGGCATATTTATC 59.849 42.308 0.00 0.00 0.00 1.75
223 224 6.010219 GTCATGGGTGTAAGGGCATATTTAT 58.990 40.000 0.00 0.00 0.00 1.40
224 225 5.381757 GTCATGGGTGTAAGGGCATATTTA 58.618 41.667 0.00 0.00 0.00 1.40
225 226 4.215109 GTCATGGGTGTAAGGGCATATTT 58.785 43.478 0.00 0.00 0.00 1.40
226 227 3.747388 CGTCATGGGTGTAAGGGCATATT 60.747 47.826 0.00 0.00 0.00 1.28
227 228 2.224523 CGTCATGGGTGTAAGGGCATAT 60.225 50.000 0.00 0.00 0.00 1.78
228 229 1.140052 CGTCATGGGTGTAAGGGCATA 59.860 52.381 0.00 0.00 0.00 3.14
229 230 0.107214 CGTCATGGGTGTAAGGGCAT 60.107 55.000 0.00 0.00 0.00 4.40
230 231 1.298340 CGTCATGGGTGTAAGGGCA 59.702 57.895 0.00 0.00 0.00 5.36
231 232 2.112815 GCGTCATGGGTGTAAGGGC 61.113 63.158 0.00 0.00 0.00 5.19
232 233 1.451387 GGCGTCATGGGTGTAAGGG 60.451 63.158 0.00 0.00 0.00 3.95
233 234 0.828022 TAGGCGTCATGGGTGTAAGG 59.172 55.000 0.00 0.00 0.00 2.69
234 235 2.684001 TTAGGCGTCATGGGTGTAAG 57.316 50.000 0.00 0.00 0.00 2.34
235 236 3.637911 ATTTAGGCGTCATGGGTGTAA 57.362 42.857 0.00 0.00 0.00 2.41
236 237 4.967084 ATATTTAGGCGTCATGGGTGTA 57.033 40.909 0.00 0.00 0.00 2.90
237 238 3.857157 ATATTTAGGCGTCATGGGTGT 57.143 42.857 0.00 0.00 0.00 4.16
238 239 4.894784 AGTATATTTAGGCGTCATGGGTG 58.105 43.478 0.00 0.00 0.00 4.61
239 240 4.321750 CGAGTATATTTAGGCGTCATGGGT 60.322 45.833 0.00 0.00 0.00 4.51
273 274 1.676006 CGGGCAAGATTTTAATCGGCT 59.324 47.619 16.20 0.00 40.35 5.52
276 277 3.420839 AAGCGGGCAAGATTTTAATCG 57.579 42.857 0.00 0.00 40.35 3.34
295 296 2.484558 GCGAGGGCGGGAAAAATAA 58.515 52.632 0.00 0.00 38.16 1.40
396 413 0.187117 TGGGGACAAGCCAACATCAA 59.813 50.000 0.00 0.00 38.95 2.57
397 414 0.539438 GTGGGGACAAGCCAACATCA 60.539 55.000 0.00 0.00 46.06 3.07
399 416 1.228862 GGTGGGGACAAGCCAACAT 60.229 57.895 0.00 0.00 46.06 2.71
400 417 2.197324 GGTGGGGACAAGCCAACA 59.803 61.111 0.00 0.00 46.06 3.33
402 419 4.278513 CCGGTGGGGACAAGCCAA 62.279 66.667 0.00 0.00 46.06 4.52
523 555 0.825010 CAAAGAAGCAGTGGCCACCT 60.825 55.000 32.29 20.14 42.56 4.00
536 569 2.038269 GCCGACCATCGCCAAAGAA 61.038 57.895 0.00 0.00 38.82 2.52
576 609 3.258228 GTTTCCTAGCTCTCTTGCTGTC 58.742 50.000 0.00 0.00 43.87 3.51
579 612 1.205893 CGGTTTCCTAGCTCTCTTGCT 59.794 52.381 0.00 0.00 46.11 3.91
582 615 1.473278 CGTCGGTTTCCTAGCTCTCTT 59.527 52.381 0.00 0.00 0.00 2.85
611 644 2.432628 CTCCTTGGTGACGGCGAC 60.433 66.667 16.62 8.59 0.00 5.19
630 663 2.268298 TCCTTTTCTTCATCTACGCGC 58.732 47.619 5.73 0.00 0.00 6.86
635 668 4.289672 AGTGGCCTTCCTTTTCTTCATCTA 59.710 41.667 3.32 0.00 0.00 1.98
689 723 0.617413 ATGGATGGCCGGAGATGATC 59.383 55.000 5.05 0.00 36.79 2.92
716 750 9.419297 CCATGATTTTCATAATTTATGGAGCAG 57.581 33.333 14.80 6.43 34.28 4.24
772 807 7.497249 AGAATACCTACTGCAGCTTCTTTATTG 59.503 37.037 15.27 0.00 0.00 1.90
777 812 6.155393 ACTTAGAATACCTACTGCAGCTTCTT 59.845 38.462 15.27 0.00 0.00 2.52
947 4153 2.350772 CCTTGTCTCGTGTGGAATTTGC 60.351 50.000 0.00 0.00 0.00 3.68
965 4171 1.760029 GATTCTCTCGCTTCTCCCCTT 59.240 52.381 0.00 0.00 0.00 3.95
981 4187 4.276926 CCCATTTCTTTCCTCGATGGATTC 59.723 45.833 4.72 0.00 45.68 2.52
1281 4580 1.519455 CGACCGGACCAGATTCTGC 60.519 63.158 9.46 0.00 0.00 4.26
1341 4670 0.104304 CCAAGAACTCGTATCCCCCG 59.896 60.000 0.00 0.00 0.00 5.73
1430 5168 2.542550 TCCATTGGAGGAACCTACGAA 58.457 47.619 0.00 0.00 39.86 3.85
1453 5191 1.270147 GGTCCGCGCCTATATCAAACT 60.270 52.381 0.00 0.00 0.00 2.66
1462 5200 3.458163 CAGAAGGGTCCGCGCCTA 61.458 66.667 0.00 0.00 0.00 3.93
1465 5203 4.388499 TTCCAGAAGGGTCCGCGC 62.388 66.667 0.00 0.00 38.11 6.86
1480 5218 2.427506 CCCACTAACTGCAAGGACTTC 58.572 52.381 0.00 0.00 39.30 3.01
1485 5223 1.004745 ACATCCCCACTAACTGCAAGG 59.995 52.381 0.00 0.00 39.30 3.61
1495 5233 1.084018 AAATCCCACACATCCCCACT 58.916 50.000 0.00 0.00 0.00 4.00
1505 5245 5.398236 TGGGTCAAATTAGAAAATCCCACA 58.602 37.500 0.00 0.00 38.70 4.17
1562 5340 4.884164 GGGAATACCAGAACATCCTTCTTG 59.116 45.833 0.00 0.00 39.85 3.02
1683 5490 2.172293 CCTCTTCTTCCTCCCCTGAATG 59.828 54.545 0.00 0.00 0.00 2.67
1741 5548 6.367161 AGTATAGAGAGGAAGTTACCAGGAC 58.633 44.000 0.00 0.00 0.00 3.85
1790 5599 8.234136 AGTTGCAATGAAATGATATCATCAGT 57.766 30.769 18.44 10.64 43.53 3.41
1811 5620 8.602328 CATCTGAGCAGTAGAAAGAATAAGTTG 58.398 37.037 0.00 0.00 0.00 3.16
1822 5631 3.388552 TCTCCCATCTGAGCAGTAGAA 57.611 47.619 0.00 0.00 32.22 2.10
1850 5743 0.251341 GAAACCACCAGTGAGGGCAT 60.251 55.000 0.00 0.00 43.89 4.40
1877 5770 2.161486 GCTGTCGGACGAGCATGTC 61.161 63.158 20.29 0.04 38.17 3.06
1949 5848 6.373774 CCATTATAGAGGGCATTCACTTCATC 59.626 42.308 0.00 0.00 0.00 2.92
1974 5875 6.401581 CCGAGCACAAGAAAGAGAATTTACTC 60.402 42.308 0.00 0.00 37.19 2.59
2022 5926 3.699894 CGCTCAGGTGCAGTCCCT 61.700 66.667 0.00 0.00 0.00 4.20
2023 5927 2.646175 TACGCTCAGGTGCAGTCCC 61.646 63.158 0.00 0.00 0.00 4.46
2024 5928 1.446272 GTACGCTCAGGTGCAGTCC 60.446 63.158 0.00 0.00 0.00 3.85
2025 5929 1.446272 GGTACGCTCAGGTGCAGTC 60.446 63.158 0.00 0.00 0.00 3.51
2026 5930 1.908793 AGGTACGCTCAGGTGCAGT 60.909 57.895 0.00 0.00 0.00 4.40
2027 5931 1.446792 CAGGTACGCTCAGGTGCAG 60.447 63.158 0.00 0.00 0.00 4.41
2028 5932 1.468506 TTCAGGTACGCTCAGGTGCA 61.469 55.000 0.00 0.00 0.00 4.57
2029 5933 1.014564 GTTCAGGTACGCTCAGGTGC 61.015 60.000 0.00 0.00 0.00 5.01
2030 5934 0.732880 CGTTCAGGTACGCTCAGGTG 60.733 60.000 0.00 0.00 34.45 4.00
2031 5935 1.585006 CGTTCAGGTACGCTCAGGT 59.415 57.895 0.00 0.00 34.45 4.00
2032 5936 4.478195 CGTTCAGGTACGCTCAGG 57.522 61.111 0.00 0.00 34.45 3.86
2038 5942 1.153706 ATTCGGGCGTTCAGGTACG 60.154 57.895 0.00 0.00 44.09 3.67
2047 6173 2.168936 TGGTAATAAGACATTCGGGCGT 59.831 45.455 0.00 0.00 0.00 5.68
2049 6175 5.638234 GTCTATGGTAATAAGACATTCGGGC 59.362 44.000 0.00 0.00 0.00 6.13
2118 6244 9.308000 TGTTTGAGAATGTAACTCCCAAATATT 57.692 29.630 0.00 0.00 0.00 1.28
2162 6288 1.070786 GAACGACTGGGGCACTGAA 59.929 57.895 0.00 0.00 0.00 3.02
2236 6362 7.930865 GGTTGAAGAGCTTACATCATCTAAGAT 59.069 37.037 0.00 0.00 0.00 2.40
2238 6364 7.044181 TGGTTGAAGAGCTTACATCATCTAAG 58.956 38.462 0.00 0.00 0.00 2.18
2239 6365 6.946340 TGGTTGAAGAGCTTACATCATCTAA 58.054 36.000 0.00 0.00 0.00 2.10
2240 6366 6.544928 TGGTTGAAGAGCTTACATCATCTA 57.455 37.500 0.00 0.00 0.00 1.98
2241 6367 5.426689 TGGTTGAAGAGCTTACATCATCT 57.573 39.130 0.00 0.00 0.00 2.90
2242 6368 5.819379 TCATGGTTGAAGAGCTTACATCATC 59.181 40.000 0.00 0.00 0.00 2.92
2243 6369 5.748402 TCATGGTTGAAGAGCTTACATCAT 58.252 37.500 0.00 0.00 0.00 2.45
2244 6370 5.164620 TCATGGTTGAAGAGCTTACATCA 57.835 39.130 0.00 0.00 0.00 3.07
2256 6382 4.241590 GTGCATTCACTTCATGGTTGAA 57.758 40.909 0.00 6.91 40.03 2.69
2285 6413 6.681777 AGCACGAAAAAGAGAATTTATTGCT 58.318 32.000 0.00 0.00 35.08 3.91
2289 6417 5.411669 ACCGAGCACGAAAAAGAGAATTTAT 59.588 36.000 4.70 0.00 42.66 1.40
2292 6420 3.139077 ACCGAGCACGAAAAAGAGAATT 58.861 40.909 4.70 0.00 42.66 2.17
2301 6429 1.595794 GAAACTGAACCGAGCACGAAA 59.404 47.619 4.70 0.00 42.66 3.46
2302 6430 1.214367 GAAACTGAACCGAGCACGAA 58.786 50.000 4.70 0.00 42.66 3.85
2303 6431 0.103390 TGAAACTGAACCGAGCACGA 59.897 50.000 4.70 0.00 42.66 4.35
2304 6432 0.508641 CTGAAACTGAACCGAGCACG 59.491 55.000 0.00 0.00 39.43 5.34
2340 6468 1.946984 AAAGGACGTATGGGAGGTCA 58.053 50.000 0.00 0.00 43.45 4.02
2350 6478 6.037172 GTGATAGTCTACGGTAAAAGGACGTA 59.963 42.308 0.00 0.00 41.53 3.57
2352 6480 5.163723 TGTGATAGTCTACGGTAAAAGGACG 60.164 44.000 0.00 0.00 32.86 4.79
2354 6482 6.660521 TCTTGTGATAGTCTACGGTAAAAGGA 59.339 38.462 0.00 0.00 0.00 3.36
2390 6518 4.608269 TCATGGGATAGTCAATTGGCAAA 58.392 39.130 13.47 0.00 0.00 3.68
2393 6521 7.318141 CAAATATCATGGGATAGTCAATTGGC 58.682 38.462 0.50 0.50 39.29 4.52
2394 6522 7.833786 CCAAATATCATGGGATAGTCAATTGG 58.166 38.462 5.42 0.00 39.29 3.16
2407 6535 7.720957 TGAGAATGTAACTCCCAAATATCATGG 59.279 37.037 0.00 1.34 37.71 3.66
2426 6554 6.971184 GCTTACTGTGGAAATGATTGAGAATG 59.029 38.462 0.00 0.00 0.00 2.67
2432 6560 6.017400 ACAAGCTTACTGTGGAAATGATTG 57.983 37.500 0.00 0.00 0.00 2.67
2435 6563 6.770785 ACTAAACAAGCTTACTGTGGAAATGA 59.229 34.615 0.00 0.00 0.00 2.57
2436 6564 6.857964 CACTAAACAAGCTTACTGTGGAAATG 59.142 38.462 0.00 0.00 0.00 2.32
2444 6572 2.488153 GGGGCACTAAACAAGCTTACTG 59.512 50.000 0.00 0.00 0.00 2.74
2445 6573 2.107552 TGGGGCACTAAACAAGCTTACT 59.892 45.455 0.00 0.00 0.00 2.24
2446 6574 2.488153 CTGGGGCACTAAACAAGCTTAC 59.512 50.000 0.00 0.00 0.00 2.34
2520 6648 9.953565 ATAGTACTTTCCACTGTTTAATTGCTA 57.046 29.630 0.00 0.00 0.00 3.49
2619 6747 7.442364 TCATGGTAAGAGAACTTCTGTTTCAAG 59.558 37.037 6.50 4.36 35.91 3.02
2712 6848 5.065731 GTCCTCTAACTTGAGCATGGATTTG 59.934 44.000 0.00 0.00 33.02 2.32
2733 6869 5.104610 AGGTATGATGGATGATATGCAGTCC 60.105 44.000 0.00 0.00 32.88 3.85
3188 7332 7.988710 GTGCCACACAAGACAAGAGAATCTAC 61.989 46.154 0.00 0.00 38.40 2.59
3206 7350 1.024271 GAAGTCTGCTTTGTGCCACA 58.976 50.000 0.00 0.00 42.00 4.17
3211 7355 6.036953 GGATCTATTGAGAAGTCTGCTTTGTG 59.963 42.308 0.00 0.00 34.61 3.33
3220 7364 9.691362 GTATTCTTCAGGATCTATTGAGAAGTC 57.309 37.037 0.00 0.00 34.61 3.01
3304 7450 2.496679 TGGAGAAGGAGATAAGGGGG 57.503 55.000 0.00 0.00 0.00 5.40
3346 7493 8.421002 AGTCTGTTTTAAGGCATTGTTTTATGT 58.579 29.630 0.00 0.00 0.00 2.29
3347 7494 8.702438 CAGTCTGTTTTAAGGCATTGTTTTATG 58.298 33.333 0.00 0.00 0.00 1.90
3349 7496 8.001881 TCAGTCTGTTTTAAGGCATTGTTTTA 57.998 30.769 0.00 0.00 0.00 1.52
3350 7497 6.872920 TCAGTCTGTTTTAAGGCATTGTTTT 58.127 32.000 0.00 0.00 0.00 2.43
3354 7501 5.830912 TGTTCAGTCTGTTTTAAGGCATTG 58.169 37.500 0.00 0.00 0.00 2.82
3356 7503 6.449698 CATTGTTCAGTCTGTTTTAAGGCAT 58.550 36.000 0.00 0.00 0.00 4.40
3357 7504 5.735922 GCATTGTTCAGTCTGTTTTAAGGCA 60.736 40.000 0.00 0.00 0.00 4.75
3359 7506 5.010012 AGGCATTGTTCAGTCTGTTTTAAGG 59.990 40.000 0.00 0.00 0.00 2.69
3360 7507 6.076981 AGGCATTGTTCAGTCTGTTTTAAG 57.923 37.500 0.00 0.00 0.00 1.85
3361 7508 6.463995 AAGGCATTGTTCAGTCTGTTTTAA 57.536 33.333 0.00 0.00 0.00 1.52
3362 7509 7.575414 TTAAGGCATTGTTCAGTCTGTTTTA 57.425 32.000 0.00 0.00 0.00 1.52
3363 7510 6.463995 TTAAGGCATTGTTCAGTCTGTTTT 57.536 33.333 0.00 0.00 0.00 2.43
3398 7646 4.392445 GCACTCTGCATCATCTTATCCATC 59.608 45.833 0.00 0.00 44.26 3.51
3679 7930 1.134250 GTCCATCCCTCTTCCAGAAGC 60.134 57.143 2.38 0.00 38.28 3.86
3707 7958 6.754702 ATCATGAAGAGAATGTCAAAGTGG 57.245 37.500 0.00 0.00 0.00 4.00
3763 8014 2.575532 TGAGCTCCTGAAACAAAGTGG 58.424 47.619 12.15 0.00 0.00 4.00
3914 8166 6.479001 TCAGAAGTACAGCTACAAAAGACAAC 59.521 38.462 0.00 0.00 0.00 3.32
3970 8223 3.418684 TCCTTACTCCTGCCTGAAAAC 57.581 47.619 0.00 0.00 0.00 2.43
4149 8410 4.762289 AATACGAGGGAGCAGAAATTCT 57.238 40.909 0.00 0.00 0.00 2.40
4169 8434 6.935240 ACCAAGAATGATATCCGAGGATAA 57.065 37.500 15.02 1.42 40.07 1.75
4194 8459 8.577296 GCAAGATAATCCATCTGTAGTACAGTA 58.423 37.037 25.83 15.16 46.03 2.74
4195 8460 7.437748 GCAAGATAATCCATCTGTAGTACAGT 58.562 38.462 25.83 13.23 46.03 3.55
4197 8462 6.239600 GGGCAAGATAATCCATCTGTAGTACA 60.240 42.308 2.36 2.36 43.56 2.90
4198 8463 6.014156 AGGGCAAGATAATCCATCTGTAGTAC 60.014 42.308 0.00 0.00 43.56 2.73
4231 8496 9.553064 AAGATAATTAGTATGCCAAGTCTCAAG 57.447 33.333 0.00 0.00 0.00 3.02
4254 8555 9.003658 GTTCAAATGTTTATCCAGAGAGAAAGA 57.996 33.333 0.00 0.00 34.02 2.52
4277 8578 7.511959 AGTGGGAAACTTTATTTCTGAGTTC 57.488 36.000 0.00 0.00 34.57 3.01
4296 8597 6.824305 AATCACAGAAAATTGACTAGTGGG 57.176 37.500 0.00 0.00 0.00 4.61
4335 8639 6.032094 TGTCAGTGCTAAACGTAGTATTAGC 58.968 40.000 18.50 18.50 45.00 3.09
4337 8641 7.381766 TCTGTCAGTGCTAAACGTAGTATTA 57.618 36.000 0.00 0.00 45.00 0.98
4351 8656 2.996621 GGTGAGTGTAATCTGTCAGTGC 59.003 50.000 0.00 0.00 0.00 4.40
4495 8800 2.543031 CGAACTCTTGTCCACGACTTCA 60.543 50.000 0.00 0.00 33.15 3.02
4542 8847 3.772025 AGACTCATGGAAGAAATCGAGGT 59.228 43.478 0.00 0.00 0.00 3.85
4564 8869 1.151810 AGGGCCCTTCTCCAAGTCA 60.152 57.895 22.28 0.00 0.00 3.41
4596 8901 1.135373 TGCTCGAAGAAAGGTAGCTCG 60.135 52.381 0.00 0.00 34.09 5.03
4648 8953 4.100498 TCAGATGATAGCAAGTCAGCATCA 59.900 41.667 0.00 0.00 36.88 3.07
4940 9310 7.344352 ACATCTTCTATTCTGTAGCTTCCTTCT 59.656 37.037 0.00 0.00 0.00 2.85
4974 9344 9.745018 ACAGTATCCCAATAATTCTTCATATGG 57.255 33.333 2.13 0.00 0.00 2.74
5309 9710 5.183713 TGGAGAAGTGCAAGTTTCCATATTG 59.816 40.000 6.15 0.00 34.08 1.90
5315 9716 1.882623 CCTGGAGAAGTGCAAGTTTCC 59.117 52.381 0.00 0.00 31.38 3.13
5427 9857 8.522830 TGAGAAGAAATTGGGATATCAACAAAC 58.477 33.333 13.80 9.65 0.00 2.93
5438 9868 5.010282 GCCTAAACTGAGAAGAAATTGGGA 58.990 41.667 0.00 0.00 0.00 4.37
5504 9935 2.296471 CCTGAACAACCGAGAGTAGTGT 59.704 50.000 0.00 0.00 0.00 3.55
5525 9956 7.648142 TGCATTGCTTTTACTATAGTAATGGC 58.352 34.615 26.41 26.41 41.69 4.40
5623 10055 1.075601 TGTTTCAGGAGGCCCTTGAT 58.924 50.000 0.00 0.00 42.02 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.