Multiple sequence alignment - TraesCS2B01G088300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G088300 chr2B 100.000 5489 0 0 1 5489 49902690 49897202 0.000000e+00 10137.0
1 TraesCS2B01G088300 chr2B 82.725 2848 417 46 1099 3908 39341004 39338194 0.000000e+00 2464.0
2 TraesCS2B01G088300 chr2B 82.849 1790 257 28 2143 3908 39184633 39186396 0.000000e+00 1559.0
3 TraesCS2B01G088300 chr2B 92.944 907 63 1 4532 5437 780018344 780019250 0.000000e+00 1319.0
4 TraesCS2B01G088300 chr2B 81.261 1649 274 29 2282 3908 38034384 38036019 0.000000e+00 1301.0
5 TraesCS2B01G088300 chr2B 80.932 1652 280 22 2282 3908 37677759 37679400 0.000000e+00 1273.0
6 TraesCS2B01G088300 chr2B 82.349 1405 233 10 2282 3680 38074070 38075465 0.000000e+00 1206.0
7 TraesCS2B01G088300 chr2B 90.557 413 37 2 1869 2280 49900684 49900273 3.740000e-151 545.0
8 TraesCS2B01G088300 chr2B 90.557 413 37 2 2007 2418 49900822 49900411 3.740000e-151 545.0
9 TraesCS2B01G088300 chr2B 84.000 525 81 3 3924 4445 39338210 39337686 8.210000e-138 501.0
10 TraesCS2B01G088300 chr2B 74.392 1152 230 40 886 2008 37676784 37677899 3.040000e-117 433.0
11 TraesCS2B01G088300 chr2B 79.725 582 108 9 1433 2008 38033947 38034524 3.960000e-111 412.0
12 TraesCS2B01G088300 chr2B 80.962 499 87 6 3924 4417 38036003 38036498 6.670000e-104 388.0
13 TraesCS2B01G088300 chr2B 81.573 445 72 8 1707 2146 39184474 39184913 5.230000e-95 359.0
14 TraesCS2B01G088300 chr2B 83.951 243 32 5 1 243 39183586 39183821 5.530000e-55 226.0
15 TraesCS2B01G088300 chr2B 76.923 351 75 5 1433 1779 38073431 38073779 1.560000e-45 195.0
16 TraesCS2B01G088300 chr2B 90.179 112 10 1 1 111 39341635 39341524 1.590000e-30 145.0
17 TraesCS2B01G088300 chr2B 86.486 74 10 0 4399 4472 39335810 39335737 1.270000e-11 82.4
18 TraesCS2B01G088300 chr2D 96.138 2149 61 6 1 2142 30450748 30448615 0.000000e+00 3489.0
19 TraesCS2B01G088300 chr2D 97.166 1764 48 2 2145 3907 30448888 30447126 0.000000e+00 2979.0
20 TraesCS2B01G088300 chr2D 84.461 1789 247 21 2143 3908 22510595 22508815 0.000000e+00 1735.0
21 TraesCS2B01G088300 chr2D 82.171 1391 232 10 2282 3664 22820228 22818846 0.000000e+00 1181.0
22 TraesCS2B01G088300 chr2D 93.092 608 41 1 3924 4531 30447141 30446535 0.000000e+00 889.0
23 TraesCS2B01G088300 chr2D 77.859 1233 192 48 702 1896 22439846 22441035 0.000000e+00 689.0
24 TraesCS2B01G088300 chr2D 78.482 1041 178 27 1118 2146 22511322 22510316 1.670000e-179 640.0
25 TraesCS2B01G088300 chr2D 85.169 445 66 0 3924 4368 22508831 22508387 1.800000e-124 457.0
26 TraesCS2B01G088300 chr2D 91.667 96 7 1 1 95 22439568 22439663 1.240000e-26 132.0
27 TraesCS2B01G088300 chr2A 84.939 2118 292 17 1809 3908 24173901 24176009 0.000000e+00 2119.0
28 TraesCS2B01G088300 chr2A 84.707 1007 142 10 2138 3136 24308666 24307664 0.000000e+00 996.0
29 TraesCS2B01G088300 chr2A 77.739 1141 171 47 723 1822 24172786 24173884 1.680000e-174 623.0
30 TraesCS2B01G088300 chr2A 78.252 492 57 26 1 460 24172312 24172785 2.520000e-68 270.0
31 TraesCS2B01G088300 chr2A 85.646 209 25 3 3485 3688 34406309 34406517 1.200000e-51 215.0
32 TraesCS2B01G088300 chr3B 92.585 917 64 4 4522 5436 792119547 792120461 0.000000e+00 1314.0
33 TraesCS2B01G088300 chr3B 92.341 914 65 5 4525 5436 792158834 792159744 0.000000e+00 1295.0
34 TraesCS2B01G088300 chr3B 92.013 914 68 5 4525 5436 792245084 792245994 0.000000e+00 1279.0
35 TraesCS2B01G088300 chr6B 92.613 907 62 2 4532 5437 715187280 715186378 0.000000e+00 1299.0
36 TraesCS2B01G088300 chr6B 92.282 907 67 3 4531 5436 239281360 239282264 0.000000e+00 1284.0
37 TraesCS2B01G088300 chr6B 91.784 925 69 6 4532 5450 703296243 703297166 0.000000e+00 1280.0
38 TraesCS2B01G088300 chrUn 92.503 907 67 1 4532 5437 58385296 58386202 0.000000e+00 1297.0
39 TraesCS2B01G088300 chrUn 92.503 907 67 1 4532 5437 402065775 402066681 0.000000e+00 1297.0
40 TraesCS2B01G088300 chr7B 79.927 1096 177 21 1060 2146 744137055 744138116 0.000000e+00 765.0
41 TraesCS2B01G088300 chr7B 86.905 672 86 2 2143 2813 744137837 744138507 0.000000e+00 752.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G088300 chr2B 49897202 49902690 5488 True 3742.333333 10137 93.704667 1 5489 3 chr2B.!!$R2 5488
1 TraesCS2B01G088300 chr2B 780018344 780019250 906 False 1319.000000 1319 92.944000 4532 5437 1 chr2B.!!$F1 905
2 TraesCS2B01G088300 chr2B 37676784 37679400 2616 False 853.000000 1273 77.662000 886 3908 2 chr2B.!!$F2 3022
3 TraesCS2B01G088300 chr2B 39335737 39341635 5898 True 798.100000 2464 85.847500 1 4472 4 chr2B.!!$R1 4471
4 TraesCS2B01G088300 chr2B 39183586 39186396 2810 False 714.666667 1559 82.791000 1 3908 3 chr2B.!!$F5 3907
5 TraesCS2B01G088300 chr2B 38073431 38075465 2034 False 700.500000 1206 79.636000 1433 3680 2 chr2B.!!$F4 2247
6 TraesCS2B01G088300 chr2B 38033947 38036498 2551 False 700.333333 1301 80.649333 1433 4417 3 chr2B.!!$F3 2984
7 TraesCS2B01G088300 chr2D 30446535 30450748 4213 True 2452.333333 3489 95.465333 1 4531 3 chr2D.!!$R3 4530
8 TraesCS2B01G088300 chr2D 22818846 22820228 1382 True 1181.000000 1181 82.171000 2282 3664 1 chr2D.!!$R1 1382
9 TraesCS2B01G088300 chr2D 22508387 22511322 2935 True 944.000000 1735 82.704000 1118 4368 3 chr2D.!!$R2 3250
10 TraesCS2B01G088300 chr2D 22439568 22441035 1467 False 410.500000 689 84.763000 1 1896 2 chr2D.!!$F1 1895
11 TraesCS2B01G088300 chr2A 24172312 24176009 3697 False 1004.000000 2119 80.310000 1 3908 3 chr2A.!!$F2 3907
12 TraesCS2B01G088300 chr2A 24307664 24308666 1002 True 996.000000 996 84.707000 2138 3136 1 chr2A.!!$R1 998
13 TraesCS2B01G088300 chr3B 792119547 792120461 914 False 1314.000000 1314 92.585000 4522 5436 1 chr3B.!!$F1 914
14 TraesCS2B01G088300 chr3B 792158834 792159744 910 False 1295.000000 1295 92.341000 4525 5436 1 chr3B.!!$F2 911
15 TraesCS2B01G088300 chr3B 792245084 792245994 910 False 1279.000000 1279 92.013000 4525 5436 1 chr3B.!!$F3 911
16 TraesCS2B01G088300 chr6B 715186378 715187280 902 True 1299.000000 1299 92.613000 4532 5437 1 chr6B.!!$R1 905
17 TraesCS2B01G088300 chr6B 239281360 239282264 904 False 1284.000000 1284 92.282000 4531 5436 1 chr6B.!!$F1 905
18 TraesCS2B01G088300 chr6B 703296243 703297166 923 False 1280.000000 1280 91.784000 4532 5450 1 chr6B.!!$F2 918
19 TraesCS2B01G088300 chrUn 58385296 58386202 906 False 1297.000000 1297 92.503000 4532 5437 1 chrUn.!!$F1 905
20 TraesCS2B01G088300 chrUn 402065775 402066681 906 False 1297.000000 1297 92.503000 4532 5437 1 chrUn.!!$F2 905
21 TraesCS2B01G088300 chr7B 744137055 744138507 1452 False 758.500000 765 83.416000 1060 2813 2 chr7B.!!$F1 1753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
875 992 0.251253 TGGCCATCAGTGCATGTTGA 60.251 50.0 0.0 0.0 31.32 3.18 F
1944 2732 0.037590 TTATTTGCACTCCCACGCCT 59.962 50.0 0.0 0.0 0.00 5.52 F
1945 2733 0.037590 TATTTGCACTCCCACGCCTT 59.962 50.0 0.0 0.0 0.00 4.35 F
2224 3294 0.179020 TTGCACCTCCACACCTTGAG 60.179 55.0 0.0 0.0 0.00 3.02 F
2226 3296 0.685097 GCACCTCCACACCTTGAGTA 59.315 55.0 0.0 0.0 0.00 2.59 F
4074 5316 0.729116 CATGGCAGTTAGCTCGGTTG 59.271 55.0 0.0 0.0 44.79 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2009 2797 0.095935 CTCAAACGCAATCCTCGCAG 59.904 55.00 0.00 0.0 0.00 5.18 R
3874 5116 1.131638 TCCCCATCTCCTTCGGAATG 58.868 55.00 0.00 0.0 0.00 2.67 R
3927 5169 5.682234 TGAGAGACTTGATATGGCTCAAA 57.318 39.13 0.00 0.0 34.86 2.69 R
4198 5440 1.648467 GCAACGGGATCTGAACTGGC 61.648 60.00 0.00 0.0 0.00 4.85 R
4230 5472 0.038744 CACCAGGTGCATTTCCTCCT 59.961 55.00 6.67 0.0 32.37 3.69 R
5139 8309 0.916086 TATCCGGGATGGCAAGTGTT 59.084 50.00 19.82 0.0 37.80 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 3.202906 GCAGTCAAGTCCACAAAGTGTA 58.797 45.455 0.00 0.00 0.00 2.90
91 97 1.442769 AGTGCTTAATGGTGCAGTCG 58.557 50.000 0.00 0.00 38.31 4.18
321 423 5.327091 CAGCAAGTTCTCAAATTACATCCG 58.673 41.667 0.00 0.00 0.00 4.18
460 570 3.245229 ACCAACTGGATTAGACCATGCAA 60.245 43.478 1.86 0.00 39.34 4.08
467 577 3.314635 GGATTAGACCATGCAAAGCTGAG 59.685 47.826 0.00 0.00 0.00 3.35
516 626 6.901615 TCCAGGAATCAGACCCTAAATAAA 57.098 37.500 0.00 0.00 0.00 1.40
553 667 3.444742 GCATGTCATGATGAAGGAAACCA 59.555 43.478 17.24 0.00 0.00 3.67
649 764 5.596845 TGTTTAAATCTGTTCAAACCCAGC 58.403 37.500 0.00 0.00 31.38 4.85
841 958 1.810151 GATTAGTGCTTGGCCGTGAAA 59.190 47.619 0.00 0.00 0.00 2.69
875 992 0.251253 TGGCCATCAGTGCATGTTGA 60.251 50.000 0.00 0.00 31.32 3.18
1032 1210 7.119387 GCCTAGGGATGGCTAAACATAAATAT 58.881 38.462 11.72 0.00 46.38 1.28
1033 1211 8.272173 GCCTAGGGATGGCTAAACATAAATATA 58.728 37.037 11.72 0.00 46.38 0.86
1199 1377 2.158449 GCACTCTGAACTCCATGTTTCG 59.842 50.000 0.00 0.00 39.30 3.46
1242 1441 2.995872 GCAGAGAGCGTCCCTCGTT 61.996 63.158 0.00 0.00 45.54 3.85
1255 1454 4.551388 GTCCCTCGTTGATATTAGCTCTG 58.449 47.826 0.00 0.00 0.00 3.35
1347 1546 1.628340 TCGTGGAAAGGGATCACATGT 59.372 47.619 0.00 0.00 0.00 3.21
1501 1736 7.610865 GCTTCAGCTACTAAATATCTCAGGAT 58.389 38.462 0.00 0.00 38.21 3.24
1668 1930 5.923733 AGTATCTCGACCTCAGTTTCAAT 57.076 39.130 0.00 0.00 0.00 2.57
1855 2361 6.159299 AGTCATGTATTCATCTCAGGTCTG 57.841 41.667 0.00 0.00 31.15 3.51
1936 2724 2.360165 CCCAGCATCCTTATTTGCACTC 59.640 50.000 0.00 0.00 41.35 3.51
1937 2725 2.360165 CCAGCATCCTTATTTGCACTCC 59.640 50.000 0.00 0.00 41.35 3.85
1938 2726 2.360165 CAGCATCCTTATTTGCACTCCC 59.640 50.000 0.00 0.00 41.35 4.30
1939 2727 2.025037 AGCATCCTTATTTGCACTCCCA 60.025 45.455 0.00 0.00 41.35 4.37
1940 2728 2.099756 GCATCCTTATTTGCACTCCCAC 59.900 50.000 0.00 0.00 38.72 4.61
1941 2729 2.107950 TCCTTATTTGCACTCCCACG 57.892 50.000 0.00 0.00 0.00 4.94
1942 2730 0.451783 CCTTATTTGCACTCCCACGC 59.548 55.000 0.00 0.00 0.00 5.34
1943 2731 0.451783 CTTATTTGCACTCCCACGCC 59.548 55.000 0.00 0.00 0.00 5.68
1944 2732 0.037590 TTATTTGCACTCCCACGCCT 59.962 50.000 0.00 0.00 0.00 5.52
1945 2733 0.037590 TATTTGCACTCCCACGCCTT 59.962 50.000 0.00 0.00 0.00 4.35
1946 2734 1.526575 ATTTGCACTCCCACGCCTTG 61.527 55.000 0.00 0.00 0.00 3.61
1947 2735 2.902423 TTTGCACTCCCACGCCTTGT 62.902 55.000 0.00 0.00 0.00 3.16
1948 2736 2.594592 GCACTCCCACGCCTTGTT 60.595 61.111 0.00 0.00 0.00 2.83
1949 2737 2.193536 GCACTCCCACGCCTTGTTT 61.194 57.895 0.00 0.00 0.00 2.83
1950 2738 0.887387 GCACTCCCACGCCTTGTTTA 60.887 55.000 0.00 0.00 0.00 2.01
1951 2739 0.872388 CACTCCCACGCCTTGTTTAC 59.128 55.000 0.00 0.00 0.00 2.01
1952 2740 0.763035 ACTCCCACGCCTTGTTTACT 59.237 50.000 0.00 0.00 0.00 2.24
1953 2741 1.142262 ACTCCCACGCCTTGTTTACTT 59.858 47.619 0.00 0.00 0.00 2.24
1954 2742 1.535462 CTCCCACGCCTTGTTTACTTG 59.465 52.381 0.00 0.00 0.00 3.16
1955 2743 0.596082 CCCACGCCTTGTTTACTTGG 59.404 55.000 0.00 0.00 0.00 3.61
1956 2744 1.600023 CCACGCCTTGTTTACTTGGA 58.400 50.000 0.00 0.00 0.00 3.53
1957 2745 2.159382 CCACGCCTTGTTTACTTGGAT 58.841 47.619 0.00 0.00 0.00 3.41
1958 2746 2.161609 CCACGCCTTGTTTACTTGGATC 59.838 50.000 0.00 0.00 0.00 3.36
1959 2747 3.074412 CACGCCTTGTTTACTTGGATCT 58.926 45.455 0.00 0.00 0.00 2.75
1960 2748 3.502211 CACGCCTTGTTTACTTGGATCTT 59.498 43.478 0.00 0.00 0.00 2.40
1961 2749 4.023193 CACGCCTTGTTTACTTGGATCTTT 60.023 41.667 0.00 0.00 0.00 2.52
1962 2750 4.215613 ACGCCTTGTTTACTTGGATCTTTC 59.784 41.667 0.00 0.00 0.00 2.62
1963 2751 4.215399 CGCCTTGTTTACTTGGATCTTTCA 59.785 41.667 0.00 0.00 0.00 2.69
1964 2752 5.617751 CGCCTTGTTTACTTGGATCTTTCAG 60.618 44.000 0.00 0.00 0.00 3.02
1965 2753 5.473504 GCCTTGTTTACTTGGATCTTTCAGA 59.526 40.000 0.00 0.00 0.00 3.27
1966 2754 6.568653 GCCTTGTTTACTTGGATCTTTCAGAC 60.569 42.308 0.00 0.00 0.00 3.51
1967 2755 6.486657 CCTTGTTTACTTGGATCTTTCAGACA 59.513 38.462 0.00 0.00 0.00 3.41
1968 2756 7.013274 CCTTGTTTACTTGGATCTTTCAGACAA 59.987 37.037 0.00 0.00 0.00 3.18
1969 2757 7.259290 TGTTTACTTGGATCTTTCAGACAAC 57.741 36.000 0.00 0.00 0.00 3.32
1970 2758 6.262273 TGTTTACTTGGATCTTTCAGACAACC 59.738 38.462 0.00 0.00 0.00 3.77
1971 2759 4.437682 ACTTGGATCTTTCAGACAACCA 57.562 40.909 0.00 0.00 0.00 3.67
1972 2760 4.137543 ACTTGGATCTTTCAGACAACCAC 58.862 43.478 0.00 0.00 29.64 4.16
1973 2761 4.141390 ACTTGGATCTTTCAGACAACCACT 60.141 41.667 0.00 0.00 29.64 4.00
1974 2762 4.437682 TGGATCTTTCAGACAACCACTT 57.562 40.909 0.00 0.00 0.00 3.16
1975 2763 4.136796 TGGATCTTTCAGACAACCACTTG 58.863 43.478 0.00 0.00 0.00 3.16
1976 2764 3.057946 GGATCTTTCAGACAACCACTTGC 60.058 47.826 0.00 0.00 0.00 4.01
1977 2765 2.997980 TCTTTCAGACAACCACTTGCA 58.002 42.857 0.00 0.00 0.00 4.08
1978 2766 3.351740 TCTTTCAGACAACCACTTGCAA 58.648 40.909 0.00 0.00 0.00 4.08
1979 2767 3.378112 TCTTTCAGACAACCACTTGCAAG 59.622 43.478 24.84 24.84 0.00 4.01
1980 2768 1.679139 TCAGACAACCACTTGCAAGG 58.321 50.000 29.18 16.69 0.00 3.61
1981 2769 0.670162 CAGACAACCACTTGCAAGGG 59.330 55.000 29.18 25.96 0.00 3.95
1982 2770 1.109323 AGACAACCACTTGCAAGGGC 61.109 55.000 29.18 13.94 41.68 5.19
1998 2786 6.986904 GCAAGGGCATATACCTATAAACTC 57.013 41.667 0.00 0.00 37.35 3.01
1999 2787 6.472887 GCAAGGGCATATACCTATAAACTCA 58.527 40.000 0.00 0.00 37.35 3.41
2000 2788 7.112779 GCAAGGGCATATACCTATAAACTCAT 58.887 38.462 0.00 0.00 37.35 2.90
2001 2789 7.281100 GCAAGGGCATATACCTATAAACTCATC 59.719 40.741 0.00 0.00 37.35 2.92
2002 2790 8.543774 CAAGGGCATATACCTATAAACTCATCT 58.456 37.037 0.00 0.00 37.35 2.90
2003 2791 8.686739 AGGGCATATACCTATAAACTCATCTT 57.313 34.615 0.00 0.00 36.32 2.40
2004 2792 8.543774 AGGGCATATACCTATAAACTCATCTTG 58.456 37.037 0.00 0.00 36.32 3.02
2005 2793 7.770897 GGGCATATACCTATAAACTCATCTTGG 59.229 40.741 0.00 0.00 0.00 3.61
2006 2794 8.540388 GGCATATACCTATAAACTCATCTTGGA 58.460 37.037 0.00 0.00 0.00 3.53
2007 2795 9.944376 GCATATACCTATAAACTCATCTTGGAA 57.056 33.333 0.00 0.00 0.00 3.53
2010 2798 6.893020 ACCTATAAACTCATCTTGGAACCT 57.107 37.500 0.00 0.00 0.00 3.50
2011 2799 6.653989 ACCTATAAACTCATCTTGGAACCTG 58.346 40.000 0.00 0.00 0.00 4.00
2012 2800 5.529060 CCTATAAACTCATCTTGGAACCTGC 59.471 44.000 0.00 0.00 0.00 4.85
2013 2801 1.813513 AACTCATCTTGGAACCTGCG 58.186 50.000 0.00 0.00 0.00 5.18
2014 2802 0.976641 ACTCATCTTGGAACCTGCGA 59.023 50.000 0.00 0.00 0.00 5.10
2015 2803 1.066573 ACTCATCTTGGAACCTGCGAG 60.067 52.381 0.00 0.00 0.00 5.03
2016 2804 0.250234 TCATCTTGGAACCTGCGAGG 59.750 55.000 0.00 1.16 42.49 4.63
2017 2805 0.250234 CATCTTGGAACCTGCGAGGA 59.750 55.000 8.91 0.00 37.67 3.71
2018 2806 1.134280 CATCTTGGAACCTGCGAGGAT 60.134 52.381 8.91 0.00 37.67 3.24
2019 2807 0.984230 TCTTGGAACCTGCGAGGATT 59.016 50.000 8.91 0.96 37.67 3.01
2020 2808 1.089920 CTTGGAACCTGCGAGGATTG 58.910 55.000 8.91 0.00 37.67 2.67
2029 2817 2.456000 GCGAGGATTGCGTTTGAGA 58.544 52.632 0.00 0.00 34.63 3.27
2030 2818 1.009829 GCGAGGATTGCGTTTGAGAT 58.990 50.000 0.00 0.00 34.63 2.75
2031 2819 1.004504 GCGAGGATTGCGTTTGAGATC 60.005 52.381 0.00 0.00 34.63 2.75
2032 2820 1.594862 CGAGGATTGCGTTTGAGATCC 59.405 52.381 0.00 0.00 38.65 3.36
2033 2821 2.632377 GAGGATTGCGTTTGAGATCCA 58.368 47.619 4.27 0.00 40.39 3.41
2034 2822 3.009723 GAGGATTGCGTTTGAGATCCAA 58.990 45.455 4.27 0.00 40.39 3.53
2035 2823 3.624777 AGGATTGCGTTTGAGATCCAAT 58.375 40.909 4.27 0.00 40.39 3.16
2036 2824 4.780815 AGGATTGCGTTTGAGATCCAATA 58.219 39.130 4.27 0.00 40.39 1.90
2037 2825 5.192927 AGGATTGCGTTTGAGATCCAATAA 58.807 37.500 4.27 0.00 40.39 1.40
2038 2826 5.652014 AGGATTGCGTTTGAGATCCAATAAA 59.348 36.000 4.27 0.00 40.39 1.40
2039 2827 6.322201 AGGATTGCGTTTGAGATCCAATAAAT 59.678 34.615 4.27 0.00 40.39 1.40
2040 2828 6.980397 GGATTGCGTTTGAGATCCAATAAATT 59.020 34.615 0.00 0.00 38.32 1.82
2041 2829 7.043192 GGATTGCGTTTGAGATCCAATAAATTG 60.043 37.037 0.00 0.00 38.32 2.32
2042 2830 6.507958 TGCGTTTGAGATCCAATAAATTGA 57.492 33.333 4.25 0.00 40.14 2.57
2043 2831 6.554419 TGCGTTTGAGATCCAATAAATTGAG 58.446 36.000 4.25 0.00 40.14 3.02
2044 2832 6.150976 TGCGTTTGAGATCCAATAAATTGAGT 59.849 34.615 4.25 0.00 40.14 3.41
2045 2833 6.470235 GCGTTTGAGATCCAATAAATTGAGTG 59.530 38.462 4.25 0.00 40.14 3.51
2046 2834 6.968904 CGTTTGAGATCCAATAAATTGAGTGG 59.031 38.462 2.57 2.57 40.14 4.00
2047 2835 7.362056 CGTTTGAGATCCAATAAATTGAGTGGT 60.362 37.037 9.13 0.00 40.14 4.16
2048 2836 8.956426 GTTTGAGATCCAATAAATTGAGTGGTA 58.044 33.333 9.13 0.00 40.14 3.25
2049 2837 8.737168 TTGAGATCCAATAAATTGAGTGGTAG 57.263 34.615 9.13 0.00 40.14 3.18
2050 2838 6.767902 TGAGATCCAATAAATTGAGTGGTAGC 59.232 38.462 9.13 0.00 40.14 3.58
2051 2839 6.662755 AGATCCAATAAATTGAGTGGTAGCA 58.337 36.000 9.13 0.00 40.14 3.49
2052 2840 7.293073 AGATCCAATAAATTGAGTGGTAGCAT 58.707 34.615 9.13 0.00 40.14 3.79
2053 2841 6.942532 TCCAATAAATTGAGTGGTAGCATC 57.057 37.500 9.13 0.00 40.14 3.91
2054 2842 5.827797 TCCAATAAATTGAGTGGTAGCATCC 59.172 40.000 9.13 0.00 40.14 3.51
2055 2843 5.010012 CCAATAAATTGAGTGGTAGCATCCC 59.990 44.000 0.68 0.00 40.14 3.85
2056 2844 3.737559 AAATTGAGTGGTAGCATCCCA 57.262 42.857 0.00 0.00 0.00 4.37
2057 2845 3.287867 AATTGAGTGGTAGCATCCCAG 57.712 47.619 0.00 0.00 31.13 4.45
2058 2846 0.253044 TTGAGTGGTAGCATCCCAGC 59.747 55.000 0.00 0.00 31.13 4.85
2059 2847 0.909133 TGAGTGGTAGCATCCCAGCA 60.909 55.000 0.00 0.00 36.85 4.41
2060 2848 0.471617 GAGTGGTAGCATCCCAGCAT 59.528 55.000 0.00 0.00 36.85 3.79
2061 2849 0.471617 AGTGGTAGCATCCCAGCATC 59.528 55.000 0.00 0.00 36.85 3.91
2062 2850 0.536006 GTGGTAGCATCCCAGCATCC 60.536 60.000 0.00 0.00 36.85 3.51
2063 2851 0.695462 TGGTAGCATCCCAGCATCCT 60.695 55.000 0.00 0.00 36.85 3.24
2064 2852 0.475906 GGTAGCATCCCAGCATCCTT 59.524 55.000 0.00 0.00 36.85 3.36
2065 2853 1.699634 GGTAGCATCCCAGCATCCTTA 59.300 52.381 0.00 0.00 36.85 2.69
2066 2854 2.307098 GGTAGCATCCCAGCATCCTTAT 59.693 50.000 0.00 0.00 36.85 1.73
2067 2855 3.245052 GGTAGCATCCCAGCATCCTTATT 60.245 47.826 0.00 0.00 36.85 1.40
2068 2856 3.607490 AGCATCCCAGCATCCTTATTT 57.393 42.857 0.00 0.00 36.85 1.40
2069 2857 3.228453 AGCATCCCAGCATCCTTATTTG 58.772 45.455 0.00 0.00 36.85 2.32
2070 2858 2.288640 GCATCCCAGCATCCTTATTTGC 60.289 50.000 0.00 0.00 39.17 3.68
2071 2859 2.824689 TCCCAGCATCCTTATTTGCA 57.175 45.000 0.00 0.00 41.35 4.08
2072 2860 2.378038 TCCCAGCATCCTTATTTGCAC 58.622 47.619 0.00 0.00 41.35 4.57
2073 2861 2.025037 TCCCAGCATCCTTATTTGCACT 60.025 45.455 0.00 0.00 41.35 4.40
2078 2866 4.082081 CAGCATCCTTATTTGCACTTCCAA 60.082 41.667 0.00 0.00 41.35 3.53
2120 3190 2.172505 TCAGACAACCTCTTGCAAGGAA 59.827 45.455 25.73 7.15 38.87 3.36
2148 3218 6.002653 ACCTATAAACTCATCTTGGAACCC 57.997 41.667 0.00 0.00 0.00 4.11
2168 3238 2.813779 GCGAGAATTGCGTTTGAGAT 57.186 45.000 0.00 0.00 34.63 2.75
2169 3239 2.698472 GCGAGAATTGCGTTTGAGATC 58.302 47.619 0.00 0.00 34.63 2.75
2170 3240 2.537730 GCGAGAATTGCGTTTGAGATCC 60.538 50.000 0.00 0.00 34.63 3.36
2171 3241 2.672874 CGAGAATTGCGTTTGAGATCCA 59.327 45.455 0.00 0.00 0.00 3.41
2172 3242 3.125146 CGAGAATTGCGTTTGAGATCCAA 59.875 43.478 0.00 0.00 0.00 3.53
2173 3243 4.201851 CGAGAATTGCGTTTGAGATCCAAT 60.202 41.667 0.00 0.00 34.23 3.16
2174 3244 5.006649 CGAGAATTGCGTTTGAGATCCAATA 59.993 40.000 0.00 0.00 34.23 1.90
2175 3245 6.456853 CGAGAATTGCGTTTGAGATCCAATAA 60.457 38.462 0.00 0.00 34.23 1.40
2176 3246 7.156876 AGAATTGCGTTTGAGATCCAATAAA 57.843 32.000 0.00 0.00 34.23 1.40
2177 3247 7.775120 AGAATTGCGTTTGAGATCCAATAAAT 58.225 30.769 0.00 0.00 34.23 1.40
2178 3248 8.253113 AGAATTGCGTTTGAGATCCAATAAATT 58.747 29.630 0.00 0.00 34.23 1.82
2179 3249 8.776376 AATTGCGTTTGAGATCCAATAAATTT 57.224 26.923 0.00 0.00 34.23 1.82
2180 3250 9.868277 AATTGCGTTTGAGATCCAATAAATTTA 57.132 25.926 0.00 0.00 34.23 1.40
2181 3251 8.909708 TTGCGTTTGAGATCCAATAAATTTAG 57.090 30.769 3.94 0.00 34.23 1.85
2182 3252 8.050778 TGCGTTTGAGATCCAATAAATTTAGT 57.949 30.769 3.94 0.00 34.23 2.24
2183 3253 7.967854 TGCGTTTGAGATCCAATAAATTTAGTG 59.032 33.333 16.75 16.75 34.23 2.74
2185 3255 8.458843 CGTTTGAGATCCAATAAATTTAGTGGT 58.541 33.333 32.61 23.69 46.12 4.16
2188 3258 8.677148 TGAGATCCAATAAATTTAGTGGTAGC 57.323 34.615 32.61 24.34 46.12 3.58
2189 3259 8.271458 TGAGATCCAATAAATTTAGTGGTAGCA 58.729 33.333 32.61 24.82 46.12 3.49
2190 3260 9.289782 GAGATCCAATAAATTTAGTGGTAGCAT 57.710 33.333 32.61 23.13 46.12 3.79
2191 3261 9.289782 AGATCCAATAAATTTAGTGGTAGCATC 57.710 33.333 32.61 27.60 46.12 3.91
2192 3262 7.817418 TCCAATAAATTTAGTGGTAGCATCC 57.183 36.000 32.61 0.00 46.12 3.51
2193 3263 6.775629 TCCAATAAATTTAGTGGTAGCATCCC 59.224 38.462 32.61 0.00 46.12 3.85
2194 3264 6.549364 CCAATAAATTTAGTGGTAGCATCCCA 59.451 38.462 28.48 0.00 42.32 4.37
2195 3265 7.255590 CCAATAAATTTAGTGGTAGCATCCCAG 60.256 40.741 28.48 6.24 42.32 4.45
2196 3266 2.710096 TTTAGTGGTAGCATCCCAGC 57.290 50.000 0.00 0.00 31.13 4.85
2197 3267 1.578897 TTAGTGGTAGCATCCCAGCA 58.421 50.000 0.00 0.00 36.85 4.41
2198 3268 1.806496 TAGTGGTAGCATCCCAGCAT 58.194 50.000 0.00 0.00 36.85 3.79
2199 3269 0.471617 AGTGGTAGCATCCCAGCATC 59.528 55.000 0.00 0.00 36.85 3.91
2200 3270 0.536006 GTGGTAGCATCCCAGCATCC 60.536 60.000 0.00 0.00 36.85 3.51
2201 3271 0.695462 TGGTAGCATCCCAGCATCCT 60.695 55.000 0.00 0.00 36.85 3.24
2202 3272 0.475906 GGTAGCATCCCAGCATCCTT 59.524 55.000 0.00 0.00 36.85 3.36
2203 3273 1.699634 GGTAGCATCCCAGCATCCTTA 59.300 52.381 0.00 0.00 36.85 2.69
2204 3274 2.307098 GGTAGCATCCCAGCATCCTTAT 59.693 50.000 0.00 0.00 36.85 1.73
2205 3275 3.245052 GGTAGCATCCCAGCATCCTTATT 60.245 47.826 0.00 0.00 36.85 1.40
2206 3276 3.607490 AGCATCCCAGCATCCTTATTT 57.393 42.857 0.00 0.00 36.85 1.40
2207 3277 3.228453 AGCATCCCAGCATCCTTATTTG 58.772 45.455 0.00 0.00 36.85 2.32
2208 3278 2.288640 GCATCCCAGCATCCTTATTTGC 60.289 50.000 0.00 0.00 39.17 3.68
2209 3279 2.824689 TCCCAGCATCCTTATTTGCA 57.175 45.000 0.00 0.00 41.35 4.08
2210 3280 2.378038 TCCCAGCATCCTTATTTGCAC 58.622 47.619 0.00 0.00 41.35 4.57
2211 3281 1.410153 CCCAGCATCCTTATTTGCACC 59.590 52.381 0.00 0.00 41.35 5.01
2212 3282 2.381911 CCAGCATCCTTATTTGCACCT 58.618 47.619 0.00 0.00 41.35 4.00
2213 3283 2.360165 CCAGCATCCTTATTTGCACCTC 59.640 50.000 0.00 0.00 41.35 3.85
2214 3284 2.360165 CAGCATCCTTATTTGCACCTCC 59.640 50.000 0.00 0.00 41.35 4.30
2215 3285 2.025037 AGCATCCTTATTTGCACCTCCA 60.025 45.455 0.00 0.00 41.35 3.86
2216 3286 2.099756 GCATCCTTATTTGCACCTCCAC 59.900 50.000 0.00 0.00 38.72 4.02
2217 3287 3.355378 CATCCTTATTTGCACCTCCACA 58.645 45.455 0.00 0.00 0.00 4.17
2218 3288 2.790433 TCCTTATTTGCACCTCCACAC 58.210 47.619 0.00 0.00 0.00 3.82
2219 3289 1.818674 CCTTATTTGCACCTCCACACC 59.181 52.381 0.00 0.00 0.00 4.16
2220 3290 2.555227 CCTTATTTGCACCTCCACACCT 60.555 50.000 0.00 0.00 0.00 4.00
2221 3291 2.969821 TATTTGCACCTCCACACCTT 57.030 45.000 0.00 0.00 0.00 3.50
2222 3292 1.331214 ATTTGCACCTCCACACCTTG 58.669 50.000 0.00 0.00 0.00 3.61
2223 3293 0.257328 TTTGCACCTCCACACCTTGA 59.743 50.000 0.00 0.00 0.00 3.02
2224 3294 0.179020 TTGCACCTCCACACCTTGAG 60.179 55.000 0.00 0.00 0.00 3.02
2225 3295 1.344953 TGCACCTCCACACCTTGAGT 61.345 55.000 0.00 0.00 0.00 3.41
2226 3296 0.685097 GCACCTCCACACCTTGAGTA 59.315 55.000 0.00 0.00 0.00 2.59
2227 3297 1.608283 GCACCTCCACACCTTGAGTAC 60.608 57.143 0.00 0.00 0.00 2.73
2228 3298 1.971357 CACCTCCACACCTTGAGTACT 59.029 52.381 0.00 0.00 0.00 2.73
2229 3299 2.368875 CACCTCCACACCTTGAGTACTT 59.631 50.000 0.00 0.00 0.00 2.24
2230 3300 2.368875 ACCTCCACACCTTGAGTACTTG 59.631 50.000 0.00 0.00 0.00 3.16
2231 3301 2.289694 CCTCCACACCTTGAGTACTTGG 60.290 54.545 0.00 0.00 0.00 3.61
2232 3302 2.632996 CTCCACACCTTGAGTACTTGGA 59.367 50.000 14.70 12.11 32.67 3.53
2233 3303 3.248024 TCCACACCTTGAGTACTTGGAT 58.752 45.455 14.70 3.20 29.97 3.41
2234 3304 3.260884 TCCACACCTTGAGTACTTGGATC 59.739 47.826 14.70 0.00 29.97 3.36
2235 3305 3.261897 CCACACCTTGAGTACTTGGATCT 59.738 47.826 14.70 0.00 0.00 2.75
2236 3306 4.263068 CCACACCTTGAGTACTTGGATCTT 60.263 45.833 14.70 0.00 0.00 2.40
2237 3307 5.308825 CACACCTTGAGTACTTGGATCTTT 58.691 41.667 14.70 0.00 0.00 2.52
2238 3308 5.409826 CACACCTTGAGTACTTGGATCTTTC 59.590 44.000 14.70 0.00 0.00 2.62
2239 3309 5.071788 ACACCTTGAGTACTTGGATCTTTCA 59.928 40.000 14.70 0.00 0.00 2.69
2240 3310 5.641209 CACCTTGAGTACTTGGATCTTTCAG 59.359 44.000 14.70 0.00 0.00 3.02
2241 3311 5.544176 ACCTTGAGTACTTGGATCTTTCAGA 59.456 40.000 14.70 0.00 0.00 3.27
2242 3312 5.872070 CCTTGAGTACTTGGATCTTTCAGAC 59.128 44.000 0.00 0.00 0.00 3.51
2243 3313 6.419484 TTGAGTACTTGGATCTTTCAGACA 57.581 37.500 0.00 0.00 0.00 3.41
2244 3314 6.419484 TGAGTACTTGGATCTTTCAGACAA 57.581 37.500 0.00 0.00 0.00 3.18
2245 3315 6.223852 TGAGTACTTGGATCTTTCAGACAAC 58.776 40.000 0.00 0.00 0.00 3.32
2246 3316 5.552178 AGTACTTGGATCTTTCAGACAACC 58.448 41.667 0.00 0.00 0.00 3.77
2247 3317 4.713792 ACTTGGATCTTTCAGACAACCT 57.286 40.909 0.00 0.00 0.00 3.50
2248 3318 5.825593 ACTTGGATCTTTCAGACAACCTA 57.174 39.130 0.00 0.00 0.00 3.08
2249 3319 6.380079 ACTTGGATCTTTCAGACAACCTAT 57.620 37.500 0.00 0.00 0.00 2.57
2250 3320 6.784031 ACTTGGATCTTTCAGACAACCTATT 58.216 36.000 0.00 0.00 0.00 1.73
2251 3321 6.656693 ACTTGGATCTTTCAGACAACCTATTG 59.343 38.462 0.00 0.00 41.98 1.90
2252 3322 4.943705 TGGATCTTTCAGACAACCTATTGC 59.056 41.667 0.00 0.00 39.66 3.56
2253 3323 4.943705 GGATCTTTCAGACAACCTATTGCA 59.056 41.667 0.00 0.00 39.66 4.08
2254 3324 5.415701 GGATCTTTCAGACAACCTATTGCAA 59.584 40.000 0.00 0.00 39.66 4.08
2255 3325 5.947228 TCTTTCAGACAACCTATTGCAAG 57.053 39.130 4.94 0.00 39.66 4.01
2256 3326 4.761739 TCTTTCAGACAACCTATTGCAAGG 59.238 41.667 4.94 3.72 39.66 3.61
2257 3327 4.365514 TTCAGACAACCTATTGCAAGGA 57.634 40.909 11.52 0.00 39.66 3.36
2258 3328 4.574674 TCAGACAACCTATTGCAAGGAT 57.425 40.909 11.52 0.00 39.66 3.24
2259 3329 5.692115 TCAGACAACCTATTGCAAGGATA 57.308 39.130 11.52 0.00 39.66 2.59
2260 3330 6.252599 TCAGACAACCTATTGCAAGGATAT 57.747 37.500 11.52 0.00 39.66 1.63
2261 3331 7.373617 TCAGACAACCTATTGCAAGGATATA 57.626 36.000 11.52 0.00 39.66 0.86
2262 3332 7.977818 TCAGACAACCTATTGCAAGGATATAT 58.022 34.615 11.52 0.00 39.66 0.86
2263 3333 9.100197 TCAGACAACCTATTGCAAGGATATATA 57.900 33.333 11.52 0.00 39.66 0.86
2264 3334 9.155975 CAGACAACCTATTGCAAGGATATATAC 57.844 37.037 11.52 0.00 39.66 1.47
2265 3335 8.322091 AGACAACCTATTGCAAGGATATATACC 58.678 37.037 11.52 0.00 39.66 2.73
2266 3336 8.219660 ACAACCTATTGCAAGGATATATACCT 57.780 34.615 11.52 0.00 39.66 3.08
2267 3337 9.333961 ACAACCTATTGCAAGGATATATACCTA 57.666 33.333 11.52 0.00 39.66 3.08
2359 3567 1.885887 GTGTTTGCACTTCCATGCCTA 59.114 47.619 0.00 0.00 45.50 3.93
2378 3586 5.483937 TGCCTAGAGTACTTGGATCTTTCAA 59.516 40.000 12.73 0.00 40.51 2.69
2673 3881 1.472201 CCGCACACAGCATCATCTACT 60.472 52.381 0.00 0.00 46.13 2.57
3118 4336 3.249189 TCTGGTCACCTGTGGGCC 61.249 66.667 0.00 0.00 35.63 5.80
3409 4627 4.201970 CCTCTCGAGTTTCTGAGTGTATCC 60.202 50.000 13.13 0.00 33.88 2.59
3418 4636 2.361119 TCTGAGTGTATCCGGGAATTCG 59.639 50.000 0.00 0.00 0.00 3.34
3628 4846 6.704289 ATAATTGACATCTCCCACAACATG 57.296 37.500 0.00 0.00 0.00 3.21
3815 5057 4.028131 AGGGAACTCATACACATACGGAA 58.972 43.478 0.00 0.00 32.90 4.30
3856 5098 1.627329 TCTGGCATTGACTTCTCTGCT 59.373 47.619 0.00 0.00 35.03 4.24
3874 5116 1.734465 GCTAACATGCTGTCAGGTGAC 59.266 52.381 1.14 2.99 44.97 3.67
3900 5142 2.945668 CGAAGGAGATGGGGAATTTGAC 59.054 50.000 0.00 0.00 0.00 3.18
4074 5316 0.729116 CATGGCAGTTAGCTCGGTTG 59.271 55.000 0.00 0.00 44.79 3.77
4109 5351 3.612860 GTGTTCTCTGTGGCGTACAATAG 59.387 47.826 0.00 0.00 39.20 1.73
4198 5440 2.744202 GACAACCTTAGGTCATGCACTG 59.256 50.000 3.62 0.00 33.12 3.66
4230 5472 2.902419 CGTTGCACGGAATGGCACA 61.902 57.895 0.00 0.00 40.23 4.57
4242 5484 1.459812 TGGCACAGGAGGAAATGCA 59.540 52.632 0.00 0.00 39.92 3.96
4280 5522 3.068732 CCGATCATCTACATGGTCACTGT 59.931 47.826 0.00 0.00 39.86 3.55
4290 5532 5.596836 ACATGGTCACTGTTGTTTCATTT 57.403 34.783 0.00 0.00 0.00 2.32
4432 5679 7.875554 TGTACACAACATAAGCAGATCACTTTA 59.124 33.333 6.35 0.00 31.43 1.85
4488 7657 5.452078 AAACTATGCTAGCTTTTGTTGCA 57.548 34.783 17.23 0.00 38.05 4.08
4491 7660 6.757897 ACTATGCTAGCTTTTGTTGCATTA 57.242 33.333 17.23 0.00 43.09 1.90
4492 7661 7.156876 ACTATGCTAGCTTTTGTTGCATTAA 57.843 32.000 17.23 0.00 43.09 1.40
4571 7740 2.093341 ACGTGTGGGTGTACTTCAACTT 60.093 45.455 0.00 0.00 33.62 2.66
4596 7765 0.319555 CACGTCTGGATGGTCGTTGT 60.320 55.000 0.00 0.00 34.30 3.32
4663 7832 4.468689 GTAGGACGGGGCTGGTGC 62.469 72.222 0.00 0.00 38.76 5.01
4693 7862 2.594592 GAGTTTGCCCACACGCCT 60.595 61.111 0.00 0.00 0.00 5.52
4699 7868 1.605971 TTGCCCACACGCCTCGTATA 61.606 55.000 0.00 0.00 38.32 1.47
4703 7872 0.179156 CCACACGCCTCGTATAACGT 60.179 55.000 0.00 0.00 43.14 3.99
4731 7900 1.097547 GCTATGCTGTGTGGGCGAAT 61.098 55.000 0.00 0.00 0.00 3.34
4908 8077 1.787847 AACTGCAGTTGCGCGTATC 59.212 52.632 30.66 1.70 45.83 2.24
5006 8175 2.622942 AGGTAAACACACATGGCAACTG 59.377 45.455 0.00 0.00 37.61 3.16
5092 8262 6.481976 CGGCAACTACCATAAATTAGACATGA 59.518 38.462 0.00 0.00 0.00 3.07
5139 8309 3.636300 AGAGTTGCCATGCTTTTACAACA 59.364 39.130 6.91 0.00 42.32 3.33
5204 8375 1.691976 ACTAAATCATCATCCCGCGGA 59.308 47.619 30.73 13.82 35.55 5.54
5212 8383 1.933021 TCATCCCGCGGATACCTAAT 58.067 50.000 30.73 5.10 40.98 1.73
5215 8386 0.677288 TCCCGCGGATACCTAATGTG 59.323 55.000 30.73 4.77 0.00 3.21
5233 8404 2.488355 GCTGCGCTAGGACGTGTA 59.512 61.111 9.73 0.00 34.88 2.90
5336 8508 3.057596 CACGTGTGGGCAATTCTAATGTT 60.058 43.478 7.58 0.00 0.00 2.71
5347 8519 2.779755 TCTAATGTTCGCCCACACAT 57.220 45.000 0.00 0.00 35.00 3.21
5402 8574 0.546507 TGATGTGTGGCCAGACCCTA 60.547 55.000 28.66 12.20 37.83 3.53
5438 8610 3.713963 GCGTTATCGGCGTCCATT 58.286 55.556 6.85 0.00 37.56 3.16
5439 8611 1.563173 GCGTTATCGGCGTCCATTC 59.437 57.895 6.85 0.00 37.56 2.67
5440 8612 0.874607 GCGTTATCGGCGTCCATTCT 60.875 55.000 6.85 0.00 37.56 2.40
5441 8613 0.852777 CGTTATCGGCGTCCATTCTG 59.147 55.000 6.85 0.00 0.00 3.02
5443 8615 2.755650 GTTATCGGCGTCCATTCTGAT 58.244 47.619 6.85 0.00 33.31 2.90
5445 8617 2.332063 ATCGGCGTCCATTCTGATTT 57.668 45.000 6.85 0.00 0.00 2.17
5448 8620 1.062587 CGGCGTCCATTCTGATTTGTC 59.937 52.381 0.00 0.00 0.00 3.18
5449 8621 2.083774 GGCGTCCATTCTGATTTGTCA 58.916 47.619 0.00 0.00 0.00 3.58
5451 8623 3.488047 GGCGTCCATTCTGATTTGTCATG 60.488 47.826 0.00 0.00 0.00 3.07
5452 8624 3.688272 CGTCCATTCTGATTTGTCATGC 58.312 45.455 0.00 0.00 0.00 4.06
5453 8625 3.376234 CGTCCATTCTGATTTGTCATGCT 59.624 43.478 0.00 0.00 0.00 3.79
5454 8626 4.142534 CGTCCATTCTGATTTGTCATGCTT 60.143 41.667 0.00 0.00 0.00 3.91
5455 8627 5.620654 CGTCCATTCTGATTTGTCATGCTTT 60.621 40.000 0.00 0.00 0.00 3.51
5456 8628 6.403527 CGTCCATTCTGATTTGTCATGCTTTA 60.404 38.462 0.00 0.00 0.00 1.85
5457 8629 6.749118 GTCCATTCTGATTTGTCATGCTTTAC 59.251 38.462 0.00 0.00 0.00 2.01
5458 8630 6.660521 TCCATTCTGATTTGTCATGCTTTACT 59.339 34.615 0.00 0.00 0.00 2.24
5459 8631 7.828717 TCCATTCTGATTTGTCATGCTTTACTA 59.171 33.333 0.00 0.00 0.00 1.82
5460 8632 8.461222 CCATTCTGATTTGTCATGCTTTACTAA 58.539 33.333 0.00 0.00 0.00 2.24
5461 8633 9.499585 CATTCTGATTTGTCATGCTTTACTAAG 57.500 33.333 0.00 0.00 34.36 2.18
5462 8634 7.615582 TCTGATTTGTCATGCTTTACTAAGG 57.384 36.000 0.00 0.00 31.76 2.69
5463 8635 6.094048 TCTGATTTGTCATGCTTTACTAAGGC 59.906 38.462 0.00 0.00 31.76 4.35
5464 8636 4.678509 TTTGTCATGCTTTACTAAGGCG 57.321 40.909 0.00 0.00 31.76 5.52
5465 8637 3.603158 TGTCATGCTTTACTAAGGCGA 57.397 42.857 0.00 0.00 31.76 5.54
5466 8638 3.521560 TGTCATGCTTTACTAAGGCGAG 58.478 45.455 0.00 0.00 31.76 5.03
5467 8639 3.056107 TGTCATGCTTTACTAAGGCGAGT 60.056 43.478 0.00 0.78 31.76 4.18
5468 8640 4.158949 TGTCATGCTTTACTAAGGCGAGTA 59.841 41.667 0.00 0.00 31.76 2.59
5469 8641 5.107133 GTCATGCTTTACTAAGGCGAGTAA 58.893 41.667 9.99 9.99 39.58 2.24
5470 8642 5.753921 GTCATGCTTTACTAAGGCGAGTAAT 59.246 40.000 13.52 0.10 40.66 1.89
5471 8643 6.921857 GTCATGCTTTACTAAGGCGAGTAATA 59.078 38.462 13.52 6.47 40.66 0.98
5472 8644 7.437267 GTCATGCTTTACTAAGGCGAGTAATAA 59.563 37.037 13.52 5.67 40.66 1.40
5473 8645 7.982919 TCATGCTTTACTAAGGCGAGTAATAAA 59.017 33.333 13.52 3.49 40.66 1.40
5474 8646 8.774586 CATGCTTTACTAAGGCGAGTAATAAAT 58.225 33.333 13.52 6.94 40.66 1.40
5475 8647 8.726870 TGCTTTACTAAGGCGAGTAATAAATT 57.273 30.769 13.52 0.00 40.66 1.82
5476 8648 8.823818 TGCTTTACTAAGGCGAGTAATAAATTC 58.176 33.333 13.52 3.98 40.66 2.17
5477 8649 9.043079 GCTTTACTAAGGCGAGTAATAAATTCT 57.957 33.333 13.52 0.00 40.66 2.40
5481 8653 8.209917 ACTAAGGCGAGTAATAAATTCTTTGG 57.790 34.615 0.00 0.00 0.00 3.28
5482 8654 8.044908 ACTAAGGCGAGTAATAAATTCTTTGGA 58.955 33.333 0.00 0.00 0.00 3.53
5483 8655 7.696992 AAGGCGAGTAATAAATTCTTTGGAA 57.303 32.000 0.00 0.00 35.78 3.53
5484 8656 7.321745 AGGCGAGTAATAAATTCTTTGGAAG 57.678 36.000 0.00 0.00 34.70 3.46
5485 8657 7.110155 AGGCGAGTAATAAATTCTTTGGAAGA 58.890 34.615 0.00 0.00 34.70 2.87
5486 8658 7.065923 AGGCGAGTAATAAATTCTTTGGAAGAC 59.934 37.037 0.00 0.00 37.23 3.01
5487 8659 7.187480 GCGAGTAATAAATTCTTTGGAAGACC 58.813 38.462 0.00 0.00 37.23 3.85
5488 8660 7.148306 GCGAGTAATAAATTCTTTGGAAGACCA 60.148 37.037 0.00 0.00 45.34 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 97 0.602905 CAGGACCGAACTTGGACCAC 60.603 60.000 0.00 0.00 44.98 4.16
321 423 6.238130 GGTTTTACCTTATCGCATGAGTTCTC 60.238 42.308 0.00 0.00 34.73 2.87
425 535 3.640498 TCCAGTTGGTTCATTTGATTGCA 59.360 39.130 0.00 0.00 36.34 4.08
460 570 9.618890 TTTTATCATAAGTAATGCTCTCAGCTT 57.381 29.630 0.00 0.00 42.97 3.74
492 602 7.290813 GTTTATTTAGGGTCTGATTCCTGGAT 58.709 38.462 0.00 8.16 34.75 3.41
497 607 5.762279 TGGGTTTATTTAGGGTCTGATTCC 58.238 41.667 0.00 0.00 0.00 3.01
516 626 1.843368 CATGCTCTTCCATGTTGGGT 58.157 50.000 0.00 0.00 38.32 4.51
649 764 9.669353 GTTTCAGCACATATAATAATTGAGTGG 57.331 33.333 0.00 0.00 0.00 4.00
841 958 3.668141 TGGCCAAACATGGACTATGAT 57.332 42.857 0.61 0.00 39.21 2.45
1032 1210 4.901197 TCTCCTTGCTTGTTGTGGTATA 57.099 40.909 0.00 0.00 0.00 1.47
1033 1211 3.788227 TCTCCTTGCTTGTTGTGGTAT 57.212 42.857 0.00 0.00 0.00 2.73
1034 1212 3.135712 TCTTCTCCTTGCTTGTTGTGGTA 59.864 43.478 0.00 0.00 0.00 3.25
1035 1213 2.092429 TCTTCTCCTTGCTTGTTGTGGT 60.092 45.455 0.00 0.00 0.00 4.16
1199 1377 1.578206 GAAGCAGCCCGAACAACTCC 61.578 60.000 0.00 0.00 0.00 3.85
1240 1439 4.342862 TGAGGCCAGAGCTAATATCAAC 57.657 45.455 5.01 0.00 39.73 3.18
1242 1441 6.671340 AGATTATGAGGCCAGAGCTAATATCA 59.329 38.462 5.01 0.00 39.73 2.15
1255 1454 2.071778 TGCCCAAAGATTATGAGGCC 57.928 50.000 0.00 0.00 39.72 5.19
1501 1736 8.858003 TCAAAATTATGTAAACAAGCGAACAA 57.142 26.923 0.00 0.00 0.00 2.83
1689 1954 1.066143 ACCAGCTTACCAACAGATCCG 60.066 52.381 0.00 0.00 0.00 4.18
1855 2361 3.557595 CACGCAGGTTATGGAGATTTCTC 59.442 47.826 0.00 0.00 42.14 2.87
1936 2724 0.596082 CCAAGTAAACAAGGCGTGGG 59.404 55.000 5.22 0.00 0.00 4.61
1937 2725 1.600023 TCCAAGTAAACAAGGCGTGG 58.400 50.000 5.22 0.00 33.99 4.94
1938 2726 3.074412 AGATCCAAGTAAACAAGGCGTG 58.926 45.455 0.00 0.00 0.00 5.34
1939 2727 3.418684 AGATCCAAGTAAACAAGGCGT 57.581 42.857 0.00 0.00 0.00 5.68
1940 2728 4.215399 TGAAAGATCCAAGTAAACAAGGCG 59.785 41.667 0.00 0.00 0.00 5.52
1941 2729 5.473504 TCTGAAAGATCCAAGTAAACAAGGC 59.526 40.000 0.00 0.00 38.67 4.35
1957 2745 2.997980 TGCAAGTGGTTGTCTGAAAGA 58.002 42.857 0.00 0.00 35.61 2.52
1958 2746 3.489738 CCTTGCAAGTGGTTGTCTGAAAG 60.490 47.826 24.35 0.65 35.92 2.62
1959 2747 2.426738 CCTTGCAAGTGGTTGTCTGAAA 59.573 45.455 24.35 0.00 35.92 2.69
1960 2748 2.023673 CCTTGCAAGTGGTTGTCTGAA 58.976 47.619 24.35 0.00 35.92 3.02
1961 2749 1.679139 CCTTGCAAGTGGTTGTCTGA 58.321 50.000 24.35 0.00 35.92 3.27
1962 2750 0.670162 CCCTTGCAAGTGGTTGTCTG 59.330 55.000 24.35 6.18 35.92 3.51
1963 2751 1.109323 GCCCTTGCAAGTGGTTGTCT 61.109 55.000 24.35 0.00 35.92 3.41
1964 2752 1.363807 GCCCTTGCAAGTGGTTGTC 59.636 57.895 24.35 9.04 35.92 3.18
1965 2753 1.381056 TGCCCTTGCAAGTGGTTGT 60.381 52.632 24.35 0.00 46.66 3.32
1966 2754 3.536164 TGCCCTTGCAAGTGGTTG 58.464 55.556 24.35 9.02 46.66 3.77
1975 2763 6.472887 TGAGTTTATAGGTATATGCCCTTGC 58.527 40.000 6.18 0.00 33.35 4.01
1976 2764 8.543774 AGATGAGTTTATAGGTATATGCCCTTG 58.456 37.037 6.18 0.00 33.35 3.61
1977 2765 8.686739 AGATGAGTTTATAGGTATATGCCCTT 57.313 34.615 6.18 0.00 33.35 3.95
1978 2766 8.543774 CAAGATGAGTTTATAGGTATATGCCCT 58.456 37.037 6.18 3.71 36.04 5.19
1979 2767 7.770897 CCAAGATGAGTTTATAGGTATATGCCC 59.229 40.741 6.18 0.00 0.00 5.36
1980 2768 8.540388 TCCAAGATGAGTTTATAGGTATATGCC 58.460 37.037 0.75 0.75 0.00 4.40
1981 2769 9.944376 TTCCAAGATGAGTTTATAGGTATATGC 57.056 33.333 0.00 0.00 0.00 3.14
1984 2772 9.670442 AGGTTCCAAGATGAGTTTATAGGTATA 57.330 33.333 0.00 0.00 0.00 1.47
1985 2773 8.432805 CAGGTTCCAAGATGAGTTTATAGGTAT 58.567 37.037 0.00 0.00 0.00 2.73
1986 2774 7.635089 GCAGGTTCCAAGATGAGTTTATAGGTA 60.635 40.741 0.00 0.00 0.00 3.08
1987 2775 6.653989 CAGGTTCCAAGATGAGTTTATAGGT 58.346 40.000 0.00 0.00 0.00 3.08
1988 2776 5.529060 GCAGGTTCCAAGATGAGTTTATAGG 59.471 44.000 0.00 0.00 0.00 2.57
1989 2777 5.235186 CGCAGGTTCCAAGATGAGTTTATAG 59.765 44.000 0.00 0.00 0.00 1.31
1990 2778 5.105106 TCGCAGGTTCCAAGATGAGTTTATA 60.105 40.000 0.00 0.00 0.00 0.98
1991 2779 3.941483 CGCAGGTTCCAAGATGAGTTTAT 59.059 43.478 0.00 0.00 0.00 1.40
1992 2780 3.007506 TCGCAGGTTCCAAGATGAGTTTA 59.992 43.478 0.00 0.00 0.00 2.01
1993 2781 2.154462 CGCAGGTTCCAAGATGAGTTT 58.846 47.619 0.00 0.00 0.00 2.66
1994 2782 1.347707 TCGCAGGTTCCAAGATGAGTT 59.652 47.619 0.00 0.00 0.00 3.01
1995 2783 0.976641 TCGCAGGTTCCAAGATGAGT 59.023 50.000 0.00 0.00 0.00 3.41
1996 2784 1.649664 CTCGCAGGTTCCAAGATGAG 58.350 55.000 0.00 0.00 0.00 2.90
1997 2785 0.250234 CCTCGCAGGTTCCAAGATGA 59.750 55.000 0.00 0.00 0.00 2.92
1998 2786 0.250234 TCCTCGCAGGTTCCAAGATG 59.750 55.000 2.68 0.00 36.53 2.90
1999 2787 1.207791 ATCCTCGCAGGTTCCAAGAT 58.792 50.000 2.68 0.00 36.53 2.40
2000 2788 0.984230 AATCCTCGCAGGTTCCAAGA 59.016 50.000 2.68 0.00 36.53 3.02
2001 2789 1.089920 CAATCCTCGCAGGTTCCAAG 58.910 55.000 2.68 0.00 36.53 3.61
2002 2790 0.960364 GCAATCCTCGCAGGTTCCAA 60.960 55.000 2.68 0.00 36.53 3.53
2003 2791 1.377202 GCAATCCTCGCAGGTTCCA 60.377 57.895 2.68 0.00 36.53 3.53
2004 2792 2.464459 CGCAATCCTCGCAGGTTCC 61.464 63.158 2.68 0.00 36.53 3.62
2005 2793 1.298859 AACGCAATCCTCGCAGGTTC 61.299 55.000 2.68 0.00 36.53 3.62
2006 2794 0.889186 AAACGCAATCCTCGCAGGTT 60.889 50.000 2.68 0.00 36.53 3.50
2007 2795 1.302511 AAACGCAATCCTCGCAGGT 60.303 52.632 2.68 0.00 36.53 4.00
2008 2796 1.135315 CAAACGCAATCCTCGCAGG 59.865 57.895 0.00 0.00 36.46 4.85
2009 2797 0.095935 CTCAAACGCAATCCTCGCAG 59.904 55.000 0.00 0.00 0.00 5.18
2010 2798 0.320334 TCTCAAACGCAATCCTCGCA 60.320 50.000 0.00 0.00 0.00 5.10
2011 2799 1.004504 GATCTCAAACGCAATCCTCGC 60.005 52.381 0.00 0.00 0.00 5.03
2012 2800 1.594862 GGATCTCAAACGCAATCCTCG 59.405 52.381 0.00 0.00 35.75 4.63
2013 2801 2.632377 TGGATCTCAAACGCAATCCTC 58.368 47.619 0.00 0.00 38.78 3.71
2014 2802 2.787473 TGGATCTCAAACGCAATCCT 57.213 45.000 0.00 0.00 38.78 3.24
2015 2803 5.499139 TTATTGGATCTCAAACGCAATCC 57.501 39.130 0.00 0.00 39.05 3.01
2016 2804 7.701924 TCAATTTATTGGATCTCAAACGCAATC 59.298 33.333 2.85 0.00 39.05 2.67
2017 2805 7.546358 TCAATTTATTGGATCTCAAACGCAAT 58.454 30.769 2.85 0.00 39.05 3.56
2018 2806 6.918626 TCAATTTATTGGATCTCAAACGCAA 58.081 32.000 2.85 0.00 39.05 4.85
2019 2807 6.150976 ACTCAATTTATTGGATCTCAAACGCA 59.849 34.615 2.85 0.00 39.05 5.24
2020 2808 6.470235 CACTCAATTTATTGGATCTCAAACGC 59.530 38.462 2.85 0.00 39.05 4.84
2021 2809 6.968904 CCACTCAATTTATTGGATCTCAAACG 59.031 38.462 2.85 0.00 39.05 3.60
2022 2810 7.830739 ACCACTCAATTTATTGGATCTCAAAC 58.169 34.615 3.23 0.00 39.05 2.93
2023 2811 9.177608 CTACCACTCAATTTATTGGATCTCAAA 57.822 33.333 3.23 0.00 39.05 2.69
2024 2812 7.283127 GCTACCACTCAATTTATTGGATCTCAA 59.717 37.037 3.23 0.00 38.30 3.02
2025 2813 6.767902 GCTACCACTCAATTTATTGGATCTCA 59.232 38.462 3.23 0.00 38.30 3.27
2026 2814 6.767902 TGCTACCACTCAATTTATTGGATCTC 59.232 38.462 3.23 0.00 38.30 2.75
2027 2815 6.662755 TGCTACCACTCAATTTATTGGATCT 58.337 36.000 3.23 0.00 38.30 2.75
2028 2816 6.942532 TGCTACCACTCAATTTATTGGATC 57.057 37.500 3.23 0.00 38.30 3.36
2029 2817 6.491403 GGATGCTACCACTCAATTTATTGGAT 59.509 38.462 3.23 0.00 38.30 3.41
2030 2818 5.827797 GGATGCTACCACTCAATTTATTGGA 59.172 40.000 3.23 0.00 38.30 3.53
2031 2819 5.010012 GGGATGCTACCACTCAATTTATTGG 59.990 44.000 2.85 0.00 38.30 3.16
2032 2820 5.593909 TGGGATGCTACCACTCAATTTATTG 59.406 40.000 0.00 0.00 34.53 1.90
2033 2821 5.765510 TGGGATGCTACCACTCAATTTATT 58.234 37.500 2.59 0.00 31.83 1.40
2034 2822 5.380043 CTGGGATGCTACCACTCAATTTAT 58.620 41.667 2.59 0.00 33.63 1.40
2035 2823 4.780815 CTGGGATGCTACCACTCAATTTA 58.219 43.478 2.59 0.00 33.63 1.40
2036 2824 3.624777 CTGGGATGCTACCACTCAATTT 58.375 45.455 2.59 0.00 33.63 1.82
2037 2825 2.684927 GCTGGGATGCTACCACTCAATT 60.685 50.000 2.59 0.00 33.63 2.32
2038 2826 1.133976 GCTGGGATGCTACCACTCAAT 60.134 52.381 2.59 0.00 33.63 2.57
2039 2827 0.253044 GCTGGGATGCTACCACTCAA 59.747 55.000 2.59 0.00 33.63 3.02
2040 2828 0.909133 TGCTGGGATGCTACCACTCA 60.909 55.000 2.59 0.00 33.63 3.41
2041 2829 0.471617 ATGCTGGGATGCTACCACTC 59.528 55.000 2.59 0.00 33.63 3.51
2042 2830 0.471617 GATGCTGGGATGCTACCACT 59.528 55.000 2.59 0.00 33.63 4.00
2043 2831 0.536006 GGATGCTGGGATGCTACCAC 60.536 60.000 2.59 0.00 33.63 4.16
2044 2832 0.695462 AGGATGCTGGGATGCTACCA 60.695 55.000 0.00 0.00 36.38 3.25
2045 2833 0.475906 AAGGATGCTGGGATGCTACC 59.524 55.000 0.00 0.00 0.00 3.18
2046 2834 3.710209 ATAAGGATGCTGGGATGCTAC 57.290 47.619 0.00 0.00 0.00 3.58
2047 2835 4.401022 CAAATAAGGATGCTGGGATGCTA 58.599 43.478 0.00 0.00 0.00 3.49
2048 2836 3.228453 CAAATAAGGATGCTGGGATGCT 58.772 45.455 0.00 0.00 0.00 3.79
2049 2837 2.288640 GCAAATAAGGATGCTGGGATGC 60.289 50.000 0.00 0.00 39.46 3.91
2050 2838 2.960384 TGCAAATAAGGATGCTGGGATG 59.040 45.455 0.00 0.00 42.97 3.51
2051 2839 2.961062 GTGCAAATAAGGATGCTGGGAT 59.039 45.455 0.00 0.00 42.97 3.85
2052 2840 2.025037 AGTGCAAATAAGGATGCTGGGA 60.025 45.455 0.00 0.00 42.97 4.37
2053 2841 2.381911 AGTGCAAATAAGGATGCTGGG 58.618 47.619 0.00 0.00 42.97 4.45
2054 2842 3.181483 GGAAGTGCAAATAAGGATGCTGG 60.181 47.826 0.00 0.00 42.97 4.85
2055 2843 3.444742 TGGAAGTGCAAATAAGGATGCTG 59.555 43.478 0.00 0.00 42.97 4.41
2056 2844 3.700538 TGGAAGTGCAAATAAGGATGCT 58.299 40.909 0.00 0.00 42.97 3.79
2057 2845 4.427312 CTTGGAAGTGCAAATAAGGATGC 58.573 43.478 0.00 0.00 42.86 3.91
2058 2846 4.427312 GCTTGGAAGTGCAAATAAGGATG 58.573 43.478 0.00 0.00 0.00 3.51
2059 2847 3.448660 GGCTTGGAAGTGCAAATAAGGAT 59.551 43.478 0.00 0.00 0.00 3.24
2060 2848 2.825532 GGCTTGGAAGTGCAAATAAGGA 59.174 45.455 0.00 0.00 0.00 3.36
2061 2849 2.827921 AGGCTTGGAAGTGCAAATAAGG 59.172 45.455 0.00 0.00 0.00 2.69
2062 2850 4.022068 TCAAGGCTTGGAAGTGCAAATAAG 60.022 41.667 25.92 0.00 0.00 1.73
2063 2851 3.894427 TCAAGGCTTGGAAGTGCAAATAA 59.106 39.130 25.92 0.00 0.00 1.40
2064 2852 3.495331 TCAAGGCTTGGAAGTGCAAATA 58.505 40.909 25.92 0.00 0.00 1.40
2065 2853 2.298163 CTCAAGGCTTGGAAGTGCAAAT 59.702 45.455 25.92 0.00 0.00 2.32
2066 2854 1.682854 CTCAAGGCTTGGAAGTGCAAA 59.317 47.619 25.92 3.47 0.00 3.68
2067 2855 1.321474 CTCAAGGCTTGGAAGTGCAA 58.679 50.000 25.92 4.20 0.00 4.08
2068 2856 0.183492 ACTCAAGGCTTGGAAGTGCA 59.817 50.000 25.92 4.94 0.00 4.57
2069 2857 1.807142 GTACTCAAGGCTTGGAAGTGC 59.193 52.381 25.92 20.87 0.00 4.40
2070 2858 3.409026 AGTACTCAAGGCTTGGAAGTG 57.591 47.619 25.92 13.57 0.00 3.16
2071 2859 3.744660 CAAGTACTCAAGGCTTGGAAGT 58.255 45.455 25.92 23.13 36.79 3.01
2078 2866 4.287067 TGAAAGATCCAAGTACTCAAGGCT 59.713 41.667 0.00 0.00 0.00 4.58
2162 3232 9.120538 GCTACCACTAAATTTATTGGATCTCAA 57.879 33.333 30.79 13.74 37.05 3.02
2163 3233 8.271458 TGCTACCACTAAATTTATTGGATCTCA 58.729 33.333 30.79 21.12 37.05 3.27
2164 3234 8.677148 TGCTACCACTAAATTTATTGGATCTC 57.323 34.615 30.79 19.52 37.05 2.75
2165 3235 9.289782 GATGCTACCACTAAATTTATTGGATCT 57.710 33.333 30.79 17.03 37.05 2.75
2166 3236 8.515414 GGATGCTACCACTAAATTTATTGGATC 58.485 37.037 30.79 23.35 37.05 3.36
2167 3237 7.451566 GGGATGCTACCACTAAATTTATTGGAT 59.548 37.037 30.79 18.60 37.05 3.41
2168 3238 6.775629 GGGATGCTACCACTAAATTTATTGGA 59.224 38.462 30.79 17.99 37.05 3.53
2169 3239 6.549364 TGGGATGCTACCACTAAATTTATTGG 59.451 38.462 25.31 25.31 38.86 3.16
2170 3240 7.581213 TGGGATGCTACCACTAAATTTATTG 57.419 36.000 8.25 8.25 31.83 1.90
2171 3241 6.265422 GCTGGGATGCTACCACTAAATTTATT 59.735 38.462 0.00 0.00 33.63 1.40
2172 3242 5.770162 GCTGGGATGCTACCACTAAATTTAT 59.230 40.000 0.00 0.00 33.63 1.40
2173 3243 5.130350 GCTGGGATGCTACCACTAAATTTA 58.870 41.667 0.00 0.00 33.63 1.40
2174 3244 3.954258 GCTGGGATGCTACCACTAAATTT 59.046 43.478 0.00 0.00 33.63 1.82
2175 3245 3.053693 TGCTGGGATGCTACCACTAAATT 60.054 43.478 2.59 0.00 33.63 1.82
2176 3246 2.509548 TGCTGGGATGCTACCACTAAAT 59.490 45.455 2.59 0.00 33.63 1.40
2177 3247 1.912731 TGCTGGGATGCTACCACTAAA 59.087 47.619 2.59 0.00 33.63 1.85
2178 3248 1.578897 TGCTGGGATGCTACCACTAA 58.421 50.000 2.59 0.00 33.63 2.24
2179 3249 1.694150 GATGCTGGGATGCTACCACTA 59.306 52.381 2.59 0.00 33.63 2.74
2180 3250 0.471617 GATGCTGGGATGCTACCACT 59.528 55.000 2.59 0.00 33.63 4.00
2181 3251 0.536006 GGATGCTGGGATGCTACCAC 60.536 60.000 2.59 0.00 33.63 4.16
2182 3252 0.695462 AGGATGCTGGGATGCTACCA 60.695 55.000 0.00 0.00 36.38 3.25
2183 3253 0.475906 AAGGATGCTGGGATGCTACC 59.524 55.000 0.00 0.00 0.00 3.18
2184 3254 3.710209 ATAAGGATGCTGGGATGCTAC 57.290 47.619 0.00 0.00 0.00 3.58
2185 3255 4.401022 CAAATAAGGATGCTGGGATGCTA 58.599 43.478 0.00 0.00 0.00 3.49
2186 3256 3.228453 CAAATAAGGATGCTGGGATGCT 58.772 45.455 0.00 0.00 0.00 3.79
2187 3257 2.288640 GCAAATAAGGATGCTGGGATGC 60.289 50.000 0.00 0.00 39.46 3.91
2188 3258 2.960384 TGCAAATAAGGATGCTGGGATG 59.040 45.455 0.00 0.00 42.97 3.51
2189 3259 2.961062 GTGCAAATAAGGATGCTGGGAT 59.039 45.455 0.00 0.00 42.97 3.85
2190 3260 2.378038 GTGCAAATAAGGATGCTGGGA 58.622 47.619 0.00 0.00 42.97 4.37
2191 3261 1.410153 GGTGCAAATAAGGATGCTGGG 59.590 52.381 0.00 0.00 42.97 4.45
2192 3262 2.360165 GAGGTGCAAATAAGGATGCTGG 59.640 50.000 0.00 0.00 42.97 4.85
2193 3263 2.360165 GGAGGTGCAAATAAGGATGCTG 59.640 50.000 0.00 0.00 42.97 4.41
2194 3264 2.025037 TGGAGGTGCAAATAAGGATGCT 60.025 45.455 0.00 0.00 42.97 3.79
2195 3265 2.099756 GTGGAGGTGCAAATAAGGATGC 59.900 50.000 0.00 0.00 42.86 3.91
2196 3266 3.129287 GTGTGGAGGTGCAAATAAGGATG 59.871 47.826 0.00 0.00 0.00 3.51
2197 3267 3.356290 GTGTGGAGGTGCAAATAAGGAT 58.644 45.455 0.00 0.00 0.00 3.24
2198 3268 2.554344 GGTGTGGAGGTGCAAATAAGGA 60.554 50.000 0.00 0.00 0.00 3.36
2199 3269 1.818674 GGTGTGGAGGTGCAAATAAGG 59.181 52.381 0.00 0.00 0.00 2.69
2200 3270 2.795329 AGGTGTGGAGGTGCAAATAAG 58.205 47.619 0.00 0.00 0.00 1.73
2201 3271 2.890311 CAAGGTGTGGAGGTGCAAATAA 59.110 45.455 0.00 0.00 0.00 1.40
2202 3272 2.107378 TCAAGGTGTGGAGGTGCAAATA 59.893 45.455 0.00 0.00 0.00 1.40
2203 3273 1.133513 TCAAGGTGTGGAGGTGCAAAT 60.134 47.619 0.00 0.00 0.00 2.32
2204 3274 0.257328 TCAAGGTGTGGAGGTGCAAA 59.743 50.000 0.00 0.00 0.00 3.68
2205 3275 0.179020 CTCAAGGTGTGGAGGTGCAA 60.179 55.000 0.00 0.00 0.00 4.08
2206 3276 1.344953 ACTCAAGGTGTGGAGGTGCA 61.345 55.000 0.00 0.00 35.45 4.57
2207 3277 0.685097 TACTCAAGGTGTGGAGGTGC 59.315 55.000 0.00 0.00 35.45 5.01
2208 3278 1.971357 AGTACTCAAGGTGTGGAGGTG 59.029 52.381 0.00 0.00 35.45 4.00
2209 3279 2.368875 CAAGTACTCAAGGTGTGGAGGT 59.631 50.000 0.00 0.00 35.45 3.85
2210 3280 2.289694 CCAAGTACTCAAGGTGTGGAGG 60.290 54.545 0.00 0.00 35.45 4.30
2211 3281 2.632996 TCCAAGTACTCAAGGTGTGGAG 59.367 50.000 6.17 0.00 33.07 3.86
2212 3282 2.684943 TCCAAGTACTCAAGGTGTGGA 58.315 47.619 6.17 6.17 34.52 4.02
2213 3283 3.261897 AGATCCAAGTACTCAAGGTGTGG 59.738 47.826 0.00 0.00 0.00 4.17
2214 3284 4.543590 AGATCCAAGTACTCAAGGTGTG 57.456 45.455 0.00 0.00 0.00 3.82
2215 3285 5.071788 TGAAAGATCCAAGTACTCAAGGTGT 59.928 40.000 0.00 0.00 0.00 4.16
2216 3286 5.551233 TGAAAGATCCAAGTACTCAAGGTG 58.449 41.667 0.00 0.00 0.00 4.00
2217 3287 5.544176 TCTGAAAGATCCAAGTACTCAAGGT 59.456 40.000 0.00 0.00 38.67 3.50
2218 3288 6.042638 TCTGAAAGATCCAAGTACTCAAGG 57.957 41.667 0.00 0.00 38.67 3.61
2231 3301 8.492007 TCCTTGCAATAGGTTGTCTGAAAGATC 61.492 40.741 0.00 0.00 40.04 2.75
2232 3302 6.748045 TCCTTGCAATAGGTTGTCTGAAAGAT 60.748 38.462 0.00 0.00 40.04 2.40
2233 3303 4.761739 CCTTGCAATAGGTTGTCTGAAAGA 59.238 41.667 0.00 0.00 36.80 2.52
2234 3304 4.761739 TCCTTGCAATAGGTTGTCTGAAAG 59.238 41.667 0.00 0.00 37.65 2.62
2235 3305 4.724399 TCCTTGCAATAGGTTGTCTGAAA 58.276 39.130 0.00 0.00 37.65 2.69
2236 3306 4.365514 TCCTTGCAATAGGTTGTCTGAA 57.634 40.909 0.00 0.00 37.65 3.02
2237 3307 4.574674 ATCCTTGCAATAGGTTGTCTGA 57.425 40.909 0.00 0.00 37.65 3.27
2238 3308 9.155975 GTATATATCCTTGCAATAGGTTGTCTG 57.844 37.037 0.00 0.00 37.65 3.51
2239 3309 8.322091 GGTATATATCCTTGCAATAGGTTGTCT 58.678 37.037 0.00 0.00 37.65 3.41
2240 3310 8.322091 AGGTATATATCCTTGCAATAGGTTGTC 58.678 37.037 0.00 0.00 36.63 3.18
2241 3311 8.219660 AGGTATATATCCTTGCAATAGGTTGT 57.780 34.615 0.00 0.00 36.63 3.32
2260 3330 9.670442 AGGTTCCAAGATGAGTTTATAGGTATA 57.330 33.333 0.00 0.00 0.00 1.47
2261 3331 8.432805 CAGGTTCCAAGATGAGTTTATAGGTAT 58.567 37.037 0.00 0.00 0.00 2.73
2262 3332 7.635089 GCAGGTTCCAAGATGAGTTTATAGGTA 60.635 40.741 0.00 0.00 0.00 3.08
2263 3333 6.653989 CAGGTTCCAAGATGAGTTTATAGGT 58.346 40.000 0.00 0.00 0.00 3.08
2264 3334 5.529060 GCAGGTTCCAAGATGAGTTTATAGG 59.471 44.000 0.00 0.00 0.00 2.57
2265 3335 5.235186 CGCAGGTTCCAAGATGAGTTTATAG 59.765 44.000 0.00 0.00 0.00 1.31
2266 3336 5.105106 TCGCAGGTTCCAAGATGAGTTTATA 60.105 40.000 0.00 0.00 0.00 0.98
2267 3337 3.941483 CGCAGGTTCCAAGATGAGTTTAT 59.059 43.478 0.00 0.00 0.00 1.40
2268 3338 3.007506 TCGCAGGTTCCAAGATGAGTTTA 59.992 43.478 0.00 0.00 0.00 2.01
2269 3339 2.154462 CGCAGGTTCCAAGATGAGTTT 58.846 47.619 0.00 0.00 0.00 2.66
2270 3340 1.347707 TCGCAGGTTCCAAGATGAGTT 59.652 47.619 0.00 0.00 0.00 3.01
2271 3341 0.976641 TCGCAGGTTCCAAGATGAGT 59.023 50.000 0.00 0.00 0.00 3.41
2272 3342 1.205655 TCTCGCAGGTTCCAAGATGAG 59.794 52.381 0.00 0.00 0.00 2.90
2273 3343 1.266178 TCTCGCAGGTTCCAAGATGA 58.734 50.000 0.00 0.00 0.00 2.92
2274 3344 2.099141 TTCTCGCAGGTTCCAAGATG 57.901 50.000 0.00 0.00 0.00 2.90
2275 3345 3.012518 CAATTCTCGCAGGTTCCAAGAT 58.987 45.455 0.00 0.00 0.00 2.40
2276 3346 2.426522 CAATTCTCGCAGGTTCCAAGA 58.573 47.619 0.00 0.00 0.00 3.02
2277 3347 1.135575 GCAATTCTCGCAGGTTCCAAG 60.136 52.381 0.00 0.00 0.00 3.61
2278 3348 0.881118 GCAATTCTCGCAGGTTCCAA 59.119 50.000 0.00 0.00 0.00 3.53
2279 3349 1.298157 CGCAATTCTCGCAGGTTCCA 61.298 55.000 0.00 0.00 0.00 3.53
2280 3350 1.298859 ACGCAATTCTCGCAGGTTCC 61.299 55.000 0.00 0.00 0.00 3.62
2359 3567 6.937465 GGTTTCTTGAAAGATCCAAGTACTCT 59.063 38.462 0.00 0.00 41.18 3.24
2378 3586 7.339482 GGTACATATCTTTCCAAGAGGTTTCT 58.661 38.462 0.00 0.00 41.61 2.52
2410 3618 6.349944 GCAATGAGGAACACTTTGAAGATGAT 60.350 38.462 0.00 0.00 36.50 2.45
3118 4336 8.233868 TCAAATTTGTTGTTGTCGAGGTATATG 58.766 33.333 17.47 0.00 0.00 1.78
3409 4627 2.464459 GCCTGACAGCGAATTCCCG 61.464 63.158 0.00 0.00 0.00 5.14
3418 4636 2.125350 CTCGGGAAGCCTGACAGC 60.125 66.667 0.00 0.00 33.41 4.40
3815 5057 7.651808 CCAGACATCAACATGAAAAAGTTACT 58.348 34.615 0.00 0.00 33.72 2.24
3823 5065 4.523558 TCAATGCCAGACATCAACATGAAA 59.476 37.500 0.00 0.00 38.34 2.69
3831 5073 3.262660 AGAGAAGTCAATGCCAGACATCA 59.737 43.478 7.81 0.00 38.34 3.07
3874 5116 1.131638 TCCCCATCTCCTTCGGAATG 58.868 55.000 0.00 0.00 0.00 2.67
3918 5160 7.678837 ACTTGATATGGCTCAAATTCCAAAAA 58.321 30.769 0.00 0.00 34.86 1.94
3919 5161 7.178983 AGACTTGATATGGCTCAAATTCCAAAA 59.821 33.333 0.00 0.00 34.86 2.44
3920 5162 6.664816 AGACTTGATATGGCTCAAATTCCAAA 59.335 34.615 0.00 0.00 34.86 3.28
3921 5163 6.189859 AGACTTGATATGGCTCAAATTCCAA 58.810 36.000 0.00 0.00 34.86 3.53
3922 5164 5.759059 AGACTTGATATGGCTCAAATTCCA 58.241 37.500 0.00 0.00 34.86 3.53
3923 5165 6.060788 AGAGACTTGATATGGCTCAAATTCC 58.939 40.000 0.00 0.00 34.86 3.01
3924 5166 6.765036 TGAGAGACTTGATATGGCTCAAATTC 59.235 38.462 0.00 0.00 34.86 2.17
3925 5167 6.656902 TGAGAGACTTGATATGGCTCAAATT 58.343 36.000 0.00 0.00 34.86 1.82
3926 5168 6.244552 TGAGAGACTTGATATGGCTCAAAT 57.755 37.500 0.00 0.00 34.86 2.32
3927 5169 5.682234 TGAGAGACTTGATATGGCTCAAA 57.318 39.130 0.00 0.00 34.86 2.69
3928 5170 5.682234 TTGAGAGACTTGATATGGCTCAA 57.318 39.130 0.00 0.00 38.23 3.02
3929 5171 5.883685 ATTGAGAGACTTGATATGGCTCA 57.116 39.130 0.00 0.00 0.00 4.26
3930 5172 6.541641 ACAAATTGAGAGACTTGATATGGCTC 59.458 38.462 0.00 0.00 0.00 4.70
3931 5173 6.421485 ACAAATTGAGAGACTTGATATGGCT 58.579 36.000 0.00 0.00 0.00 4.75
3932 5174 6.317140 TGACAAATTGAGAGACTTGATATGGC 59.683 38.462 0.00 0.00 0.00 4.40
3933 5175 7.854557 TGACAAATTGAGAGACTTGATATGG 57.145 36.000 0.00 0.00 0.00 2.74
3934 5176 9.552114 GTTTGACAAATTGAGAGACTTGATATG 57.448 33.333 3.49 0.00 0.00 1.78
3935 5177 9.288576 TGTTTGACAAATTGAGAGACTTGATAT 57.711 29.630 3.49 0.00 0.00 1.63
3936 5178 8.675705 TGTTTGACAAATTGAGAGACTTGATA 57.324 30.769 3.49 0.00 0.00 2.15
3937 5179 7.572523 TGTTTGACAAATTGAGAGACTTGAT 57.427 32.000 3.49 0.00 0.00 2.57
3938 5180 7.389803 TTGTTTGACAAATTGAGAGACTTGA 57.610 32.000 3.49 0.00 34.76 3.02
3939 5181 8.638685 AATTGTTTGACAAATTGAGAGACTTG 57.361 30.769 3.49 0.00 41.96 3.16
4066 5308 1.667724 CTCCAATGATGACAACCGAGC 59.332 52.381 0.00 0.00 0.00 5.03
4074 5316 3.937706 CAGAGAACACCTCCAATGATGAC 59.062 47.826 0.00 0.00 42.97 3.06
4198 5440 1.648467 GCAACGGGATCTGAACTGGC 61.648 60.000 0.00 0.00 0.00 4.85
4230 5472 0.038744 CACCAGGTGCATTTCCTCCT 59.961 55.000 6.67 0.00 32.37 3.69
4242 5484 1.866015 TCGGATCAGAATCACCAGGT 58.134 50.000 0.00 0.00 33.21 4.00
4280 5522 6.183360 CCAAAATGCCAAGACAAATGAAACAA 60.183 34.615 0.00 0.00 0.00 2.83
4410 5657 7.369803 ACTAAAGTGATCTGCTTATGTTGTG 57.630 36.000 0.00 0.00 0.00 3.33
4432 5679 9.113838 CACACATAATAGGAAAAGCAGATTACT 57.886 33.333 0.00 0.00 0.00 2.24
4492 7661 2.039418 GGAGTTGGGGAACAGCTTTTT 58.961 47.619 0.00 0.00 41.06 1.94
4498 7667 0.184933 TGTTGGGAGTTGGGGAACAG 59.815 55.000 0.00 0.00 0.00 3.16
4502 7671 1.764571 CTCGTGTTGGGAGTTGGGGA 61.765 60.000 0.00 0.00 0.00 4.81
4503 7672 1.302511 CTCGTGTTGGGAGTTGGGG 60.303 63.158 0.00 0.00 0.00 4.96
4559 7728 2.294074 GTGTGGGCAAGTTGAAGTACA 58.706 47.619 7.16 3.02 0.00 2.90
4562 7731 0.393808 ACGTGTGGGCAAGTTGAAGT 60.394 50.000 7.16 0.00 33.69 3.01
4571 7740 2.347114 CATCCAGACGTGTGGGCA 59.653 61.111 29.47 13.54 38.26 5.36
4596 7765 5.034152 GTCAAGATTCGTGCAAAAGACAAA 58.966 37.500 0.00 0.00 0.00 2.83
4731 7900 1.604604 GCTGTGTGGGCAGAAACTAA 58.395 50.000 0.00 0.00 38.70 2.24
5006 8175 1.081242 CCGCACATGGTCAAACAGC 60.081 57.895 0.00 0.00 0.00 4.40
5139 8309 0.916086 TATCCGGGATGGCAAGTGTT 59.084 50.000 19.82 0.00 37.80 3.32
5177 8347 4.279169 CGGGATGATGATTTAGTTGCCATT 59.721 41.667 0.00 0.00 0.00 3.16
5233 8404 3.199764 GCACGAAGCAAAAATGCCT 57.800 47.368 0.00 0.00 44.79 4.75
5336 8508 2.266372 CGGGTTATGTGTGGGCGA 59.734 61.111 0.00 0.00 0.00 5.54
5363 8535 1.048160 TGTGTGGTGTGAGCAGGAGA 61.048 55.000 0.00 0.00 0.00 3.71
5402 8574 3.372795 CCACACGTATGGGCGTTAT 57.627 52.632 4.49 0.00 43.83 1.89
5438 8610 6.094048 GCCTTAGTAAAGCATGACAAATCAGA 59.906 38.462 0.00 0.00 38.57 3.27
5439 8611 6.261118 GCCTTAGTAAAGCATGACAAATCAG 58.739 40.000 0.00 0.00 38.57 2.90
5440 8612 5.163764 CGCCTTAGTAAAGCATGACAAATCA 60.164 40.000 0.00 0.00 39.83 2.57
5441 8613 5.064707 TCGCCTTAGTAAAGCATGACAAATC 59.935 40.000 0.00 0.00 0.00 2.17
5443 8615 4.320023 TCGCCTTAGTAAAGCATGACAAA 58.680 39.130 0.00 0.00 0.00 2.83
5445 8617 3.056107 ACTCGCCTTAGTAAAGCATGACA 60.056 43.478 0.00 0.00 0.00 3.58
5448 8620 7.709269 TTATTACTCGCCTTAGTAAAGCATG 57.291 36.000 4.44 0.00 43.30 4.06
5449 8621 8.904099 ATTTATTACTCGCCTTAGTAAAGCAT 57.096 30.769 4.44 0.00 43.30 3.79
5451 8623 9.043079 AGAATTTATTACTCGCCTTAGTAAAGC 57.957 33.333 5.39 0.00 43.30 3.51
5455 8627 9.321562 CCAAAGAATTTATTACTCGCCTTAGTA 57.678 33.333 0.00 0.00 35.03 1.82
5456 8628 8.044908 TCCAAAGAATTTATTACTCGCCTTAGT 58.955 33.333 0.00 0.00 35.03 2.24
5457 8629 8.433421 TCCAAAGAATTTATTACTCGCCTTAG 57.567 34.615 0.00 0.00 35.03 2.18
5458 8630 8.795842 TTCCAAAGAATTTATTACTCGCCTTA 57.204 30.769 0.00 0.00 35.03 2.69
5459 8631 7.610305 TCTTCCAAAGAATTTATTACTCGCCTT 59.390 33.333 0.00 0.00 35.03 4.35
5460 8632 7.065923 GTCTTCCAAAGAATTTATTACTCGCCT 59.934 37.037 0.00 0.00 39.67 5.52
5461 8633 7.187480 GTCTTCCAAAGAATTTATTACTCGCC 58.813 38.462 0.00 0.00 39.67 5.54
5462 8634 7.148306 TGGTCTTCCAAAGAATTTATTACTCGC 60.148 37.037 0.00 0.00 41.25 5.03
5463 8635 8.263940 TGGTCTTCCAAAGAATTTATTACTCG 57.736 34.615 0.00 0.00 41.25 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.