AutoCloner

Multiple sequence alignment - TraesCS2B01G087900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G087900	chr2B	100.000	2639	0	0	1	2639	49606701	49604063	0.000000e+00	4874.0
1	TraesCS2B01G087900	chr2B	95.652	460	12	2	1	459	48808281	48807829	0.000000e+00	732.0
2	TraesCS2B01G087900	chr2B	81.602	674	59	32	1768	2406	66034326	66034969	5.070000e-137	497.0
3	TraesCS2B01G087900	chr2B	84.435	469	37	13	1781	2240	775418958	775418517	1.880000e-116	429.0
4	TraesCS2B01G087900	chr2B	81.749	526	54	22	1781	2296	128531780	128532273	4.090000e-108	401.0
5	TraesCS2B01G087900	chr2B	83.529	255	18	6	2409	2639	66035047	66035301	1.590000e-52	217.0
6	TraesCS2B01G087900	chr2B	83.529	255	18	8	2409	2639	708390548	708390294	1.590000e-52	217.0
7	TraesCS2B01G087900	chr2B	88.525	122	14	0	2247	2368	708390755	708390634	5.890000e-32	148.0
8	TraesCS2B01G087900	chr2D	85.063	1995	187	59	459	2406	588720667	588718737	0.000000e+00	1930.0
9	TraesCS2B01G087900	chr2D	92.797	236	11	4	2409	2639	588718659	588718425	1.170000e-88	337.0
10	TraesCS2B01G087900	chr7A	89.872	1333	79	25	1081	2406	629879083	629880366	0.000000e+00	1663.0
11	TraesCS2B01G087900	chr7A	90.265	339	20	8	717	1050	629878755	629879085	5.220000e-117	431.0
12	TraesCS2B01G087900	chr7A	94.828	232	11	1	2408	2639	629880450	629880680	6.940000e-96	361.0
13	TraesCS2B01G087900	chr7A	84.766	256	29	3	468	715	629865966	629866219	5.640000e-62	248.0
14	TraesCS2B01G087900	chr7A	78.165	316	34	17	1459	1773	28508898	28508617	4.520000e-38	169.0
15	TraesCS2B01G087900	chr7A	77.848	316	35	17	1459	1773	28513673	28513392	2.100000e-36	163.0
16	TraesCS2B01G087900	chr7A	77.287	317	35	19	1459	1773	218921233	218921514	4.550000e-33	152.0
17	TraesCS2B01G087900	chr6B	80.991	1352	179	47	930	2240	172277328	172276014	0.000000e+00	1002.0
18	TraesCS2B01G087900	chr6B	91.777	377	15	6	1	377	712149889	712149529	6.520000e-141	510.0
19	TraesCS2B01G087900	chr6B	85.771	253	13	4	2410	2639	172275736	172275484	2.030000e-61	246.0
20	TraesCS2B01G087900	chr6B	91.566	166	11	3	2243	2406	172275979	172275815	2.640000e-55	226.0
21	TraesCS2B01G087900	chr4A	97.840	463	8	2	1	461	663307334	663307796	0.000000e+00	798.0
22	TraesCS2B01G087900	chr4A	98.043	460	8	1	1	459	663309025	663309484	0.000000e+00	798.0
23	TraesCS2B01G087900	chr4A	82.249	676	69	32	1768	2406	734876058	734875397	1.070000e-148	536.0
24	TraesCS2B01G087900	chr4A	88.000	425	36	11	1768	2186	736119571	736119156	3.050000e-134	488.0
25	TraesCS2B01G087900	chr4A	82.745	255	20	6	2409	2639	714216208	714215954	3.440000e-49	206.0
26	TraesCS2B01G087900	chr4A	89.375	160	16	1	2247	2406	714216444	714216286	1.600000e-47	200.0
27	TraesCS2B01G087900	chr4A	90.385	104	9	1	2537	2639	734875075	734874972	4.580000e-28	135.0
28	TraesCS2B01G087900	chr4A	90.385	104	9	1	2537	2639	736113370	736113267	4.580000e-28	135.0
29	TraesCS2B01G087900	chr1B	96.976	463	13	1	1	463	669890057	669890518	0.000000e+00	776.0
30	TraesCS2B01G087900	chr1B	83.512	467	43	12	1781	2240	189697205	189697644	3.160000e-109	405.0
31	TraesCS2B01G087900	chr4B	95.354	452	19	1	1	452	25444641	25444192	0.000000e+00	717.0
32	TraesCS2B01G087900	chr4B	91.845	466	23	3	1	465	390860048	390860499	1.030000e-178	636.0
33	TraesCS2B01G087900	chr4B	77.802	928	130	47	1132	2031	42544343	42543464	1.090000e-138	503.0
34	TraesCS2B01G087900	chr7B	94.678	451	8	5	1	450	587963667	587964102	0.000000e+00	686.0
35	TraesCS2B01G087900	chr7B	97.561	41	0	1	1768	1807	586259919	586259959	4.710000e-08	69.4
36	TraesCS2B01G087900	chr5B	92.918	466	10	7	1	459	426615112	426615561	0.000000e+00	656.0
37	TraesCS2B01G087900	chr5B	97.753	267	6	0	1	267	426618297	426618563	6.660000e-126	460.0
38	TraesCS2B01G087900	chr1A	77.397	1168	180	46	457	1592	584839376	584838261	3.730000e-173	617.0
39	TraesCS2B01G087900	chr1A	97.561	41	0	1	1768	1807	581294183	581294223	4.710000e-08	69.4
40	TraesCS2B01G087900	chr3B	88.511	470	21	12	1	468	828682053	828681615	2.990000e-149	538.0
41	TraesCS2B01G087900	chr3B	88.602	465	20	10	1	463	828654155	828653722	3.870000e-148	534.0
42	TraesCS2B01G087900	chr3B	85.315	143	17	4	2265	2406	714501314	714501453	7.610000e-31	145.0
43	TraesCS2B01G087900	chr7D	90.123	162	14	2	2243	2403	422436082	422436242	2.660000e-50	209.0
44	TraesCS2B01G087900	chr3D	80.919	283	29	14	1768	2031	91726151	91726427	1.600000e-47	200.0
45	TraesCS2B01G087900	chrUn	85.827	127	12	1	1647	1773	141697470	141697350	2.130000e-26	130.0
46	TraesCS2B01G087900	chrUn	85.827	127	12	1	1647	1773	362765294	362765174	2.130000e-26	130.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G087900	chr2B	49604063	49606701	2638	True	4874.000000	4874	100.000000	1	2639	1	chr2B.!!$R2	2638
1	TraesCS2B01G087900	chr2B	66034326	66035301	975	False	357.000000	497	82.565500	1768	2639	2	chr2B.!!$F2	871
2	TraesCS2B01G087900	chr2D	588718425	588720667	2242	True	1133.500000	1930	88.930000	459	2639	2	chr2D.!!$R1	2180
3	TraesCS2B01G087900	chr7A	629878755	629880680	1925	False	818.333333	1663	91.655000	717	2639	3	chr7A.!!$F3	1922
4	TraesCS2B01G087900	chr6B	172275484	172277328	1844	True	491.333333	1002	86.109333	930	2639	3	chr6B.!!$R2	1709
5	TraesCS2B01G087900	chr4A	663307334	663309484	2150	False	798.000000	798	97.941500	1	461	2	chr4A.!!$F1	460
6	TraesCS2B01G087900	chr4A	734874972	734876058	1086	True	335.500000	536	86.317000	1768	2639	2	chr4A.!!$R4	871
7	TraesCS2B01G087900	chr4B	42543464	42544343	879	True	503.000000	503	77.802000	1132	2031	1	chr4B.!!$R2	899
8	TraesCS2B01G087900	chr5B	426615112	426618563	3451	False	558.000000	656	95.335500	1	459	2	chr5B.!!$F1	458
9	TraesCS2B01G087900	chr1A	584838261	584839376	1115	True	617.000000	617	77.397000	457	1592	1	chr1A.!!$R1	1135

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
796	4048	0.253394	CTCCTCCCTTTCCCCTCCTT	60.253	60.0	0.0	0.0	0.0	3.36	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1698	5057	0.87439	TGGAACTCACTTGCGATTGC	59.126	50.0	0.0	0.0	43.2	3.56	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
353	3578	1.423921	AGAAAATCGTTGGGAGGTGGT	59.576	47.619	0.00	0.00	0.00	4.16
416	3642	3.128068	GCGAGGTGGGACGAAAATAAAAT	59.872	43.478	0.00	0.00	0.00	1.82
503	3729	6.523840	AGCAAACATAAATTCCTTCAAAGCA	58.476	32.000	0.00	0.00	0.00	3.91
506	3732	7.282916	CAAACATAAATTCCTTCAAAGCAACG	58.717	34.615	0.00	0.00	0.00	4.10
508	3734	2.050477	AATTCCTTCAAAGCAACGCG	57.950	45.000	3.53	3.53	0.00	6.01
513	3739	1.532921	CCTTCAAAGCAACGCGACAAA	60.533	47.619	15.93	0.00	0.00	2.83
514	3740	1.775208	CTTCAAAGCAACGCGACAAAG	59.225	47.619	15.93	0.81	0.00	2.77
532	3758	5.850614	ACAAAGACTGTACACGGAATAACT	58.149	37.500	0.00	0.00	36.10	2.24
539	3765	4.603131	TGTACACGGAATAACTAGGACCT	58.397	43.478	0.00	0.00	0.00	3.85
542	3768	3.129988	ACACGGAATAACTAGGACCTTCG	59.870	47.826	0.00	0.00	0.00	3.79
543	3769	3.379372	CACGGAATAACTAGGACCTTCGA	59.621	47.826	0.00	0.00	0.00	3.71
566	3792	9.004717	TCGAATCAAATAAACCTAAACACATCA	57.995	29.630	0.00	0.00	0.00	3.07
571	3797	9.521841	TCAAATAAACCTAAACACATCATACCA	57.478	29.630	0.00	0.00	0.00	3.25
580	3806	8.733458	CCTAAACACATCATACCATCCATATTG	58.267	37.037	0.00	0.00	0.00	1.90
585	3811	3.584834	TCATACCATCCATATTGCGTCG	58.415	45.455	0.00	0.00	0.00	5.12
593	3819	1.067974	CCATATTGCGTCGGTGGTCTA	59.932	52.381	0.00	0.00	0.00	2.59
601	3827	2.159338	GCGTCGGTGGTCTACAATCTAA	60.159	50.000	0.00	0.00	0.00	2.10
604	3830	5.734220	GCGTCGGTGGTCTACAATCTAAATA	60.734	44.000	0.00	0.00	0.00	1.40
612	3838	9.148104	GTGGTCTACAATCTAAATAAACGTCTT	57.852	33.333	0.00	0.00	0.00	3.01
629	3855	5.003804	ACGTCTTGGATTAAATGTTCTGCT	58.996	37.500	0.00	0.00	0.00	4.24
645	3871	2.804167	CTCGAGCAGACGCCATCT	59.196	61.111	0.00	0.00	39.83	2.90
648	3874	1.153765	CGAGCAGACGCCATCTTCA	60.154	57.895	0.00	0.00	39.83	3.02
743	3979	1.675641	CTTCCCCGACCCTGCTTTG	60.676	63.158	0.00	0.00	0.00	2.77
791	4041	3.798511	CCGCTCCTCCCTTTCCCC	61.799	72.222	0.00	0.00	0.00	4.81
795	4047	1.398234	CTCCTCCCTTTCCCCTCCT	59.602	63.158	0.00	0.00	0.00	3.69
796	4048	0.253394	CTCCTCCCTTTCCCCTCCTT	60.253	60.000	0.00	0.00	0.00	3.36
800	4052	1.205460	TCCCTTTCCCCTCCTTTCCG	61.205	60.000	0.00	0.00	0.00	4.30
802	4054	1.282382	CCTTTCCCCTCCTTTCCGTA	58.718	55.000	0.00	0.00	0.00	4.02
921	4181	2.982488	TCCTTGCTTTTCTCTCCCTCTT	59.018	45.455	0.00	0.00	0.00	2.85
922	4182	3.395941	TCCTTGCTTTTCTCTCCCTCTTT	59.604	43.478	0.00	0.00	0.00	2.52
945	4205	5.725551	TCACTAATCTCTCTCCCTCTCTT	57.274	43.478	0.00	0.00	0.00	2.85
1135	4439	2.613223	GCAGTACAACTTGGAGAGGTCC	60.613	54.545	0.00	0.00	44.24	4.46
1144	4448	3.277962	GGAGAGGTCCAACGAGGTA	57.722	57.895	0.00	0.00	43.31	3.08
1202	4506	3.574445	CGCCGGAGAGATCGACGT	61.574	66.667	5.05	0.00	0.00	4.34
1207	4511	1.428219	GGAGAGATCGACGTTGCGA	59.572	57.895	1.57	1.57	45.22	5.10
1301	4613	2.283388	ACACGGCGGGGAAGTAGA	60.283	61.111	16.11	0.00	0.00	2.59
1430	4776	4.028490	CAGCGGGTGGCCCTACAA	62.028	66.667	0.00	0.00	42.67	2.41
1434	4780	2.751688	GGGTGGCCCTACAACGAA	59.248	61.111	0.00	0.00	41.34	3.85
1462	4808	4.742201	GGTTGAGCCGCTCGAGCA	62.742	66.667	34.69	14.30	40.80	4.26
1650	5009	3.503748	ACACAAACTGAATAGCAAGGAGC	59.496	43.478	0.00	0.00	46.19	4.70
1694	5053	2.861006	GAAGGCAACGAGAACGGC	59.139	61.111	0.00	0.00	44.46	5.68
1695	5054	3.011760	GAAGGCAACGAGAACGGCG	62.012	63.158	4.80	4.80	44.46	6.46
1696	5055	3.802418	AAGGCAACGAGAACGGCGT	62.802	57.895	6.77	6.77	44.94	5.68
1739	5099	2.623416	CCTCCGCTGAAACCTTCTTTTT	59.377	45.455	0.00	0.00	0.00	1.94
1741	5101	3.551846	TCCGCTGAAACCTTCTTTTTCT	58.448	40.909	0.00	0.00	34.58	2.52
1810	5178	5.766222	CAACTCCTCTCTTTTTCCATGTTG	58.234	41.667	0.00	0.00	0.00	3.33
1886	5259	7.396190	CAGTCTGTGTACTGTTTTCTTCTAC	57.604	40.000	0.00	0.00	41.63	2.59
1887	5260	6.978659	CAGTCTGTGTACTGTTTTCTTCTACA	59.021	38.462	0.00	0.00	41.63	2.74
1935	5308	5.530712	TGTTAGTAAACGCCCCAATTTTTC	58.469	37.500	0.00	0.00	38.53	2.29
2144	5529	6.575162	AATTACTGTGAACATGACCCTTTC	57.425	37.500	0.00	0.00	0.00	2.62
2206	5592	2.615240	CCCATGTGAAACGAGGTGATCA	60.615	50.000	0.00	0.00	42.39	2.92
2385	5824	9.163899	CTTGCTGAAGTCAATATGATATATGCT	57.836	33.333	0.00	0.00	0.00	3.79
2406	5847	5.011635	TGCTCCATACAGTCAGTTAACTTGA	59.988	40.000	5.07	4.60	0.00	3.02
2457	5980	8.071122	TGCTTTGCAAACTAAACATTATTGTC	57.929	30.769	8.05	0.00	34.76	3.18
2496	6019	2.808543	GTTTCAGGAGCTACTTGTGGTG	59.191	50.000	0.00	0.00	0.00	4.17
2499	6022	0.687354	AGGAGCTACTTGTGGTGGTG	59.313	55.000	0.00	0.00	0.00	4.17

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
64	65	2.122729	CAGTCCCCACCTCCTCCA	59.877	66.667	0.00	0.00	0.00	3.86
353	3578	1.095130	TTGGTACCTCCTCCCACCTA	58.905	55.000	14.36	0.00	37.07	3.08
416	3642	3.443045	GGTAGGTCGCGTTCCGGA	61.443	66.667	5.77	0.00	37.59	5.14
478	3704	6.991531	TGCTTTGAAGGAATTTATGTTTGCTT	59.008	30.769	0.00	0.00	37.44	3.91
495	3721	1.398739	TCTTTGTCGCGTTGCTTTGAA	59.601	42.857	5.77	0.00	0.00	2.69
503	3729	1.856597	GTGTACAGTCTTTGTCGCGTT	59.143	47.619	5.77	0.00	41.29	4.84
506	3732	0.782384	CCGTGTACAGTCTTTGTCGC	59.218	55.000	0.00	0.00	41.29	5.19
508	3734	5.924825	AGTTATTCCGTGTACAGTCTTTGTC	59.075	40.000	0.00	0.00	41.29	3.18
513	3739	5.356470	GTCCTAGTTATTCCGTGTACAGTCT	59.644	44.000	0.00	0.00	0.00	3.24
514	3740	5.449725	GGTCCTAGTTATTCCGTGTACAGTC	60.450	48.000	0.00	0.00	0.00	3.51
532	3758	6.954232	AGGTTTATTTGATTCGAAGGTCCTA	58.046	36.000	3.35	0.00	0.00	2.94
539	3765	9.834628	GATGTGTTTAGGTTTATTTGATTCGAA	57.165	29.630	0.00	0.00	0.00	3.71
566	3792	2.301870	ACCGACGCAATATGGATGGTAT	59.698	45.455	0.00	0.00	0.00	2.73
570	3796	0.867746	CCACCGACGCAATATGGATG	59.132	55.000	0.00	0.00	31.69	3.51
571	3797	0.468226	ACCACCGACGCAATATGGAT	59.532	50.000	0.00	0.00	34.38	3.41
580	3806	0.172803	AGATTGTAGACCACCGACGC	59.827	55.000	0.00	0.00	0.00	5.19
585	3811	7.763071	AGACGTTTATTTAGATTGTAGACCACC	59.237	37.037	0.00	0.00	0.00	4.61
601	3827	9.840427	CAGAACATTTAATCCAAGACGTTTATT	57.160	29.630	0.00	0.00	0.00	1.40
604	3830	6.016276	AGCAGAACATTTAATCCAAGACGTTT	60.016	34.615	0.00	0.00	0.00	3.60
612	3838	3.623060	GCTCGAGCAGAACATTTAATCCA	59.377	43.478	31.91	0.00	41.59	3.41
629	3855	1.139734	GAAGATGGCGTCTGCTCGA	59.860	57.895	10.56	0.00	42.25	4.04
645	3871	1.208052	AGCGCTAGAAGATTGGCTGAA	59.792	47.619	8.99	0.00	0.00	3.02
648	3874	0.105778	GGAGCGCTAGAAGATTGGCT	59.894	55.000	11.50	0.00	0.00	4.75
682	3908	1.926511	AAAATCAAGGAGCTGCCGCG	61.927	55.000	0.00	0.00	43.43	6.46
743	3979	7.418840	TCCGTATTTCTCGATCTAGTTAGAC	57.581	40.000	0.00	0.00	34.72	2.59
787	4037	1.077265	ACGTACGGAAAGGAGGGGA	59.923	57.895	21.06	0.00	0.00	4.81
791	4041	2.442188	GCGCACGTACGGAAAGGAG	61.442	63.158	21.06	6.39	0.00	3.69
795	4047	2.023223	GGAAGCGCACGTACGGAAA	61.023	57.895	21.06	0.00	0.00	3.13
796	4048	2.431260	GGAAGCGCACGTACGGAA	60.431	61.111	21.06	0.00	0.00	4.30
921	4181	6.086011	AGAGAGGGAGAGAGATTAGTGAAA	57.914	41.667	0.00	0.00	0.00	2.69
922	4182	5.725551	AGAGAGGGAGAGAGATTAGTGAA	57.274	43.478	0.00	0.00	0.00	3.18
945	4205	2.203280	CCGGCAGTGTGGGAACAA	60.203	61.111	0.00	0.00	46.06	2.83
1046	4311	4.131088	GCTCACCGACCTCGACCC	62.131	72.222	0.00	0.00	43.02	4.46
1135	4439	3.186047	CCCGCGCTTACCTCGTTG	61.186	66.667	5.56	0.00	0.00	4.10
1202	4506	2.744709	GCGGGGTAAGCTTCGCAA	60.745	61.111	21.24	0.00	46.33	4.85
1207	4511	3.628646	CTGCTGGCGGGGTAAGCTT	62.629	63.158	3.48	3.48	37.82	3.74
1341	4684	2.345991	CCGCTCCACCCGAAAGAA	59.654	61.111	0.00	0.00	0.00	2.52
1430	4776	0.600255	CAACCTCTCGCTGGTTTCGT	60.600	55.000	4.26	0.00	44.54	3.85
1462	4808	2.943978	CGACCTTCTGCTTCCCGGT	61.944	63.158	0.00	0.00	0.00	5.28
1586	4939	3.454587	GACACCTGGTCACGGCACA	62.455	63.158	0.00	0.00	46.19	4.57
1650	5009	1.445582	GTCGCCTACTGGTTGTCCG	60.446	63.158	0.00	0.00	36.30	4.79
1697	5056	3.950756	GTGGAACTCACTTGCGATTGCA	61.951	50.000	2.60	2.60	45.31	4.08
1698	5057	0.874390	TGGAACTCACTTGCGATTGC	59.126	50.000	0.00	0.00	43.20	3.56
1699	5058	1.197721	GGTGGAACTCACTTGCGATTG	59.802	52.381	0.00	0.00	45.38	2.67
1700	5059	1.072331	AGGTGGAACTCACTTGCGATT	59.928	47.619	0.00	0.00	45.38	3.34
1739	5099	7.559486	AGATAAGATGTGCAACTGAACATAGA	58.441	34.615	3.18	0.00	44.11	1.98
1741	5101	7.493645	CAGAGATAAGATGTGCAACTGAACATA	59.506	37.037	3.18	0.00	44.11	2.29
1810	5178	3.743396	GGACGGAGATGATATTGCAACTC	59.257	47.826	0.00	2.26	37.08	3.01
1868	5241	8.773404	ATGGTATGTAGAAGAAAACAGTACAC	57.227	34.615	0.00	0.00	0.00	2.90
1935	5308	4.023450	CCATTCTACCACATGCTGCATAAG	60.023	45.833	15.78	10.38	0.00	1.73
2081	5466	6.148948	TGGAAAAATTAACACTCTGCATTCG	58.851	36.000	0.00	0.00	0.00	3.34
2144	5529	2.159707	GGTCGTGTGAAAATCGTCATGG	60.160	50.000	0.00	0.00	0.00	3.66
2174	5560	2.283821	ACATGGGCCGCAACCATT	60.284	55.556	0.00	0.00	46.25	3.16
2206	5592	3.808728	ACACGACAATATAGCAGCCATT	58.191	40.909	0.00	0.00	0.00	3.16
2385	5824	7.907389	AGAATCAAGTTAACTGACTGTATGGA	58.093	34.615	9.34	0.00	0.00	3.41
2406	5847	8.492782	AGAGTCCATTGAATAGTCATGAAGAAT	58.507	33.333	0.00	0.00	32.48	2.40
2457	5980	7.012327	TCCTGAAACAAAACACTACAGAATCAG	59.988	37.037	0.00	0.00	0.00	2.90
2496	6019	2.671396	CACATCAACTTACCGTAGCACC	59.329	50.000	0.00	0.00	0.00	5.01
2499	6022	5.220605	GGATTTCACATCAACTTACCGTAGC	60.221	44.000	0.00	0.00	0.00	3.58

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.