Multiple sequence alignment - TraesCS2B01G086500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G086500 chr2B 100.000 2514 0 0 1 2514 48216917 48214404 0.000000e+00 4643
1 TraesCS2B01G086500 chr2B 94.684 1975 100 5 1 1971 48181585 48179612 0.000000e+00 3061
2 TraesCS2B01G086500 chr2B 92.973 1907 129 5 55 1957 49284988 49286893 0.000000e+00 2774
3 TraesCS2B01G086500 chr2B 94.427 1274 71 0 1 1274 48305506 48304233 0.000000e+00 1960
4 TraesCS2B01G086500 chr2B 92.716 1263 90 2 67 1327 48149051 48147789 0.000000e+00 1821
5 TraesCS2B01G086500 chr2B 93.017 716 47 2 1259 1971 48304214 48303499 0.000000e+00 1042
6 TraesCS2B01G086500 chr2B 97.297 296 8 0 2219 2514 48191872 48191577 1.040000e-138 503
7 TraesCS2B01G086500 chr2B 96.980 298 9 0 2217 2514 685916018 685915721 3.730000e-138 501
8 TraesCS2B01G086500 chr2B 95.987 299 12 0 2216 2514 650177607 650177905 1.050000e-133 486
9 TraesCS2B01G086500 chr2B 95.987 299 11 1 2216 2514 740830085 740829788 3.760000e-133 484
10 TraesCS2B01G086500 chr2B 94.044 319 16 3 2197 2514 710467389 710467705 4.860000e-132 481
11 TraesCS2B01G086500 chr2A 91.786 1948 127 16 55 1971 32101715 32099770 0.000000e+00 2680
12 TraesCS2B01G086500 chr2A 92.000 1200 93 2 773 1971 32017860 32016663 0.000000e+00 1681
13 TraesCS2B01G086500 chr2A 93.574 638 39 1 55 690 32094336 32093699 0.000000e+00 950
14 TraesCS2B01G086500 chr2A 93.528 479 27 3 799 1276 32027000 32026525 0.000000e+00 710
15 TraesCS2B01G086500 chr2A 94.360 461 26 0 804 1264 32093674 32093214 0.000000e+00 708
16 TraesCS2B01G086500 chr2A 92.842 475 34 0 189 663 32027520 32027046 0.000000e+00 689
17 TraesCS2B01G086500 chr2A 85.050 301 37 8 2216 2514 395882351 395882057 1.460000e-77 300
18 TraesCS2B01G086500 chr2D 91.950 1913 120 15 55 1962 29886031 29884148 0.000000e+00 2649
19 TraesCS2B01G086500 chr2D 89.175 1478 126 21 510 1971 30159238 30157779 0.000000e+00 1812
20 TraesCS2B01G086500 chr2D 89.163 1458 130 16 528 1971 30238813 30237370 0.000000e+00 1792
21 TraesCS2B01G086500 chr2D 91.247 457 37 3 52 508 30098013 30097560 9.880000e-174 619
22 TraesCS2B01G086500 chrUn 89.264 1481 126 22 507 1971 311531205 311532668 0.000000e+00 1823
23 TraesCS2B01G086500 chrUn 89.728 1324 105 15 510 1818 338699404 338698097 0.000000e+00 1663
24 TraesCS2B01G086500 chr4B 92.722 316 20 3 2200 2514 33593028 33592715 1.060000e-123 453
25 TraesCS2B01G086500 chr4B 85.000 320 37 9 2197 2514 121083187 121083497 5.220000e-82 315
26 TraesCS2B01G086500 chr7B 90.654 321 27 3 2195 2513 200727680 200727999 8.310000e-115 424
27 TraesCS2B01G086500 chr5B 88.854 323 25 10 2195 2514 153728200 153728514 1.090000e-103 387
28 TraesCS2B01G086500 chr7D 92.032 251 16 3 1966 2212 291371950 291372200 1.430000e-92 350
29 TraesCS2B01G086500 chr7D 91.700 253 18 3 1966 2215 326986438 326986186 5.150000e-92 348
30 TraesCS2B01G086500 chr6D 91.700 253 18 2 1966 2215 125960938 125961190 5.150000e-92 348
31 TraesCS2B01G086500 chr6D 91.235 251 19 2 1966 2213 105644211 105643961 3.100000e-89 339
32 TraesCS2B01G086500 chr6D 91.270 252 17 4 1966 2213 322419580 322419830 3.100000e-89 339
33 TraesCS2B01G086500 chr6A 91.339 254 16 5 1966 2215 393036591 393036340 2.390000e-90 342
34 TraesCS2B01G086500 chr3D 91.304 253 18 3 1966 2215 410789366 410789115 2.390000e-90 342
35 TraesCS2B01G086500 chr1D 91.304 253 19 2 1966 2215 262468757 262469009 2.390000e-90 342
36 TraesCS2B01G086500 chr4D 91.304 253 17 4 1966 2215 333239628 333239378 8.610000e-90 340
37 TraesCS2B01G086500 chr3A 85.938 320 40 5 2196 2514 644211058 644211373 1.110000e-88 337
38 TraesCS2B01G086500 chr6B 87.086 302 30 8 2215 2514 535834050 535833756 1.440000e-87 333
39 TraesCS2B01G086500 chr5A 87.063 286 30 6 2230 2514 408007808 408007529 1.450000e-82 316


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G086500 chr2B 48214404 48216917 2513 True 4643.0 4643 100.000 1 2514 1 chr2B.!!$R4 2513
1 TraesCS2B01G086500 chr2B 48179612 48181585 1973 True 3061.0 3061 94.684 1 1971 1 chr2B.!!$R2 1970
2 TraesCS2B01G086500 chr2B 49284988 49286893 1905 False 2774.0 2774 92.973 55 1957 1 chr2B.!!$F1 1902
3 TraesCS2B01G086500 chr2B 48147789 48149051 1262 True 1821.0 1821 92.716 67 1327 1 chr2B.!!$R1 1260
4 TraesCS2B01G086500 chr2B 48303499 48305506 2007 True 1501.0 1960 93.722 1 1971 2 chr2B.!!$R7 1970
5 TraesCS2B01G086500 chr2A 32099770 32101715 1945 True 2680.0 2680 91.786 55 1971 1 chr2A.!!$R2 1916
6 TraesCS2B01G086500 chr2A 32016663 32017860 1197 True 1681.0 1681 92.000 773 1971 1 chr2A.!!$R1 1198
7 TraesCS2B01G086500 chr2A 32093214 32094336 1122 True 829.0 950 93.967 55 1264 2 chr2A.!!$R5 1209
8 TraesCS2B01G086500 chr2A 32026525 32027520 995 True 699.5 710 93.185 189 1276 2 chr2A.!!$R4 1087
9 TraesCS2B01G086500 chr2D 29884148 29886031 1883 True 2649.0 2649 91.950 55 1962 1 chr2D.!!$R1 1907
10 TraesCS2B01G086500 chr2D 30157779 30159238 1459 True 1812.0 1812 89.175 510 1971 1 chr2D.!!$R3 1461
11 TraesCS2B01G086500 chr2D 30237370 30238813 1443 True 1792.0 1792 89.163 528 1971 1 chr2D.!!$R4 1443
12 TraesCS2B01G086500 chrUn 311531205 311532668 1463 False 1823.0 1823 89.264 507 1971 1 chrUn.!!$F1 1464
13 TraesCS2B01G086500 chrUn 338698097 338699404 1307 True 1663.0 1663 89.728 510 1818 1 chrUn.!!$R1 1308

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 371 0.973496 TACGAGGCATACCAGCACCA 60.973 55.0 0.0 0.0 39.06 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2132 2221 0.0293 CACAAGTGTGGTTCAAGCGG 59.971 55.0 3.39 0.0 42.1 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.323225 GGTTCTAGTGGTAGGTATATGTGTGT 59.677 42.308 0.00 0.00 0.00 3.72
226 227 9.644993 CTCATTAATAACAAAATATTCGCGACA 57.355 29.630 9.15 0.00 0.00 4.35
307 308 1.117150 GGCGGTGGAGATAGGTTGTA 58.883 55.000 0.00 0.00 0.00 2.41
370 371 0.973496 TACGAGGCATACCAGCACCA 60.973 55.000 0.00 0.00 39.06 4.17
422 423 1.813102 AGATCCCCAATCTCCTCCAC 58.187 55.000 0.00 0.00 40.99 4.02
470 472 9.088987 AGGTACATGTTCCATTATTTGTTTTCT 57.911 29.630 22.00 0.00 0.00 2.52
596 629 9.442062 TTGATCTATAACAGTATAGGGTGGAAA 57.558 33.333 0.00 0.00 39.77 3.13
645 678 6.976636 TCAATATCTGCATCGTTGTTGTTA 57.023 33.333 0.00 0.00 0.00 2.41
657 690 4.155099 TCGTTGTTGTTATTAGCACCCATG 59.845 41.667 0.00 0.00 0.00 3.66
672 705 7.630242 AGCACCCATGTATATGCATTTATAC 57.370 36.000 3.54 8.60 40.63 1.47
800 836 2.224784 GCATGCATAGCACAATCGATCA 59.775 45.455 14.21 0.00 43.04 2.92
951 998 4.024048 GCAAGTACTAATATGGCATGCGTT 60.024 41.667 12.44 3.76 0.00 4.84
1089 1136 6.200878 AGGTTGGTCCTCTCAAAAATTCTA 57.799 37.500 0.00 0.00 44.42 2.10
1094 1141 6.837312 TGGTCCTCTCAAAAATTCTACTCAA 58.163 36.000 0.00 0.00 0.00 3.02
1119 1166 2.747989 TCACTGTGAGGTTACTCTAGCG 59.252 50.000 6.36 0.00 44.29 4.26
1224 1271 4.485875 TGACTGGTCCAGAGGTACTTAAA 58.514 43.478 26.18 0.00 41.55 1.52
1371 1458 2.424956 GGGAAACTGATGTGAAGATGGC 59.575 50.000 0.00 0.00 0.00 4.40
1599 1686 6.058833 TGCTTTAGTCTCCATTGTTGTGTTA 58.941 36.000 0.00 0.00 0.00 2.41
1638 1725 6.317088 TCATTTGATTTCGAGAACTTCATGC 58.683 36.000 0.00 0.00 0.00 4.06
1743 1830 2.027653 GCCAAGGCTTCTCACTAACTCT 60.028 50.000 3.29 0.00 38.26 3.24
1873 1962 7.115947 GTGTATCCAGTTAATGACCGCTATTAC 59.884 40.741 0.00 0.00 0.00 1.89
1971 2060 0.700564 ACTTGTCATGCACCCATCCT 59.299 50.000 0.00 0.00 0.00 3.24
1972 2061 1.076024 ACTTGTCATGCACCCATCCTT 59.924 47.619 0.00 0.00 0.00 3.36
1973 2062 2.173519 CTTGTCATGCACCCATCCTTT 58.826 47.619 0.00 0.00 0.00 3.11
1974 2063 1.838112 TGTCATGCACCCATCCTTTC 58.162 50.000 0.00 0.00 0.00 2.62
1975 2064 1.106285 GTCATGCACCCATCCTTTCC 58.894 55.000 0.00 0.00 0.00 3.13
1976 2065 0.033208 TCATGCACCCATCCTTTCCC 60.033 55.000 0.00 0.00 0.00 3.97
1977 2066 0.032813 CATGCACCCATCCTTTCCCT 60.033 55.000 0.00 0.00 0.00 4.20
1978 2067 0.259938 ATGCACCCATCCTTTCCCTC 59.740 55.000 0.00 0.00 0.00 4.30
1979 2068 1.076705 GCACCCATCCTTTCCCTCC 60.077 63.158 0.00 0.00 0.00 4.30
1980 2069 1.224592 CACCCATCCTTTCCCTCCG 59.775 63.158 0.00 0.00 0.00 4.63
1981 2070 1.229853 ACCCATCCTTTCCCTCCGT 60.230 57.895 0.00 0.00 0.00 4.69
1982 2071 0.043637 ACCCATCCTTTCCCTCCGTA 59.956 55.000 0.00 0.00 0.00 4.02
1983 2072 1.209621 CCCATCCTTTCCCTCCGTAA 58.790 55.000 0.00 0.00 0.00 3.18
1984 2073 1.134189 CCCATCCTTTCCCTCCGTAAC 60.134 57.143 0.00 0.00 0.00 2.50
1985 2074 1.557832 CCATCCTTTCCCTCCGTAACA 59.442 52.381 0.00 0.00 0.00 2.41
1986 2075 2.629051 CATCCTTTCCCTCCGTAACAC 58.371 52.381 0.00 0.00 0.00 3.32
1987 2076 0.978907 TCCTTTCCCTCCGTAACACC 59.021 55.000 0.00 0.00 0.00 4.16
1988 2077 0.688487 CCTTTCCCTCCGTAACACCA 59.312 55.000 0.00 0.00 0.00 4.17
1989 2078 1.280998 CCTTTCCCTCCGTAACACCAT 59.719 52.381 0.00 0.00 0.00 3.55
1990 2079 2.290705 CCTTTCCCTCCGTAACACCATT 60.291 50.000 0.00 0.00 0.00 3.16
1991 2080 3.418047 CTTTCCCTCCGTAACACCATTT 58.582 45.455 0.00 0.00 0.00 2.32
1992 2081 3.512219 TTCCCTCCGTAACACCATTTT 57.488 42.857 0.00 0.00 0.00 1.82
1993 2082 2.785562 TCCCTCCGTAACACCATTTTG 58.214 47.619 0.00 0.00 0.00 2.44
1994 2083 2.106857 TCCCTCCGTAACACCATTTTGT 59.893 45.455 0.00 0.00 0.00 2.83
1995 2084 2.486592 CCCTCCGTAACACCATTTTGTC 59.513 50.000 0.00 0.00 0.00 3.18
1996 2085 3.408634 CCTCCGTAACACCATTTTGTCT 58.591 45.455 0.00 0.00 0.00 3.41
1997 2086 3.818773 CCTCCGTAACACCATTTTGTCTT 59.181 43.478 0.00 0.00 0.00 3.01
1998 2087 4.277423 CCTCCGTAACACCATTTTGTCTTT 59.723 41.667 0.00 0.00 0.00 2.52
1999 2088 5.470777 CCTCCGTAACACCATTTTGTCTTTA 59.529 40.000 0.00 0.00 0.00 1.85
2000 2089 6.016943 CCTCCGTAACACCATTTTGTCTTTAA 60.017 38.462 0.00 0.00 0.00 1.52
2001 2090 7.330900 TCCGTAACACCATTTTGTCTTTAAA 57.669 32.000 0.00 0.00 0.00 1.52
2002 2091 7.769220 TCCGTAACACCATTTTGTCTTTAAAA 58.231 30.769 0.00 0.00 34.39 1.52
2003 2092 8.248945 TCCGTAACACCATTTTGTCTTTAAAAA 58.751 29.630 0.00 0.00 33.67 1.94
2004 2093 8.322428 CCGTAACACCATTTTGTCTTTAAAAAC 58.678 33.333 0.00 0.00 33.67 2.43
2005 2094 8.861101 CGTAACACCATTTTGTCTTTAAAAACA 58.139 29.630 0.00 0.00 33.67 2.83
2052 2141 9.329913 CCACAAACAATTTACTAGAAAGAATCG 57.670 33.333 0.00 0.00 0.00 3.34
2053 2142 9.878599 CACAAACAATTTACTAGAAAGAATCGT 57.121 29.630 0.00 0.00 0.00 3.73
2054 2143 9.878599 ACAAACAATTTACTAGAAAGAATCGTG 57.121 29.630 0.00 0.00 0.00 4.35
2055 2144 9.878599 CAAACAATTTACTAGAAAGAATCGTGT 57.121 29.630 0.00 0.00 0.00 4.49
2056 2145 9.878599 AAACAATTTACTAGAAAGAATCGTGTG 57.121 29.630 0.00 0.00 0.00 3.82
2057 2146 8.029642 ACAATTTACTAGAAAGAATCGTGTGG 57.970 34.615 0.00 0.00 0.00 4.17
2058 2147 7.119262 ACAATTTACTAGAAAGAATCGTGTGGG 59.881 37.037 0.00 0.00 0.00 4.61
2059 2148 5.988310 TTACTAGAAAGAATCGTGTGGGA 57.012 39.130 0.00 0.00 0.00 4.37
2060 2149 6.540438 TTACTAGAAAGAATCGTGTGGGAT 57.460 37.500 0.00 0.00 0.00 3.85
2061 2150 4.759782 ACTAGAAAGAATCGTGTGGGATG 58.240 43.478 0.00 0.00 0.00 3.51
2062 2151 3.981071 AGAAAGAATCGTGTGGGATGA 57.019 42.857 0.00 0.00 0.00 2.92
2063 2152 4.494091 AGAAAGAATCGTGTGGGATGAT 57.506 40.909 0.00 0.00 30.94 2.45
2064 2153 5.614324 AGAAAGAATCGTGTGGGATGATA 57.386 39.130 0.00 0.00 29.42 2.15
2065 2154 6.179906 AGAAAGAATCGTGTGGGATGATAT 57.820 37.500 0.00 0.00 29.42 1.63
2066 2155 7.303182 AGAAAGAATCGTGTGGGATGATATA 57.697 36.000 0.00 0.00 29.42 0.86
2067 2156 7.735917 AGAAAGAATCGTGTGGGATGATATAA 58.264 34.615 0.00 0.00 29.42 0.98
2068 2157 8.210946 AGAAAGAATCGTGTGGGATGATATAAA 58.789 33.333 0.00 0.00 29.42 1.40
2069 2158 8.924511 AAAGAATCGTGTGGGATGATATAAAT 57.075 30.769 0.00 0.00 29.42 1.40
2072 2161 9.823647 AGAATCGTGTGGGATGATATAAATATC 57.176 33.333 3.45 3.45 39.62 1.63
2073 2162 9.823647 GAATCGTGTGGGATGATATAAATATCT 57.176 33.333 10.50 0.00 39.82 1.98
2075 2164 9.605275 ATCGTGTGGGATGATATAAATATCTTG 57.395 33.333 10.50 0.00 39.82 3.02
2076 2165 8.040727 TCGTGTGGGATGATATAAATATCTTGG 58.959 37.037 10.50 0.00 39.82 3.61
2077 2166 7.201644 CGTGTGGGATGATATAAATATCTTGGC 60.202 40.741 10.50 0.00 39.82 4.52
2078 2167 6.823182 TGTGGGATGATATAAATATCTTGGCG 59.177 38.462 10.50 0.00 39.82 5.69
2079 2168 5.822519 TGGGATGATATAAATATCTTGGCGC 59.177 40.000 0.00 0.00 39.82 6.53
2080 2169 5.822519 GGGATGATATAAATATCTTGGCGCA 59.177 40.000 10.83 0.00 39.82 6.09
2081 2170 6.238484 GGGATGATATAAATATCTTGGCGCAC 60.238 42.308 10.83 0.00 39.82 5.34
2082 2171 6.238484 GGATGATATAAATATCTTGGCGCACC 60.238 42.308 10.83 0.00 39.82 5.01
2083 2172 5.555966 TGATATAAATATCTTGGCGCACCA 58.444 37.500 10.83 0.00 40.79 4.17
2084 2173 6.179756 TGATATAAATATCTTGGCGCACCAT 58.820 36.000 10.83 0.00 40.33 3.55
2085 2174 6.316140 TGATATAAATATCTTGGCGCACCATC 59.684 38.462 10.83 0.00 40.33 3.51
2086 2175 6.540189 GATATAAATATCTTGGCGCACCATCT 59.460 38.462 10.83 0.00 37.62 2.90
2087 2176 7.066284 GATATAAATATCTTGGCGCACCATCTT 59.934 37.037 10.83 0.00 37.62 2.40
2091 2180 3.392228 TGGCGCACCATCTTCTCT 58.608 55.556 10.83 0.00 42.67 3.10
2092 2181 1.078918 TGGCGCACCATCTTCTCTG 60.079 57.895 10.83 0.00 42.67 3.35
2093 2182 1.817099 GGCGCACCATCTTCTCTGG 60.817 63.158 10.83 0.00 39.80 3.86
2094 2183 2.467826 GCGCACCATCTTCTCTGGC 61.468 63.158 0.30 0.00 37.27 4.85
2095 2184 1.220206 CGCACCATCTTCTCTGGCT 59.780 57.895 0.00 0.00 37.27 4.75
2096 2185 0.392193 CGCACCATCTTCTCTGGCTT 60.392 55.000 0.00 0.00 37.27 4.35
2097 2186 1.134699 CGCACCATCTTCTCTGGCTTA 60.135 52.381 0.00 0.00 37.27 3.09
2098 2187 2.484417 CGCACCATCTTCTCTGGCTTAT 60.484 50.000 0.00 0.00 37.27 1.73
2099 2188 2.877168 GCACCATCTTCTCTGGCTTATG 59.123 50.000 0.00 0.00 37.27 1.90
2100 2189 2.877168 CACCATCTTCTCTGGCTTATGC 59.123 50.000 0.00 0.00 37.27 3.14
2101 2190 2.507058 ACCATCTTCTCTGGCTTATGCA 59.493 45.455 2.72 0.00 41.91 3.96
2102 2191 3.139850 CCATCTTCTCTGGCTTATGCAG 58.860 50.000 2.72 0.00 41.91 4.41
2103 2192 2.996249 TCTTCTCTGGCTTATGCAGG 57.004 50.000 2.72 0.00 41.91 4.85
2104 2193 2.470990 TCTTCTCTGGCTTATGCAGGA 58.529 47.619 2.72 0.00 41.91 3.86
2105 2194 2.840038 TCTTCTCTGGCTTATGCAGGAA 59.160 45.455 2.72 0.00 41.91 3.36
2106 2195 2.996249 TCTCTGGCTTATGCAGGAAG 57.004 50.000 6.76 6.76 41.91 3.46
2108 2197 0.914644 TCTGGCTTATGCAGGAAGCT 59.085 50.000 26.50 0.00 46.93 3.74
2109 2198 1.283029 TCTGGCTTATGCAGGAAGCTT 59.717 47.619 26.50 0.00 46.93 3.74
2110 2199 1.674962 CTGGCTTATGCAGGAAGCTTC 59.325 52.381 26.50 18.54 46.93 3.86
2111 2200 0.659957 GGCTTATGCAGGAAGCTTCG 59.340 55.000 26.50 8.59 46.93 3.79
2112 2201 1.373570 GCTTATGCAGGAAGCTTCGT 58.626 50.000 22.64 17.84 44.83 3.85
2113 2202 1.328986 GCTTATGCAGGAAGCTTCGTC 59.671 52.381 22.64 13.42 44.83 4.20
2114 2203 2.621338 CTTATGCAGGAAGCTTCGTCA 58.379 47.619 18.42 17.85 45.94 4.35
2115 2204 2.988010 TATGCAGGAAGCTTCGTCAT 57.012 45.000 24.19 24.19 45.94 3.06
2116 2205 1.661341 ATGCAGGAAGCTTCGTCATC 58.339 50.000 18.42 11.13 45.94 2.92
2117 2206 0.610174 TGCAGGAAGCTTCGTCATCT 59.390 50.000 18.42 7.48 45.94 2.90
2118 2207 1.824852 TGCAGGAAGCTTCGTCATCTA 59.175 47.619 18.42 1.68 45.94 1.98
2119 2208 2.197577 GCAGGAAGCTTCGTCATCTAC 58.802 52.381 18.42 2.97 41.15 2.59
2120 2209 2.417379 GCAGGAAGCTTCGTCATCTACA 60.417 50.000 18.42 0.00 41.15 2.74
2121 2210 3.443037 CAGGAAGCTTCGTCATCTACAG 58.557 50.000 18.42 1.92 0.00 2.74
2122 2211 3.093057 AGGAAGCTTCGTCATCTACAGT 58.907 45.455 19.91 0.00 0.00 3.55
2123 2212 3.129638 AGGAAGCTTCGTCATCTACAGTC 59.870 47.826 19.91 1.64 0.00 3.51
2124 2213 3.440228 GAAGCTTCGTCATCTACAGTCC 58.560 50.000 11.40 0.00 0.00 3.85
2125 2214 2.447443 AGCTTCGTCATCTACAGTCCA 58.553 47.619 0.00 0.00 0.00 4.02
2126 2215 2.164624 AGCTTCGTCATCTACAGTCCAC 59.835 50.000 0.00 0.00 0.00 4.02
2127 2216 2.164624 GCTTCGTCATCTACAGTCCACT 59.835 50.000 0.00 0.00 0.00 4.00
2140 2229 4.659172 CCACTGCCCCCGCTTGAA 62.659 66.667 0.00 0.00 35.36 2.69
2141 2230 3.365265 CACTGCCCCCGCTTGAAC 61.365 66.667 0.00 0.00 35.36 3.18
2142 2231 4.660938 ACTGCCCCCGCTTGAACC 62.661 66.667 0.00 0.00 35.36 3.62
2143 2232 4.659172 CTGCCCCCGCTTGAACCA 62.659 66.667 0.00 0.00 35.36 3.67
2144 2233 4.966787 TGCCCCCGCTTGAACCAC 62.967 66.667 0.00 0.00 35.36 4.16
2145 2234 4.966787 GCCCCCGCTTGAACCACA 62.967 66.667 0.00 0.00 0.00 4.17
2146 2235 2.983592 CCCCCGCTTGAACCACAC 60.984 66.667 0.00 0.00 0.00 3.82
2147 2236 2.113139 CCCCGCTTGAACCACACT 59.887 61.111 0.00 0.00 0.00 3.55
2148 2237 1.528309 CCCCGCTTGAACCACACTT 60.528 57.895 0.00 0.00 0.00 3.16
2149 2238 1.654220 CCCGCTTGAACCACACTTG 59.346 57.895 0.00 0.00 0.00 3.16
2150 2239 1.101049 CCCGCTTGAACCACACTTGT 61.101 55.000 0.00 0.00 0.00 3.16
2151 2240 0.029300 CCGCTTGAACCACACTTGTG 59.971 55.000 2.13 2.13 45.23 3.33
2152 2241 0.732571 CGCTTGAACCACACTTGTGT 59.267 50.000 8.52 0.00 44.21 3.72
2164 2253 2.653890 CACTTGTGTGCCAATTTCTCG 58.346 47.619 0.00 0.00 37.38 4.04
2165 2254 1.001378 ACTTGTGTGCCAATTTCTCGC 60.001 47.619 0.00 0.00 31.20 5.03
2166 2255 0.040514 TTGTGTGCCAATTTCTCGCG 60.041 50.000 0.00 0.00 0.00 5.87
2167 2256 1.154225 GTGTGCCAATTTCTCGCGG 60.154 57.895 6.13 0.00 0.00 6.46
2168 2257 2.202479 GTGCCAATTTCTCGCGGC 60.202 61.111 6.13 0.00 45.11 6.53
2170 2259 2.202479 GCCAATTTCTCGCGGCAC 60.202 61.111 6.13 0.00 44.25 5.01
2171 2260 2.485122 CCAATTTCTCGCGGCACC 59.515 61.111 6.13 0.00 0.00 5.01
2172 2261 2.098298 CAATTTCTCGCGGCACCG 59.902 61.111 6.13 4.30 43.09 4.94
2173 2262 2.047655 AATTTCTCGCGGCACCGA 60.048 55.556 14.43 0.00 42.83 4.69
2210 2299 5.796813 GCGACCGCAAAAATATCTATATCC 58.203 41.667 9.73 0.00 41.49 2.59
2211 2300 5.220605 GCGACCGCAAAAATATCTATATCCC 60.221 44.000 9.73 0.00 41.49 3.85
2212 2301 5.293569 CGACCGCAAAAATATCTATATCCCC 59.706 44.000 0.00 0.00 0.00 4.81
2213 2302 5.183228 ACCGCAAAAATATCTATATCCCCG 58.817 41.667 0.00 0.00 0.00 5.73
2214 2303 4.035208 CCGCAAAAATATCTATATCCCCGC 59.965 45.833 0.00 0.00 0.00 6.13
2215 2304 4.876107 CGCAAAAATATCTATATCCCCGCT 59.124 41.667 0.00 0.00 0.00 5.52
2216 2305 5.354234 CGCAAAAATATCTATATCCCCGCTT 59.646 40.000 0.00 0.00 0.00 4.68
2217 2306 6.555315 GCAAAAATATCTATATCCCCGCTTG 58.445 40.000 0.00 0.00 0.00 4.01
2218 2307 6.151144 GCAAAAATATCTATATCCCCGCTTGT 59.849 38.462 0.00 0.00 0.00 3.16
2219 2308 7.626452 GCAAAAATATCTATATCCCCGCTTGTC 60.626 40.741 0.00 0.00 0.00 3.18
2220 2309 4.920640 ATATCTATATCCCCGCTTGTCG 57.079 45.455 0.00 0.00 38.08 4.35
2221 2310 1.991121 TCTATATCCCCGCTTGTCGT 58.009 50.000 0.00 0.00 36.19 4.34
2222 2311 1.884579 TCTATATCCCCGCTTGTCGTC 59.115 52.381 0.00 0.00 36.19 4.20
2223 2312 0.594602 TATATCCCCGCTTGTCGTCG 59.405 55.000 0.00 0.00 36.19 5.12
2224 2313 1.105167 ATATCCCCGCTTGTCGTCGA 61.105 55.000 0.00 0.00 36.19 4.20
2225 2314 1.314534 TATCCCCGCTTGTCGTCGAA 61.315 55.000 0.00 0.00 36.19 3.71
2226 2315 2.162338 ATCCCCGCTTGTCGTCGAAA 62.162 55.000 0.00 0.00 36.19 3.46
2227 2316 1.740296 CCCCGCTTGTCGTCGAAAT 60.740 57.895 0.00 0.00 36.19 2.17
2228 2317 0.458889 CCCCGCTTGTCGTCGAAATA 60.459 55.000 0.00 0.00 36.19 1.40
2229 2318 1.567504 CCCGCTTGTCGTCGAAATAT 58.432 50.000 0.00 0.00 36.19 1.28
2230 2319 1.521423 CCCGCTTGTCGTCGAAATATC 59.479 52.381 0.00 0.00 36.19 1.63
2231 2320 2.190161 CCGCTTGTCGTCGAAATATCA 58.810 47.619 0.00 0.00 36.19 2.15
2232 2321 2.034842 CCGCTTGTCGTCGAAATATCAC 60.035 50.000 0.00 0.00 36.19 3.06
2233 2322 2.345470 CGCTTGTCGTCGAAATATCACG 60.345 50.000 0.00 0.00 33.95 4.35
2234 2323 2.597305 GCTTGTCGTCGAAATATCACGT 59.403 45.455 0.00 0.00 34.17 4.49
2235 2324 3.301007 GCTTGTCGTCGAAATATCACGTC 60.301 47.826 0.00 0.00 34.17 4.34
2236 2325 3.474693 TGTCGTCGAAATATCACGTCA 57.525 42.857 0.00 0.00 34.17 4.35
2237 2326 3.422655 TGTCGTCGAAATATCACGTCAG 58.577 45.455 0.00 0.00 34.17 3.51
2238 2327 3.125658 TGTCGTCGAAATATCACGTCAGA 59.874 43.478 0.00 0.00 34.17 3.27
2239 2328 4.201881 TGTCGTCGAAATATCACGTCAGAT 60.202 41.667 0.00 0.00 34.17 2.90
2240 2329 4.144902 GTCGTCGAAATATCACGTCAGATG 59.855 45.833 0.00 0.00 34.17 2.90
2241 2330 4.035684 CGTCGAAATATCACGTCAGATGT 58.964 43.478 0.00 0.00 0.00 3.06
2242 2331 4.144902 CGTCGAAATATCACGTCAGATGTC 59.855 45.833 0.00 0.00 0.00 3.06
2243 2332 4.441415 GTCGAAATATCACGTCAGATGTCC 59.559 45.833 0.00 0.00 0.00 4.02
2244 2333 4.338400 TCGAAATATCACGTCAGATGTCCT 59.662 41.667 0.00 0.00 0.00 3.85
2245 2334 4.677378 CGAAATATCACGTCAGATGTCCTC 59.323 45.833 0.00 0.00 0.00 3.71
2246 2335 5.592054 GAAATATCACGTCAGATGTCCTCA 58.408 41.667 0.00 0.00 0.00 3.86
2247 2336 5.798125 AATATCACGTCAGATGTCCTCAT 57.202 39.130 0.00 0.00 36.95 2.90
2248 2337 2.947448 TCACGTCAGATGTCCTCATG 57.053 50.000 0.00 0.00 34.06 3.07
2249 2338 2.446435 TCACGTCAGATGTCCTCATGA 58.554 47.619 0.00 0.00 34.06 3.07
2250 2339 2.825532 TCACGTCAGATGTCCTCATGAA 59.174 45.455 0.00 0.00 34.06 2.57
2251 2340 3.258123 TCACGTCAGATGTCCTCATGAAA 59.742 43.478 0.00 0.00 34.06 2.69
2252 2341 3.615937 CACGTCAGATGTCCTCATGAAAG 59.384 47.826 0.00 0.00 34.06 2.62
2253 2342 3.193263 CGTCAGATGTCCTCATGAAAGG 58.807 50.000 0.00 0.00 37.81 3.11
2254 2343 3.118992 CGTCAGATGTCCTCATGAAAGGA 60.119 47.826 0.00 0.00 43.30 3.36
2262 2351 4.720649 TCCTCATGAAAGGACTTAGTCG 57.279 45.455 6.27 0.00 40.60 4.18
2263 2352 4.087182 TCCTCATGAAAGGACTTAGTCGT 58.913 43.478 6.27 3.84 40.60 4.34
2264 2353 4.082190 TCCTCATGAAAGGACTTAGTCGTG 60.082 45.833 8.39 0.00 40.60 4.35
2265 2354 4.177026 CTCATGAAAGGACTTAGTCGTGG 58.823 47.826 8.39 0.00 32.65 4.94
2266 2355 3.830178 TCATGAAAGGACTTAGTCGTGGA 59.170 43.478 8.39 0.16 32.65 4.02
2267 2356 3.936372 TGAAAGGACTTAGTCGTGGAG 57.064 47.619 8.39 0.00 32.65 3.86
2268 2357 2.029290 TGAAAGGACTTAGTCGTGGAGC 60.029 50.000 8.39 0.20 32.65 4.70
2269 2358 0.896226 AAGGACTTAGTCGTGGAGCC 59.104 55.000 8.39 0.00 32.65 4.70
2270 2359 0.251653 AGGACTTAGTCGTGGAGCCA 60.252 55.000 6.78 0.00 32.65 4.75
2271 2360 0.824759 GGACTTAGTCGTGGAGCCAT 59.175 55.000 6.27 0.00 32.65 4.40
2272 2361 1.202428 GGACTTAGTCGTGGAGCCATC 60.202 57.143 6.27 0.00 32.65 3.51
2273 2362 0.456221 ACTTAGTCGTGGAGCCATCG 59.544 55.000 0.00 0.00 0.00 3.84
2274 2363 0.872021 CTTAGTCGTGGAGCCATCGC 60.872 60.000 0.00 0.00 0.00 4.58
2275 2364 2.607668 TTAGTCGTGGAGCCATCGCG 62.608 60.000 0.00 0.00 41.18 5.87
2276 2365 4.492160 GTCGTGGAGCCATCGCGA 62.492 66.667 13.09 13.09 41.18 5.87
2277 2366 4.492160 TCGTGGAGCCATCGCGAC 62.492 66.667 12.93 0.00 41.18 5.19
2282 2371 4.814294 GAGCCATCGCGACGGGTT 62.814 66.667 27.73 21.48 41.18 4.11
2283 2372 3.420214 GAGCCATCGCGACGGGTTA 62.420 63.158 27.73 0.00 41.18 2.85
2284 2373 2.960129 GCCATCGCGACGGGTTAG 60.960 66.667 24.20 0.00 0.00 2.34
2285 2374 2.960129 CCATCGCGACGGGTTAGC 60.960 66.667 14.67 0.00 0.00 3.09
2286 2375 2.104331 CATCGCGACGGGTTAGCT 59.896 61.111 12.93 0.00 0.00 3.32
2287 2376 1.518572 CATCGCGACGGGTTAGCTT 60.519 57.895 12.93 0.00 0.00 3.74
2288 2377 0.248743 CATCGCGACGGGTTAGCTTA 60.249 55.000 12.93 0.00 0.00 3.09
2289 2378 0.457035 ATCGCGACGGGTTAGCTTAA 59.543 50.000 12.93 0.00 0.00 1.85
2290 2379 0.243365 TCGCGACGGGTTAGCTTAAA 59.757 50.000 3.71 0.00 0.00 1.52
2291 2380 0.643820 CGCGACGGGTTAGCTTAAAG 59.356 55.000 0.00 0.00 0.00 1.85
2292 2381 1.004595 GCGACGGGTTAGCTTAAAGG 58.995 55.000 0.00 0.00 0.00 3.11
2293 2382 1.648504 CGACGGGTTAGCTTAAAGGG 58.351 55.000 0.00 0.00 0.00 3.95
2294 2383 1.741394 CGACGGGTTAGCTTAAAGGGG 60.741 57.143 0.00 0.00 0.00 4.79
2295 2384 1.280133 GACGGGTTAGCTTAAAGGGGT 59.720 52.381 0.00 0.00 0.00 4.95
2296 2385 1.706866 ACGGGTTAGCTTAAAGGGGTT 59.293 47.619 0.00 0.00 0.00 4.11
2297 2386 2.912295 ACGGGTTAGCTTAAAGGGGTTA 59.088 45.455 0.00 0.00 0.00 2.85
2298 2387 3.330405 ACGGGTTAGCTTAAAGGGGTTAA 59.670 43.478 0.00 0.00 0.00 2.01
2299 2388 4.202556 ACGGGTTAGCTTAAAGGGGTTAAA 60.203 41.667 0.00 0.00 31.22 1.52
2300 2389 4.156556 CGGGTTAGCTTAAAGGGGTTAAAC 59.843 45.833 0.00 0.00 31.22 2.01
2301 2390 4.463891 GGGTTAGCTTAAAGGGGTTAAACC 59.536 45.833 0.00 0.00 37.60 3.27
2302 2391 4.156556 GGTTAGCTTAAAGGGGTTAAACCG 59.843 45.833 2.75 0.00 39.83 4.44
2303 2392 2.799017 AGCTTAAAGGGGTTAAACCGG 58.201 47.619 2.75 0.00 39.83 5.28
2304 2393 2.376181 AGCTTAAAGGGGTTAAACCGGA 59.624 45.455 9.46 0.00 39.83 5.14
2305 2394 2.489329 GCTTAAAGGGGTTAAACCGGAC 59.511 50.000 9.46 0.00 39.83 4.79
2306 2395 3.753815 CTTAAAGGGGTTAAACCGGACA 58.246 45.455 9.46 0.00 39.83 4.02
2307 2396 2.752075 AAAGGGGTTAAACCGGACAA 57.248 45.000 9.46 0.00 39.83 3.18
2308 2397 2.752075 AAGGGGTTAAACCGGACAAA 57.248 45.000 9.46 0.00 39.83 2.83
2309 2398 2.281539 AGGGGTTAAACCGGACAAAG 57.718 50.000 9.46 0.00 39.83 2.77
2310 2399 1.202964 AGGGGTTAAACCGGACAAAGG 60.203 52.381 9.46 0.00 39.83 3.11
2311 2400 1.202915 GGGGTTAAACCGGACAAAGGA 60.203 52.381 9.46 0.00 39.83 3.36
2312 2401 1.881973 GGGTTAAACCGGACAAAGGAC 59.118 52.381 9.46 0.00 39.83 3.85
2313 2402 2.574450 GGTTAAACCGGACAAAGGACA 58.426 47.619 9.46 0.00 0.00 4.02
2314 2403 2.291465 GGTTAAACCGGACAAAGGACAC 59.709 50.000 9.46 0.00 0.00 3.67
2315 2404 1.868469 TAAACCGGACAAAGGACACG 58.132 50.000 9.46 0.00 0.00 4.49
2316 2405 0.178533 AAACCGGACAAAGGACACGA 59.821 50.000 9.46 0.00 0.00 4.35
2317 2406 0.249741 AACCGGACAAAGGACACGAG 60.250 55.000 9.46 0.00 0.00 4.18
2318 2407 1.374252 CCGGACAAAGGACACGAGG 60.374 63.158 0.00 0.00 0.00 4.63
2319 2408 1.374252 CGGACAAAGGACACGAGGG 60.374 63.158 0.00 0.00 0.00 4.30
2320 2409 1.812686 CGGACAAAGGACACGAGGGA 61.813 60.000 0.00 0.00 0.00 4.20
2321 2410 0.613777 GGACAAAGGACACGAGGGAT 59.386 55.000 0.00 0.00 0.00 3.85
2322 2411 1.003233 GGACAAAGGACACGAGGGATT 59.997 52.381 0.00 0.00 0.00 3.01
2323 2412 2.552373 GGACAAAGGACACGAGGGATTT 60.552 50.000 0.00 0.00 0.00 2.17
2324 2413 3.146847 GACAAAGGACACGAGGGATTTT 58.853 45.455 0.00 0.00 0.00 1.82
2325 2414 4.320870 GACAAAGGACACGAGGGATTTTA 58.679 43.478 0.00 0.00 0.00 1.52
2326 2415 4.918588 ACAAAGGACACGAGGGATTTTAT 58.081 39.130 0.00 0.00 0.00 1.40
2327 2416 6.057321 ACAAAGGACACGAGGGATTTTATA 57.943 37.500 0.00 0.00 0.00 0.98
2328 2417 5.878669 ACAAAGGACACGAGGGATTTTATAC 59.121 40.000 0.00 0.00 0.00 1.47
2329 2418 5.952347 AAGGACACGAGGGATTTTATACT 57.048 39.130 0.00 0.00 0.00 2.12
2330 2419 7.093201 ACAAAGGACACGAGGGATTTTATACTA 60.093 37.037 0.00 0.00 0.00 1.82
2331 2420 6.651975 AGGACACGAGGGATTTTATACTAG 57.348 41.667 0.00 0.00 0.00 2.57
2332 2421 6.134754 AGGACACGAGGGATTTTATACTAGT 58.865 40.000 0.00 0.00 0.00 2.57
2333 2422 6.610425 AGGACACGAGGGATTTTATACTAGTT 59.390 38.462 0.00 0.00 0.00 2.24
2334 2423 6.922407 GGACACGAGGGATTTTATACTAGTTC 59.078 42.308 0.00 0.00 0.00 3.01
2335 2424 6.501781 ACACGAGGGATTTTATACTAGTTCG 58.498 40.000 0.00 2.52 0.00 3.95
2336 2425 5.919141 CACGAGGGATTTTATACTAGTTCGG 59.081 44.000 0.00 0.00 0.00 4.30
2337 2426 4.922103 CGAGGGATTTTATACTAGTTCGGC 59.078 45.833 0.00 0.00 0.00 5.54
2338 2427 5.224821 AGGGATTTTATACTAGTTCGGCC 57.775 43.478 0.00 0.00 0.00 6.13
2339 2428 4.041321 AGGGATTTTATACTAGTTCGGCCC 59.959 45.833 0.00 3.83 0.00 5.80
2340 2429 4.321718 GGATTTTATACTAGTTCGGCCCC 58.678 47.826 0.00 0.00 0.00 5.80
2341 2430 4.041321 GGATTTTATACTAGTTCGGCCCCT 59.959 45.833 0.00 0.00 0.00 4.79
2342 2431 5.455755 GGATTTTATACTAGTTCGGCCCCTT 60.456 44.000 0.00 0.00 0.00 3.95
2343 2432 4.677673 TTTATACTAGTTCGGCCCCTTC 57.322 45.455 0.00 0.00 0.00 3.46
2344 2433 1.038280 ATACTAGTTCGGCCCCTTCG 58.962 55.000 0.00 0.00 0.00 3.79
2345 2434 0.034186 TACTAGTTCGGCCCCTTCGA 60.034 55.000 0.00 0.00 34.62 3.71
2346 2435 0.686769 ACTAGTTCGGCCCCTTCGAT 60.687 55.000 0.00 0.00 36.49 3.59
2347 2436 0.249489 CTAGTTCGGCCCCTTCGATG 60.249 60.000 0.00 0.00 36.49 3.84
2348 2437 0.685131 TAGTTCGGCCCCTTCGATGA 60.685 55.000 0.00 0.00 36.49 2.92
2349 2438 1.078708 GTTCGGCCCCTTCGATGAA 60.079 57.895 0.00 0.00 36.49 2.57
2350 2439 1.090052 GTTCGGCCCCTTCGATGAAG 61.090 60.000 0.00 0.00 39.17 3.02
2360 2449 3.268023 CTTCGATGAAGGTAAAGGCCT 57.732 47.619 0.00 0.00 41.41 5.19
2361 2450 4.402056 CTTCGATGAAGGTAAAGGCCTA 57.598 45.455 5.16 0.00 38.03 3.93
2362 2451 3.814005 TCGATGAAGGTAAAGGCCTAC 57.186 47.619 5.16 0.00 38.03 3.18
2363 2452 2.100252 TCGATGAAGGTAAAGGCCTACG 59.900 50.000 5.16 0.00 38.03 3.51
2364 2453 2.159142 CGATGAAGGTAAAGGCCTACGT 60.159 50.000 5.16 0.00 38.03 3.57
2365 2454 3.455327 GATGAAGGTAAAGGCCTACGTC 58.545 50.000 5.16 5.68 38.03 4.34
2366 2455 2.532843 TGAAGGTAAAGGCCTACGTCT 58.467 47.619 5.16 0.00 38.03 4.18
2367 2456 3.700538 TGAAGGTAAAGGCCTACGTCTA 58.299 45.455 5.16 0.00 38.03 2.59
2368 2457 3.698040 TGAAGGTAAAGGCCTACGTCTAG 59.302 47.826 5.16 0.00 38.03 2.43
2369 2458 3.378861 AGGTAAAGGCCTACGTCTAGT 57.621 47.619 5.16 0.00 37.04 2.57
2370 2459 3.706183 AGGTAAAGGCCTACGTCTAGTT 58.294 45.455 5.16 0.00 37.04 2.24
2371 2460 3.446516 AGGTAAAGGCCTACGTCTAGTTG 59.553 47.826 5.16 0.00 37.04 3.16
2372 2461 3.194329 GGTAAAGGCCTACGTCTAGTTGT 59.806 47.826 5.16 0.00 0.00 3.32
2373 2462 3.314541 AAAGGCCTACGTCTAGTTGTG 57.685 47.619 5.16 0.00 0.00 3.33
2374 2463 2.211250 AGGCCTACGTCTAGTTGTGA 57.789 50.000 1.29 0.00 0.00 3.58
2375 2464 2.736347 AGGCCTACGTCTAGTTGTGAT 58.264 47.619 1.29 0.00 0.00 3.06
2376 2465 2.427453 AGGCCTACGTCTAGTTGTGATG 59.573 50.000 1.29 0.00 0.00 3.07
2377 2466 2.481449 GGCCTACGTCTAGTTGTGATGG 60.481 54.545 0.00 0.00 0.00 3.51
2378 2467 2.481449 GCCTACGTCTAGTTGTGATGGG 60.481 54.545 0.00 0.00 0.00 4.00
2379 2468 3.021695 CCTACGTCTAGTTGTGATGGGA 58.978 50.000 0.00 0.00 0.00 4.37
2380 2469 3.637229 CCTACGTCTAGTTGTGATGGGAT 59.363 47.826 0.00 0.00 0.00 3.85
2381 2470 4.099573 CCTACGTCTAGTTGTGATGGGATT 59.900 45.833 0.00 0.00 0.00 3.01
2382 2471 5.301045 CCTACGTCTAGTTGTGATGGGATTA 59.699 44.000 0.00 0.00 0.00 1.75
2383 2472 5.871396 ACGTCTAGTTGTGATGGGATTAT 57.129 39.130 0.00 0.00 0.00 1.28
2384 2473 6.235231 ACGTCTAGTTGTGATGGGATTATT 57.765 37.500 0.00 0.00 0.00 1.40
2385 2474 6.049149 ACGTCTAGTTGTGATGGGATTATTG 58.951 40.000 0.00 0.00 0.00 1.90
2386 2475 5.466728 CGTCTAGTTGTGATGGGATTATTGG 59.533 44.000 0.00 0.00 0.00 3.16
2387 2476 5.765182 GTCTAGTTGTGATGGGATTATTGGG 59.235 44.000 0.00 0.00 0.00 4.12
2388 2477 3.914771 AGTTGTGATGGGATTATTGGGG 58.085 45.455 0.00 0.00 0.00 4.96
2389 2478 3.272020 AGTTGTGATGGGATTATTGGGGT 59.728 43.478 0.00 0.00 0.00 4.95
2390 2479 3.593442 TGTGATGGGATTATTGGGGTC 57.407 47.619 0.00 0.00 0.00 4.46
2391 2480 3.130450 TGTGATGGGATTATTGGGGTCT 58.870 45.455 0.00 0.00 0.00 3.85
2392 2481 3.138283 TGTGATGGGATTATTGGGGTCTC 59.862 47.826 0.00 0.00 0.00 3.36
2393 2482 2.371841 TGATGGGATTATTGGGGTCTCG 59.628 50.000 0.00 0.00 0.00 4.04
2394 2483 2.184088 TGGGATTATTGGGGTCTCGA 57.816 50.000 0.00 0.00 0.00 4.04
2395 2484 2.701551 TGGGATTATTGGGGTCTCGAT 58.298 47.619 0.00 0.00 0.00 3.59
2396 2485 3.864328 TGGGATTATTGGGGTCTCGATA 58.136 45.455 0.00 0.00 0.00 2.92
2397 2486 4.236195 TGGGATTATTGGGGTCTCGATAA 58.764 43.478 0.00 0.00 0.00 1.75
2398 2487 4.041198 TGGGATTATTGGGGTCTCGATAAC 59.959 45.833 0.00 0.00 0.00 1.89
2399 2488 4.565028 GGGATTATTGGGGTCTCGATAACC 60.565 50.000 8.30 8.30 35.97 2.85
2400 2489 4.041198 GGATTATTGGGGTCTCGATAACCA 59.959 45.833 16.45 6.78 38.62 3.67
2401 2490 4.682778 TTATTGGGGTCTCGATAACCAG 57.317 45.455 16.45 0.00 38.62 4.00
2402 2491 1.200519 TTGGGGTCTCGATAACCAGG 58.799 55.000 16.45 0.00 38.62 4.45
2403 2492 0.689745 TGGGGTCTCGATAACCAGGG 60.690 60.000 16.45 0.00 38.62 4.45
2404 2493 0.398098 GGGGTCTCGATAACCAGGGA 60.398 60.000 16.45 0.00 38.62 4.20
2405 2494 1.041437 GGGTCTCGATAACCAGGGAG 58.959 60.000 16.45 0.00 38.62 4.30
2406 2495 0.389757 GGTCTCGATAACCAGGGAGC 59.610 60.000 11.26 0.00 36.75 4.70
2407 2496 1.404843 GTCTCGATAACCAGGGAGCT 58.595 55.000 0.00 0.00 0.00 4.09
2408 2497 2.584236 GTCTCGATAACCAGGGAGCTA 58.416 52.381 0.00 0.00 0.00 3.32
2409 2498 2.957006 GTCTCGATAACCAGGGAGCTAA 59.043 50.000 0.00 0.00 0.00 3.09
2410 2499 3.383825 GTCTCGATAACCAGGGAGCTAAA 59.616 47.826 0.00 0.00 0.00 1.85
2411 2500 3.383825 TCTCGATAACCAGGGAGCTAAAC 59.616 47.826 0.00 0.00 0.00 2.01
2412 2501 3.101437 TCGATAACCAGGGAGCTAAACA 58.899 45.455 0.00 0.00 0.00 2.83
2413 2502 3.118884 TCGATAACCAGGGAGCTAAACAC 60.119 47.826 0.00 0.00 0.00 3.32
2414 2503 2.754946 TAACCAGGGAGCTAAACACG 57.245 50.000 0.00 0.00 0.00 4.49
2415 2504 0.605589 AACCAGGGAGCTAAACACGC 60.606 55.000 0.00 0.00 0.00 5.34
2416 2505 1.296715 CCAGGGAGCTAAACACGCT 59.703 57.895 0.00 0.00 41.15 5.07
2417 2506 0.535335 CCAGGGAGCTAAACACGCTA 59.465 55.000 0.00 0.00 37.96 4.26
2418 2507 1.139058 CCAGGGAGCTAAACACGCTAT 59.861 52.381 0.00 0.00 37.96 2.97
2419 2508 2.205074 CAGGGAGCTAAACACGCTATG 58.795 52.381 0.00 0.00 37.96 2.23
2420 2509 0.938008 GGGAGCTAAACACGCTATGC 59.062 55.000 0.00 0.00 37.96 3.14
2421 2510 0.938008 GGAGCTAAACACGCTATGCC 59.062 55.000 0.00 0.00 37.96 4.40
2422 2511 1.473434 GGAGCTAAACACGCTATGCCT 60.473 52.381 0.00 0.00 37.96 4.75
2423 2512 2.223971 GGAGCTAAACACGCTATGCCTA 60.224 50.000 0.00 0.00 37.96 3.93
2424 2513 3.053455 GAGCTAAACACGCTATGCCTAG 58.947 50.000 0.00 0.00 37.96 3.02
2425 2514 1.527311 GCTAAACACGCTATGCCTAGC 59.473 52.381 10.68 10.68 45.79 3.42
2426 2515 2.803492 GCTAAACACGCTATGCCTAGCT 60.803 50.000 17.39 0.00 46.84 3.32
2427 2516 1.941325 AAACACGCTATGCCTAGCTC 58.059 50.000 17.39 0.00 46.84 4.09
2428 2517 1.115467 AACACGCTATGCCTAGCTCT 58.885 50.000 17.39 1.57 46.84 4.09
2429 2518 0.671251 ACACGCTATGCCTAGCTCTC 59.329 55.000 17.39 0.00 46.84 3.20
2430 2519 0.386605 CACGCTATGCCTAGCTCTCG 60.387 60.000 17.39 5.90 46.84 4.04
2431 2520 0.535328 ACGCTATGCCTAGCTCTCGA 60.535 55.000 17.39 0.00 46.84 4.04
2432 2521 0.167908 CGCTATGCCTAGCTCTCGAG 59.832 60.000 17.39 5.93 46.84 4.04
2433 2522 1.243902 GCTATGCCTAGCTCTCGAGT 58.756 55.000 13.13 0.00 45.78 4.18
2434 2523 1.611491 GCTATGCCTAGCTCTCGAGTT 59.389 52.381 13.13 2.28 45.78 3.01
2435 2524 2.606795 GCTATGCCTAGCTCTCGAGTTG 60.607 54.545 13.13 8.01 45.78 3.16
2436 2525 1.479709 ATGCCTAGCTCTCGAGTTGT 58.520 50.000 13.13 0.31 0.00 3.32
2437 2526 1.257743 TGCCTAGCTCTCGAGTTGTT 58.742 50.000 13.13 7.47 0.00 2.83
2438 2527 1.067565 TGCCTAGCTCTCGAGTTGTTG 60.068 52.381 13.13 1.71 0.00 3.33
2439 2528 1.067495 GCCTAGCTCTCGAGTTGTTGT 60.067 52.381 13.13 0.00 0.00 3.32
2440 2529 2.610727 GCCTAGCTCTCGAGTTGTTGTT 60.611 50.000 13.13 0.29 0.00 2.83
2441 2530 3.654414 CCTAGCTCTCGAGTTGTTGTTT 58.346 45.455 13.13 0.00 0.00 2.83
2442 2531 3.675698 CCTAGCTCTCGAGTTGTTGTTTC 59.324 47.826 13.13 0.00 0.00 2.78
2443 2532 3.460857 AGCTCTCGAGTTGTTGTTTCT 57.539 42.857 13.13 0.00 0.00 2.52
2444 2533 3.798202 AGCTCTCGAGTTGTTGTTTCTT 58.202 40.909 13.13 0.00 0.00 2.52
2445 2534 3.557595 AGCTCTCGAGTTGTTGTTTCTTG 59.442 43.478 13.13 0.00 0.00 3.02
2446 2535 3.309954 GCTCTCGAGTTGTTGTTTCTTGT 59.690 43.478 13.13 0.00 0.00 3.16
2447 2536 4.551024 GCTCTCGAGTTGTTGTTTCTTGTC 60.551 45.833 13.13 0.00 0.00 3.18
2448 2537 3.869246 TCTCGAGTTGTTGTTTCTTGTCC 59.131 43.478 13.13 0.00 0.00 4.02
2449 2538 2.940410 TCGAGTTGTTGTTTCTTGTCCC 59.060 45.455 0.00 0.00 0.00 4.46
2450 2539 2.943033 CGAGTTGTTGTTTCTTGTCCCT 59.057 45.455 0.00 0.00 0.00 4.20
2451 2540 3.242739 CGAGTTGTTGTTTCTTGTCCCTG 60.243 47.826 0.00 0.00 0.00 4.45
2452 2541 3.945285 GAGTTGTTGTTTCTTGTCCCTGA 59.055 43.478 0.00 0.00 0.00 3.86
2453 2542 4.340617 AGTTGTTGTTTCTTGTCCCTGAA 58.659 39.130 0.00 0.00 0.00 3.02
2454 2543 4.157840 AGTTGTTGTTTCTTGTCCCTGAAC 59.842 41.667 0.00 0.00 0.00 3.18
2455 2544 3.020984 TGTTGTTTCTTGTCCCTGAACC 58.979 45.455 0.00 0.00 0.00 3.62
2456 2545 1.961793 TGTTTCTTGTCCCTGAACCG 58.038 50.000 0.00 0.00 0.00 4.44
2457 2546 0.591659 GTTTCTTGTCCCTGAACCGC 59.408 55.000 0.00 0.00 0.00 5.68
2458 2547 0.536460 TTTCTTGTCCCTGAACCGCC 60.536 55.000 0.00 0.00 0.00 6.13
2459 2548 2.725203 TTCTTGTCCCTGAACCGCCG 62.725 60.000 0.00 0.00 0.00 6.46
2460 2549 3.530910 CTTGTCCCTGAACCGCCGT 62.531 63.158 0.00 0.00 0.00 5.68
2461 2550 3.524648 TTGTCCCTGAACCGCCGTC 62.525 63.158 0.00 0.00 0.00 4.79
2483 2572 3.565905 GGTCGTCCCCTTATATACACG 57.434 52.381 0.00 0.00 0.00 4.49
2484 2573 2.229784 GGTCGTCCCCTTATATACACGG 59.770 54.545 0.00 0.00 0.00 4.94
2485 2574 2.229784 GTCGTCCCCTTATATACACGGG 59.770 54.545 4.60 4.60 36.42 5.28
2486 2575 2.158475 TCGTCCCCTTATATACACGGGT 60.158 50.000 0.00 0.00 34.81 5.28
2487 2576 2.629617 CGTCCCCTTATATACACGGGTT 59.370 50.000 0.00 0.00 34.81 4.11
2488 2577 3.826157 CGTCCCCTTATATACACGGGTTA 59.174 47.826 0.00 0.00 34.81 2.85
2489 2578 4.280677 CGTCCCCTTATATACACGGGTTAA 59.719 45.833 0.00 0.00 34.81 2.01
2490 2579 5.541845 GTCCCCTTATATACACGGGTTAAC 58.458 45.833 0.00 0.00 34.81 2.01
2491 2580 4.280677 TCCCCTTATATACACGGGTTAACG 59.719 45.833 0.00 0.00 34.81 3.18
2492 2581 3.989817 CCCTTATATACACGGGTTAACGC 59.010 47.826 12.42 12.42 37.37 4.84
2493 2582 3.989817 CCTTATATACACGGGTTAACGCC 59.010 47.826 16.20 9.60 37.37 5.68
2494 2583 2.531522 ATATACACGGGTTAACGCCC 57.468 50.000 16.20 4.12 45.21 6.13
2509 2598 3.528370 CCCGGCCGGTCTACAGAG 61.528 72.222 40.52 20.46 0.00 3.35
2510 2599 2.754658 CCGGCCGGTCTACAGAGT 60.755 66.667 36.64 0.00 0.00 3.24
2511 2600 2.772691 CCGGCCGGTCTACAGAGTC 61.773 68.421 36.64 0.00 0.00 3.36
2512 2601 2.772691 CGGCCGGTCTACAGAGTCC 61.773 68.421 20.10 0.00 0.00 3.85
2513 2602 2.424733 GGCCGGTCTACAGAGTCCC 61.425 68.421 1.90 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 7.201145 CACACACATATACCTACCACTAGAAC 58.799 42.308 0.00 0.00 0.00 3.01
18 19 4.342951 GGCACACACATATACCTACCACTA 59.657 45.833 0.00 0.00 0.00 2.74
38 39 2.561209 TACTCACCCCTATGAAGGCA 57.439 50.000 0.00 0.00 42.14 4.75
307 308 2.675658 AAGGTAAGTGTGGCCAATGT 57.324 45.000 7.24 0.00 0.00 2.71
470 472 4.088634 AGCCTGATGATAAAACAAGGCAA 58.911 39.130 13.52 0.00 43.04 4.52
618 651 7.409697 ACAACAACGATGCAGATATTGATTAC 58.590 34.615 9.10 0.00 0.00 1.89
631 664 4.095610 GGTGCTAATAACAACAACGATGC 58.904 43.478 0.00 0.00 0.00 3.91
645 678 8.827832 ATAAATGCATATACATGGGTGCTAAT 57.172 30.769 0.00 0.52 38.37 1.73
672 705 6.971527 ACAATGAACATGCCAACAATTATG 57.028 33.333 0.00 0.00 0.00 1.90
800 836 9.991906 ATTTCAAATGAAACAATGACAGAGAAT 57.008 25.926 10.54 0.00 45.55 2.40
981 1028 7.781693 AGCTCCATGATCACCTAAACAAATTAT 59.218 33.333 0.00 0.00 0.00 1.28
1089 1136 3.914426 ACCTCACAGTGAAGTTTGAGT 57.086 42.857 4.41 0.00 34.79 3.41
1094 1141 5.279056 GCTAGAGTAACCTCACAGTGAAGTT 60.279 44.000 19.29 19.29 40.40 2.66
1119 1166 3.010200 ACAGCTTCCTTCCCATTCATC 57.990 47.619 0.00 0.00 0.00 2.92
1371 1458 0.107017 ATCATCGGCAGAAACCCCAG 60.107 55.000 0.00 0.00 0.00 4.45
1706 1793 4.262420 GCCTTGGCCAAAAATAGAAAGACA 60.262 41.667 20.91 0.00 0.00 3.41
1743 1830 4.206375 ACATGACTCACAACATGAAACCA 58.794 39.130 12.90 0.00 44.28 3.67
1856 1945 8.773404 ATGGATTAGTAATAGCGGTCATTAAC 57.227 34.615 0.00 0.00 0.00 2.01
1898 1987 2.897326 AGGGGTGTTTGCCAATAGTTTC 59.103 45.455 0.00 0.00 0.00 2.78
1957 2046 0.033208 GGGAAAGGATGGGTGCATGA 60.033 55.000 0.00 0.00 0.00 3.07
1971 2060 3.512219 AAATGGTGTTACGGAGGGAAA 57.488 42.857 0.00 0.00 0.00 3.13
1972 2061 3.150767 CAAAATGGTGTTACGGAGGGAA 58.849 45.455 0.00 0.00 0.00 3.97
1973 2062 2.106857 ACAAAATGGTGTTACGGAGGGA 59.893 45.455 0.00 0.00 0.00 4.20
1974 2063 2.486592 GACAAAATGGTGTTACGGAGGG 59.513 50.000 0.00 0.00 0.00 4.30
1975 2064 3.408634 AGACAAAATGGTGTTACGGAGG 58.591 45.455 0.00 0.00 0.00 4.30
1976 2065 5.432885 AAAGACAAAATGGTGTTACGGAG 57.567 39.130 0.00 0.00 0.00 4.63
1977 2066 6.939132 TTAAAGACAAAATGGTGTTACGGA 57.061 33.333 0.00 0.00 0.00 4.69
1978 2067 7.988904 TTTTAAAGACAAAATGGTGTTACGG 57.011 32.000 0.00 0.00 0.00 4.02
1979 2068 8.861101 TGTTTTTAAAGACAAAATGGTGTTACG 58.139 29.630 8.99 0.00 0.00 3.18
2026 2115 9.329913 CGATTCTTTCTAGTAAATTGTTTGTGG 57.670 33.333 0.00 0.00 0.00 4.17
2027 2116 9.878599 ACGATTCTTTCTAGTAAATTGTTTGTG 57.121 29.630 0.00 0.00 0.00 3.33
2028 2117 9.878599 CACGATTCTTTCTAGTAAATTGTTTGT 57.121 29.630 0.00 0.00 0.00 2.83
2029 2118 9.878599 ACACGATTCTTTCTAGTAAATTGTTTG 57.121 29.630 0.00 0.00 0.00 2.93
2030 2119 9.878599 CACACGATTCTTTCTAGTAAATTGTTT 57.121 29.630 0.00 0.00 0.00 2.83
2031 2120 8.504005 CCACACGATTCTTTCTAGTAAATTGTT 58.496 33.333 0.00 0.00 0.00 2.83
2032 2121 7.119262 CCCACACGATTCTTTCTAGTAAATTGT 59.881 37.037 0.00 0.00 0.00 2.71
2033 2122 7.333423 TCCCACACGATTCTTTCTAGTAAATTG 59.667 37.037 0.00 0.00 0.00 2.32
2034 2123 7.391620 TCCCACACGATTCTTTCTAGTAAATT 58.608 34.615 0.00 0.00 0.00 1.82
2035 2124 6.942976 TCCCACACGATTCTTTCTAGTAAAT 58.057 36.000 0.00 0.00 0.00 1.40
2036 2125 6.349243 TCCCACACGATTCTTTCTAGTAAA 57.651 37.500 0.00 0.00 0.00 2.01
2037 2126 5.988310 TCCCACACGATTCTTTCTAGTAA 57.012 39.130 0.00 0.00 0.00 2.24
2038 2127 5.655090 TCATCCCACACGATTCTTTCTAGTA 59.345 40.000 0.00 0.00 0.00 1.82
2039 2128 4.466370 TCATCCCACACGATTCTTTCTAGT 59.534 41.667 0.00 0.00 0.00 2.57
2040 2129 5.011090 TCATCCCACACGATTCTTTCTAG 57.989 43.478 0.00 0.00 0.00 2.43
2041 2130 5.614324 ATCATCCCACACGATTCTTTCTA 57.386 39.130 0.00 0.00 0.00 2.10
2042 2131 3.981071 TCATCCCACACGATTCTTTCT 57.019 42.857 0.00 0.00 0.00 2.52
2043 2132 7.962964 TTATATCATCCCACACGATTCTTTC 57.037 36.000 0.00 0.00 0.00 2.62
2044 2133 8.924511 ATTTATATCATCCCACACGATTCTTT 57.075 30.769 0.00 0.00 0.00 2.52
2046 2135 9.823647 GATATTTATATCATCCCACACGATTCT 57.176 33.333 5.13 0.00 39.13 2.40
2047 2136 9.823647 AGATATTTATATCATCCCACACGATTC 57.176 33.333 11.27 0.00 41.21 2.52
2049 2138 9.605275 CAAGATATTTATATCATCCCACACGAT 57.395 33.333 11.27 0.00 41.21 3.73
2050 2139 8.040727 CCAAGATATTTATATCATCCCACACGA 58.959 37.037 11.27 0.00 41.21 4.35
2051 2140 7.201644 GCCAAGATATTTATATCATCCCACACG 60.202 40.741 11.27 0.00 41.21 4.49
2052 2141 7.201644 CGCCAAGATATTTATATCATCCCACAC 60.202 40.741 11.27 0.00 41.21 3.82
2053 2142 6.823182 CGCCAAGATATTTATATCATCCCACA 59.177 38.462 11.27 0.00 41.21 4.17
2054 2143 6.238484 GCGCCAAGATATTTATATCATCCCAC 60.238 42.308 11.27 0.00 41.21 4.61
2055 2144 5.822519 GCGCCAAGATATTTATATCATCCCA 59.177 40.000 11.27 0.00 41.21 4.37
2056 2145 5.822519 TGCGCCAAGATATTTATATCATCCC 59.177 40.000 4.18 0.00 41.21 3.85
2057 2146 6.238484 GGTGCGCCAAGATATTTATATCATCC 60.238 42.308 12.58 0.00 37.20 3.51
2058 2147 6.316140 TGGTGCGCCAAGATATTTATATCATC 59.684 38.462 18.77 0.00 42.83 2.92
2059 2148 6.179756 TGGTGCGCCAAGATATTTATATCAT 58.820 36.000 18.77 0.00 42.83 2.45
2060 2149 5.555966 TGGTGCGCCAAGATATTTATATCA 58.444 37.500 18.77 0.00 42.83 2.15
2075 2164 1.817099 CCAGAGAAGATGGTGCGCC 60.817 63.158 10.11 10.11 32.85 6.53
2076 2165 2.467826 GCCAGAGAAGATGGTGCGC 61.468 63.158 0.00 0.00 40.17 6.09
2077 2166 0.392193 AAGCCAGAGAAGATGGTGCG 60.392 55.000 0.00 0.00 40.17 5.34
2078 2167 2.698855 TAAGCCAGAGAAGATGGTGC 57.301 50.000 0.00 0.00 40.17 5.01
2079 2168 2.877168 GCATAAGCCAGAGAAGATGGTG 59.123 50.000 0.00 0.00 40.17 4.17
2080 2169 2.507058 TGCATAAGCCAGAGAAGATGGT 59.493 45.455 0.00 0.00 40.17 3.55
2081 2170 3.139850 CTGCATAAGCCAGAGAAGATGG 58.860 50.000 0.00 0.00 41.13 3.51
2082 2171 3.139850 CCTGCATAAGCCAGAGAAGATG 58.860 50.000 0.00 0.00 41.13 2.90
2083 2172 3.044156 TCCTGCATAAGCCAGAGAAGAT 58.956 45.455 0.00 0.00 41.13 2.40
2084 2173 2.470990 TCCTGCATAAGCCAGAGAAGA 58.529 47.619 0.00 0.00 41.13 2.87
2085 2174 2.996249 TCCTGCATAAGCCAGAGAAG 57.004 50.000 0.00 0.00 41.13 2.85
2086 2175 2.681976 GCTTCCTGCATAAGCCAGAGAA 60.682 50.000 18.57 0.00 42.85 2.87
2087 2176 1.134280 GCTTCCTGCATAAGCCAGAGA 60.134 52.381 18.57 0.00 42.85 3.10
2088 2177 1.307097 GCTTCCTGCATAAGCCAGAG 58.693 55.000 18.57 0.00 42.85 3.35
2089 2178 3.483954 GCTTCCTGCATAAGCCAGA 57.516 52.632 18.57 0.00 42.85 3.86
2094 2183 2.621338 TGACGAAGCTTCCTGCATAAG 58.379 47.619 20.62 6.53 45.94 1.73
2095 2184 2.760634 TGACGAAGCTTCCTGCATAA 57.239 45.000 20.62 0.00 45.94 1.90
2096 2185 2.432146 AGATGACGAAGCTTCCTGCATA 59.568 45.455 20.62 2.29 45.94 3.14
2097 2186 1.209019 AGATGACGAAGCTTCCTGCAT 59.791 47.619 20.62 19.07 45.94 3.96
2098 2187 0.610174 AGATGACGAAGCTTCCTGCA 59.390 50.000 20.62 15.45 45.94 4.41
2099 2188 2.197577 GTAGATGACGAAGCTTCCTGC 58.802 52.381 20.62 10.85 43.29 4.85
2100 2189 3.119316 ACTGTAGATGACGAAGCTTCCTG 60.119 47.826 20.62 10.16 0.00 3.86
2101 2190 3.093057 ACTGTAGATGACGAAGCTTCCT 58.907 45.455 20.62 13.27 0.00 3.36
2102 2191 3.440228 GACTGTAGATGACGAAGCTTCC 58.560 50.000 20.62 8.26 0.00 3.46
2103 2192 3.119459 TGGACTGTAGATGACGAAGCTTC 60.119 47.826 16.84 16.84 0.00 3.86
2104 2193 2.826128 TGGACTGTAGATGACGAAGCTT 59.174 45.455 0.00 0.00 0.00 3.74
2105 2194 2.164624 GTGGACTGTAGATGACGAAGCT 59.835 50.000 0.00 0.00 0.00 3.74
2106 2195 2.164624 AGTGGACTGTAGATGACGAAGC 59.835 50.000 0.00 0.00 0.00 3.86
2107 2196 3.763902 CAGTGGACTGTAGATGACGAAG 58.236 50.000 0.00 0.00 39.09 3.79
2108 2197 2.094700 GCAGTGGACTGTAGATGACGAA 60.095 50.000 8.54 0.00 45.45 3.85
2109 2198 1.472878 GCAGTGGACTGTAGATGACGA 59.527 52.381 8.54 0.00 45.45 4.20
2110 2199 1.469940 GGCAGTGGACTGTAGATGACG 60.470 57.143 8.54 0.00 45.45 4.35
2111 2200 1.134670 GGGCAGTGGACTGTAGATGAC 60.135 57.143 8.54 0.00 45.45 3.06
2112 2201 1.195115 GGGCAGTGGACTGTAGATGA 58.805 55.000 8.54 0.00 45.45 2.92
2113 2202 0.179000 GGGGCAGTGGACTGTAGATG 59.821 60.000 8.54 0.00 45.45 2.90
2114 2203 0.983378 GGGGGCAGTGGACTGTAGAT 60.983 60.000 8.54 0.00 45.45 1.98
2115 2204 1.612442 GGGGGCAGTGGACTGTAGA 60.612 63.158 8.54 0.00 45.45 2.59
2116 2205 2.990479 GGGGGCAGTGGACTGTAG 59.010 66.667 8.54 0.00 45.45 2.74
2117 2206 3.000819 CGGGGGCAGTGGACTGTA 61.001 66.667 8.54 0.00 45.45 2.74
2123 2212 4.659172 TTCAAGCGGGGGCAGTGG 62.659 66.667 0.00 0.00 0.00 4.00
2124 2213 3.365265 GTTCAAGCGGGGGCAGTG 61.365 66.667 0.00 0.00 0.00 3.66
2125 2214 4.660938 GGTTCAAGCGGGGGCAGT 62.661 66.667 0.00 0.00 0.00 4.40
2126 2215 4.659172 TGGTTCAAGCGGGGGCAG 62.659 66.667 0.00 0.00 0.00 4.85
2127 2216 4.966787 GTGGTTCAAGCGGGGGCA 62.967 66.667 0.00 0.00 0.00 5.36
2128 2217 4.966787 TGTGGTTCAAGCGGGGGC 62.967 66.667 0.00 0.00 0.00 5.80
2129 2218 2.976494 AAGTGTGGTTCAAGCGGGGG 62.976 60.000 0.00 0.00 0.00 5.40
2130 2219 1.528309 AAGTGTGGTTCAAGCGGGG 60.528 57.895 0.00 0.00 0.00 5.73
2131 2220 1.101049 ACAAGTGTGGTTCAAGCGGG 61.101 55.000 0.00 0.00 0.00 6.13
2132 2221 0.029300 CACAAGTGTGGTTCAAGCGG 59.971 55.000 3.39 0.00 42.10 5.52
2133 2222 3.532138 CACAAGTGTGGTTCAAGCG 57.468 52.632 3.39 0.00 42.10 4.68
2145 2234 1.001378 GCGAGAAATTGGCACACAAGT 60.001 47.619 0.00 0.00 43.48 3.16
2146 2235 1.689959 GCGAGAAATTGGCACACAAG 58.310 50.000 0.00 0.00 43.48 3.16
2147 2236 0.040514 CGCGAGAAATTGGCACACAA 60.041 50.000 0.00 0.00 44.54 3.33
2148 2237 1.573932 CGCGAGAAATTGGCACACA 59.426 52.632 0.00 0.00 39.29 3.72
2149 2238 1.154225 CCGCGAGAAATTGGCACAC 60.154 57.895 8.23 0.00 39.29 3.82
2150 2239 2.976840 GCCGCGAGAAATTGGCACA 61.977 57.895 8.23 0.00 46.76 4.57
2151 2240 2.202479 GCCGCGAGAAATTGGCAC 60.202 61.111 8.23 0.00 46.76 5.01
2154 2243 2.485122 GGTGCCGCGAGAAATTGG 59.515 61.111 8.23 0.00 0.00 3.16
2155 2244 2.098298 CGGTGCCGCGAGAAATTG 59.902 61.111 8.23 0.00 0.00 2.32
2156 2245 2.047655 TCGGTGCCGCGAGAAATT 60.048 55.556 8.23 0.00 39.59 1.82
2157 2246 2.509336 CTCGGTGCCGCGAGAAAT 60.509 61.111 8.23 0.00 39.59 2.17
2164 2253 1.973137 TTTTTATCGCTCGGTGCCGC 61.973 55.000 5.64 0.00 39.59 6.53
2165 2254 2.083183 TTTTTATCGCTCGGTGCCG 58.917 52.632 3.94 3.94 38.78 5.69
2187 2276 5.220605 GGGATATAGATATTTTTGCGGTCGC 60.221 44.000 8.54 8.54 42.35 5.19
2188 2277 5.293569 GGGGATATAGATATTTTTGCGGTCG 59.706 44.000 0.00 0.00 0.00 4.79
2189 2278 5.293569 CGGGGATATAGATATTTTTGCGGTC 59.706 44.000 0.00 0.00 0.00 4.79
2190 2279 5.183228 CGGGGATATAGATATTTTTGCGGT 58.817 41.667 0.00 0.00 0.00 5.68
2191 2280 4.035208 GCGGGGATATAGATATTTTTGCGG 59.965 45.833 0.00 0.00 0.00 5.69
2192 2281 4.876107 AGCGGGGATATAGATATTTTTGCG 59.124 41.667 0.00 0.00 0.00 4.85
2193 2282 6.151144 ACAAGCGGGGATATAGATATTTTTGC 59.849 38.462 0.00 0.00 0.00 3.68
2194 2283 7.413000 CGACAAGCGGGGATATAGATATTTTTG 60.413 40.741 0.00 0.00 36.03 2.44
2195 2284 6.594159 CGACAAGCGGGGATATAGATATTTTT 59.406 38.462 0.00 0.00 36.03 1.94
2196 2285 6.106673 CGACAAGCGGGGATATAGATATTTT 58.893 40.000 0.00 0.00 36.03 1.82
2197 2286 5.187186 ACGACAAGCGGGGATATAGATATTT 59.813 40.000 0.00 0.00 46.49 1.40
2198 2287 4.710375 ACGACAAGCGGGGATATAGATATT 59.290 41.667 0.00 0.00 46.49 1.28
2199 2288 4.279145 ACGACAAGCGGGGATATAGATAT 58.721 43.478 0.00 0.00 46.49 1.63
2200 2289 3.693085 GACGACAAGCGGGGATATAGATA 59.307 47.826 0.00 0.00 46.49 1.98
2201 2290 2.492484 GACGACAAGCGGGGATATAGAT 59.508 50.000 0.00 0.00 46.49 1.98
2202 2291 1.884579 GACGACAAGCGGGGATATAGA 59.115 52.381 0.00 0.00 46.49 1.98
2203 2292 1.401148 CGACGACAAGCGGGGATATAG 60.401 57.143 0.00 0.00 46.49 1.31
2204 2293 0.594602 CGACGACAAGCGGGGATATA 59.405 55.000 0.00 0.00 46.49 0.86
2205 2294 1.105167 TCGACGACAAGCGGGGATAT 61.105 55.000 0.00 0.00 46.49 1.63
2206 2295 1.314534 TTCGACGACAAGCGGGGATA 61.315 55.000 0.00 0.00 46.49 2.59
2207 2296 2.162338 TTTCGACGACAAGCGGGGAT 62.162 55.000 0.00 0.00 46.49 3.85
2208 2297 2.162338 ATTTCGACGACAAGCGGGGA 62.162 55.000 0.00 0.00 46.49 4.81
2209 2298 0.458889 TATTTCGACGACAAGCGGGG 60.459 55.000 0.00 0.00 46.49 5.73
2210 2299 1.521423 GATATTTCGACGACAAGCGGG 59.479 52.381 0.00 0.00 46.49 6.13
2211 2300 2.034842 GTGATATTTCGACGACAAGCGG 60.035 50.000 0.00 0.00 46.49 5.52
2213 2302 2.597305 ACGTGATATTTCGACGACAAGC 59.403 45.455 0.00 0.00 36.90 4.01
2214 2303 3.849708 TGACGTGATATTTCGACGACAAG 59.150 43.478 0.00 0.00 35.45 3.16
2215 2304 3.824151 TGACGTGATATTTCGACGACAA 58.176 40.909 0.00 0.00 35.45 3.18
2216 2305 3.125658 TCTGACGTGATATTTCGACGACA 59.874 43.478 0.00 11.29 36.58 4.35
2217 2306 3.677601 TCTGACGTGATATTTCGACGAC 58.322 45.455 0.00 8.42 36.90 4.34
2218 2307 4.201881 ACATCTGACGTGATATTTCGACGA 60.202 41.667 0.00 0.00 36.90 4.20
2219 2308 4.035684 ACATCTGACGTGATATTTCGACG 58.964 43.478 0.00 0.00 39.03 5.12
2220 2309 4.441415 GGACATCTGACGTGATATTTCGAC 59.559 45.833 0.00 2.83 0.00 4.20
2221 2310 4.338400 AGGACATCTGACGTGATATTTCGA 59.662 41.667 0.00 0.00 0.00 3.71
2222 2311 4.611943 AGGACATCTGACGTGATATTTCG 58.388 43.478 0.00 0.20 0.00 3.46
2223 2312 5.592054 TGAGGACATCTGACGTGATATTTC 58.408 41.667 0.00 0.00 0.00 2.17
2224 2313 5.598416 TGAGGACATCTGACGTGATATTT 57.402 39.130 0.00 0.00 0.00 1.40
2225 2314 5.302823 TCATGAGGACATCTGACGTGATATT 59.697 40.000 0.00 0.00 34.15 1.28
2226 2315 4.829492 TCATGAGGACATCTGACGTGATAT 59.171 41.667 0.00 0.00 34.15 1.63
2227 2316 4.207165 TCATGAGGACATCTGACGTGATA 58.793 43.478 0.00 0.00 34.15 2.15
2228 2317 3.026694 TCATGAGGACATCTGACGTGAT 58.973 45.455 0.00 0.00 34.15 3.06
2229 2318 2.446435 TCATGAGGACATCTGACGTGA 58.554 47.619 0.00 0.00 34.15 4.35
2230 2319 2.947448 TCATGAGGACATCTGACGTG 57.053 50.000 0.00 0.00 34.15 4.49
2231 2320 3.368843 CCTTTCATGAGGACATCTGACGT 60.369 47.826 0.00 0.00 39.25 4.34
2232 2321 3.118992 TCCTTTCATGAGGACATCTGACG 60.119 47.826 0.00 0.00 40.87 4.35
2233 2322 4.478206 TCCTTTCATGAGGACATCTGAC 57.522 45.455 0.00 0.00 40.87 3.51
2241 2330 4.082190 CACGACTAAGTCCTTTCATGAGGA 60.082 45.833 0.00 0.00 43.47 3.71
2242 2331 4.177026 CACGACTAAGTCCTTTCATGAGG 58.823 47.826 0.00 0.00 38.20 3.86
2243 2332 4.082190 TCCACGACTAAGTCCTTTCATGAG 60.082 45.833 0.00 0.00 0.00 2.90
2244 2333 3.830178 TCCACGACTAAGTCCTTTCATGA 59.170 43.478 0.00 0.00 0.00 3.07
2245 2334 4.177026 CTCCACGACTAAGTCCTTTCATG 58.823 47.826 0.00 0.00 0.00 3.07
2246 2335 3.368531 GCTCCACGACTAAGTCCTTTCAT 60.369 47.826 0.00 0.00 0.00 2.57
2247 2336 2.029290 GCTCCACGACTAAGTCCTTTCA 60.029 50.000 0.00 0.00 0.00 2.69
2248 2337 2.608268 GCTCCACGACTAAGTCCTTTC 58.392 52.381 0.00 0.00 0.00 2.62
2249 2338 1.275573 GGCTCCACGACTAAGTCCTTT 59.724 52.381 0.00 0.00 0.00 3.11
2250 2339 0.896226 GGCTCCACGACTAAGTCCTT 59.104 55.000 0.00 0.00 0.00 3.36
2251 2340 0.251653 TGGCTCCACGACTAAGTCCT 60.252 55.000 0.00 0.00 0.00 3.85
2252 2341 0.824759 ATGGCTCCACGACTAAGTCC 59.175 55.000 0.00 0.00 0.00 3.85
2253 2342 1.534175 CGATGGCTCCACGACTAAGTC 60.534 57.143 0.00 0.00 0.00 3.01
2254 2343 0.456221 CGATGGCTCCACGACTAAGT 59.544 55.000 0.00 0.00 0.00 2.24
2255 2344 0.872021 GCGATGGCTCCACGACTAAG 60.872 60.000 12.62 0.00 35.83 2.18
2256 2345 1.141019 GCGATGGCTCCACGACTAA 59.859 57.895 12.62 0.00 35.83 2.24
2257 2346 2.805546 GCGATGGCTCCACGACTA 59.194 61.111 12.62 0.00 35.83 2.59
2258 2347 4.498520 CGCGATGGCTCCACGACT 62.499 66.667 0.00 0.00 36.88 4.18
2259 2348 4.492160 TCGCGATGGCTCCACGAC 62.492 66.667 3.71 5.67 36.88 4.34
2260 2349 4.492160 GTCGCGATGGCTCCACGA 62.492 66.667 14.06 5.77 36.88 4.35
2265 2354 3.420214 TAACCCGTCGCGATGGCTC 62.420 63.158 36.71 12.65 36.15 4.70
2266 2355 3.426117 CTAACCCGTCGCGATGGCT 62.426 63.158 36.71 27.65 36.15 4.75
2267 2356 2.960129 CTAACCCGTCGCGATGGC 60.960 66.667 36.71 13.43 36.15 4.40
2268 2357 2.901051 AAGCTAACCCGTCGCGATGG 62.901 60.000 35.49 35.49 37.23 3.51
2269 2358 0.248743 TAAGCTAACCCGTCGCGATG 60.249 55.000 21.42 21.42 0.00 3.84
2270 2359 0.457035 TTAAGCTAACCCGTCGCGAT 59.543 50.000 14.06 0.00 0.00 4.58
2271 2360 0.243365 TTTAAGCTAACCCGTCGCGA 59.757 50.000 3.71 3.71 0.00 5.87
2272 2361 0.643820 CTTTAAGCTAACCCGTCGCG 59.356 55.000 0.00 0.00 0.00 5.87
2273 2362 1.004595 CCTTTAAGCTAACCCGTCGC 58.995 55.000 0.00 0.00 0.00 5.19
2274 2363 1.648504 CCCTTTAAGCTAACCCGTCG 58.351 55.000 0.00 0.00 0.00 5.12
2275 2364 1.280133 ACCCCTTTAAGCTAACCCGTC 59.720 52.381 0.00 0.00 0.00 4.79
2276 2365 1.365293 ACCCCTTTAAGCTAACCCGT 58.635 50.000 0.00 0.00 0.00 5.28
2277 2366 2.502142 AACCCCTTTAAGCTAACCCG 57.498 50.000 0.00 0.00 0.00 5.28
2278 2367 4.463891 GGTTTAACCCCTTTAAGCTAACCC 59.536 45.833 2.04 0.00 32.80 4.11
2279 2368 4.156556 CGGTTTAACCCCTTTAAGCTAACC 59.843 45.833 8.72 0.00 33.75 2.85
2280 2369 4.156556 CCGGTTTAACCCCTTTAAGCTAAC 59.843 45.833 8.72 0.00 33.75 2.34
2281 2370 4.042684 TCCGGTTTAACCCCTTTAAGCTAA 59.957 41.667 8.72 0.00 33.75 3.09
2282 2371 3.586618 TCCGGTTTAACCCCTTTAAGCTA 59.413 43.478 8.72 0.00 33.75 3.32
2283 2372 2.376181 TCCGGTTTAACCCCTTTAAGCT 59.624 45.455 8.72 0.00 33.75 3.74
2284 2373 2.489329 GTCCGGTTTAACCCCTTTAAGC 59.511 50.000 8.72 0.00 33.75 3.09
2285 2374 3.753815 TGTCCGGTTTAACCCCTTTAAG 58.246 45.455 8.72 0.00 33.75 1.85
2286 2375 3.872459 TGTCCGGTTTAACCCCTTTAA 57.128 42.857 8.72 0.00 33.75 1.52
2287 2376 3.872459 TTGTCCGGTTTAACCCCTTTA 57.128 42.857 8.72 0.00 33.75 1.85
2288 2377 2.752075 TTGTCCGGTTTAACCCCTTT 57.248 45.000 8.72 0.00 33.75 3.11
2289 2378 2.589720 CTTTGTCCGGTTTAACCCCTT 58.410 47.619 8.72 0.00 33.75 3.95
2290 2379 1.202964 CCTTTGTCCGGTTTAACCCCT 60.203 52.381 8.72 0.00 33.75 4.79
2291 2380 1.202915 TCCTTTGTCCGGTTTAACCCC 60.203 52.381 8.72 0.00 33.75 4.95
2292 2381 1.881973 GTCCTTTGTCCGGTTTAACCC 59.118 52.381 8.72 0.00 33.75 4.11
2293 2382 2.291465 GTGTCCTTTGTCCGGTTTAACC 59.709 50.000 3.64 3.64 34.05 2.85
2294 2383 2.032636 CGTGTCCTTTGTCCGGTTTAAC 60.033 50.000 0.00 0.00 0.00 2.01
2295 2384 2.158986 TCGTGTCCTTTGTCCGGTTTAA 60.159 45.455 0.00 0.00 0.00 1.52
2296 2385 1.411977 TCGTGTCCTTTGTCCGGTTTA 59.588 47.619 0.00 0.00 0.00 2.01
2297 2386 0.178533 TCGTGTCCTTTGTCCGGTTT 59.821 50.000 0.00 0.00 0.00 3.27
2298 2387 0.249741 CTCGTGTCCTTTGTCCGGTT 60.250 55.000 0.00 0.00 0.00 4.44
2299 2388 1.366366 CTCGTGTCCTTTGTCCGGT 59.634 57.895 0.00 0.00 0.00 5.28
2300 2389 1.374252 CCTCGTGTCCTTTGTCCGG 60.374 63.158 0.00 0.00 0.00 5.14
2301 2390 1.374252 CCCTCGTGTCCTTTGTCCG 60.374 63.158 0.00 0.00 0.00 4.79
2302 2391 0.613777 ATCCCTCGTGTCCTTTGTCC 59.386 55.000 0.00 0.00 0.00 4.02
2303 2392 2.474410 AATCCCTCGTGTCCTTTGTC 57.526 50.000 0.00 0.00 0.00 3.18
2304 2393 2.951229 AAATCCCTCGTGTCCTTTGT 57.049 45.000 0.00 0.00 0.00 2.83
2305 2394 6.113411 AGTATAAAATCCCTCGTGTCCTTTG 58.887 40.000 0.00 0.00 0.00 2.77
2306 2395 6.309389 AGTATAAAATCCCTCGTGTCCTTT 57.691 37.500 0.00 0.00 0.00 3.11
2307 2396 5.952347 AGTATAAAATCCCTCGTGTCCTT 57.048 39.130 0.00 0.00 0.00 3.36
2308 2397 6.134754 ACTAGTATAAAATCCCTCGTGTCCT 58.865 40.000 0.00 0.00 0.00 3.85
2309 2398 6.402456 ACTAGTATAAAATCCCTCGTGTCC 57.598 41.667 0.00 0.00 0.00 4.02
2310 2399 6.636044 CGAACTAGTATAAAATCCCTCGTGTC 59.364 42.308 0.00 0.00 0.00 3.67
2311 2400 6.460676 CCGAACTAGTATAAAATCCCTCGTGT 60.461 42.308 0.00 0.00 0.00 4.49
2312 2401 5.919141 CCGAACTAGTATAAAATCCCTCGTG 59.081 44.000 0.00 0.00 0.00 4.35
2313 2402 5.508657 GCCGAACTAGTATAAAATCCCTCGT 60.509 44.000 0.00 0.00 0.00 4.18
2314 2403 4.922103 GCCGAACTAGTATAAAATCCCTCG 59.078 45.833 0.00 0.00 0.00 4.63
2315 2404 5.236282 GGCCGAACTAGTATAAAATCCCTC 58.764 45.833 0.00 0.00 0.00 4.30
2316 2405 4.041321 GGGCCGAACTAGTATAAAATCCCT 59.959 45.833 0.00 0.00 0.00 4.20
2317 2406 4.321718 GGGCCGAACTAGTATAAAATCCC 58.678 47.826 0.00 0.00 0.00 3.85
2318 2407 4.041321 AGGGGCCGAACTAGTATAAAATCC 59.959 45.833 0.00 0.00 0.00 3.01
2319 2408 5.224821 AGGGGCCGAACTAGTATAAAATC 57.775 43.478 0.00 0.00 0.00 2.17
2320 2409 5.618236 GAAGGGGCCGAACTAGTATAAAAT 58.382 41.667 0.00 0.00 0.00 1.82
2321 2410 4.441913 CGAAGGGGCCGAACTAGTATAAAA 60.442 45.833 0.00 0.00 0.00 1.52
2322 2411 3.068590 CGAAGGGGCCGAACTAGTATAAA 59.931 47.826 0.00 0.00 0.00 1.40
2323 2412 2.624838 CGAAGGGGCCGAACTAGTATAA 59.375 50.000 0.00 0.00 0.00 0.98
2324 2413 2.158623 TCGAAGGGGCCGAACTAGTATA 60.159 50.000 0.00 0.00 32.64 1.47
2325 2414 1.038280 CGAAGGGGCCGAACTAGTAT 58.962 55.000 0.00 0.00 0.00 2.12
2326 2415 0.034186 TCGAAGGGGCCGAACTAGTA 60.034 55.000 0.00 0.00 32.64 1.82
2327 2416 0.686769 ATCGAAGGGGCCGAACTAGT 60.687 55.000 0.00 0.00 39.62 2.57
2328 2417 0.249489 CATCGAAGGGGCCGAACTAG 60.249 60.000 0.00 0.00 39.62 2.57
2329 2418 0.685131 TCATCGAAGGGGCCGAACTA 60.685 55.000 0.00 0.00 39.62 2.24
2330 2419 1.550130 TTCATCGAAGGGGCCGAACT 61.550 55.000 0.00 0.00 39.62 3.01
2331 2420 1.078708 TTCATCGAAGGGGCCGAAC 60.079 57.895 0.00 0.00 39.62 3.95
2332 2421 1.220749 CTTCATCGAAGGGGCCGAA 59.779 57.895 0.00 0.00 39.62 4.30
2333 2422 2.900273 CTTCATCGAAGGGGCCGA 59.100 61.111 0.00 0.00 40.53 5.54
2340 2429 3.268023 AGGCCTTTACCTTCATCGAAG 57.732 47.619 0.00 0.00 36.28 3.79
2341 2430 3.429822 CGTAGGCCTTTACCTTCATCGAA 60.430 47.826 12.58 0.00 41.50 3.71
2342 2431 2.100252 CGTAGGCCTTTACCTTCATCGA 59.900 50.000 12.58 0.00 41.50 3.59
2343 2432 2.159142 ACGTAGGCCTTTACCTTCATCG 60.159 50.000 12.58 3.55 41.50 3.84
2344 2433 3.132467 AGACGTAGGCCTTTACCTTCATC 59.868 47.826 12.58 0.00 41.50 2.92
2345 2434 3.105283 AGACGTAGGCCTTTACCTTCAT 58.895 45.455 12.58 0.00 41.50 2.57
2346 2435 2.532843 AGACGTAGGCCTTTACCTTCA 58.467 47.619 12.58 0.00 41.50 3.02
2347 2436 3.698539 ACTAGACGTAGGCCTTTACCTTC 59.301 47.826 12.58 1.99 41.50 3.46
2348 2437 3.706183 ACTAGACGTAGGCCTTTACCTT 58.294 45.455 12.58 0.00 41.50 3.50
2349 2438 3.378861 ACTAGACGTAGGCCTTTACCT 57.621 47.619 12.58 6.61 44.31 3.08
2350 2439 3.194329 ACAACTAGACGTAGGCCTTTACC 59.806 47.826 12.58 0.00 0.00 2.85
2351 2440 4.082571 TCACAACTAGACGTAGGCCTTTAC 60.083 45.833 12.58 2.12 0.00 2.01
2352 2441 4.081406 TCACAACTAGACGTAGGCCTTTA 58.919 43.478 12.58 0.00 0.00 1.85
2353 2442 2.895404 TCACAACTAGACGTAGGCCTTT 59.105 45.455 12.58 0.00 0.00 3.11
2354 2443 2.522185 TCACAACTAGACGTAGGCCTT 58.478 47.619 12.58 0.00 0.00 4.35
2355 2444 2.211250 TCACAACTAGACGTAGGCCT 57.789 50.000 11.78 11.78 0.00 5.19
2356 2445 2.481449 CCATCACAACTAGACGTAGGCC 60.481 54.545 0.00 0.00 0.00 5.19
2357 2446 2.481449 CCCATCACAACTAGACGTAGGC 60.481 54.545 0.00 0.00 0.00 3.93
2358 2447 3.021695 TCCCATCACAACTAGACGTAGG 58.978 50.000 0.00 0.00 0.00 3.18
2359 2448 4.920640 ATCCCATCACAACTAGACGTAG 57.079 45.455 0.00 0.00 0.00 3.51
2360 2449 6.971726 ATAATCCCATCACAACTAGACGTA 57.028 37.500 0.00 0.00 0.00 3.57
2361 2450 5.871396 ATAATCCCATCACAACTAGACGT 57.129 39.130 0.00 0.00 0.00 4.34
2362 2451 5.466728 CCAATAATCCCATCACAACTAGACG 59.533 44.000 0.00 0.00 0.00 4.18
2363 2452 5.765182 CCCAATAATCCCATCACAACTAGAC 59.235 44.000 0.00 0.00 0.00 2.59
2364 2453 5.163099 CCCCAATAATCCCATCACAACTAGA 60.163 44.000 0.00 0.00 0.00 2.43
2365 2454 5.072741 CCCCAATAATCCCATCACAACTAG 58.927 45.833 0.00 0.00 0.00 2.57
2366 2455 4.480537 ACCCCAATAATCCCATCACAACTA 59.519 41.667 0.00 0.00 0.00 2.24
2367 2456 3.272020 ACCCCAATAATCCCATCACAACT 59.728 43.478 0.00 0.00 0.00 3.16
2368 2457 3.636764 GACCCCAATAATCCCATCACAAC 59.363 47.826 0.00 0.00 0.00 3.32
2369 2458 3.531397 AGACCCCAATAATCCCATCACAA 59.469 43.478 0.00 0.00 0.00 3.33
2370 2459 3.130450 AGACCCCAATAATCCCATCACA 58.870 45.455 0.00 0.00 0.00 3.58
2371 2460 3.756117 GAGACCCCAATAATCCCATCAC 58.244 50.000 0.00 0.00 0.00 3.06
2372 2461 2.371841 CGAGACCCCAATAATCCCATCA 59.628 50.000 0.00 0.00 0.00 3.07
2373 2462 2.637872 TCGAGACCCCAATAATCCCATC 59.362 50.000 0.00 0.00 0.00 3.51
2374 2463 2.701551 TCGAGACCCCAATAATCCCAT 58.298 47.619 0.00 0.00 0.00 4.00
2375 2464 2.184088 TCGAGACCCCAATAATCCCA 57.816 50.000 0.00 0.00 0.00 4.37
2376 2465 4.565028 GGTTATCGAGACCCCAATAATCCC 60.565 50.000 9.10 0.00 0.00 3.85
2377 2466 4.041198 TGGTTATCGAGACCCCAATAATCC 59.959 45.833 15.79 2.18 36.30 3.01
2378 2467 5.223449 TGGTTATCGAGACCCCAATAATC 57.777 43.478 15.79 0.00 36.30 1.75
2379 2468 4.041691 CCTGGTTATCGAGACCCCAATAAT 59.958 45.833 15.79 0.00 36.30 1.28
2380 2469 3.389983 CCTGGTTATCGAGACCCCAATAA 59.610 47.826 15.79 0.00 36.30 1.40
2381 2470 2.969950 CCTGGTTATCGAGACCCCAATA 59.030 50.000 15.79 0.00 36.30 1.90
2382 2471 1.768870 CCTGGTTATCGAGACCCCAAT 59.231 52.381 15.79 0.00 36.30 3.16
2383 2472 1.200519 CCTGGTTATCGAGACCCCAA 58.799 55.000 15.79 0.15 36.30 4.12
2384 2473 0.689745 CCCTGGTTATCGAGACCCCA 60.690 60.000 15.79 7.67 36.30 4.96
2385 2474 0.398098 TCCCTGGTTATCGAGACCCC 60.398 60.000 15.79 3.53 36.30 4.95
2386 2475 1.041437 CTCCCTGGTTATCGAGACCC 58.959 60.000 15.79 2.41 36.30 4.46
2387 2476 0.389757 GCTCCCTGGTTATCGAGACC 59.610 60.000 12.56 12.56 37.69 3.85
2388 2477 1.404843 AGCTCCCTGGTTATCGAGAC 58.595 55.000 0.00 0.00 0.00 3.36
2389 2478 3.308035 TTAGCTCCCTGGTTATCGAGA 57.692 47.619 0.00 0.00 0.00 4.04
2390 2479 3.132289 TGTTTAGCTCCCTGGTTATCGAG 59.868 47.826 0.00 0.00 0.00 4.04
2391 2480 3.101437 TGTTTAGCTCCCTGGTTATCGA 58.899 45.455 0.00 0.00 0.00 3.59
2392 2481 3.195661 GTGTTTAGCTCCCTGGTTATCG 58.804 50.000 0.00 0.00 0.00 2.92
2393 2482 3.195661 CGTGTTTAGCTCCCTGGTTATC 58.804 50.000 0.00 0.00 0.00 1.75
2394 2483 2.679930 GCGTGTTTAGCTCCCTGGTTAT 60.680 50.000 0.00 0.00 0.00 1.89
2395 2484 1.338389 GCGTGTTTAGCTCCCTGGTTA 60.338 52.381 0.00 0.00 0.00 2.85
2396 2485 0.605589 GCGTGTTTAGCTCCCTGGTT 60.606 55.000 0.00 0.00 0.00 3.67
2397 2486 1.003718 GCGTGTTTAGCTCCCTGGT 60.004 57.895 0.00 0.00 0.00 4.00
2398 2487 0.535335 TAGCGTGTTTAGCTCCCTGG 59.465 55.000 0.00 0.00 44.79 4.45
2399 2488 2.205074 CATAGCGTGTTTAGCTCCCTG 58.795 52.381 0.00 0.00 44.79 4.45
2400 2489 1.473434 GCATAGCGTGTTTAGCTCCCT 60.473 52.381 0.00 0.00 44.79 4.20
2401 2490 0.938008 GCATAGCGTGTTTAGCTCCC 59.062 55.000 0.00 0.00 44.79 4.30
2402 2491 0.938008 GGCATAGCGTGTTTAGCTCC 59.062 55.000 0.00 0.00 44.79 4.70
2403 2492 1.941325 AGGCATAGCGTGTTTAGCTC 58.059 50.000 0.00 0.00 44.79 4.09
2404 2493 2.803492 GCTAGGCATAGCGTGTTTAGCT 60.803 50.000 15.42 0.00 44.75 3.32
2405 2494 1.527311 GCTAGGCATAGCGTGTTTAGC 59.473 52.381 15.42 0.00 44.75 3.09
2415 2504 2.621055 ACAACTCGAGAGCTAGGCATAG 59.379 50.000 21.68 0.00 0.00 2.23
2416 2505 2.656002 ACAACTCGAGAGCTAGGCATA 58.344 47.619 21.68 0.00 0.00 3.14
2417 2506 1.479709 ACAACTCGAGAGCTAGGCAT 58.520 50.000 21.68 0.00 0.00 4.40
2418 2507 1.067565 CAACAACTCGAGAGCTAGGCA 60.068 52.381 21.68 0.00 0.00 4.75
2419 2508 1.067495 ACAACAACTCGAGAGCTAGGC 60.067 52.381 21.68 0.00 0.00 3.93
2420 2509 3.305398 AACAACAACTCGAGAGCTAGG 57.695 47.619 21.68 6.33 0.00 3.02
2421 2510 4.551388 AGAAACAACAACTCGAGAGCTAG 58.449 43.478 21.68 8.34 0.00 3.42
2422 2511 4.585955 AGAAACAACAACTCGAGAGCTA 57.414 40.909 21.68 0.00 0.00 3.32
2423 2512 3.460857 AGAAACAACAACTCGAGAGCT 57.539 42.857 21.68 0.00 0.00 4.09
2424 2513 3.309954 ACAAGAAACAACAACTCGAGAGC 59.690 43.478 21.68 0.00 0.00 4.09
2425 2514 4.025647 GGACAAGAAACAACAACTCGAGAG 60.026 45.833 21.68 13.59 0.00 3.20
2426 2515 3.869246 GGACAAGAAACAACAACTCGAGA 59.131 43.478 21.68 0.00 0.00 4.04
2427 2516 3.002348 GGGACAAGAAACAACAACTCGAG 59.998 47.826 11.84 11.84 0.00 4.04
2428 2517 2.940410 GGGACAAGAAACAACAACTCGA 59.060 45.455 0.00 0.00 0.00 4.04
2429 2518 2.943033 AGGGACAAGAAACAACAACTCG 59.057 45.455 0.00 0.00 0.00 4.18
2430 2519 3.945285 TCAGGGACAAGAAACAACAACTC 59.055 43.478 0.00 0.00 0.00 3.01
2431 2520 3.963129 TCAGGGACAAGAAACAACAACT 58.037 40.909 0.00 0.00 0.00 3.16
2432 2521 4.421058 GTTCAGGGACAAGAAACAACAAC 58.579 43.478 0.00 0.00 0.00 3.32
2433 2522 3.445805 GGTTCAGGGACAAGAAACAACAA 59.554 43.478 0.00 0.00 33.55 2.83
2434 2523 3.020984 GGTTCAGGGACAAGAAACAACA 58.979 45.455 0.00 0.00 33.55 3.33
2435 2524 2.032924 CGGTTCAGGGACAAGAAACAAC 59.967 50.000 0.00 0.00 33.04 3.32
2436 2525 2.294074 CGGTTCAGGGACAAGAAACAA 58.706 47.619 0.00 0.00 33.04 2.83
2437 2526 1.961793 CGGTTCAGGGACAAGAAACA 58.038 50.000 0.00 0.00 33.04 2.83
2438 2527 0.591659 GCGGTTCAGGGACAAGAAAC 59.408 55.000 0.00 0.00 0.00 2.78
2439 2528 0.536460 GGCGGTTCAGGGACAAGAAA 60.536 55.000 0.00 0.00 0.00 2.52
2440 2529 1.072505 GGCGGTTCAGGGACAAGAA 59.927 57.895 0.00 0.00 0.00 2.52
2441 2530 2.747686 GGCGGTTCAGGGACAAGA 59.252 61.111 0.00 0.00 0.00 3.02
2442 2531 2.742372 CGGCGGTTCAGGGACAAG 60.742 66.667 0.00 0.00 0.00 3.16
2443 2532 3.524648 GACGGCGGTTCAGGGACAA 62.525 63.158 13.24 0.00 0.00 3.18
2444 2533 3.998672 GACGGCGGTTCAGGGACA 61.999 66.667 13.24 0.00 0.00 4.02
2463 2552 2.229784 CCGTGTATATAAGGGGACGACC 59.770 54.545 0.00 0.00 39.11 4.79
2464 2553 2.229784 CCCGTGTATATAAGGGGACGAC 59.770 54.545 11.93 0.00 44.09 4.34
2465 2554 2.517959 CCCGTGTATATAAGGGGACGA 58.482 52.381 11.93 0.00 44.09 4.20
2471 2560 3.989817 GGCGTTAACCCGTGTATATAAGG 59.010 47.826 0.00 0.00 0.00 2.69
2472 2561 3.989817 GGGCGTTAACCCGTGTATATAAG 59.010 47.826 0.00 0.00 40.98 1.73
2473 2562 3.988819 GGGCGTTAACCCGTGTATATAA 58.011 45.455 0.00 0.00 40.98 0.98
2474 2563 3.658757 GGGCGTTAACCCGTGTATATA 57.341 47.619 0.00 0.00 40.98 0.86
2475 2564 2.531522 GGGCGTTAACCCGTGTATAT 57.468 50.000 0.00 0.00 40.98 0.86
2477 2566 4.939399 GGGCGTTAACCCGTGTAT 57.061 55.556 0.00 0.00 40.98 2.29
2492 2581 3.528370 CTCTGTAGACCGGCCGGG 61.528 72.222 44.99 27.55 43.62 5.73
2493 2582 2.754658 ACTCTGTAGACCGGCCGG 60.755 66.667 42.17 42.17 42.03 6.13
2494 2583 2.772691 GGACTCTGTAGACCGGCCG 61.773 68.421 21.04 21.04 0.00 6.13
2495 2584 2.424733 GGGACTCTGTAGACCGGCC 61.425 68.421 0.00 0.00 38.31 6.13
2496 2585 3.208335 GGGACTCTGTAGACCGGC 58.792 66.667 0.00 0.00 38.31 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.