AutoCloner

Multiple sequence alignment - TraesCS2B01G086400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G086400	chr2B	100.000	2514	0	0	1	2514	48181583	48179070	0.000000e+00	4643.0
1	TraesCS2B01G086400	chr2B	94.678	1973	100	5	1	1972	48216915	48214947	0.000000e+00	3057.0
2	TraesCS2B01G086400	chr2B	91.837	1911	152	4	53	1961	49284988	49286896	0.000000e+00	2662.0
3	TraesCS2B01G086400	chr2B	87.761	1724	158	21	502	2193	49115616	49117318	0.000000e+00	1965.0
4	TraesCS2B01G086400	chr2B	93.417	1276	78	3	1	1274	48305504	48304233	0.000000e+00	1886.0
5	TraesCS2B01G086400	chr2B	92.038	1256	98	1	1259	2512	48304214	48302959	0.000000e+00	1764.0
6	TraesCS2B01G086400	chr2B	91.542	1265	103	4	65	1327	48149051	48147789	0.000000e+00	1740.0
7	TraesCS2B01G086400	chr2B	88.993	536	36	6	1850	2365	49255450	49255982	2.110000e-180	641.0
8	TraesCS2B01G086400	chr2B	94.737	57	3	0	1	57	49284872	49284928	3.440000e-14	89.8
9	TraesCS2B01G086400	chr2A	90.691	2041	158	16	53	2064	32101715	32099678	0.000000e+00	2687.0
10	TraesCS2B01G086400	chr2A	90.560	1356	126	1	773	2128	32017860	32016507	0.000000e+00	1794.0
11	TraesCS2B01G086400	chr2A	92.332	639	46	2	53	689	32094336	32093699	0.000000e+00	905.0
12	TraesCS2B01G086400	chr2A	92.585	472	32	2	806	1276	32026994	32026525	0.000000e+00	675.0
13	TraesCS2B01G086400	chr2A	93.059	461	32	0	804	1264	32093674	32093214	0.000000e+00	675.0
14	TraesCS2B01G086400	chr2A	92.211	475	36	1	188	662	32027519	32027046	0.000000e+00	671.0
15	TraesCS2B01G086400	chr2D	90.653	1915	144	14	53	1963	29886031	29884148	0.000000e+00	2512.0
16	TraesCS2B01G086400	chr2D	87.255	1891	187	26	509	2365	30159238	30157368	0.000000e+00	2108.0
17	TraesCS2B01G086400	chr2D	87.233	1872	185	23	527	2365	30238813	30236963	0.000000e+00	2084.0
18	TraesCS2B01G086400	chr2D	86.832	1891	194	28	509	2365	30097587	30095718	0.000000e+00	2061.0
19	TraesCS2B01G086400	chr2D	86.772	1890	194	30	509	2365	30231221	30229355	0.000000e+00	2054.0
20	TraesCS2B01G086400	chr2D	90.299	536	30	5	1850	2365	30047855	30047322	0.000000e+00	682.0
21	TraesCS2B01G086400	chr2D	89.520	458	44	4	50	507	30098013	30097560	6.030000e-161	577.0
22	TraesCS2B01G086400	chr2D	91.667	240	18	2	2127	2365	29884121	29883883	5.180000e-87	331.0
23	TraesCS2B01G086400	chr2D	93.197	147	8	2	2365	2511	611746716	611746860	5.450000e-52	215.0
24	TraesCS2B01G086400	chr2D	92.593	54	4	0	3	56	29886149	29886096	7.460000e-11	78.7
25	TraesCS2B01G086400	chrUn	87.190	1897	189	28	503	2365	311531202	311533078	0.000000e+00	2108.0
26	TraesCS2B01G086400	chrUn	85.067	750	88	9	1637	2365	379450426	379449680	0.000000e+00	743.0
27	TraesCS2B01G086400	chr5A	93.919	148	9	0	2365	2512	624449450	624449597	9.050000e-55	224.0
28	TraesCS2B01G086400	chr5D	92.667	150	8	3	2360	2509	233184211	233184357	1.960000e-51	213.0
29	TraesCS2B01G086400	chr6A	92.617	149	8	3	2365	2512	360992877	360992731	7.050000e-51	211.0
30	TraesCS2B01G086400	chr1D	93.103	145	7	3	2365	2509	249409524	249409665	2.530000e-50	209.0
31	TraesCS2B01G086400	chr7D	92.000	150	9	3	2363	2512	552679745	552679599	9.110000e-50	207.0
32	TraesCS2B01G086400	chr4D	90.968	155	10	4	2359	2512	13945868	13946019	3.280000e-49	206.0
33	TraesCS2B01G086400	chr3B	91.447	152	9	4	2362	2512	454161886	454161738	3.280000e-49	206.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G086400	chr2B	48179070	48181583	2513	True	4643.0	4643	100.000000	1	2514	1	chr2B.!!$R2	2513
1	TraesCS2B01G086400	chr2B	48214947	48216915	1968	True	3057.0	3057	94.678000	1	1972	1	chr2B.!!$R3	1971
2	TraesCS2B01G086400	chr2B	49115616	49117318	1702	False	1965.0	1965	87.761000	502	2193	1	chr2B.!!$F1	1691
3	TraesCS2B01G086400	chr2B	48302959	48305504	2545	True	1825.0	1886	92.727500	1	2512	2	chr2B.!!$R4	2511
4	TraesCS2B01G086400	chr2B	48147789	48149051	1262	True	1740.0	1740	91.542000	65	1327	1	chr2B.!!$R1	1262
5	TraesCS2B01G086400	chr2B	49284872	49286896	2024	False	1375.9	2662	93.287000	1	1961	2	chr2B.!!$F3	1960
6	TraesCS2B01G086400	chr2B	49255450	49255982	532	False	641.0	641	88.993000	1850	2365	1	chr2B.!!$F2	515
7	TraesCS2B01G086400	chr2A	32099678	32101715	2037	True	2687.0	2687	90.691000	53	2064	1	chr2A.!!$R2	2011
8	TraesCS2B01G086400	chr2A	32016507	32017860	1353	True	1794.0	1794	90.560000	773	2128	1	chr2A.!!$R1	1355
9	TraesCS2B01G086400	chr2A	32093214	32094336	1122	True	790.0	905	92.695500	53	1264	2	chr2A.!!$R4	1211
10	TraesCS2B01G086400	chr2A	32026525	32027519	994	True	673.0	675	92.398000	188	1276	2	chr2A.!!$R3	1088
11	TraesCS2B01G086400	chr2D	30157368	30159238	1870	True	2108.0	2108	87.255000	509	2365	1	chr2D.!!$R2	1856
12	TraesCS2B01G086400	chr2D	30236963	30238813	1850	True	2084.0	2084	87.233000	527	2365	1	chr2D.!!$R4	1838
13	TraesCS2B01G086400	chr2D	30229355	30231221	1866	True	2054.0	2054	86.772000	509	2365	1	chr2D.!!$R3	1856
14	TraesCS2B01G086400	chr2D	30095718	30098013	2295	True	1319.0	2061	88.176000	50	2365	2	chr2D.!!$R6	2315
15	TraesCS2B01G086400	chr2D	29883883	29886149	2266	True	973.9	2512	91.637667	3	2365	3	chr2D.!!$R5	2362
16	TraesCS2B01G086400	chr2D	30047322	30047855	533	True	682.0	682	90.299000	1850	2365	1	chr2D.!!$R1	515
17	TraesCS2B01G086400	chrUn	311531202	311533078	1876	False	2108.0	2108	87.190000	503	2365	1	chrUn.!!$F1	1862
18	TraesCS2B01G086400	chrUn	379449680	379450426	746	True	743.0	743	85.067000	1637	2365	1	chrUn.!!$R1	728

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
323	392	0.774276	TCCATTGGCCACACTTACCA	59.226	50.0	3.88	0.0	0.0	3.25	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2230	2415	0.232303	GTTTGGCGTGTCGAACTCAG	59.768	55.0	0.0	0.0	0.0	3.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
248	317	8.802267	ACCAATATTGATTTCCCCATTTATACG	58.198	33.333	17.23	0.00	0.00	3.06
299	368	1.480954	GTCTGAAGGCGGTGGAGATAA	59.519	52.381	0.00	0.00	0.00	1.75
300	369	2.093658	GTCTGAAGGCGGTGGAGATAAA	60.094	50.000	0.00	0.00	0.00	1.40
323	392	0.774276	TCCATTGGCCACACTTACCA	59.226	50.000	3.88	0.00	0.00	3.25
346	415	7.451566	ACCATTTCCCATCTATAAATACCTTGC	59.548	37.037	0.00	0.00	0.00	4.01
467	536	9.487790	CAGGTACATGTTCCATTATTTGTTTTT	57.512	29.630	22.00	0.00	0.00	1.94
495	564	7.116075	TGCCTTGTTTTATCATTAGGCTTCTA	58.884	34.615	11.70	0.00	46.40	2.10
502	571	8.338986	GTTTTATCATTAGGCTTCTACTGCTTC	58.661	37.037	0.00	0.00	0.00	3.86
518	587	6.917217	ACTGCTTCTAGTTTTATCATCAGC	57.083	37.500	0.00	0.00	0.00	4.26
636	710	8.498358	TGATCTGTTAATCAATATTGTCATCGC	58.502	33.333	14.97	4.12	32.80	4.58
644	721	6.252967	TCAATATTGTCATCGCTGTTGTTT	57.747	33.333	14.97	0.00	0.00	2.83
697	777	5.827568	ATTGTTCGCATGTTCATTGTTTC	57.172	34.783	0.00	0.00	0.00	2.78
711	792	7.277539	TGTTCATTGTTTCTTTTCCATGTTGAC	59.722	33.333	0.00	0.00	0.00	3.18
793	875	2.933495	ACTTTGCATGCATAGCACAG	57.067	45.000	30.54	23.70	43.04	3.66
822	905	6.658831	TCGTTCTCTGTCATTGTTTCATTTC	58.341	36.000	0.00	0.00	0.00	2.17
928	1021	7.939782	TCTTTTCAAGAATAACAATGTGCTCA	58.060	30.769	0.00	0.00	33.83	4.26
951	1044	4.750098	ACAAGTACTAATATGGCATGCGTC	59.250	41.667	12.44	0.00	0.00	5.19
1084	1177	2.632996	TGTAGGTTGGTCCTCTCAACAG	59.367	50.000	8.82	0.00	44.42	3.16
1089	1182	3.394719	GTTGGTCCTCTCAACAGTTCTC	58.605	50.000	0.00	0.00	42.72	2.87
1101	1194	4.590647	TCAACAGTTCTCCTCAGACTTCAT	59.409	41.667	0.00	0.00	0.00	2.57
1108	1201	3.056250	TCTCCTCAGACTTCATTGTGAGC	60.056	47.826	0.00	0.00	35.99	4.26
1159	1252	2.562738	GTTGATTTGTTCCTTGAGGGGG	59.437	50.000	0.00	0.00	35.41	5.40
1344	1505	5.185454	ACAGGCAATTATGAAGATTCGTGA	58.815	37.500	0.00	0.00	0.00	4.35
1496	1657	3.008375	TCAGGAGGTCATCAACAAGAAGG	59.992	47.826	0.00	0.00	0.00	3.46
1503	1664	4.397417	GGTCATCAACAAGAAGGAGAATGG	59.603	45.833	0.00	0.00	0.00	3.16
1514	1675	2.769209	AGGAGAATGGCATGGTCTAGT	58.231	47.619	0.00	0.00	0.00	2.57
1543	1704	2.991250	TCTTGCTTAAGTGATGGAGCC	58.009	47.619	4.02	0.00	34.30	4.70
1755	1916	6.223852	TCTCACTAACTCAGGTTTCATGTTC	58.776	40.000	0.00	0.00	36.92	3.18
1784	1946	6.434340	GTCATGTACCCTTTTGAGAGGAATTT	59.566	38.462	0.00	0.00	39.25	1.82
1843	2006	7.019418	GGTTTCGATTACCAGTTAATTGTCAC	58.981	38.462	11.28	0.00	34.27	3.67
1847	2010	7.604549	TCGATTACCAGTTAATTGTCACTGTA	58.395	34.615	11.29	4.32	39.09	2.74
1848	2011	8.255206	TCGATTACCAGTTAATTGTCACTGTAT	58.745	33.333	11.29	4.57	39.09	2.29
1853	2016	8.319143	ACCAGTTAATTGTCACTGTATTGTAC	57.681	34.615	11.29	0.00	39.09	2.90
1855	2018	7.606456	CCAGTTAATTGTCACTGTATTGTACCT	59.394	37.037	11.29	0.00	39.09	3.08
1930	2093	3.136626	GGCAAACACCCCTATATCTCTGT	59.863	47.826	0.00	0.00	0.00	3.41
1979	2142	0.178998	ATGCACCCATCCATCTGCTC	60.179	55.000	0.00	0.00	0.00	4.26
1994	2157	2.102420	TCTGCTCGAGAAAGGTTTCACA	59.898	45.455	18.75	0.00	39.61	3.58
2084	2247	0.802494	CCACATTTCTTTCCCGACCG	59.198	55.000	0.00	0.00	0.00	4.79
2157	2340	7.382488	CCTGGTGTCGATGAGTTATACATTTAG	59.618	40.741	0.00	0.00	0.00	1.85
2230	2415	5.112686	GTGTCATCTCCTACTTCCAATGAC	58.887	45.833	6.39	6.39	41.97	3.06
2235	2420	4.678256	TCTCCTACTTCCAATGACTGAGT	58.322	43.478	0.00	0.00	0.00	3.41
2247	2432	0.596600	GACTGAGTTCGACACGCCAA	60.597	55.000	0.00	0.00	0.00	4.52
2259	2444	1.686052	ACACGCCAAACATCCAATTGT	59.314	42.857	4.43	0.00	0.00	2.71
2267	2452	4.358851	CAAACATCCAATTGTGTTCACGT	58.641	39.130	13.12	0.00	37.56	4.49
2287	2472	0.759346	AGAAGAAAGAGGGCACGTGT	59.241	50.000	18.38	0.00	0.00	4.49
2399	2584	1.535462	CAGAGCAACCGGTTTACCTTG	59.465	52.381	19.55	7.29	0.00	3.61
2408	2593	1.204467	CGGTTTACCTTGCATTGCCAT	59.796	47.619	6.12	0.00	0.00	4.40
2414	2599	0.685131	CCTTGCATTGCCATCCCAGA	60.685	55.000	6.12	0.00	0.00	3.86
2419	2604	1.478105	GCATTGCCATCCCAGAGATCA	60.478	52.381	0.00	0.00	30.59	2.92
2440	2625	2.017049	AGTCTTCTGGCAACACACAAC	58.983	47.619	0.00	0.00	46.17	3.32
2442	2627	2.358898	GTCTTCTGGCAACACACAACAT	59.641	45.455	0.00	0.00	46.17	2.71
2450	2635	3.550030	GGCAACACACAACATCTTGGTAC	60.550	47.826	0.00	0.00	0.00	3.34
2463	2648	4.164843	TCTTGGTACAGAAAAGCAACCT	57.835	40.909	0.00	0.00	42.39	3.50
2488	2673	9.249457	CTCTTTATTGACATAAGCGAGAACATA	57.751	33.333	0.00	0.00	31.81	2.29
2489	2674	9.594478	TCTTTATTGACATAAGCGAGAACATAA	57.406	29.630	0.00	0.00	0.00	1.90
2512	2697	9.811995	ATAAGTTCGATATTACAACAAGTAGCA	57.188	29.630	0.00	0.00	33.43	3.49
2513	2698	7.757097	AGTTCGATATTACAACAAGTAGCAG	57.243	36.000	0.00	0.00	33.43	4.24

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
9	10	4.719773	ACATATACCTACCACTGGAAGCAA	59.280	41.667	0.71	0.00	37.60	3.91
173	242	8.506083	AGTCATGTCCCCAAATAAATATTCTCT	58.494	33.333	0.00	0.00	0.00	3.10
186	255	6.726379	TGTTATTAATGAGTCATGTCCCCAA	58.274	36.000	6.34	0.00	0.00	4.12
248	317	1.586154	CCACACGGATCTTTGCCCAC	61.586	60.000	0.00	0.00	0.00	4.61
299	368	2.014010	AGTGTGGCCAATGGACAATT	57.986	45.000	10.58	0.00	45.35	2.32
300	369	2.014010	AAGTGTGGCCAATGGACAAT	57.986	45.000	10.58	0.00	45.35	2.71
323	392	7.534852	TGGCAAGGTATTTATAGATGGGAAAT	58.465	34.615	0.00	0.00	0.00	2.17
346	415	0.392706	TGCTGGTATGCCTCGTATGG	59.607	55.000	0.16	0.00	35.27	2.74
467	536	4.644685	GCCTAATGATAAAACAAGGCAGGA	59.355	41.667	6.30	0.00	46.95	3.86
495	564	5.819901	GGCTGATGATAAAACTAGAAGCAGT	59.180	40.000	0.00	0.00	0.00	4.40
502	571	6.259608	CACCAGAAGGCTGATGATAAAACTAG	59.740	42.308	0.00	0.00	45.17	2.57
518	587	2.814336	GGACACTAAAAGCACCAGAAGG	59.186	50.000	0.00	0.00	42.21	3.46
628	699	3.313803	TGCTAAAAACAACAGCGATGACA	59.686	39.130	8.12	0.00	38.15	3.58
629	700	3.664025	GTGCTAAAAACAACAGCGATGAC	59.336	43.478	8.12	0.00	38.15	3.06
636	710	4.853924	AGATGGGTGCTAAAAACAACAG	57.146	40.909	0.00	0.00	0.00	3.16
681	761	4.744137	TGGAAAAGAAACAATGAACATGCG	59.256	37.500	0.00	0.00	0.00	4.73
697	777	7.559590	CCTAGATAAGGTCAACATGGAAAAG	57.440	40.000	0.00	0.00	40.94	2.27
793	875	3.502920	ACAATGACAGAGAACGATCGAC	58.497	45.455	24.34	14.96	0.00	4.20
928	1021	4.703897	ACGCATGCCATATTAGTACTTGT	58.296	39.130	13.15	0.00	0.00	3.16
985	1078	4.521146	AGCTCCATGATCACCTAAACAAG	58.479	43.478	0.00	0.00	0.00	3.16
1028	1121	5.955959	TCCTCTACAAGTAGTGCCTTGATAA	59.044	40.000	7.84	0.00	43.65	1.75
1084	1177	4.887748	TCACAATGAAGTCTGAGGAGAAC	58.112	43.478	0.00	0.00	0.00	3.01
1089	1182	3.331478	AGCTCACAATGAAGTCTGAGG	57.669	47.619	0.00	0.00	32.32	3.86
1101	1194	3.769300	TCATGGCTAGAGTAAGCTCACAA	59.231	43.478	0.00	0.00	44.00	3.33
1108	1201	4.963318	TCCCATTCATGGCTAGAGTAAG	57.037	45.455	0.00	0.00	46.70	2.34
1159	1252	9.824534	ATCAAACAAAACAATGTCAAACTTTTC	57.175	25.926	0.00	0.00	31.81	2.29
1331	1492	3.909995	TCCCCCATATCACGAATCTTCAT	59.090	43.478	0.00	0.00	0.00	2.57
1344	1505	4.478317	TCTTCACATCAGTTTCCCCCATAT	59.522	41.667	0.00	0.00	0.00	1.78
1496	1657	2.216898	GCACTAGACCATGCCATTCTC	58.783	52.381	0.00	0.00	35.73	2.87
1503	1664	3.881688	AGATGAATTGCACTAGACCATGC	59.118	43.478	0.00	0.00	42.40	4.06
1568	1729	5.938125	ACAACGGAGACTAAAGCAAACATAT	59.062	36.000	0.00	0.00	0.00	1.78
1639	1800	6.906157	AGGGATAATTATGTCTTGCCATTG	57.094	37.500	1.78	0.00	0.00	2.82
1755	1916	5.152623	TCTCAAAAGGGTACATGACTCAG	57.847	43.478	0.00	0.00	0.00	3.35
1821	1984	6.932400	ACAGTGACAATTAACTGGTAATCGAA	59.068	34.615	15.59	0.00	46.55	3.71
1823	1986	6.721571	ACAGTGACAATTAACTGGTAATCG	57.278	37.500	15.59	0.00	46.55	3.34
1843	2006	9.424319	AGCGATCATTAATTAGGTACAATACAG	57.576	33.333	0.00	0.00	0.00	2.74
1865	2028	9.330063	GGATCAATGATGGATTAATAATAGCGA	57.670	33.333	0.00	0.00	0.00	4.93
1994	2157	3.009033	TGCAACCCTTAGATGCACTAGTT	59.991	43.478	0.00	0.00	44.52	2.24
2011	2174	2.463876	GTCTTTGAACCTTGCTGCAAC	58.536	47.619	11.69	2.22	0.00	4.17
2084	2247	2.161211	GCTGATGTTGCAAGAGGAGAAC	59.839	50.000	0.00	0.00	0.00	3.01
2124	2288	3.625632	ATCGACACCAGGGAGGCCT	62.626	63.158	3.86	3.86	43.14	5.19
2178	2361	6.879458	GCTCCTCTATACTTCCTTCAAAAACA	59.121	38.462	0.00	0.00	0.00	2.83
2230	2415	0.232303	GTTTGGCGTGTCGAACTCAG	59.768	55.000	0.00	0.00	0.00	3.35
2235	2420	0.533085	TGGATGTTTGGCGTGTCGAA	60.533	50.000	0.00	0.00	0.00	3.71
2247	2432	5.060506	TCTACGTGAACACAATTGGATGTT	58.939	37.500	12.75	12.75	41.70	2.71
2259	2444	3.554337	GCCCTCTTTCTTCTACGTGAACA	60.554	47.826	0.00	0.00	0.00	3.18
2267	2452	1.968493	ACACGTGCCCTCTTTCTTCTA	59.032	47.619	17.22	0.00	0.00	2.10
2287	2472	4.635324	TGATCAATTCGTTTATGCAGCTCA	59.365	37.500	0.00	0.00	0.00	4.26
2376	2561	0.796927	GTAAACCGGTTGCTCTGAGC	59.203	55.000	23.08	22.38	42.82	4.26
2390	2575	2.418609	GGGATGGCAATGCAAGGTAAAC	60.419	50.000	7.79	0.00	0.00	2.01
2399	2584	1.245732	GATCTCTGGGATGGCAATGC	58.754	55.000	0.00	0.00	34.33	3.56
2408	2593	3.102972	CCAGAAGACTTGATCTCTGGGA	58.897	50.000	15.46	0.00	42.84	4.37
2414	2599	3.181451	TGTGTTGCCAGAAGACTTGATCT	60.181	43.478	0.00	0.00	40.46	2.75
2419	2604	2.418368	TGTGTGTTGCCAGAAGACTT	57.582	45.000	0.00	0.00	0.00	3.01
2440	2625	4.520492	AGGTTGCTTTTCTGTACCAAGATG	59.480	41.667	0.00	0.00	0.00	2.90
2442	2627	4.134563	GAGGTTGCTTTTCTGTACCAAGA	58.865	43.478	0.00	0.00	0.00	3.02
2450	2635	6.738114	TGTCAATAAAGAGGTTGCTTTTCTG	58.262	36.000	0.00	0.00	38.85	3.02
2463	2648	9.594478	TTATGTTCTCGCTTATGTCAATAAAGA	57.406	29.630	0.00	0.00	0.00	2.52
2488	2673	8.186178	CTGCTACTTGTTGTAATATCGAACTT	57.814	34.615	0.00	0.00	0.00	2.66
2489	2674	7.757097	CTGCTACTTGTTGTAATATCGAACT	57.243	36.000	0.00	0.00	0.00	3.01

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.