Multiple sequence alignment - TraesCS2B01G085400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G085400 chr2B 100.000 6745 0 0 1 6745 47635102 47641846 0.000000e+00 12456.0
1 TraesCS2B01G085400 chr2B 93.550 1845 86 11 2389 4231 47534964 47536777 0.000000e+00 2717.0
2 TraesCS2B01G085400 chr2B 92.944 1488 81 17 420 1898 47532451 47533923 0.000000e+00 2145.0
3 TraesCS2B01G085400 chr2B 95.156 1342 45 7 4981 6310 47539875 47541208 0.000000e+00 2100.0
4 TraesCS2B01G085400 chr2B 93.954 827 46 4 4160 4985 47539002 47539825 0.000000e+00 1247.0
5 TraesCS2B01G085400 chr2B 90.488 410 31 3 6344 6745 47541208 47541617 9.960000e-148 534.0
6 TraesCS2B01G085400 chr2B 98.673 226 3 0 3 228 47532235 47532460 1.050000e-107 401.0
7 TraesCS2B01G085400 chr2B 82.589 448 32 24 1949 2385 47534316 47534728 2.990000e-93 353.0
8 TraesCS2B01G085400 chr2B 90.991 111 5 4 2656 2764 798196655 798196762 1.960000e-30 145.0
9 TraesCS2B01G085400 chr2B 94.624 93 4 1 2678 2769 620595342 620595250 7.050000e-30 143.0
10 TraesCS2B01G085400 chr2B 95.455 88 4 0 2679 2766 488199350 488199263 2.540000e-29 141.0
11 TraesCS2B01G085400 chr2B 100.000 32 0 0 390 421 795056435 795056466 7.310000e-05 60.2
12 TraesCS2B01G085400 chr2B 94.737 38 1 1 390 427 786915198 786915234 2.630000e-04 58.4
13 TraesCS2B01G085400 chr2B 94.737 38 1 1 390 427 786958307 786958343 2.630000e-04 58.4
14 TraesCS2B01G085400 chr2A 88.535 2259 183 22 2762 4985 31829974 31832191 0.000000e+00 2667.0
15 TraesCS2B01G085400 chr2A 93.240 1790 95 11 4981 6745 31832241 31834029 0.000000e+00 2612.0
16 TraesCS2B01G085400 chr2A 91.810 696 34 10 887 1569 31818938 31819623 0.000000e+00 948.0
17 TraesCS2B01G085400 chr2A 84.615 598 70 16 1308 1898 31820069 31820651 5.870000e-160 575.0
18 TraesCS2B01G085400 chr2A 89.976 409 31 6 1647 2045 31819621 31820029 2.790000e-143 520.0
19 TraesCS2B01G085400 chr2A 88.776 294 13 10 2389 2681 31823854 31824128 6.480000e-90 342.0
20 TraesCS2B01G085400 chr2A 94.196 224 9 2 5 228 552531752 552531533 8.380000e-89 339.0
21 TraesCS2B01G085400 chr2A 91.964 224 14 2 8 231 552530126 552529907 1.830000e-80 311.0
22 TraesCS2B01G085400 chr2A 88.889 243 19 2 1949 2184 31823291 31823532 6.620000e-75 292.0
23 TraesCS2B01G085400 chr2A 85.614 285 26 4 420 704 552531542 552531273 1.110000e-72 285.0
24 TraesCS2B01G085400 chr2A 90.116 172 17 0 536 707 552528088 552527917 2.450000e-54 224.0
25 TraesCS2B01G085400 chr2A 90.566 106 9 1 2201 2305 101846918 101847023 9.120000e-29 139.0
26 TraesCS2B01G085400 chr2A 91.667 84 7 0 2304 2387 31823545 31823628 4.270000e-22 117.0
27 TraesCS2B01G085400 chr2A 89.041 73 5 1 418 490 552529705 552529636 3.350000e-13 87.9
28 TraesCS2B01G085400 chr2D 91.667 1800 88 28 4981 6745 29529222 29530994 0.000000e+00 2436.0
29 TraesCS2B01G085400 chr2D 88.219 1409 114 22 733 2130 29526435 29527802 0.000000e+00 1635.0
30 TraesCS2B01G085400 chr2D 89.450 436 23 5 2762 3182 29528462 29528889 4.630000e-146 529.0
31 TraesCS2B01G085400 chr2D 94.595 259 10 1 4727 4985 29528918 29529172 1.360000e-106 398.0
32 TraesCS2B01G085400 chr2D 91.156 294 13 7 2389 2682 29528185 29528465 2.950000e-103 387.0
33 TraesCS2B01G085400 chr2D 85.942 377 20 14 956 1326 29523667 29524016 8.260000e-99 372.0
34 TraesCS2B01G085400 chr2D 97.619 84 2 0 2304 2387 29527876 29527959 1.960000e-30 145.0
35 TraesCS2B01G085400 chr2D 91.429 105 9 0 2205 2309 382198150 382198254 1.960000e-30 145.0
36 TraesCS2B01G085400 chr2D 97.500 40 1 0 2879 2918 57167199 57167160 1.210000e-07 69.4
37 TraesCS2B01G085400 chr6A 81.703 634 83 8 3541 4171 12075024 12074421 1.310000e-136 497.0
38 TraesCS2B01G085400 chr6A 84.259 324 36 9 3184 3503 12075338 12075026 1.100000e-77 302.0
39 TraesCS2B01G085400 chr6A 84.800 250 33 4 4243 4491 12060809 12060564 5.220000e-61 246.0
40 TraesCS2B01G085400 chr4D 96.516 287 10 0 420 706 90979108 90978822 6.120000e-130 475.0
41 TraesCS2B01G085400 chr4D 96.429 224 8 0 5 228 90979322 90979099 2.970000e-98 370.0
42 TraesCS2B01G085400 chr4D 93.069 101 7 0 2208 2308 323929670 323929570 1.520000e-31 148.0
43 TraesCS2B01G085400 chr5B 91.667 288 24 0 420 707 214018488 214018201 3.790000e-107 399.0
44 TraesCS2B01G085400 chr5B 95.536 224 10 0 5 228 214018702 214018479 6.430000e-95 359.0
45 TraesCS2B01G085400 chr5B 88.333 240 20 4 1986 2218 257333449 257333687 1.430000e-71 281.0
46 TraesCS2B01G085400 chr5B 86.260 262 27 3 1986 2239 257529537 257529797 6.660000e-70 276.0
47 TraesCS2B01G085400 chr5B 91.146 192 11 2 2468 2659 257334295 257334480 8.680000e-64 255.0
48 TraesCS2B01G085400 chr5B 87.565 193 10 4 2468 2660 257530384 257530562 1.910000e-50 211.0
49 TraesCS2B01G085400 chr5B 94.059 101 6 0 2285 2385 257333783 257333883 3.260000e-33 154.0
50 TraesCS2B01G085400 chr5B 94.059 101 6 0 2285 2385 257529872 257529972 3.260000e-33 154.0
51 TraesCS2B01G085400 chr5B 89.524 105 11 0 2201 2305 474772783 474772887 4.240000e-27 134.0
52 TraesCS2B01G085400 chr5B 93.976 83 4 1 2389 2470 257334114 257334196 2.550000e-24 124.0
53 TraesCS2B01G085400 chr5B 92.771 83 5 1 2389 2470 257530203 257530285 1.190000e-22 119.0
54 TraesCS2B01G085400 chr5B 90.698 43 4 0 390 432 65244995 65244953 2.630000e-04 58.4
55 TraesCS2B01G085400 chr6B 85.987 314 36 7 3196 3503 19237623 19237312 5.040000e-86 329.0
56 TraesCS2B01G085400 chr6B 96.774 93 2 1 2674 2766 6785933 6786024 3.260000e-33 154.0
57 TraesCS2B01G085400 chr6B 76.129 310 44 12 3541 3837 19237310 19237018 1.180000e-27 135.0
58 TraesCS2B01G085400 chr6B 84.545 110 17 0 4385 4494 40779545 40779654 7.150000e-20 110.0
59 TraesCS2B01G085400 chr6B 100.000 32 0 0 390 421 664071216 664071185 7.310000e-05 60.2
60 TraesCS2B01G085400 chr6B 92.683 41 1 2 390 428 584659921 584659881 2.630000e-04 58.4
61 TraesCS2B01G085400 chr1B 88.889 270 11 9 437 706 136146044 136145794 1.410000e-81 315.0
62 TraesCS2B01G085400 chr1B 89.941 169 8 5 228 395 53647712 53647552 6.850000e-50 209.0
63 TraesCS2B01G085400 chr1B 91.919 99 8 0 2208 2306 359902145 359902047 9.120000e-29 139.0
64 TraesCS2B01G085400 chr1B 90.722 97 9 0 2923 3019 20587020 20587116 5.490000e-26 130.0
65 TraesCS2B01G085400 chr1B 88.060 67 7 1 2853 2918 431448369 431448303 2.020000e-10 78.7
66 TraesCS2B01G085400 chr7D 91.176 170 10 4 228 395 37852945 37852779 6.810000e-55 226.0
67 TraesCS2B01G085400 chr5A 90.533 169 8 4 228 395 2396331 2396492 4.100000e-52 217.0
68 TraesCS2B01G085400 chr3A 90.909 165 7 4 228 392 739754361 739754517 1.470000e-51 215.0
69 TraesCS2B01G085400 chr3A 92.079 101 7 1 2205 2305 269394312 269394411 2.540000e-29 141.0
70 TraesCS2B01G085400 chr3A 95.082 61 3 0 2858 2918 518646296 518646236 5.570000e-16 97.1
71 TraesCS2B01G085400 chr7B 89.941 169 8 5 228 395 724790866 724790706 6.850000e-50 209.0
72 TraesCS2B01G085400 chr7B 87.662 154 10 3 221 374 122787580 122787724 3.230000e-38 171.0
73 TraesCS2B01G085400 chr7B 83.616 177 27 2 3184 3359 525254973 525254798 1.500000e-36 165.0
74 TraesCS2B01G085400 chr7B 95.506 89 4 0 2679 2767 292839278 292839366 7.050000e-30 143.0
75 TraesCS2B01G085400 chr7B 82.581 155 22 3 53 206 270536107 270536257 1.530000e-26 132.0
76 TraesCS2B01G085400 chr7B 81.935 155 23 3 53 206 270529838 270529988 7.100000e-25 126.0
77 TraesCS2B01G085400 chr7B 81.935 155 23 3 53 206 270537729 270537879 7.100000e-25 126.0
78 TraesCS2B01G085400 chr6D 88.439 173 14 5 224 395 27818708 27818875 3.190000e-48 204.0
79 TraesCS2B01G085400 chr6D 92.857 98 7 0 2208 2305 91559631 91559534 7.050000e-30 143.0
80 TraesCS2B01G085400 chr6D 91.837 98 8 0 2208 2305 251235130 251235033 3.280000e-28 137.0
81 TraesCS2B01G085400 chr1D 89.349 169 9 6 228 395 64209984 64209824 3.190000e-48 204.0
82 TraesCS2B01G085400 chr1D 92.000 100 6 2 2208 2306 37458328 37458230 9.120000e-29 139.0
83 TraesCS2B01G085400 chr1D 97.500 40 1 0 2879 2918 291537124 291537085 1.210000e-07 69.4
84 TraesCS2B01G085400 chr1D 97.500 40 1 0 2879 2918 390665276 390665237 1.210000e-07 69.4
85 TraesCS2B01G085400 chr4B 87.166 187 13 7 229 412 10948345 10948167 1.150000e-47 202.0
86 TraesCS2B01G085400 chr4B 96.512 86 3 0 2679 2764 597668156 597668071 7.050000e-30 143.0
87 TraesCS2B01G085400 chr4B 97.297 37 1 0 390 426 637594142 637594106 5.650000e-06 63.9
88 TraesCS2B01G085400 chr1A 88.136 177 10 5 220 395 474438919 474438753 4.130000e-47 200.0
89 TraesCS2B01G085400 chrUn 88.462 156 7 4 228 382 17018904 17018759 1.930000e-40 178.0
90 TraesCS2B01G085400 chr3B 84.181 177 26 2 3184 3359 77643238 77643063 3.230000e-38 171.0
91 TraesCS2B01G085400 chr3B 97.647 85 2 0 2679 2763 719826059 719826143 5.450000e-31 147.0
92 TraesCS2B01G085400 chr3B 95.455 88 4 0 2676 2763 804117482 804117569 2.540000e-29 141.0
93 TraesCS2B01G085400 chr3B 84.694 98 15 0 3209 3306 30445485 30445388 1.550000e-16 99.0
94 TraesCS2B01G085400 chr3B 88.235 68 7 1 2852 2918 797128512 797128445 5.610000e-11 80.5
95 TraesCS2B01G085400 chr7A 82.581 155 22 3 53 206 42915646 42915496 1.530000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G085400 chr2B 47635102 47641846 6744 False 12456.000000 12456 100.000000 1 6745 1 chr2B.!!$F1 6744
1 TraesCS2B01G085400 chr2B 47532235 47541617 9382 False 1356.714286 2717 92.479143 3 6745 7 chr2B.!!$F6 6742
2 TraesCS2B01G085400 chr2A 31829974 31834029 4055 False 2639.500000 2667 90.887500 2762 6745 2 chr2A.!!$F3 3983
3 TraesCS2B01G085400 chr2A 31818938 31824128 5190 False 465.666667 948 89.288833 887 2681 6 chr2A.!!$F2 1794
4 TraesCS2B01G085400 chr2A 552527917 552531752 3835 True 249.380000 339 90.186200 5 707 5 chr2A.!!$R1 702
5 TraesCS2B01G085400 chr2D 29523667 29530994 7327 False 843.142857 2436 91.235429 733 6745 7 chr2D.!!$F2 6012
6 TraesCS2B01G085400 chr6A 12074421 12075338 917 True 399.500000 497 82.981000 3184 4171 2 chr6A.!!$R2 987
7 TraesCS2B01G085400 chr4D 90978822 90979322 500 True 422.500000 475 96.472500 5 706 2 chr4D.!!$R2 701
8 TraesCS2B01G085400 chr5B 214018201 214018702 501 True 379.000000 399 93.601500 5 707 2 chr5B.!!$R2 702
9 TraesCS2B01G085400 chr5B 257333449 257334480 1031 False 203.500000 281 91.878500 1986 2659 4 chr5B.!!$F2 673
10 TraesCS2B01G085400 chr6B 19237018 19237623 605 True 232.000000 329 81.058000 3196 3837 2 chr6B.!!$R3 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
235 236 0.034059 CTCCCTTTCATCGGATCCGG 59.966 60.000 32.79 18.56 40.25 5.14 F
426 427 0.034896 GCAAGTCTCGTCCCCTTTCA 59.965 55.000 0.00 0.00 0.00 2.69 F
2130 8807 0.332972 GGAGGGAATTGGCCTGTTCT 59.667 55.000 16.69 2.91 0.00 3.01 F
3428 11351 0.797579 TCCCTCCCTGAAACTACCCT 59.202 55.000 0.00 0.00 0.00 4.34 F
3838 11779 1.852067 GCATGCGTTCTTCAACCGGT 61.852 55.000 0.00 0.00 0.00 5.28 F
4521 14795 1.303398 AGAGAGACAGAACGCCCGA 60.303 57.895 0.00 0.00 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2055 8732 0.821711 TTTTCTGGGTTGCTCCACCG 60.822 55.000 1.43 0.0 37.76 4.94 R
2156 8848 1.002033 CAAAGAGCACAAGACACCAGC 60.002 52.381 0.00 0.0 0.00 4.85 R
3455 11378 0.163146 GGTTACAAAGCTCGCACGAC 59.837 55.000 0.00 0.0 0.00 4.34 R
4521 14795 0.981183 TTGTTCCCCTGCTATCACGT 59.019 50.000 0.00 0.0 0.00 4.49 R
5640 15968 1.071434 TCACCCATGACCACATCCAA 58.929 50.000 0.00 0.0 34.15 3.53 R
6353 16697 0.613012 AGGCAGGGCAAATCAAGACC 60.613 55.000 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 3.518634 AGTGTTGCCACGTTGAAAAAT 57.481 38.095 0.00 0.00 46.56 1.82
228 229 2.802667 CGCGTGCTCCCTTTCATCG 61.803 63.158 0.00 0.00 0.00 3.84
229 230 2.464459 GCGTGCTCCCTTTCATCGG 61.464 63.158 0.00 0.00 0.00 4.18
230 231 1.218047 CGTGCTCCCTTTCATCGGA 59.782 57.895 0.00 0.00 0.00 4.55
231 232 0.179073 CGTGCTCCCTTTCATCGGAT 60.179 55.000 0.00 0.00 0.00 4.18
233 234 0.469917 TGCTCCCTTTCATCGGATCC 59.530 55.000 0.00 0.00 0.00 3.36
235 236 0.034059 CTCCCTTTCATCGGATCCGG 59.966 60.000 32.79 18.56 40.25 5.14
236 237 1.598130 CCCTTTCATCGGATCCGGC 60.598 63.158 32.79 0.00 40.25 6.13
237 238 1.447643 CCTTTCATCGGATCCGGCT 59.552 57.895 32.79 18.38 40.25 5.52
238 239 0.179045 CCTTTCATCGGATCCGGCTT 60.179 55.000 32.79 15.98 40.25 4.35
239 240 0.940126 CTTTCATCGGATCCGGCTTG 59.060 55.000 32.79 25.35 40.25 4.01
241 242 2.940890 TTCATCGGATCCGGCTTGCC 62.941 60.000 32.79 0.75 40.25 4.52
242 243 3.164269 ATCGGATCCGGCTTGCCT 61.164 61.111 32.79 7.37 40.25 4.75
245 246 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
246 247 2.439156 GATCCGGCTTGCCTGCTT 60.439 61.111 10.12 0.00 0.00 3.91
247 248 2.439156 ATCCGGCTTGCCTGCTTC 60.439 61.111 10.12 0.00 0.00 3.86
248 249 4.722700 TCCGGCTTGCCTGCTTCC 62.723 66.667 10.12 0.00 0.00 3.46
249 250 4.729918 CCGGCTTGCCTGCTTCCT 62.730 66.667 10.12 0.00 0.00 3.36
250 251 2.674380 CGGCTTGCCTGCTTCCTT 60.674 61.111 10.12 0.00 0.00 3.36
251 252 2.270986 CGGCTTGCCTGCTTCCTTT 61.271 57.895 10.12 0.00 0.00 3.11
252 253 1.588597 GGCTTGCCTGCTTCCTTTC 59.411 57.895 4.11 0.00 0.00 2.62
253 254 1.588597 GCTTGCCTGCTTCCTTTCC 59.411 57.895 0.00 0.00 0.00 3.13
254 255 1.181098 GCTTGCCTGCTTCCTTTCCA 61.181 55.000 0.00 0.00 0.00 3.53
255 256 1.553706 CTTGCCTGCTTCCTTTCCAT 58.446 50.000 0.00 0.00 0.00 3.41
256 257 1.203994 CTTGCCTGCTTCCTTTCCATG 59.796 52.381 0.00 0.00 0.00 3.66
258 259 0.969409 GCCTGCTTCCTTTCCATGCT 60.969 55.000 0.00 0.00 0.00 3.79
261 262 2.015587 CTGCTTCCTTTCCATGCTCTC 58.984 52.381 0.00 0.00 0.00 3.20
262 263 1.352017 TGCTTCCTTTCCATGCTCTCA 59.648 47.619 0.00 0.00 0.00 3.27
263 264 2.025605 TGCTTCCTTTCCATGCTCTCAT 60.026 45.455 0.00 0.00 0.00 2.90
264 265 2.617774 GCTTCCTTTCCATGCTCTCATC 59.382 50.000 0.00 0.00 0.00 2.92
266 267 1.139654 TCCTTTCCATGCTCTCATCCG 59.860 52.381 0.00 0.00 0.00 4.18
267 268 1.134280 CCTTTCCATGCTCTCATCCGT 60.134 52.381 0.00 0.00 0.00 4.69
268 269 1.938577 CTTTCCATGCTCTCATCCGTG 59.061 52.381 0.00 0.00 0.00 4.94
269 270 0.462581 TTCCATGCTCTCATCCGTGC 60.463 55.000 0.00 0.00 0.00 5.34
270 271 1.145598 CCATGCTCTCATCCGTGCT 59.854 57.895 0.00 0.00 0.00 4.40
271 272 0.463295 CCATGCTCTCATCCGTGCTT 60.463 55.000 0.00 0.00 0.00 3.91
272 273 0.935898 CATGCTCTCATCCGTGCTTC 59.064 55.000 0.00 0.00 0.00 3.86
273 274 0.179062 ATGCTCTCATCCGTGCTTCC 60.179 55.000 0.00 0.00 0.00 3.46
274 275 1.219124 GCTCTCATCCGTGCTTCCA 59.781 57.895 0.00 0.00 0.00 3.53
279 280 0.684535 TCATCCGTGCTTCCACTTCA 59.315 50.000 0.00 0.00 39.86 3.02
280 281 1.278985 TCATCCGTGCTTCCACTTCAT 59.721 47.619 0.00 0.00 39.86 2.57
281 282 1.667724 CATCCGTGCTTCCACTTCATC 59.332 52.381 0.00 0.00 39.86 2.92
282 283 0.036388 TCCGTGCTTCCACTTCATCC 60.036 55.000 0.00 0.00 39.86 3.51
283 284 0.036010 CCGTGCTTCCACTTCATCCT 60.036 55.000 0.00 0.00 39.86 3.24
284 285 1.207089 CCGTGCTTCCACTTCATCCTA 59.793 52.381 0.00 0.00 39.86 2.94
285 286 2.271800 CGTGCTTCCACTTCATCCTAC 58.728 52.381 0.00 0.00 39.86 3.18
286 287 2.271800 GTGCTTCCACTTCATCCTACG 58.728 52.381 0.00 0.00 38.93 3.51
287 288 1.207089 TGCTTCCACTTCATCCTACGG 59.793 52.381 0.00 0.00 0.00 4.02
288 289 1.941325 CTTCCACTTCATCCTACGGC 58.059 55.000 0.00 0.00 0.00 5.68
289 290 1.482593 CTTCCACTTCATCCTACGGCT 59.517 52.381 0.00 0.00 0.00 5.52
290 291 0.824109 TCCACTTCATCCTACGGCTG 59.176 55.000 0.00 0.00 0.00 4.85
292 293 1.471676 CCACTTCATCCTACGGCTGTC 60.472 57.143 0.00 0.00 0.00 3.51
293 294 1.204704 CACTTCATCCTACGGCTGTCA 59.795 52.381 0.00 0.00 0.00 3.58
294 295 2.111384 ACTTCATCCTACGGCTGTCAT 58.889 47.619 0.00 0.00 0.00 3.06
296 297 3.055094 ACTTCATCCTACGGCTGTCATTT 60.055 43.478 0.00 0.00 0.00 2.32
297 298 3.627395 TCATCCTACGGCTGTCATTTT 57.373 42.857 0.00 0.00 0.00 1.82
300 301 3.695830 TCCTACGGCTGTCATTTTCTT 57.304 42.857 0.00 0.00 0.00 2.52
301 302 4.015872 TCCTACGGCTGTCATTTTCTTT 57.984 40.909 0.00 0.00 0.00 2.52
302 303 4.394729 TCCTACGGCTGTCATTTTCTTTT 58.605 39.130 0.00 0.00 0.00 2.27
331 332 9.853177 TTTCTTTTCTAATCTAATCATCTCCCC 57.147 33.333 0.00 0.00 0.00 4.81
332 333 7.978925 TCTTTTCTAATCTAATCATCTCCCCC 58.021 38.462 0.00 0.00 0.00 5.40
346 347 2.368329 CCCCCTCCTCCCCGATTT 60.368 66.667 0.00 0.00 0.00 2.17
349 350 1.218844 CCCCTCCTCCCCGATTTTTA 58.781 55.000 0.00 0.00 0.00 1.52
350 351 1.143073 CCCCTCCTCCCCGATTTTTAG 59.857 57.143 0.00 0.00 0.00 1.85
351 352 1.143073 CCCTCCTCCCCGATTTTTAGG 59.857 57.143 0.00 0.00 0.00 2.69
359 360 0.396556 CCGATTTTTAGGGGGTGGGG 60.397 60.000 0.00 0.00 0.00 4.96
362 363 2.523740 ATTTTTAGGGGGTGGGGCCG 62.524 60.000 0.00 0.00 38.44 6.13
375 376 4.678423 GGCCGGGCCTTATTTTCT 57.322 55.556 30.86 0.00 46.69 2.52
377 378 0.744874 GGCCGGGCCTTATTTTCTTC 59.255 55.000 30.86 0.00 46.69 2.87
378 379 0.744874 GCCGGGCCTTATTTTCTTCC 59.255 55.000 8.12 0.00 0.00 3.46
380 381 2.452505 CCGGGCCTTATTTTCTTCCAA 58.547 47.619 0.84 0.00 0.00 3.53
382 383 3.450817 CCGGGCCTTATTTTCTTCCAATT 59.549 43.478 0.84 0.00 0.00 2.32
384 385 5.128008 CCGGGCCTTATTTTCTTCCAATTAA 59.872 40.000 0.84 0.00 0.00 1.40
385 386 6.351456 CCGGGCCTTATTTTCTTCCAATTAAA 60.351 38.462 0.84 0.00 0.00 1.52
387 388 7.438160 CGGGCCTTATTTTCTTCCAATTAAATC 59.562 37.037 0.84 0.00 0.00 2.17
388 389 8.264347 GGGCCTTATTTTCTTCCAATTAAATCA 58.736 33.333 0.84 0.00 0.00 2.57
394 395 7.636259 TTTTCTTCCAATTAAATCAAGCACG 57.364 32.000 0.00 0.00 0.00 5.34
395 396 5.309323 TCTTCCAATTAAATCAAGCACGG 57.691 39.130 0.00 0.00 0.00 4.94
397 398 2.757868 TCCAATTAAATCAAGCACGGGG 59.242 45.455 0.00 0.00 0.00 5.73
398 399 2.757868 CCAATTAAATCAAGCACGGGGA 59.242 45.455 0.00 0.00 0.00 4.81
413 414 2.270527 GGAGGGAGCAGGCAAGTC 59.729 66.667 0.00 0.00 0.00 3.01
415 416 1.220477 GAGGGAGCAGGCAAGTCTC 59.780 63.158 0.00 0.00 0.00 3.36
416 417 2.125350 GGGAGCAGGCAAGTCTCG 60.125 66.667 0.00 0.00 0.00 4.04
418 419 1.446966 GGAGCAGGCAAGTCTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
420 421 2.435059 GCAGGCAAGTCTCGTCCC 60.435 66.667 0.00 0.00 0.00 4.46
421 422 2.266055 CAGGCAAGTCTCGTCCCC 59.734 66.667 0.00 0.00 0.00 4.81
422 423 2.120718 AGGCAAGTCTCGTCCCCT 59.879 61.111 0.00 0.00 0.00 4.79
423 424 1.536662 AGGCAAGTCTCGTCCCCTT 60.537 57.895 0.00 0.00 0.00 3.95
424 425 1.128188 AGGCAAGTCTCGTCCCCTTT 61.128 55.000 0.00 0.00 0.00 3.11
426 427 0.034896 GCAAGTCTCGTCCCCTTTCA 59.965 55.000 0.00 0.00 0.00 2.69
427 428 1.339151 GCAAGTCTCGTCCCCTTTCAT 60.339 52.381 0.00 0.00 0.00 2.57
428 429 2.622436 CAAGTCTCGTCCCCTTTCATC 58.378 52.381 0.00 0.00 0.00 2.92
450 451 3.941483 CAGCGTACAATCCCATCTCTTTT 59.059 43.478 0.00 0.00 0.00 2.27
1350 3811 6.449635 TGTTACATACATGCCCATTTCTTC 57.550 37.500 0.00 0.00 0.00 2.87
1406 3867 8.730680 GTTCTGATGACCAAAGTTGTATGTAAT 58.269 33.333 0.00 0.00 0.00 1.89
1419 3880 6.591834 AGTTGTATGTAATTGTGAGTCTCTGC 59.408 38.462 0.65 0.00 0.00 4.26
1420 3881 5.419542 TGTATGTAATTGTGAGTCTCTGCC 58.580 41.667 0.65 0.00 0.00 4.85
1424 3885 3.498774 AATTGTGAGTCTCTGCCAGTT 57.501 42.857 0.65 0.00 0.00 3.16
1425 3886 4.623932 AATTGTGAGTCTCTGCCAGTTA 57.376 40.909 0.65 0.00 0.00 2.24
1426 3887 3.667497 TTGTGAGTCTCTGCCAGTTAG 57.333 47.619 0.65 0.00 0.00 2.34
1441 3902 4.259356 CCAGTTAGTACCTTTAGTTGGGC 58.741 47.826 0.00 0.00 0.00 5.36
1452 3920 1.561643 TAGTTGGGCTGAGAGGACAG 58.438 55.000 0.00 0.00 40.43 3.51
1489 3958 7.493320 ACTCCTCGTAAATTAAAACGCATATCA 59.507 33.333 3.71 0.00 38.94 2.15
1490 3959 8.373048 TCCTCGTAAATTAAAACGCATATCAT 57.627 30.769 3.71 0.00 38.94 2.45
1491 3960 8.279800 TCCTCGTAAATTAAAACGCATATCATG 58.720 33.333 3.71 0.00 38.94 3.07
1492 3961 8.279800 CCTCGTAAATTAAAACGCATATCATGA 58.720 33.333 0.00 0.00 38.94 3.07
1493 3962 9.811655 CTCGTAAATTAAAACGCATATCATGAT 57.188 29.630 13.81 13.81 38.94 2.45
1570 5315 2.664402 ATGGACCTTTCTGCTGTGTT 57.336 45.000 0.00 0.00 0.00 3.32
1582 5327 4.460263 TCTGCTGTGTTATTTGACAACCT 58.540 39.130 0.00 0.00 0.00 3.50
1585 5333 5.971763 TGCTGTGTTATTTGACAACCTTTT 58.028 33.333 0.00 0.00 0.00 2.27
1623 5371 3.745799 TGCAAGGAATTTGTTCTCCGTA 58.254 40.909 0.00 0.00 39.08 4.02
1710 5462 5.184864 TCACCAACACAAATGAACTTGTCTT 59.815 36.000 0.00 0.00 37.43 3.01
1772 5524 7.039882 CGTACAGAAGATTAGGTGTTGGTTAT 58.960 38.462 0.00 0.00 0.00 1.89
1790 5542 6.862209 TGGTTATGTTAAGATCAAATGGCAC 58.138 36.000 0.00 0.00 0.00 5.01
1795 5547 0.813184 AAGATCAAATGGCACGCTGG 59.187 50.000 0.00 0.00 0.00 4.85
1796 5548 1.033746 AGATCAAATGGCACGCTGGG 61.034 55.000 0.00 0.00 0.00 4.45
1818 5570 1.108776 CCCGAGAGTGGGTTAATCGA 58.891 55.000 0.00 0.00 44.76 3.59
1819 5571 1.687123 CCCGAGAGTGGGTTAATCGAT 59.313 52.381 0.00 0.00 44.76 3.59
1831 5585 4.752101 GGGTTAATCGATCCAAGATCAGTG 59.248 45.833 0.00 0.00 0.00 3.66
1834 5588 6.421202 GGTTAATCGATCCAAGATCAGTGTAC 59.579 42.308 0.00 0.00 0.00 2.90
1836 5590 5.598416 ATCGATCCAAGATCAGTGTACAA 57.402 39.130 0.00 0.00 0.00 2.41
1938 5692 6.990349 ACGTATACATAAAATTGGAGGGAGTG 59.010 38.462 3.32 0.00 0.00 3.51
1944 5698 4.541973 AAAATTGGAGGGAGTGAAATGC 57.458 40.909 0.00 0.00 0.00 3.56
2004 8681 4.564769 GTCTCTAGTGCTGTATCTTTGTGC 59.435 45.833 0.00 0.00 0.00 4.57
2015 8692 3.818961 ATCTTTGTGCGACTCAATGTG 57.181 42.857 0.00 0.00 0.00 3.21
2053 8730 3.997672 GCACATAGCTCGGGAGAAT 57.002 52.632 0.00 0.00 41.15 2.40
2055 8732 2.678324 GCACATAGCTCGGGAGAATAC 58.322 52.381 0.00 0.00 41.15 1.89
2130 8807 0.332972 GGAGGGAATTGGCCTGTTCT 59.667 55.000 16.69 2.91 0.00 3.01
2132 8809 1.283321 GAGGGAATTGGCCTGTTCTCT 59.717 52.381 19.09 19.09 37.85 3.10
2156 8848 2.487934 CCAATAGCACGATTCCTGAGG 58.512 52.381 0.00 0.00 0.00 3.86
2184 8876 3.003378 GTCTTGTGCTCTTTGGGTACAAC 59.997 47.826 0.00 0.00 35.17 3.32
2218 8990 4.083080 TCCCTAAAACATACTCCCTCCA 57.917 45.455 0.00 0.00 0.00 3.86
2230 9002 3.922375 ACTCCCTCCATTCCAAAACAAA 58.078 40.909 0.00 0.00 0.00 2.83
2231 9003 4.492646 ACTCCCTCCATTCCAAAACAAAT 58.507 39.130 0.00 0.00 0.00 2.32
2232 9004 4.284234 ACTCCCTCCATTCCAAAACAAATG 59.716 41.667 0.00 0.00 33.57 2.32
2234 9006 4.283212 TCCCTCCATTCCAAAACAAATGTC 59.717 41.667 0.00 0.00 32.20 3.06
2239 9011 6.279882 TCCATTCCAAAACAAATGTCTCAAC 58.720 36.000 0.00 0.00 32.20 3.18
2240 9012 6.098124 TCCATTCCAAAACAAATGTCTCAACT 59.902 34.615 0.00 0.00 32.20 3.16
2242 9014 7.280652 CCATTCCAAAACAAATGTCTCAACTTT 59.719 33.333 0.00 0.00 32.20 2.66
2244 9016 6.696411 TCCAAAACAAATGTCTCAACTTTGT 58.304 32.000 0.00 0.00 43.06 2.83
2245 9017 6.589523 TCCAAAACAAATGTCTCAACTTTGTG 59.410 34.615 1.12 0.00 41.03 3.33
2246 9018 6.242829 CAAAACAAATGTCTCAACTTTGTGC 58.757 36.000 1.12 0.00 41.03 4.57
2247 9019 4.989279 ACAAATGTCTCAACTTTGTGCT 57.011 36.364 0.00 0.00 40.54 4.40
2250 9022 6.265577 ACAAATGTCTCAACTTTGTGCTAAC 58.734 36.000 0.00 0.00 40.54 2.34
2251 9023 6.095440 ACAAATGTCTCAACTTTGTGCTAACT 59.905 34.615 0.00 0.00 40.54 2.24
2252 9024 6.699575 AATGTCTCAACTTTGTGCTAACTT 57.300 33.333 0.00 0.00 0.00 2.66
2255 9027 7.246674 TGTCTCAACTTTGTGCTAACTTTAG 57.753 36.000 0.00 0.00 0.00 1.85
2256 9028 6.821665 TGTCTCAACTTTGTGCTAACTTTAGT 59.178 34.615 0.00 0.00 33.32 2.24
2257 9029 7.982919 TGTCTCAACTTTGTGCTAACTTTAGTA 59.017 33.333 0.00 0.00 33.32 1.82
2282 9083 3.665190 AGTTGTACTAAGCTTGAGGCAC 58.335 45.455 9.86 6.21 44.79 5.01
2283 9084 9.950159 ACAAAGTTGTACTAAGCTTGAGGCACT 62.950 40.741 9.86 1.30 40.57 4.40
2289 9090 6.940298 TGTACTAAGCTTGAGGCACTTATTTT 59.060 34.615 9.86 0.00 41.55 1.82
2290 9091 6.259550 ACTAAGCTTGAGGCACTTATTTTG 57.740 37.500 9.86 0.00 41.55 2.44
2295 9096 3.517296 TGAGGCACTTATTTTGGGACA 57.483 42.857 0.00 0.00 41.55 4.02
2305 9106 5.045797 ACTTATTTTGGGACAGAGGGAGTAC 60.046 44.000 0.00 0.00 42.39 2.73
2319 9120 2.108970 GGAGTACAAGGGTAGGTGAGG 58.891 57.143 0.00 0.00 0.00 3.86
2387 9188 3.701542 TGTTGGTTGACAGCAAATTACCA 59.298 39.130 0.00 0.00 42.02 3.25
2425 9463 8.243426 TGACTTCTATGTGCAAAATAACCATTC 58.757 33.333 0.00 0.00 0.00 2.67
2565 9729 1.114722 TGTTGAAGGCCCTTTGCTGG 61.115 55.000 0.00 0.00 40.92 4.85
2629 9793 9.772973 TGTAGTAATAACAATCAGTCAACAACT 57.227 29.630 0.00 0.00 39.44 3.16
2778 10557 6.380560 AGAGGGAGTACTTTCTGTTATGGTAC 59.619 42.308 0.00 0.00 34.69 3.34
2974 10762 8.672815 GCTAGTCAGAGCTCATATTTTCTTTTT 58.327 33.333 17.77 0.00 39.50 1.94
3075 10863 5.235186 CCAAGTATGATTTCTACCAGAAGCG 59.765 44.000 0.00 0.00 35.37 4.68
3175 10971 2.638855 ACACCTCGTTTACCCATGGTTA 59.361 45.455 11.73 0.00 37.09 2.85
3182 10978 3.945285 CGTTTACCCATGGTTATTGAGCT 59.055 43.478 11.73 0.00 37.09 4.09
3186 10982 7.277396 GTTTACCCATGGTTATTGAGCTAGTA 58.723 38.462 11.73 0.00 37.09 1.82
3193 10990 6.693315 TGGTTATTGAGCTAGTAAATTGCC 57.307 37.500 0.00 0.00 0.00 4.52
3219 11016 1.146263 ACCACATTAGCGCCTAGGC 59.854 57.895 24.75 24.75 37.85 3.93
3232 11029 1.821136 GCCTAGGCTTGCAGAAAACAT 59.179 47.619 27.17 0.00 38.26 2.71
3283 11130 7.334171 CCACTAATTTTTGGGCTAATCTTTTGG 59.666 37.037 0.00 0.00 0.00 3.28
3284 11131 6.878923 ACTAATTTTTGGGCTAATCTTTTGGC 59.121 34.615 0.00 0.00 38.51 4.52
3290 11138 4.384940 TGGGCTAATCTTTTGGCAAAAAC 58.615 39.130 24.15 10.67 40.82 2.43
3331 11180 4.562347 GCCCATCTGATGACGATTATGACT 60.562 45.833 18.92 0.00 0.00 3.41
3428 11351 0.797579 TCCCTCCCTGAAACTACCCT 59.202 55.000 0.00 0.00 0.00 4.34
3576 11501 2.825836 CTCGCATTCCAGGTGGGC 60.826 66.667 0.00 0.00 36.21 5.36
3785 11726 4.821589 CCTCGTGAAGGCCTCGGC 62.822 72.222 5.23 0.00 38.67 5.54
3787 11728 3.997064 CTCGTGAAGGCCTCGGCTG 62.997 68.421 5.23 0.00 38.81 4.85
3838 11779 1.852067 GCATGCGTTCTTCAACCGGT 61.852 55.000 0.00 0.00 0.00 5.28
4301 14575 3.211865 TCCGCATCTAACGTCATCTACT 58.788 45.455 0.00 0.00 0.00 2.57
4302 14576 3.003378 TCCGCATCTAACGTCATCTACTG 59.997 47.826 0.00 0.00 0.00 2.74
4318 14592 5.690997 TCTACTGTAGATCGTTATGCCAG 57.309 43.478 13.34 0.00 0.00 4.85
4330 14604 3.378112 CGTTATGCCAGGTCATCAAATGT 59.622 43.478 0.12 0.00 0.00 2.71
4379 14653 3.726557 AATGCCCAAAGAGACTGATCA 57.273 42.857 0.00 0.00 0.00 2.92
4380 14654 3.726557 ATGCCCAAAGAGACTGATCAA 57.273 42.857 0.00 0.00 0.00 2.57
4383 14657 3.245016 TGCCCAAAGAGACTGATCAATGT 60.245 43.478 0.00 0.00 0.00 2.71
4468 14742 6.959639 TTTCTGCAAACCTAGACTTCAATT 57.040 33.333 0.00 0.00 0.00 2.32
4521 14795 1.303398 AGAGAGACAGAACGCCCGA 60.303 57.895 0.00 0.00 0.00 5.14
4567 14841 8.470002 AGATTGGGATTAAACTTGCTTGATTAC 58.530 33.333 0.00 0.00 0.00 1.89
4576 14850 7.770801 AAACTTGCTTGATTACTTTTCAACC 57.229 32.000 0.00 0.00 0.00 3.77
4613 14887 7.852971 TTATTTAGGCTATGCGTACAAACTT 57.147 32.000 0.00 0.00 0.00 2.66
4647 14921 7.099764 TCACCTCAATCTGAATCTAACTCAAC 58.900 38.462 0.00 0.00 0.00 3.18
4873 15147 5.465051 TCTTCTTCTCATCGTTTGACTGAG 58.535 41.667 0.00 0.00 38.18 3.35
4933 15207 7.987750 TGTGGTATTTTGTTAGAACTGCATA 57.012 32.000 0.00 0.00 0.00 3.14
5175 15503 3.206150 GCAATTAATCGCCTTCCTCAGA 58.794 45.455 0.00 0.00 0.00 3.27
5365 15693 3.455910 TGGATTGCTAACAGTATGCCTCT 59.544 43.478 0.00 0.00 42.53 3.69
5393 15721 4.559862 AGTCCTTCAGTTGATTGGTAGG 57.440 45.455 0.00 0.00 0.00 3.18
5417 15745 7.789831 AGGGAAGTAACTAATGATGGACTGATA 59.210 37.037 0.00 0.00 0.00 2.15
5542 15870 5.441718 AACCTTAAGCTTCCTCATGATCA 57.558 39.130 0.00 0.00 0.00 2.92
5611 15939 5.305644 ACAGTGAAGATTACTCTGGTTCTGT 59.694 40.000 0.00 0.00 34.51 3.41
5639 15967 6.287525 TGAGGTTGATATGCACGATGATTTA 58.712 36.000 0.00 0.00 0.00 1.40
5640 15968 6.936335 TGAGGTTGATATGCACGATGATTTAT 59.064 34.615 0.00 0.00 0.00 1.40
5656 15984 4.894705 TGATTTATTGGATGTGGTCATGGG 59.105 41.667 0.00 0.00 34.06 4.00
5664 15992 3.559069 GATGTGGTCATGGGTGATGATT 58.441 45.455 0.00 0.00 43.20 2.57
5838 16179 0.328258 ATCCTTGAAGTGGGGTTCGG 59.672 55.000 0.00 0.00 0.00 4.30
5918 16260 6.916360 TTTGCAAGAAACTAATCCATCCTT 57.084 33.333 0.00 0.00 0.00 3.36
6032 16374 6.631016 TGAAGTATGACACTCCTGTTATGAC 58.369 40.000 0.00 0.00 36.04 3.06
6049 16391 7.254852 TGTTATGACTTTGGTTTCTTTGTGTC 58.745 34.615 0.00 0.00 0.00 3.67
6113 16455 1.404391 CGATAGACGTTAGTGGCCAGT 59.596 52.381 19.15 19.15 37.22 4.00
6120 16462 2.631545 ACGTTAGTGGCCAGTAAAGACT 59.368 45.455 37.36 22.05 35.80 3.24
6131 16473 2.880890 CAGTAAAGACTGCAGGCTTGTT 59.119 45.455 35.01 22.63 46.41 2.83
6139 16481 1.949525 CTGCAGGCTTGTTGTAGTTGT 59.050 47.619 5.57 0.00 0.00 3.32
6183 16525 0.036483 TGCGCTCAGTTGCAATAGGA 60.036 50.000 9.73 0.00 38.34 2.94
6322 16666 6.582636 TGCTAGATTGAACCATGTAGTTAGG 58.417 40.000 0.00 0.00 0.00 2.69
6423 16768 6.704289 TTGGATGCTTGAAGATTAATCCTG 57.296 37.500 11.92 0.06 35.61 3.86
6429 16774 6.349300 TGCTTGAAGATTAATCCTGGTCTAC 58.651 40.000 11.92 0.00 0.00 2.59
6499 16844 3.849911 ACATATTCTGTGTGTCTCACCG 58.150 45.455 2.72 0.00 45.61 4.94
6579 16924 9.816354 TTCATTTTCTCATATCGTGATGTTCTA 57.184 29.630 0.00 0.00 35.97 2.10
6713 17079 6.826741 GGATAACCAGGCTAGAAAATACACAA 59.173 38.462 0.00 0.00 35.97 3.33
6714 17080 7.502561 GGATAACCAGGCTAGAAAATACACAAT 59.497 37.037 0.00 0.00 35.97 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.093500 TGAAGATGGCGCACAAGTCTAT 60.093 45.455 10.83 0.00 0.00 1.98
128 129 4.651503 TGCCACTTCCATGTAAAAGGAAAA 59.348 37.500 0.00 0.00 42.91 2.29
228 229 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
229 230 2.439156 AAGCAGGCAAGCCGGATC 60.439 61.111 15.46 0.00 41.95 3.36
230 231 2.439156 GAAGCAGGCAAGCCGGAT 60.439 61.111 15.46 5.71 41.95 4.18
231 232 4.722700 GGAAGCAGGCAAGCCGGA 62.723 66.667 15.46 0.00 41.95 5.14
233 234 2.205243 GAAAGGAAGCAGGCAAGCCG 62.205 60.000 5.28 2.12 41.95 5.52
235 236 1.181098 TGGAAAGGAAGCAGGCAAGC 61.181 55.000 0.00 0.00 0.00 4.01
236 237 1.203994 CATGGAAAGGAAGCAGGCAAG 59.796 52.381 0.00 0.00 0.00 4.01
237 238 1.259609 CATGGAAAGGAAGCAGGCAA 58.740 50.000 0.00 0.00 0.00 4.52
238 239 1.252904 GCATGGAAAGGAAGCAGGCA 61.253 55.000 0.00 0.00 0.00 4.75
239 240 0.969409 AGCATGGAAAGGAAGCAGGC 60.969 55.000 0.00 0.00 0.00 4.85
241 242 2.015587 GAGAGCATGGAAAGGAAGCAG 58.984 52.381 0.00 0.00 0.00 4.24
242 243 1.352017 TGAGAGCATGGAAAGGAAGCA 59.648 47.619 0.00 0.00 0.00 3.91
244 245 3.212685 GGATGAGAGCATGGAAAGGAAG 58.787 50.000 0.00 0.00 34.11 3.46
245 246 2.420547 CGGATGAGAGCATGGAAAGGAA 60.421 50.000 0.00 0.00 34.11 3.36
246 247 1.139654 CGGATGAGAGCATGGAAAGGA 59.860 52.381 0.00 0.00 34.11 3.36
247 248 1.134280 ACGGATGAGAGCATGGAAAGG 60.134 52.381 0.00 0.00 34.11 3.11
248 249 1.938577 CACGGATGAGAGCATGGAAAG 59.061 52.381 0.00 0.00 34.11 2.62
249 250 2.013563 GCACGGATGAGAGCATGGAAA 61.014 52.381 0.00 0.00 34.11 3.13
250 251 0.462581 GCACGGATGAGAGCATGGAA 60.463 55.000 0.00 0.00 34.11 3.53
251 252 1.144716 GCACGGATGAGAGCATGGA 59.855 57.895 0.00 0.00 34.11 3.41
252 253 0.463295 AAGCACGGATGAGAGCATGG 60.463 55.000 0.00 0.00 34.11 3.66
253 254 0.935898 GAAGCACGGATGAGAGCATG 59.064 55.000 0.00 0.00 34.11 4.06
254 255 0.179062 GGAAGCACGGATGAGAGCAT 60.179 55.000 0.00 0.00 37.47 3.79
255 256 1.219124 GGAAGCACGGATGAGAGCA 59.781 57.895 0.00 0.00 0.00 4.26
256 257 1.086634 GTGGAAGCACGGATGAGAGC 61.087 60.000 0.00 0.00 0.00 4.09
258 259 0.976641 AAGTGGAAGCACGGATGAGA 59.023 50.000 0.00 0.00 0.00 3.27
261 262 1.667724 GATGAAGTGGAAGCACGGATG 59.332 52.381 0.00 0.00 0.00 3.51
262 263 1.407437 GGATGAAGTGGAAGCACGGAT 60.407 52.381 0.00 0.00 0.00 4.18
263 264 0.036388 GGATGAAGTGGAAGCACGGA 60.036 55.000 0.00 0.00 0.00 4.69
264 265 0.036010 AGGATGAAGTGGAAGCACGG 60.036 55.000 0.00 0.00 0.00 4.94
266 267 2.271800 CGTAGGATGAAGTGGAAGCAC 58.728 52.381 0.00 0.00 0.00 4.40
267 268 2.672961 CGTAGGATGAAGTGGAAGCA 57.327 50.000 0.00 0.00 0.00 3.91
305 306 9.853177 GGGGAGATGATTAGATTAGAAAAGAAA 57.147 33.333 0.00 0.00 0.00 2.52
306 307 8.440771 GGGGGAGATGATTAGATTAGAAAAGAA 58.559 37.037 0.00 0.00 0.00 2.52
329 330 1.580994 AAAAATCGGGGAGGAGGGGG 61.581 60.000 0.00 0.00 0.00 5.40
330 331 1.143073 CTAAAAATCGGGGAGGAGGGG 59.857 57.143 0.00 0.00 0.00 4.79
331 332 1.143073 CCTAAAAATCGGGGAGGAGGG 59.857 57.143 0.00 0.00 0.00 4.30
332 333 1.143073 CCCTAAAAATCGGGGAGGAGG 59.857 57.143 0.00 0.00 42.58 4.30
340 341 0.396556 CCCCACCCCCTAAAAATCGG 60.397 60.000 0.00 0.00 0.00 4.18
341 342 1.040893 GCCCCACCCCCTAAAAATCG 61.041 60.000 0.00 0.00 0.00 3.34
342 343 0.689745 GGCCCCACCCCCTAAAAATC 60.690 60.000 0.00 0.00 0.00 2.17
343 344 1.394557 GGCCCCACCCCCTAAAAAT 59.605 57.895 0.00 0.00 0.00 1.82
344 345 2.863275 GGCCCCACCCCCTAAAAA 59.137 61.111 0.00 0.00 0.00 1.94
359 360 0.744874 GGAAGAAAATAAGGCCCGGC 59.255 55.000 0.00 0.00 0.00 6.13
362 363 8.264347 TGATTTAATTGGAAGAAAATAAGGCCC 58.736 33.333 0.00 0.00 0.00 5.80
363 364 9.665719 TTGATTTAATTGGAAGAAAATAAGGCC 57.334 29.630 0.00 0.00 0.00 5.19
369 370 7.331687 CCGTGCTTGATTTAATTGGAAGAAAAT 59.668 33.333 0.00 0.00 0.00 1.82
370 371 6.644592 CCGTGCTTGATTTAATTGGAAGAAAA 59.355 34.615 0.00 0.00 0.00 2.29
371 372 6.155827 CCGTGCTTGATTTAATTGGAAGAAA 58.844 36.000 0.00 0.00 0.00 2.52
372 373 5.336372 CCCGTGCTTGATTTAATTGGAAGAA 60.336 40.000 0.00 0.00 0.00 2.52
373 374 4.157656 CCCGTGCTTGATTTAATTGGAAGA 59.842 41.667 0.00 0.00 0.00 2.87
374 375 4.423732 CCCGTGCTTGATTTAATTGGAAG 58.576 43.478 0.00 0.00 0.00 3.46
375 376 3.194542 CCCCGTGCTTGATTTAATTGGAA 59.805 43.478 0.00 0.00 0.00 3.53
377 378 2.757868 TCCCCGTGCTTGATTTAATTGG 59.242 45.455 0.00 0.00 0.00 3.16
378 379 3.181487 CCTCCCCGTGCTTGATTTAATTG 60.181 47.826 0.00 0.00 0.00 2.32
380 381 2.654863 CCTCCCCGTGCTTGATTTAAT 58.345 47.619 0.00 0.00 0.00 1.40
382 383 0.254747 CCCTCCCCGTGCTTGATTTA 59.745 55.000 0.00 0.00 0.00 1.40
384 385 1.915078 CTCCCTCCCCGTGCTTGATT 61.915 60.000 0.00 0.00 0.00 2.57
385 386 2.285368 TCCCTCCCCGTGCTTGAT 60.285 61.111 0.00 0.00 0.00 2.57
387 388 4.785453 GCTCCCTCCCCGTGCTTG 62.785 72.222 0.00 0.00 0.00 4.01
394 395 4.120755 CTTGCCTGCTCCCTCCCC 62.121 72.222 0.00 0.00 0.00 4.81
395 396 3.334054 ACTTGCCTGCTCCCTCCC 61.334 66.667 0.00 0.00 0.00 4.30
397 398 1.220477 GAGACTTGCCTGCTCCCTC 59.780 63.158 0.00 0.00 0.00 4.30
398 399 2.654079 CGAGACTTGCCTGCTCCCT 61.654 63.158 0.00 0.00 0.00 4.20
406 407 0.673956 GAAAGGGGACGAGACTTGCC 60.674 60.000 0.00 0.00 0.00 4.52
407 408 0.034896 TGAAAGGGGACGAGACTTGC 59.965 55.000 0.00 0.00 0.00 4.01
408 409 2.028112 TGATGAAAGGGGACGAGACTTG 60.028 50.000 0.00 0.00 0.00 3.16
409 410 2.234908 CTGATGAAAGGGGACGAGACTT 59.765 50.000 0.00 0.00 0.00 3.01
410 411 1.827969 CTGATGAAAGGGGACGAGACT 59.172 52.381 0.00 0.00 0.00 3.24
413 414 0.807667 CGCTGATGAAAGGGGACGAG 60.808 60.000 0.00 0.00 0.00 4.18
415 416 0.174845 TACGCTGATGAAAGGGGACG 59.825 55.000 0.00 0.00 34.56 4.79
416 417 1.066430 TGTACGCTGATGAAAGGGGAC 60.066 52.381 0.00 0.00 42.78 4.46
418 419 2.107950 TTGTACGCTGATGAAAGGGG 57.892 50.000 0.00 0.00 34.56 4.79
420 421 2.614057 GGGATTGTACGCTGATGAAAGG 59.386 50.000 0.00 0.00 0.00 3.11
421 422 3.270027 TGGGATTGTACGCTGATGAAAG 58.730 45.455 0.00 0.00 0.00 2.62
422 423 3.342377 TGGGATTGTACGCTGATGAAA 57.658 42.857 0.00 0.00 0.00 2.69
423 424 3.134623 AGATGGGATTGTACGCTGATGAA 59.865 43.478 0.00 0.00 0.00 2.57
424 425 2.700371 AGATGGGATTGTACGCTGATGA 59.300 45.455 0.00 0.00 0.00 2.92
426 427 2.968574 AGAGATGGGATTGTACGCTGAT 59.031 45.455 0.00 0.00 0.00 2.90
427 428 2.388735 AGAGATGGGATTGTACGCTGA 58.611 47.619 0.00 0.00 0.00 4.26
428 429 2.898729 AGAGATGGGATTGTACGCTG 57.101 50.000 0.00 0.00 0.00 5.18
988 3445 2.043652 CTCCATGGGTGGCCAAGG 60.044 66.667 7.24 4.92 45.63 3.61
1276 3733 1.543802 GATGTAGCGGAGGAGGAGATG 59.456 57.143 0.00 0.00 0.00 2.90
1350 3811 3.851403 CGAAATTATTTGCAACCTCACGG 59.149 43.478 0.00 0.00 0.00 4.94
1357 3818 7.116061 ACCAATCAACGAAATTATTTGCAAC 57.884 32.000 0.00 0.00 0.00 4.17
1406 3867 2.965831 ACTAACTGGCAGAGACTCACAA 59.034 45.455 23.66 0.00 0.00 3.33
1419 3880 4.019591 AGCCCAACTAAAGGTACTAACTGG 60.020 45.833 0.00 0.00 38.49 4.00
1420 3881 4.935808 CAGCCCAACTAAAGGTACTAACTG 59.064 45.833 0.00 0.00 38.49 3.16
1424 3885 4.680407 TCTCAGCCCAACTAAAGGTACTA 58.320 43.478 0.00 0.00 38.49 1.82
1426 3887 3.369576 CCTCTCAGCCCAACTAAAGGTAC 60.370 52.174 0.00 0.00 0.00 3.34
1441 3902 2.752354 ACGATCAAGACTGTCCTCTCAG 59.248 50.000 3.76 0.00 40.80 3.35
1452 3920 4.871993 TTACGAGGAGTACGATCAAGAC 57.128 45.455 0.00 0.00 34.56 3.01
1494 3963 9.771534 GGAGCTTATGTTGAGTTAAGAAGATAT 57.228 33.333 0.00 0.00 0.00 1.63
1570 5315 6.418057 AGGATGCAAAAAGGTTGTCAAATA 57.582 33.333 0.00 0.00 0.00 1.40
1585 5333 6.239543 TTCCTTGCAGAAATAAAAGGATGCAA 60.240 34.615 9.71 9.71 45.73 4.08
1623 5371 7.119846 GCACTACAAAGTAAATCTGAGGTTCAT 59.880 37.037 0.00 0.00 33.48 2.57
1723 5475 8.956426 ACGAAATACTGATTACCAATTGAACAT 58.044 29.630 7.12 0.00 0.00 2.71
1727 5479 9.093970 CTGTACGAAATACTGATTACCAATTGA 57.906 33.333 7.12 0.00 35.31 2.57
1731 5483 8.525316 TCTTCTGTACGAAATACTGATTACCAA 58.475 33.333 0.00 0.00 40.33 3.67
1772 5524 3.081061 AGCGTGCCATTTGATCTTAACA 58.919 40.909 0.00 0.00 0.00 2.41
1800 5552 2.288273 GGATCGATTAACCCACTCTCGG 60.288 54.545 0.00 0.00 0.00 4.63
1802 5554 4.099573 TCTTGGATCGATTAACCCACTCTC 59.900 45.833 0.00 0.00 0.00 3.20
1803 5555 4.030913 TCTTGGATCGATTAACCCACTCT 58.969 43.478 0.00 0.00 0.00 3.24
1911 5665 8.707449 ACTCCCTCCAATTTTATGTATACGTTA 58.293 33.333 2.23 0.00 0.00 3.18
1912 5666 7.497909 CACTCCCTCCAATTTTATGTATACGTT 59.502 37.037 2.23 0.00 0.00 3.99
1913 5667 6.990349 CACTCCCTCCAATTTTATGTATACGT 59.010 38.462 2.56 2.56 0.00 3.57
1914 5668 7.214381 TCACTCCCTCCAATTTTATGTATACG 58.786 38.462 0.00 0.00 0.00 3.06
1915 5669 8.974060 TTCACTCCCTCCAATTTTATGTATAC 57.026 34.615 0.00 0.00 0.00 1.47
1917 5671 8.917088 CATTTCACTCCCTCCAATTTTATGTAT 58.083 33.333 0.00 0.00 0.00 2.29
1918 5672 7.147915 GCATTTCACTCCCTCCAATTTTATGTA 60.148 37.037 0.00 0.00 0.00 2.29
1919 5673 6.351286 GCATTTCACTCCCTCCAATTTTATGT 60.351 38.462 0.00 0.00 0.00 2.29
1920 5674 6.044682 GCATTTCACTCCCTCCAATTTTATG 58.955 40.000 0.00 0.00 0.00 1.90
2004 8681 1.725641 TAGCAAGGCACATTGAGTCG 58.274 50.000 0.00 0.00 31.55 4.18
2037 8714 1.887198 CCGTATTCTCCCGAGCTATGT 59.113 52.381 0.00 0.00 0.00 2.29
2039 8716 1.887198 CACCGTATTCTCCCGAGCTAT 59.113 52.381 0.00 0.00 0.00 2.97
2053 8730 1.122632 TTCTGGGTTGCTCCACCGTA 61.123 55.000 1.43 0.00 37.76 4.02
2055 8732 0.821711 TTTTCTGGGTTGCTCCACCG 60.822 55.000 1.43 0.00 37.76 4.94
2156 8848 1.002033 CAAAGAGCACAAGACACCAGC 60.002 52.381 0.00 0.00 0.00 4.85
2218 8990 7.823799 ACAAAGTTGAGACATTTGTTTTGGAAT 59.176 29.630 0.00 0.00 42.82 3.01
2230 9002 6.699575 AAAGTTAGCACAAAGTTGAGACAT 57.300 33.333 0.00 0.00 0.00 3.06
2231 9003 6.821665 ACTAAAGTTAGCACAAAGTTGAGACA 59.178 34.615 0.00 0.00 34.09 3.41
2232 9004 7.247929 ACTAAAGTTAGCACAAAGTTGAGAC 57.752 36.000 0.00 0.00 34.09 3.36
2234 9006 8.138365 TGTACTAAAGTTAGCACAAAGTTGAG 57.862 34.615 2.29 0.00 34.88 3.02
2240 9012 8.732531 ACAACTTTGTACTAAAGTTAGCACAAA 58.267 29.630 23.56 20.59 46.64 2.83
2242 9014 7.852971 ACAACTTTGTACTAAAGTTAGCACA 57.147 32.000 23.56 0.82 45.57 4.57
2256 9028 5.699458 GCCTCAAGCTTAGTACAACTTTGTA 59.301 40.000 0.00 0.00 39.52 2.41
2257 9029 4.515567 GCCTCAAGCTTAGTACAACTTTGT 59.484 41.667 0.00 0.00 41.00 2.83
2259 9031 4.515567 GTGCCTCAAGCTTAGTACAACTTT 59.484 41.667 0.00 0.00 44.23 2.66
2261 9033 3.325135 AGTGCCTCAAGCTTAGTACAACT 59.675 43.478 0.00 0.00 44.23 3.16
2262 9034 3.665190 AGTGCCTCAAGCTTAGTACAAC 58.335 45.455 0.00 0.00 44.23 3.32
2263 9035 4.351874 AAGTGCCTCAAGCTTAGTACAA 57.648 40.909 0.00 0.00 44.23 2.41
2264 9036 5.677319 ATAAGTGCCTCAAGCTTAGTACA 57.323 39.130 0.00 0.00 44.23 2.90
2265 9037 6.986904 AAATAAGTGCCTCAAGCTTAGTAC 57.013 37.500 0.00 0.86 44.23 2.73
2266 9038 6.374333 CCAAAATAAGTGCCTCAAGCTTAGTA 59.626 38.462 0.00 0.00 44.23 1.82
2267 9039 5.183904 CCAAAATAAGTGCCTCAAGCTTAGT 59.816 40.000 0.00 0.00 44.23 2.24
2268 9040 5.393461 CCCAAAATAAGTGCCTCAAGCTTAG 60.393 44.000 0.00 0.00 44.23 2.18
2272 9044 2.825532 TCCCAAAATAAGTGCCTCAAGC 59.174 45.455 0.00 0.00 44.14 4.01
2273 9045 3.826157 TGTCCCAAAATAAGTGCCTCAAG 59.174 43.478 0.00 0.00 0.00 3.02
2276 9048 3.686016 TCTGTCCCAAAATAAGTGCCTC 58.314 45.455 0.00 0.00 0.00 4.70
2277 9049 3.562176 CCTCTGTCCCAAAATAAGTGCCT 60.562 47.826 0.00 0.00 0.00 4.75
2279 9080 2.755103 CCCTCTGTCCCAAAATAAGTGC 59.245 50.000 0.00 0.00 0.00 4.40
2282 9083 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
2283 9084 4.847512 TGTACTCCCTCTGTCCCAAAATAA 59.152 41.667 0.00 0.00 0.00 1.40
2289 9090 1.552486 CCTTGTACTCCCTCTGTCCCA 60.552 57.143 0.00 0.00 0.00 4.37
2290 9091 1.196012 CCTTGTACTCCCTCTGTCCC 58.804 60.000 0.00 0.00 0.00 4.46
2295 9096 2.009165 ACCTACCCTTGTACTCCCTCT 58.991 52.381 0.00 0.00 0.00 3.69
2305 9106 1.339151 GCTGAACCTCACCTACCCTTG 60.339 57.143 0.00 0.00 0.00 3.61
2319 9120 2.740981 CTGTGAAGTCTCCATGCTGAAC 59.259 50.000 0.00 0.00 0.00 3.18
2387 9188 4.080129 ACATAGAAGTCACCCAATCAGCAT 60.080 41.667 0.00 0.00 0.00 3.79
2425 9463 7.170320 TCACTAAAACGTTCAGCCTTTAAGTAG 59.830 37.037 0.00 0.00 0.00 2.57
2565 9729 2.143876 AGGGTATGGAATGTGCAACC 57.856 50.000 0.00 0.00 34.36 3.77
2567 9731 3.257873 CACAAAGGGTATGGAATGTGCAA 59.742 43.478 0.00 0.00 32.76 4.08
2660 9824 8.142485 AGGGAGTAGCTACTAACAATTAACAA 57.858 34.615 26.11 0.00 36.50 2.83
2663 9827 6.040166 CGGAGGGAGTAGCTACTAACAATTAA 59.960 42.308 26.11 0.00 36.50 1.40
2667 9831 3.285484 CGGAGGGAGTAGCTACTAACAA 58.715 50.000 26.11 0.00 36.50 2.83
2749 10528 4.120946 ACAGAAAGTACTCCCTCTGTCT 57.879 45.455 21.08 7.64 43.92 3.41
2778 10557 3.862642 GCGAGGGGATATAGAAGTTGCAG 60.863 52.174 0.00 0.00 0.00 4.41
2974 10762 2.098934 GCACCAACAGATCAACACAACA 59.901 45.455 0.00 0.00 0.00 3.33
3057 10845 3.055094 ACCACGCTTCTGGTAGAAATCAT 60.055 43.478 0.00 0.00 43.19 2.45
3075 10863 0.394352 CCCCAAGCCTATGACACCAC 60.394 60.000 0.00 0.00 0.00 4.16
3175 10971 6.873605 GGTTTTTGGCAATTTACTAGCTCAAT 59.126 34.615 0.00 0.00 0.00 2.57
3182 10978 5.128827 TGTGGTGGTTTTTGGCAATTTACTA 59.871 36.000 0.00 0.00 0.00 1.82
3186 10982 3.356529 TGTGGTGGTTTTTGGCAATTT 57.643 38.095 0.00 0.00 0.00 1.82
3193 10990 2.058057 GCGCTAATGTGGTGGTTTTTG 58.942 47.619 0.00 0.00 0.00 2.44
3219 11016 5.277825 TCGTAAACCAATGTTTTCTGCAAG 58.722 37.500 0.00 0.00 41.92 4.01
3232 11029 4.920640 TTGGCAAGAAATCGTAAACCAA 57.079 36.364 0.00 0.00 33.72 3.67
3271 11118 6.923508 ACTAGTGTTTTTGCCAAAAGATTAGC 59.076 34.615 16.98 0.00 38.24 3.09
3283 11130 4.243007 AGCCATCAACTAGTGTTTTTGC 57.757 40.909 0.00 0.00 33.52 3.68
3284 11131 5.463061 CCAAAGCCATCAACTAGTGTTTTTG 59.537 40.000 0.00 1.87 33.52 2.44
3290 11138 2.927553 GCCAAAGCCATCAACTAGTG 57.072 50.000 0.00 0.00 0.00 2.74
3455 11378 0.163146 GGTTACAAAGCTCGCACGAC 59.837 55.000 0.00 0.00 0.00 4.34
3461 11384 0.245539 TCCTCGGGTTACAAAGCTCG 59.754 55.000 0.00 0.00 0.00 5.03
3581 11506 3.712907 GACCCAACAGGCGCCCTA 61.713 66.667 26.15 0.00 40.58 3.53
3590 11515 3.182263 CACCCCCAGGACCCAACA 61.182 66.667 0.00 0.00 36.73 3.33
3702 11630 1.126488 CCCTCTGCCATGAAGCTCTA 58.874 55.000 0.00 0.00 0.00 2.43
4108 12052 2.282040 AAGCAGCCGAGCAAAGCT 60.282 55.556 0.00 0.00 43.88 3.74
4301 14575 3.028130 TGACCTGGCATAACGATCTACA 58.972 45.455 0.00 0.00 0.00 2.74
4302 14576 3.728076 TGACCTGGCATAACGATCTAC 57.272 47.619 0.00 0.00 0.00 2.59
4318 14592 1.272425 TGGGTCCCACATTTGATGACC 60.272 52.381 6.47 10.44 40.84 4.02
4330 14604 1.281867 GATTCTGACATGTGGGTCCCA 59.718 52.381 6.47 6.47 36.97 4.37
4346 14620 6.454795 TCTTTGGGCATTTTAACTGTGATTC 58.545 36.000 0.00 0.00 0.00 2.52
4422 14696 5.838531 ACACCGGTTTAAGAATTTGTGAA 57.161 34.783 2.97 0.00 0.00 3.18
4468 14742 3.450457 AGTGAATTGCAGAAAACCACCAA 59.550 39.130 0.00 0.00 0.00 3.67
4521 14795 0.981183 TTGTTCCCCTGCTATCACGT 59.019 50.000 0.00 0.00 0.00 4.49
4576 14850 4.432712 GCCTAAATAATGGCCAAACACTG 58.567 43.478 10.96 0.00 43.11 3.66
4613 14887 6.857437 TTCAGATTGAGGTGAAGTCAGATA 57.143 37.500 0.00 0.00 0.00 1.98
4721 14995 7.070821 AGAGTTCCTTACTTTCAACTCCAGTAA 59.929 37.037 6.98 0.00 43.92 2.24
4731 15005 6.326583 TCCAAGAAGAGAGTTCCTTACTTTCA 59.673 38.462 0.00 0.00 39.77 2.69
4933 15207 5.924254 CAGTCACATGCAAATGAACTTCAAT 59.076 36.000 4.93 0.00 0.00 2.57
5365 15693 4.982241 ATCAACTGAAGGACTTGGAGAA 57.018 40.909 0.00 0.00 0.00 2.87
5393 15721 7.600752 GCTATCAGTCCATCATTAGTTACTTCC 59.399 40.741 0.00 0.00 0.00 3.46
5542 15870 5.738909 CCCAGTACTTGAAATCAGAGATGT 58.261 41.667 0.00 0.00 0.00 3.06
5611 15939 5.414144 TCATCGTGCATATCAACCTCAAAAA 59.586 36.000 0.00 0.00 0.00 1.94
5639 15967 1.640149 TCACCCATGACCACATCCAAT 59.360 47.619 0.00 0.00 34.15 3.16
5640 15968 1.071434 TCACCCATGACCACATCCAA 58.929 50.000 0.00 0.00 34.15 3.53
5656 15984 6.688637 TGAATTCACCATCAGAATCATCAC 57.311 37.500 3.38 0.00 34.78 3.06
5664 15992 7.118060 TCCACATAATTGAATTCACCATCAGA 58.882 34.615 7.89 0.00 0.00 3.27
5838 16179 5.182001 AGAGAATCACACATAACAAAGTGCC 59.818 40.000 0.00 0.00 39.30 5.01
5918 16260 1.064758 ACAACCCAGTCTCACAGCAAA 60.065 47.619 0.00 0.00 0.00 3.68
6021 16363 6.605594 ACAAAGAAACCAAAGTCATAACAGGA 59.394 34.615 0.00 0.00 0.00 3.86
6032 16374 3.447742 GGCAGACACAAAGAAACCAAAG 58.552 45.455 0.00 0.00 0.00 2.77
6067 16409 2.164219 GCGCCATTTTGAGAGGATTCAA 59.836 45.455 0.00 0.00 35.38 2.69
6094 16436 4.644103 TTACTGGCCACTAACGTCTATC 57.356 45.455 0.00 0.00 0.00 2.08
6113 16455 2.930950 ACAACAAGCCTGCAGTCTTTA 58.069 42.857 7.40 0.00 0.00 1.85
6120 16462 2.051334 ACAACTACAACAAGCCTGCA 57.949 45.000 0.00 0.00 0.00 4.41
6124 16466 3.157932 TGCAAACAACTACAACAAGCC 57.842 42.857 0.00 0.00 0.00 4.35
6128 16470 6.040955 TCCCATTATTGCAAACAACTACAACA 59.959 34.615 1.71 0.00 38.99 3.33
6131 16473 6.629128 CATCCCATTATTGCAAACAACTACA 58.371 36.000 1.71 0.00 38.99 2.74
6139 16481 4.025360 AGACAGCATCCCATTATTGCAAA 58.975 39.130 1.71 0.00 38.84 3.68
6183 16525 6.819649 CCATGTGACAAATCAAATAATGGCTT 59.180 34.615 0.00 0.00 36.31 4.35
6252 16594 7.831193 ACCATTTCTAGTGTTGCAGAGATATTT 59.169 33.333 0.00 0.00 0.00 1.40
6260 16604 5.048504 ACATCAACCATTTCTAGTGTTGCAG 60.049 40.000 0.00 0.00 38.32 4.41
6322 16666 3.934068 TCCGTGGGAGATAAGTTTGTTC 58.066 45.455 0.00 0.00 0.00 3.18
6345 16689 2.622942 GGCAAATCAAGACCTGTGAACA 59.377 45.455 0.00 0.00 0.00 3.18
6353 16697 0.613012 AGGCAGGGCAAATCAAGACC 60.613 55.000 0.00 0.00 0.00 3.85
6423 16768 8.910944 TCAACTATTCTACTAACCATGTAGACC 58.089 37.037 3.46 0.00 43.92 3.85
6499 16844 6.170506 TCCGCAAATATTATATCTGGTGACC 58.829 40.000 0.00 0.00 0.00 4.02
6678 17044 3.785887 AGCCTGGTTATCCTTTATGGTCA 59.214 43.478 0.00 0.00 37.07 4.02
6714 17080 9.333724 GGGTTATAGCAGCTTAGTATGTTTTTA 57.666 33.333 0.00 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.