Multiple sequence alignment - TraesCS2B01G084900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G084900 chr2B 100.000 3841 0 0 1 3841 47431890 47428050 0.000000e+00 7094.0
1 TraesCS2B01G084900 chr2B 79.153 921 131 39 1897 2805 47457270 47456399 7.150000e-162 580.0
2 TraesCS2B01G084900 chr2B 84.635 397 59 2 3384 3779 47178403 47178798 1.000000e-105 394.0
3 TraesCS2B01G084900 chr2B 89.143 175 18 1 2626 2800 47178222 47178395 2.320000e-52 217.0
4 TraesCS2B01G084900 chr2A 81.175 1992 276 46 847 2807 31172606 31174529 0.000000e+00 1509.0
5 TraesCS2B01G084900 chr2A 80.174 918 116 42 1897 2805 31165038 31165898 9.060000e-176 627.0
6 TraesCS2B01G084900 chr2A 89.880 415 42 0 3365 3779 31174519 31174933 5.650000e-148 534.0
7 TraesCS2B01G084900 chr2A 77.679 336 42 18 116 424 31172017 31172346 1.420000e-39 174.0
8 TraesCS2B01G084900 chr6A 98.929 560 6 0 2806 3365 479630119 479630678 0.000000e+00 1002.0
9 TraesCS2B01G084900 chr5B 98.584 565 8 0 2801 3365 87291700 87292264 0.000000e+00 1000.0
10 TraesCS2B01G084900 chr5B 98.927 559 6 0 2807 3365 106162765 106163323 0.000000e+00 1000.0
11 TraesCS2B01G084900 chr5B 98.927 559 6 0 2807 3365 106169053 106169611 0.000000e+00 1000.0
12 TraesCS2B01G084900 chr5B 98.927 559 6 0 2807 3365 106175212 106175770 0.000000e+00 1000.0
13 TraesCS2B01G084900 chr5A 98.752 561 7 0 2805 3365 554241906 554241346 0.000000e+00 998.0
14 TraesCS2B01G084900 chr1B 98.752 561 7 0 2805 3365 280701080 280701640 0.000000e+00 998.0
15 TraesCS2B01G084900 chr1B 97.059 34 0 1 745 778 94829265 94829297 5.360000e-04 56.5
16 TraesCS2B01G084900 chr6B 98.413 567 8 1 2799 3365 672879352 672879917 0.000000e+00 996.0
17 TraesCS2B01G084900 chr6B 79.034 849 146 21 999 1822 115898 115057 1.560000e-153 553.0
18 TraesCS2B01G084900 chr6B 78.706 850 147 22 999 1822 137493 136652 1.570000e-148 536.0
19 TraesCS2B01G084900 chr3B 98.574 561 8 0 2805 3365 559096383 559096943 0.000000e+00 992.0
20 TraesCS2B01G084900 chr2D 79.913 921 120 41 1897 2805 29178881 29179748 1.960000e-172 616.0
21 TraesCS2B01G084900 chr6D 78.798 882 148 20 999 1850 2325465 2324593 1.210000e-154 556.0
22 TraesCS2B01G084900 chr4B 96.226 106 4 0 3583 3688 561858365 561858260 1.420000e-39 174.0
23 TraesCS2B01G084900 chr4A 100.000 28 0 0 751 778 636101333 636101306 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G084900 chr2B 47428050 47431890 3840 True 7094.0 7094 100.000000 1 3841 1 chr2B.!!$R1 3840
1 TraesCS2B01G084900 chr2B 47456399 47457270 871 True 580.0 580 79.153000 1897 2805 1 chr2B.!!$R2 908
2 TraesCS2B01G084900 chr2B 47178222 47178798 576 False 305.5 394 86.889000 2626 3779 2 chr2B.!!$F1 1153
3 TraesCS2B01G084900 chr2A 31172017 31174933 2916 False 739.0 1509 82.911333 116 3779 3 chr2A.!!$F2 3663
4 TraesCS2B01G084900 chr2A 31165038 31165898 860 False 627.0 627 80.174000 1897 2805 1 chr2A.!!$F1 908
5 TraesCS2B01G084900 chr6A 479630119 479630678 559 False 1002.0 1002 98.929000 2806 3365 1 chr6A.!!$F1 559
6 TraesCS2B01G084900 chr5B 87291700 87292264 564 False 1000.0 1000 98.584000 2801 3365 1 chr5B.!!$F1 564
7 TraesCS2B01G084900 chr5B 106162765 106163323 558 False 1000.0 1000 98.927000 2807 3365 1 chr5B.!!$F2 558
8 TraesCS2B01G084900 chr5B 106169053 106169611 558 False 1000.0 1000 98.927000 2807 3365 1 chr5B.!!$F3 558
9 TraesCS2B01G084900 chr5B 106175212 106175770 558 False 1000.0 1000 98.927000 2807 3365 1 chr5B.!!$F4 558
10 TraesCS2B01G084900 chr5A 554241346 554241906 560 True 998.0 998 98.752000 2805 3365 1 chr5A.!!$R1 560
11 TraesCS2B01G084900 chr1B 280701080 280701640 560 False 998.0 998 98.752000 2805 3365 1 chr1B.!!$F2 560
12 TraesCS2B01G084900 chr6B 672879352 672879917 565 False 996.0 996 98.413000 2799 3365 1 chr6B.!!$F1 566
13 TraesCS2B01G084900 chr6B 115057 115898 841 True 553.0 553 79.034000 999 1822 1 chr6B.!!$R1 823
14 TraesCS2B01G084900 chr6B 136652 137493 841 True 536.0 536 78.706000 999 1822 1 chr6B.!!$R2 823
15 TraesCS2B01G084900 chr3B 559096383 559096943 560 False 992.0 992 98.574000 2805 3365 1 chr3B.!!$F1 560
16 TraesCS2B01G084900 chr2D 29178881 29179748 867 False 616.0 616 79.913000 1897 2805 1 chr2D.!!$F1 908
17 TraesCS2B01G084900 chr6D 2324593 2325465 872 True 556.0 556 78.798000 999 1850 1 chr6D.!!$R1 851

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.035458 ACCTCCAGAAGCAGGTTTCG 59.965 55.0 0.00 0.00 40.35 3.46 F
65 66 0.035458 CCTCCAGAAGCAGGTTTCGT 59.965 55.0 0.00 0.00 32.33 3.85 F
543 577 0.036732 AATTTGGAGGCAGTCGCTGA 59.963 50.0 10.46 0.00 38.60 4.26 F
553 587 0.179124 CAGTCGCTGAAGAGCCTACC 60.179 60.0 1.18 0.00 42.91 3.18 F
882 916 0.451783 CCTGTAAAACCAGCGATGGC 59.548 55.0 21.97 3.04 40.37 4.40 F
1528 1568 0.040514 CGTTGGCATTGAAGACGCAA 60.041 50.0 0.00 0.00 0.00 4.85 F
1852 1918 0.391263 GTTCGGACCATCCACCTCAC 60.391 60.0 0.00 0.00 35.91 3.51 F
1964 2034 0.953471 TGACACAATGTGGCGCTACC 60.953 55.0 21.89 4.26 45.98 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1014 1048 0.323360 GTAGGCTTTCCATGGCACCA 60.323 55.000 6.96 0.00 33.74 4.17 R
1276 1316 0.390860 AGCTTGCTCGAGTTGACTGT 59.609 50.000 15.13 0.00 0.00 3.55 R
1418 1458 0.512952 AACAGCATCGTCGACTTTGC 59.487 50.000 24.02 24.02 35.34 3.68 R
1528 1568 0.684805 CTCTCGGTTAGCTGGTCCCT 60.685 60.000 0.00 0.00 0.00 4.20 R
1734 1792 1.059913 CCAGTTCCAGTTCCAGGAGT 58.940 55.000 0.00 0.00 36.33 3.85 R
2390 2477 1.263484 GCATGCATGAATCCGACTGAG 59.737 52.381 30.64 0.00 0.00 3.35 R
2711 2813 1.553248 AGCTTGTAGACATTGCCGGTA 59.447 47.619 1.90 0.00 0.00 4.02 R
3411 3513 1.739049 CGGCACACCACCACATTTT 59.261 52.632 0.00 0.00 34.57 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.905018 TTTTTCCCCCTCATCCCCA 58.095 52.632 0.00 0.00 0.00 4.96
25 26 1.403089 TTTTTCCCCCTCATCCCCAT 58.597 50.000 0.00 0.00 0.00 4.00
26 27 0.933700 TTTTCCCCCTCATCCCCATC 59.066 55.000 0.00 0.00 0.00 3.51
27 28 0.254059 TTTCCCCCTCATCCCCATCA 60.254 55.000 0.00 0.00 0.00 3.07
28 29 0.698886 TTCCCCCTCATCCCCATCAG 60.699 60.000 0.00 0.00 0.00 2.90
29 30 1.073474 CCCCCTCATCCCCATCAGA 60.073 63.158 0.00 0.00 0.00 3.27
30 31 1.132554 CCCCCTCATCCCCATCAGAG 61.133 65.000 0.00 0.00 0.00 3.35
31 32 1.132554 CCCCTCATCCCCATCAGAGG 61.133 65.000 0.00 0.00 45.68 3.69
32 33 1.759881 CCTCATCCCCATCAGAGGC 59.240 63.158 0.00 0.00 40.98 4.70
33 34 1.058428 CCTCATCCCCATCAGAGGCA 61.058 60.000 0.00 0.00 40.98 4.75
34 35 0.108207 CTCATCCCCATCAGAGGCAC 59.892 60.000 0.00 0.00 0.00 5.01
36 37 0.549950 CATCCCCATCAGAGGCACTT 59.450 55.000 0.00 0.00 41.55 3.16
37 38 0.842635 ATCCCCATCAGAGGCACTTC 59.157 55.000 0.00 0.00 41.55 3.01
38 39 0.547471 TCCCCATCAGAGGCACTTCA 60.547 55.000 0.00 0.00 41.55 3.02
39 40 0.107312 CCCCATCAGAGGCACTTCAG 60.107 60.000 0.00 0.00 41.55 3.02
40 41 0.907486 CCCATCAGAGGCACTTCAGA 59.093 55.000 0.00 0.00 41.55 3.27
41 42 1.134461 CCCATCAGAGGCACTTCAGAG 60.134 57.143 0.00 0.00 41.55 3.35
42 43 1.134461 CCATCAGAGGCACTTCAGAGG 60.134 57.143 0.00 0.00 41.55 3.69
43 44 0.540923 ATCAGAGGCACTTCAGAGGC 59.459 55.000 0.00 0.00 41.55 4.70
47 48 2.360475 GGCACTTCAGAGGCCACC 60.360 66.667 5.01 0.00 46.92 4.61
48 49 2.753029 GCACTTCAGAGGCCACCT 59.247 61.111 5.01 0.00 36.03 4.00
56 57 2.270527 GAGGCCACCTCCAGAAGC 59.729 66.667 5.01 0.00 44.36 3.86
57 58 2.530151 AGGCCACCTCCAGAAGCA 60.530 61.111 5.01 0.00 0.00 3.91
58 59 2.045536 GGCCACCTCCAGAAGCAG 60.046 66.667 0.00 0.00 0.00 4.24
59 60 2.045536 GCCACCTCCAGAAGCAGG 60.046 66.667 0.00 0.00 35.69 4.85
60 61 2.900106 GCCACCTCCAGAAGCAGGT 61.900 63.158 0.00 0.00 44.42 4.00
61 62 1.763770 CCACCTCCAGAAGCAGGTT 59.236 57.895 0.00 0.00 41.41 3.50
62 63 0.111253 CCACCTCCAGAAGCAGGTTT 59.889 55.000 0.00 0.00 41.41 3.27
63 64 1.528129 CACCTCCAGAAGCAGGTTTC 58.472 55.000 0.00 0.00 41.41 2.78
64 65 0.035458 ACCTCCAGAAGCAGGTTTCG 59.965 55.000 0.00 0.00 40.35 3.46
65 66 0.035458 CCTCCAGAAGCAGGTTTCGT 59.965 55.000 0.00 0.00 32.33 3.85
66 67 1.151668 CTCCAGAAGCAGGTTTCGTG 58.848 55.000 0.00 0.00 32.33 4.35
67 68 0.884704 TCCAGAAGCAGGTTTCGTGC 60.885 55.000 6.35 6.35 44.27 5.34
72 73 3.044305 GCAGGTTTCGTGCTCGCT 61.044 61.111 2.69 0.00 41.29 4.93
73 74 2.856032 CAGGTTTCGTGCTCGCTG 59.144 61.111 2.69 1.35 36.96 5.18
74 75 3.044305 AGGTTTCGTGCTCGCTGC 61.044 61.111 2.69 0.00 43.25 5.25
75 76 3.044305 GGTTTCGTGCTCGCTGCT 61.044 61.111 2.69 0.00 43.37 4.24
76 77 2.171940 GTTTCGTGCTCGCTGCTG 59.828 61.111 2.69 0.00 43.37 4.41
77 78 3.043713 TTTCGTGCTCGCTGCTGG 61.044 61.111 2.69 0.00 43.37 4.85
88 89 2.743538 CTGCTGGCGTGCTTGCTA 60.744 61.111 9.91 0.00 34.52 3.49
89 90 2.046023 TGCTGGCGTGCTTGCTAT 60.046 55.556 9.91 0.00 34.52 2.97
90 91 2.319011 CTGCTGGCGTGCTTGCTATG 62.319 60.000 9.91 0.00 34.52 2.23
91 92 2.108514 GCTGGCGTGCTTGCTATGA 61.109 57.895 0.92 0.00 34.52 2.15
92 93 1.442526 GCTGGCGTGCTTGCTATGAT 61.443 55.000 0.92 0.00 34.52 2.45
93 94 1.869774 CTGGCGTGCTTGCTATGATA 58.130 50.000 0.92 0.00 34.52 2.15
94 95 2.212652 CTGGCGTGCTTGCTATGATAA 58.787 47.619 0.92 0.00 34.52 1.75
95 96 2.212652 TGGCGTGCTTGCTATGATAAG 58.787 47.619 0.92 0.00 34.52 1.73
96 97 1.532868 GGCGTGCTTGCTATGATAAGG 59.467 52.381 0.92 0.00 34.52 2.69
97 98 2.213499 GCGTGCTTGCTATGATAAGGT 58.787 47.619 0.00 0.00 0.00 3.50
98 99 2.032549 GCGTGCTTGCTATGATAAGGTG 60.033 50.000 0.00 0.00 0.00 4.00
99 100 3.457234 CGTGCTTGCTATGATAAGGTGA 58.543 45.455 0.00 0.00 0.00 4.02
100 101 3.492383 CGTGCTTGCTATGATAAGGTGAG 59.508 47.826 0.00 0.00 0.00 3.51
101 102 3.249559 GTGCTTGCTATGATAAGGTGAGC 59.750 47.826 0.00 0.00 0.00 4.26
102 103 3.118298 TGCTTGCTATGATAAGGTGAGCA 60.118 43.478 0.00 0.00 41.23 4.26
108 109 7.677454 TGCTATGATAAGGTGAGCAATAATG 57.323 36.000 0.00 0.00 40.07 1.90
109 110 7.226441 TGCTATGATAAGGTGAGCAATAATGT 58.774 34.615 0.00 0.00 40.07 2.71
110 111 8.374743 TGCTATGATAAGGTGAGCAATAATGTA 58.625 33.333 0.00 0.00 40.07 2.29
111 112 8.660373 GCTATGATAAGGTGAGCAATAATGTAC 58.340 37.037 0.00 0.00 33.26 2.90
112 113 9.710900 CTATGATAAGGTGAGCAATAATGTACA 57.289 33.333 0.00 0.00 0.00 2.90
113 114 8.978874 ATGATAAGGTGAGCAATAATGTACAA 57.021 30.769 0.00 0.00 0.00 2.41
114 115 8.800370 TGATAAGGTGAGCAATAATGTACAAA 57.200 30.769 0.00 0.00 0.00 2.83
127 128 3.082698 TGTACAAAAGACAGTACGCGT 57.917 42.857 19.17 19.17 42.62 6.01
129 130 1.214367 ACAAAAGACAGTACGCGTGG 58.786 50.000 24.59 13.90 0.00 4.94
138 139 1.850441 CAGTACGCGTGGTTATAGTGC 59.150 52.381 24.59 0.00 0.00 4.40
140 141 3.305623 CGCGTGGTTATAGTGCGG 58.694 61.111 0.00 0.00 44.65 5.69
143 144 0.458889 GCGTGGTTATAGTGCGGTGA 60.459 55.000 0.00 0.00 0.00 4.02
145 146 2.339418 CGTGGTTATAGTGCGGTGAAA 58.661 47.619 0.00 0.00 0.00 2.69
150 151 5.409214 GTGGTTATAGTGCGGTGAAACTAAA 59.591 40.000 0.00 0.00 36.74 1.85
162 163 6.091713 GCGGTGAAACTAAAGAGCTAATGTAA 59.908 38.462 0.00 0.00 36.74 2.41
164 165 8.500773 CGGTGAAACTAAAGAGCTAATGTAAAA 58.499 33.333 0.00 0.00 36.74 1.52
166 167 9.827411 GTGAAACTAAAGAGCTAATGTAAAAGG 57.173 33.333 0.00 0.00 0.00 3.11
197 198 2.800250 AGGGAAAAAGATGTGGCTGAG 58.200 47.619 0.00 0.00 0.00 3.35
228 235 0.668706 CCTCGCATTATCGGCAGGAG 60.669 60.000 0.00 0.00 33.91 3.69
243 250 1.003718 GGAGTTAGTTGCCTGCGGT 60.004 57.895 0.00 0.00 0.00 5.68
259 266 1.143401 GGTAGCGGGACCTAGTTGC 59.857 63.158 0.00 0.00 36.47 4.17
260 267 1.328430 GGTAGCGGGACCTAGTTGCT 61.328 60.000 0.00 0.00 39.59 3.91
261 268 0.535797 GTAGCGGGACCTAGTTGCTT 59.464 55.000 0.00 0.00 37.12 3.91
262 269 0.822164 TAGCGGGACCTAGTTGCTTC 59.178 55.000 0.00 0.00 37.12 3.86
263 270 1.192146 AGCGGGACCTAGTTGCTTCA 61.192 55.000 0.00 0.00 30.27 3.02
264 271 0.741221 GCGGGACCTAGTTGCTTCAG 60.741 60.000 0.00 0.00 0.00 3.02
265 272 0.108138 CGGGACCTAGTTGCTTCAGG 60.108 60.000 0.00 0.00 35.45 3.86
266 273 0.253327 GGGACCTAGTTGCTTCAGGG 59.747 60.000 0.00 0.00 33.48 4.45
268 275 0.393132 GACCTAGTTGCTTCAGGGCC 60.393 60.000 0.00 0.00 30.51 5.80
300 322 2.124011 CAATAATGCATGCACCGTCC 57.876 50.000 25.37 0.00 0.00 4.79
301 323 1.032014 AATAATGCATGCACCGTCCC 58.968 50.000 25.37 0.00 0.00 4.46
302 324 0.106769 ATAATGCATGCACCGTCCCA 60.107 50.000 25.37 3.31 0.00 4.37
303 325 1.029408 TAATGCATGCACCGTCCCAC 61.029 55.000 25.37 0.00 0.00 4.61
304 326 3.565961 ATGCATGCACCGTCCCACA 62.566 57.895 25.37 0.00 0.00 4.17
306 328 2.032528 CATGCACCGTCCCACACT 59.967 61.111 0.00 0.00 0.00 3.55
308 330 4.927782 TGCACCGTCCCACACTGC 62.928 66.667 0.00 0.00 0.00 4.40
309 331 4.927782 GCACCGTCCCACACTGCA 62.928 66.667 0.00 0.00 0.00 4.41
325 359 3.066342 CACTGCAACCTCATCATTCATCC 59.934 47.826 0.00 0.00 0.00 3.51
326 360 3.284617 CTGCAACCTCATCATTCATCCA 58.715 45.455 0.00 0.00 0.00 3.41
327 361 3.697542 CTGCAACCTCATCATTCATCCAA 59.302 43.478 0.00 0.00 0.00 3.53
328 362 3.697542 TGCAACCTCATCATTCATCCAAG 59.302 43.478 0.00 0.00 0.00 3.61
329 363 3.067742 GCAACCTCATCATTCATCCAAGG 59.932 47.826 0.00 0.00 0.00 3.61
330 364 4.529897 CAACCTCATCATTCATCCAAGGA 58.470 43.478 0.00 0.00 0.00 3.36
331 365 4.434545 ACCTCATCATTCATCCAAGGAG 57.565 45.455 0.00 0.00 0.00 3.69
332 366 3.137913 ACCTCATCATTCATCCAAGGAGG 59.862 47.826 0.00 0.00 44.78 4.30
333 367 3.147629 CTCATCATTCATCCAAGGAGGC 58.852 50.000 0.00 0.00 37.29 4.70
340 374 3.334910 TCATCCAAGGAGGCAGATCTA 57.665 47.619 0.00 0.00 37.29 1.98
364 398 3.130160 CCTTTGCTGGCTCCTCGC 61.130 66.667 0.00 0.00 38.13 5.03
365 399 2.046507 CTTTGCTGGCTCCTCGCT 60.047 61.111 0.00 0.00 39.13 4.93
366 400 2.046892 TTTGCTGGCTCCTCGCTC 60.047 61.111 0.00 0.00 39.13 5.03
367 401 2.518973 CTTTGCTGGCTCCTCGCTCT 62.519 60.000 0.00 0.00 39.13 4.09
368 402 2.793160 TTTGCTGGCTCCTCGCTCTG 62.793 60.000 0.00 0.00 39.13 3.35
370 404 3.459965 CTGGCTCCTCGCTCTGCT 61.460 66.667 0.00 0.00 39.13 4.24
371 405 3.429080 CTGGCTCCTCGCTCTGCTC 62.429 68.421 0.00 0.00 39.13 4.26
374 408 2.413963 GCTCCTCGCTCTGCTCAGA 61.414 63.158 0.00 0.00 35.85 3.27
375 409 1.943116 GCTCCTCGCTCTGCTCAGAA 61.943 60.000 0.93 0.00 36.94 3.02
376 410 0.529833 CTCCTCGCTCTGCTCAGAAA 59.470 55.000 0.93 0.00 36.94 2.52
378 412 1.075425 CCTCGCTCTGCTCAGAAACG 61.075 60.000 12.87 12.87 36.94 3.60
379 413 0.109551 CTCGCTCTGCTCAGAAACGA 60.110 55.000 17.82 17.82 41.07 3.85
387 421 1.975327 CTCAGAAACGAGCTGGGGA 59.025 57.895 0.00 0.00 34.20 4.81
403 437 3.965888 GGAACCTCAAGCTCACCAT 57.034 52.632 0.00 0.00 0.00 3.55
404 438 1.743996 GGAACCTCAAGCTCACCATC 58.256 55.000 0.00 0.00 0.00 3.51
405 439 1.003580 GGAACCTCAAGCTCACCATCA 59.996 52.381 0.00 0.00 0.00 3.07
407 441 3.350833 GAACCTCAAGCTCACCATCATT 58.649 45.455 0.00 0.00 0.00 2.57
408 442 2.719739 ACCTCAAGCTCACCATCATTG 58.280 47.619 0.00 0.00 0.00 2.82
409 443 1.404391 CCTCAAGCTCACCATCATTGC 59.596 52.381 0.00 0.00 0.00 3.56
410 444 2.366533 CTCAAGCTCACCATCATTGCT 58.633 47.619 0.00 0.00 35.30 3.91
411 445 2.355132 CTCAAGCTCACCATCATTGCTC 59.645 50.000 0.00 0.00 33.10 4.26
412 446 1.404391 CAAGCTCACCATCATTGCTCC 59.596 52.381 0.00 0.00 33.10 4.70
413 447 0.917533 AGCTCACCATCATTGCTCCT 59.082 50.000 0.00 0.00 0.00 3.69
414 448 1.022735 GCTCACCATCATTGCTCCTG 58.977 55.000 0.00 0.00 0.00 3.86
415 449 1.022735 CTCACCATCATTGCTCCTGC 58.977 55.000 0.00 0.00 40.20 4.85
416 450 0.622136 TCACCATCATTGCTCCTGCT 59.378 50.000 0.00 0.00 40.48 4.24
417 451 1.022735 CACCATCATTGCTCCTGCTC 58.977 55.000 0.00 0.00 40.48 4.26
418 452 0.106819 ACCATCATTGCTCCTGCTCC 60.107 55.000 0.00 0.00 40.48 4.70
419 453 0.106868 CCATCATTGCTCCTGCTCCA 60.107 55.000 0.00 0.00 40.48 3.86
420 454 1.022735 CATCATTGCTCCTGCTCCAC 58.977 55.000 0.00 0.00 40.48 4.02
421 455 0.106819 ATCATTGCTCCTGCTCCACC 60.107 55.000 0.00 0.00 40.48 4.61
422 456 1.001764 CATTGCTCCTGCTCCACCA 60.002 57.895 0.00 0.00 40.48 4.17
423 457 0.609957 CATTGCTCCTGCTCCACCAA 60.610 55.000 0.00 0.00 40.48 3.67
424 458 0.112995 ATTGCTCCTGCTCCACCAAA 59.887 50.000 0.00 0.00 40.48 3.28
425 459 0.538057 TTGCTCCTGCTCCACCAAAG 60.538 55.000 0.00 0.00 40.48 2.77
426 460 1.676967 GCTCCTGCTCCACCAAAGG 60.677 63.158 0.00 0.00 36.03 3.11
427 461 1.676967 CTCCTGCTCCACCAAAGGC 60.677 63.158 0.00 0.00 0.00 4.35
428 462 2.677875 CCTGCTCCACCAAAGGCC 60.678 66.667 0.00 0.00 0.00 5.19
429 463 2.115910 CTGCTCCACCAAAGGCCA 59.884 61.111 5.01 0.00 0.00 5.36
430 464 2.203480 TGCTCCACCAAAGGCCAC 60.203 61.111 5.01 0.00 0.00 5.01
455 489 0.676466 CCAACCATGGCGCTTGAGTA 60.676 55.000 13.04 0.00 40.58 2.59
456 490 0.729116 CAACCATGGCGCTTGAGTAG 59.271 55.000 13.04 0.00 0.00 2.57
457 491 0.392998 AACCATGGCGCTTGAGTAGG 60.393 55.000 13.04 2.64 0.00 3.18
458 492 2.182842 CCATGGCGCTTGAGTAGGC 61.183 63.158 7.64 0.00 0.00 3.93
459 493 2.182842 CATGGCGCTTGAGTAGGCC 61.183 63.158 7.64 0.00 39.38 5.19
460 494 3.740128 ATGGCGCTTGAGTAGGCCG 62.740 63.158 7.64 0.00 40.87 6.13
461 495 4.452733 GGCGCTTGAGTAGGCCGT 62.453 66.667 7.64 0.00 32.77 5.68
462 496 2.493030 GCGCTTGAGTAGGCCGTA 59.507 61.111 0.00 0.00 0.00 4.02
463 497 1.877165 GCGCTTGAGTAGGCCGTAC 60.877 63.158 0.00 0.19 0.00 3.67
464 498 1.509463 CGCTTGAGTAGGCCGTACA 59.491 57.895 12.89 3.62 33.55 2.90
465 499 0.102481 CGCTTGAGTAGGCCGTACAT 59.898 55.000 12.89 0.00 33.55 2.29
466 500 1.854227 GCTTGAGTAGGCCGTACATC 58.146 55.000 12.89 8.80 33.55 3.06
467 501 1.538419 GCTTGAGTAGGCCGTACATCC 60.538 57.143 12.89 0.00 33.55 3.51
468 502 1.068741 CTTGAGTAGGCCGTACATCCC 59.931 57.143 12.89 0.00 33.55 3.85
469 503 0.260816 TGAGTAGGCCGTACATCCCT 59.739 55.000 12.89 0.00 33.55 4.20
470 504 0.960286 GAGTAGGCCGTACATCCCTC 59.040 60.000 12.89 1.64 33.55 4.30
471 505 0.822532 AGTAGGCCGTACATCCCTCG 60.823 60.000 12.89 0.00 33.55 4.63
472 506 2.198287 TAGGCCGTACATCCCTCGC 61.198 63.158 0.00 0.00 0.00 5.03
473 507 2.635787 TAGGCCGTACATCCCTCGCT 62.636 60.000 0.00 0.00 0.00 4.93
474 508 2.499685 GCCGTACATCCCTCGCTT 59.500 61.111 0.00 0.00 0.00 4.68
475 509 1.883084 GCCGTACATCCCTCGCTTG 60.883 63.158 0.00 0.00 0.00 4.01
497 531 0.457509 CGTCTCGTCTCAGCAAGCAT 60.458 55.000 0.00 0.00 0.00 3.79
498 532 0.997932 GTCTCGTCTCAGCAAGCATG 59.002 55.000 0.00 0.00 0.00 4.06
535 569 0.541764 AAGGGCGAAATTTGGAGGCA 60.542 50.000 4.16 0.00 0.00 4.75
542 576 0.883833 AAATTTGGAGGCAGTCGCTG 59.116 50.000 0.00 2.92 38.60 5.18
543 577 0.036732 AATTTGGAGGCAGTCGCTGA 59.963 50.000 10.46 0.00 38.60 4.26
544 578 0.036732 ATTTGGAGGCAGTCGCTGAA 59.963 50.000 10.46 0.00 38.60 3.02
545 579 0.603707 TTTGGAGGCAGTCGCTGAAG 60.604 55.000 10.46 0.00 38.60 3.02
546 580 1.471829 TTGGAGGCAGTCGCTGAAGA 61.472 55.000 10.46 0.00 38.60 2.87
547 581 1.153667 GGAGGCAGTCGCTGAAGAG 60.154 63.158 10.46 0.00 38.60 2.85
548 582 1.809209 GAGGCAGTCGCTGAAGAGC 60.809 63.158 10.46 0.00 42.37 4.09
549 583 2.817396 GGCAGTCGCTGAAGAGCC 60.817 66.667 10.46 0.00 42.91 4.70
550 584 2.264166 GCAGTCGCTGAAGAGCCT 59.736 61.111 10.46 0.00 42.91 4.58
551 585 1.513158 GCAGTCGCTGAAGAGCCTA 59.487 57.895 10.46 0.00 42.91 3.93
552 586 0.804156 GCAGTCGCTGAAGAGCCTAC 60.804 60.000 10.46 0.00 42.91 3.18
553 587 0.179124 CAGTCGCTGAAGAGCCTACC 60.179 60.000 1.18 0.00 42.91 3.18
554 588 1.226717 GTCGCTGAAGAGCCTACCG 60.227 63.158 0.00 0.00 42.91 4.02
555 589 2.105128 CGCTGAAGAGCCTACCGG 59.895 66.667 0.00 0.00 42.91 5.28
556 590 2.711922 CGCTGAAGAGCCTACCGGT 61.712 63.158 13.98 13.98 42.91 5.28
557 591 1.153549 GCTGAAGAGCCTACCGGTG 60.154 63.158 19.93 7.24 39.57 4.94
558 592 1.153549 CTGAAGAGCCTACCGGTGC 60.154 63.158 19.93 13.82 0.00 5.01
581 615 1.078759 CGACGTGCTAGCTTCTTGGG 61.079 60.000 17.23 0.00 0.00 4.12
591 625 1.995542 AGCTTCTTGGGGATCTTTCCA 59.004 47.619 0.00 0.00 44.60 3.53
592 626 2.379907 AGCTTCTTGGGGATCTTTCCAA 59.620 45.455 12.60 12.60 44.60 3.53
593 627 3.165071 GCTTCTTGGGGATCTTTCCAAA 58.835 45.455 13.65 0.00 44.60 3.28
625 659 2.818169 TTGGAGCTGACGGCAAGGT 61.818 57.895 9.39 0.00 44.79 3.50
628 662 1.598130 GAGCTGACGGCAAGGTTGT 60.598 57.895 9.39 0.00 44.79 3.32
636 670 1.068474 CGGCAAGGTTGTCTTACTCG 58.932 55.000 0.00 0.00 33.68 4.18
645 679 2.860735 GTTGTCTTACTCGGCTATGCTG 59.139 50.000 0.00 0.00 36.06 4.41
652 686 1.414181 ACTCGGCTATGCTGCTTGTAT 59.586 47.619 0.00 0.00 34.49 2.29
665 699 7.827819 TGCTGCTTGTATTAAGTAAGTACTG 57.172 36.000 0.00 0.00 36.50 2.74
666 700 6.312918 TGCTGCTTGTATTAAGTAAGTACTGC 59.687 38.462 0.00 0.00 36.50 4.40
669 703 7.391620 TGCTTGTATTAAGTAAGTACTGCCTT 58.608 34.615 0.00 4.34 36.50 4.35
670 704 7.548075 TGCTTGTATTAAGTAAGTACTGCCTTC 59.452 37.037 9.83 0.00 36.50 3.46
673 707 9.595823 TTGTATTAAGTAAGTACTGCCTTCATC 57.404 33.333 9.83 3.10 36.50 2.92
674 708 8.202137 TGTATTAAGTAAGTACTGCCTTCATCC 58.798 37.037 9.83 0.00 36.50 3.51
675 709 4.489306 AAGTAAGTACTGCCTTCATCCC 57.511 45.455 0.00 0.00 36.50 3.85
676 710 2.431057 AGTAAGTACTGCCTTCATCCCG 59.569 50.000 0.00 0.00 34.72 5.14
679 713 2.119495 AGTACTGCCTTCATCCCGAAT 58.881 47.619 0.00 0.00 31.69 3.34
683 717 4.170468 ACTGCCTTCATCCCGAATTATT 57.830 40.909 0.00 0.00 31.69 1.40
684 718 4.536765 ACTGCCTTCATCCCGAATTATTT 58.463 39.130 0.00 0.00 31.69 1.40
686 720 4.277476 TGCCTTCATCCCGAATTATTTGT 58.723 39.130 0.00 0.00 31.69 2.83
688 722 5.186797 TGCCTTCATCCCGAATTATTTGTTT 59.813 36.000 0.00 0.00 31.69 2.83
690 724 7.093727 TGCCTTCATCCCGAATTATTTGTTTTA 60.094 33.333 0.00 0.00 31.69 1.52
692 726 8.247562 CCTTCATCCCGAATTATTTGTTTTACA 58.752 33.333 0.00 0.00 31.69 2.41
693 727 9.801873 CTTCATCCCGAATTATTTGTTTTACAT 57.198 29.630 0.00 0.00 31.69 2.29
697 731 9.936759 ATCCCGAATTATTTGTTTTACATTTGT 57.063 25.926 0.00 0.00 0.00 2.83
698 732 9.765795 TCCCGAATTATTTGTTTTACATTTGTT 57.234 25.926 0.00 0.00 0.00 2.83
699 733 9.804547 CCCGAATTATTTGTTTTACATTTGTTG 57.195 29.630 0.00 0.00 0.00 3.33
743 777 9.569122 ACATGTTTTAGTGTTAGATACCTTTGT 57.431 29.630 0.00 0.00 0.00 2.83
768 802 9.120422 GTATTTAAACACAACTAATTTGGGACG 57.880 33.333 0.00 0.00 41.78 4.79
773 807 2.374170 ACAACTAATTTGGGACGGAGGT 59.626 45.455 0.00 0.00 39.84 3.85
775 809 4.041938 ACAACTAATTTGGGACGGAGGTAA 59.958 41.667 0.00 0.00 39.84 2.85
786 820 4.377897 GGACGGAGGTAATACCATCAAAG 58.622 47.826 12.54 4.98 41.95 2.77
803 837 1.586154 AAGCCACCGATTTGCTTCCG 61.586 55.000 0.00 0.00 41.23 4.30
804 838 2.485122 CCACCGATTTGCTTCCGC 59.515 61.111 0.00 0.00 0.00 5.54
806 840 1.586154 CCACCGATTTGCTTCCGCTT 61.586 55.000 0.00 0.00 36.97 4.68
808 842 0.605319 ACCGATTTGCTTCCGCTTGA 60.605 50.000 0.00 0.00 36.97 3.02
811 845 1.553308 GATTTGCTTCCGCTTGATGC 58.447 50.000 4.62 4.62 42.82 3.91
814 848 4.779819 GCTTCCGCTTGATGCAAG 57.220 55.556 0.00 2.91 43.57 4.01
816 850 0.737219 GCTTCCGCTTGATGCAAGAT 59.263 50.000 11.08 0.00 43.42 2.40
818 852 1.065102 CTTCCGCTTGATGCAAGATGG 59.935 52.381 11.08 10.87 43.42 3.51
819 853 0.749091 TCCGCTTGATGCAAGATGGG 60.749 55.000 11.08 8.25 43.42 4.00
820 854 1.731433 CCGCTTGATGCAAGATGGGG 61.731 60.000 11.08 0.00 43.42 4.96
821 855 0.749091 CGCTTGATGCAAGATGGGGA 60.749 55.000 11.08 0.00 43.42 4.81
822 856 1.477553 GCTTGATGCAAGATGGGGAA 58.522 50.000 11.08 0.00 43.42 3.97
823 857 2.037144 GCTTGATGCAAGATGGGGAAT 58.963 47.619 11.08 0.00 43.42 3.01
824 858 2.223971 GCTTGATGCAAGATGGGGAATG 60.224 50.000 11.08 0.00 43.42 2.67
825 859 3.293337 CTTGATGCAAGATGGGGAATGA 58.707 45.455 1.01 0.00 43.42 2.57
826 860 3.385314 TGATGCAAGATGGGGAATGAA 57.615 42.857 0.00 0.00 0.00 2.57
827 861 3.710724 TGATGCAAGATGGGGAATGAAA 58.289 40.909 0.00 0.00 0.00 2.69
828 862 4.291792 TGATGCAAGATGGGGAATGAAAT 58.708 39.130 0.00 0.00 0.00 2.17
829 863 4.717778 TGATGCAAGATGGGGAATGAAATT 59.282 37.500 0.00 0.00 40.93 1.82
830 864 4.475051 TGCAAGATGGGGAATGAAATTG 57.525 40.909 0.00 0.00 36.07 2.32
831 865 3.198200 TGCAAGATGGGGAATGAAATTGG 59.802 43.478 0.00 0.00 36.07 3.16
832 866 3.451902 GCAAGATGGGGAATGAAATTGGA 59.548 43.478 0.00 0.00 36.07 3.53
833 867 4.442472 GCAAGATGGGGAATGAAATTGGAG 60.442 45.833 0.00 0.00 36.07 3.86
834 868 4.614967 AGATGGGGAATGAAATTGGAGT 57.385 40.909 0.00 0.00 36.07 3.85
835 869 4.284178 AGATGGGGAATGAAATTGGAGTG 58.716 43.478 0.00 0.00 36.07 3.51
836 870 2.818921 TGGGGAATGAAATTGGAGTGG 58.181 47.619 0.00 0.00 36.07 4.00
837 871 2.381618 TGGGGAATGAAATTGGAGTGGA 59.618 45.455 0.00 0.00 36.07 4.02
838 872 2.760650 GGGGAATGAAATTGGAGTGGAC 59.239 50.000 0.00 0.00 36.07 4.02
839 873 2.423538 GGGAATGAAATTGGAGTGGACG 59.576 50.000 0.00 0.00 36.07 4.79
840 874 2.159379 GGAATGAAATTGGAGTGGACGC 60.159 50.000 0.00 0.00 36.07 5.19
841 875 2.198827 ATGAAATTGGAGTGGACGCA 57.801 45.000 0.00 0.00 0.00 5.24
842 876 2.198827 TGAAATTGGAGTGGACGCAT 57.801 45.000 0.00 0.00 0.00 4.73
843 877 2.513753 TGAAATTGGAGTGGACGCATT 58.486 42.857 0.00 0.00 0.00 3.56
844 878 2.890311 TGAAATTGGAGTGGACGCATTT 59.110 40.909 0.00 0.00 0.00 2.32
845 879 3.320541 TGAAATTGGAGTGGACGCATTTT 59.679 39.130 0.00 0.00 0.00 1.82
874 908 6.001460 CACCTGTAGATTTCCTGTAAAACCA 58.999 40.000 0.00 0.00 0.00 3.67
882 916 0.451783 CCTGTAAAACCAGCGATGGC 59.548 55.000 21.97 3.04 40.37 4.40
886 920 0.800012 TAAAACCAGCGATGGCGAAC 59.200 50.000 21.97 0.00 46.35 3.95
887 921 1.862602 AAAACCAGCGATGGCGAACC 61.863 55.000 21.97 0.00 46.35 3.62
955 989 4.334481 CAGTCGGTGTTACAGGTTTTCTTT 59.666 41.667 0.00 0.00 0.00 2.52
956 990 5.524646 CAGTCGGTGTTACAGGTTTTCTTTA 59.475 40.000 0.00 0.00 0.00 1.85
992 1026 6.441093 ACATTAATTGACAGCGAACATCAT 57.559 33.333 0.00 0.00 0.00 2.45
1014 1048 2.347490 GCCATGGACGTGGTGACT 59.653 61.111 18.40 0.00 41.47 3.41
1025 1059 2.152729 TGGTGACTGGTGCCATGGA 61.153 57.895 18.40 0.00 0.00 3.41
1035 1069 1.616994 GGTGCCATGGAAAGCCTACTT 60.617 52.381 18.40 0.00 37.90 2.24
1059 1093 2.345244 CTGGGTGAGCTGCTCGTT 59.655 61.111 23.35 0.00 32.35 3.85
1069 1103 1.218316 CTGCTCGTTGGGGAGTACC 59.782 63.158 0.00 0.00 36.41 3.34
1070 1104 2.183555 GCTCGTTGGGGAGTACCG 59.816 66.667 0.00 0.00 41.60 4.02
1090 1124 0.895530 CCTACAGAAGGGCGTGAAGA 59.104 55.000 0.00 0.00 42.32 2.87
1095 1129 2.039084 ACAGAAGGGCGTGAAGAAAGAT 59.961 45.455 0.00 0.00 0.00 2.40
1152 1186 1.168714 CTGCTCTTACAAAGGTGGCC 58.831 55.000 0.00 0.00 0.00 5.36
1245 1279 1.728971 GCAGAGGATGTCGTTGACAAG 59.271 52.381 3.47 0.00 45.96 3.16
1256 1290 1.597663 CGTTGACAAGTTCCTGGTGTC 59.402 52.381 7.92 7.92 41.66 3.67
1257 1291 2.741878 CGTTGACAAGTTCCTGGTGTCT 60.742 50.000 14.08 0.78 41.80 3.41
1258 1292 3.491964 CGTTGACAAGTTCCTGGTGTCTA 60.492 47.826 14.08 6.11 41.80 2.59
1269 1309 2.489985 CCTGGTGTCTATCGAGGGATCT 60.490 54.545 0.00 0.00 34.00 2.75
1270 1310 3.244946 CCTGGTGTCTATCGAGGGATCTA 60.245 52.174 0.00 0.00 34.00 1.98
1287 1327 5.764131 GGATCTAATCCTACAGTCAACTCG 58.236 45.833 0.00 0.00 46.19 4.18
1289 1329 6.293735 GGATCTAATCCTACAGTCAACTCGAG 60.294 46.154 11.84 11.84 46.19 4.04
1317 1357 5.041191 TCAAAGGGCTAATGGAGAAGATC 57.959 43.478 0.00 0.00 0.00 2.75
1381 1421 4.430007 CAATGCAATCAAGGACATCAAGG 58.570 43.478 0.00 0.00 0.00 3.61
1477 1517 7.172532 GCATAAACAATACCATTGATCCTCGTA 59.827 37.037 5.92 0.00 0.00 3.43
1506 1546 7.577303 TGGCTTTATACAAGGATCAGAAAGAT 58.423 34.615 0.00 0.00 40.48 2.40
1528 1568 0.040514 CGTTGGCATTGAAGACGCAA 60.041 50.000 0.00 0.00 0.00 4.85
1534 1574 0.804989 CATTGAAGACGCAAGGGACC 59.195 55.000 0.00 0.00 46.39 4.46
1543 1583 1.745489 GCAAGGGACCAGCTAACCG 60.745 63.158 0.00 0.00 0.00 4.44
1563 1603 3.785486 CGAGAGGCTTACACATGATGAA 58.215 45.455 0.00 0.00 0.00 2.57
1566 1606 3.776969 AGAGGCTTACACATGATGAAGGA 59.223 43.478 0.00 0.00 0.00 3.36
1570 1610 5.604231 AGGCTTACACATGATGAAGGAGATA 59.396 40.000 0.00 0.00 0.00 1.98
1571 1611 5.698545 GGCTTACACATGATGAAGGAGATAC 59.301 44.000 0.00 0.00 0.00 2.24
1583 1623 3.460857 AGGAGATACGTCAAATCAGCC 57.539 47.619 0.00 0.00 0.00 4.85
1588 1646 0.459585 TACGTCAAATCAGCCGCTCC 60.460 55.000 0.00 0.00 0.00 4.70
1611 1669 5.221541 CCAGATAGTCTCTATTGTTGGACCC 60.222 48.000 0.00 0.00 31.13 4.46
1734 1792 4.997395 GTGAGCAAAGTTCTCAAGGACATA 59.003 41.667 0.00 0.00 41.66 2.29
1758 1816 2.779506 CTGGAACTGGAACTGGGTAAC 58.220 52.381 0.00 0.00 0.00 2.50
1761 1819 2.638363 GGAACTGGAACTGGGTAACTCT 59.362 50.000 0.00 0.00 0.00 3.24
1762 1820 3.836562 GGAACTGGAACTGGGTAACTCTA 59.163 47.826 0.00 0.00 0.00 2.43
1763 1821 4.470304 GGAACTGGAACTGGGTAACTCTAT 59.530 45.833 0.00 0.00 0.00 1.98
1764 1822 5.420409 GAACTGGAACTGGGTAACTCTATG 58.580 45.833 0.00 0.00 0.00 2.23
1778 1839 7.363094 GGGTAACTCTATGAGTGATATAGCCAC 60.363 44.444 15.02 0.00 42.59 5.01
1782 1843 8.885693 ACTCTATGAGTGATATAGCCACATTA 57.114 34.615 9.75 0.00 41.76 1.90
1795 1856 7.798596 ATAGCCACATTAGATGAAAGACAAG 57.201 36.000 0.00 0.00 0.00 3.16
1825 1886 5.715070 ACAAACTCCGAGATCTACTTCAAG 58.285 41.667 1.33 0.00 0.00 3.02
1850 1916 1.221021 GGTTCGGACCATCCACCTC 59.779 63.158 8.43 0.00 45.77 3.85
1852 1918 0.391263 GTTCGGACCATCCACCTCAC 60.391 60.000 0.00 0.00 35.91 3.51
1861 1927 6.572509 CGGACCATCCACCTCACTTTATATAG 60.573 46.154 0.00 0.00 35.91 1.31
1862 1928 6.270231 GGACCATCCACCTCACTTTATATAGT 59.730 42.308 0.00 0.00 36.28 2.12
1863 1929 7.202102 GGACCATCCACCTCACTTTATATAGTT 60.202 40.741 0.00 0.00 36.28 2.24
1864 1930 8.792830 ACCATCCACCTCACTTTATATAGTTA 57.207 34.615 0.00 0.00 0.00 2.24
1892 1958 7.750229 AACAATGACACAATTATCTCAGTGT 57.250 32.000 0.00 0.00 46.85 3.55
1894 1960 8.256611 ACAATGACACAATTATCTCAGTGTAC 57.743 34.615 8.80 0.00 44.48 2.90
1895 1961 7.334421 ACAATGACACAATTATCTCAGTGTACC 59.666 37.037 8.80 0.00 44.48 3.34
1964 2034 0.953471 TGACACAATGTGGCGCTACC 60.953 55.000 21.89 4.26 45.98 3.18
2014 2094 7.928706 GGAACTGACAATTGCATATCTACTACT 59.071 37.037 5.05 0.00 0.00 2.57
2015 2095 8.879342 AACTGACAATTGCATATCTACTACTC 57.121 34.615 5.05 0.00 0.00 2.59
2016 2096 7.437748 ACTGACAATTGCATATCTACTACTCC 58.562 38.462 5.05 0.00 0.00 3.85
2017 2097 6.759272 TGACAATTGCATATCTACTACTCCC 58.241 40.000 5.05 0.00 0.00 4.30
2018 2098 6.326323 TGACAATTGCATATCTACTACTCCCA 59.674 38.462 5.05 0.00 0.00 4.37
2019 2099 6.763355 ACAATTGCATATCTACTACTCCCAG 58.237 40.000 5.05 0.00 0.00 4.45
2020 2100 6.554982 ACAATTGCATATCTACTACTCCCAGA 59.445 38.462 5.05 0.00 0.00 3.86
2021 2101 6.849085 ATTGCATATCTACTACTCCCAGAG 57.151 41.667 0.00 0.00 35.52 3.35
2022 2102 5.326283 TGCATATCTACTACTCCCAGAGT 57.674 43.478 2.38 2.38 45.54 3.24
2023 2103 5.317808 TGCATATCTACTACTCCCAGAGTC 58.682 45.833 0.00 0.00 42.40 3.36
2024 2104 5.073827 TGCATATCTACTACTCCCAGAGTCT 59.926 44.000 0.00 0.00 42.40 3.24
2025 2105 6.272558 TGCATATCTACTACTCCCAGAGTCTA 59.727 42.308 0.00 0.00 42.40 2.59
2026 2106 6.821665 GCATATCTACTACTCCCAGAGTCTAG 59.178 46.154 0.00 2.47 42.40 2.43
2027 2107 7.528205 GCATATCTACTACTCCCAGAGTCTAGT 60.528 44.444 0.00 3.25 42.40 2.57
2028 2108 9.038072 CATATCTACTACTCCCAGAGTCTAGTA 57.962 40.741 0.00 4.22 42.40 1.82
2029 2109 6.982160 TCTACTACTCCCAGAGTCTAGTAG 57.018 45.833 20.18 20.18 44.66 2.57
2037 2117 6.726764 ACTCCCAGAGTCTAGTAGTCAATTTT 59.273 38.462 0.00 0.00 38.71 1.82
2038 2118 6.936279 TCCCAGAGTCTAGTAGTCAATTTTG 58.064 40.000 0.00 0.00 0.00 2.44
2039 2121 5.582665 CCCAGAGTCTAGTAGTCAATTTTGC 59.417 44.000 0.00 0.00 0.00 3.68
2040 2122 6.402222 CCAGAGTCTAGTAGTCAATTTTGCT 58.598 40.000 0.00 0.00 0.00 3.91
2041 2123 7.363880 CCCAGAGTCTAGTAGTCAATTTTGCTA 60.364 40.741 0.00 0.00 0.00 3.49
2042 2124 7.704472 CCAGAGTCTAGTAGTCAATTTTGCTAG 59.296 40.741 0.00 0.00 0.00 3.42
2045 2127 9.724839 GAGTCTAGTAGTCAATTTTGCTAGTAG 57.275 37.037 18.47 18.47 39.25 2.57
2092 2175 1.134877 GTCAGCTAGTGCATCTCAGCA 60.135 52.381 12.40 0.00 43.35 4.41
2195 2278 5.902613 TTCAATTTGGACAGCCTATTCAG 57.097 39.130 0.00 0.00 34.31 3.02
2206 2289 4.100189 ACAGCCTATTCAGTCCTGATGTAC 59.900 45.833 0.00 0.00 39.64 2.90
2211 2294 7.125811 AGCCTATTCAGTCCTGATGTACTTTTA 59.874 37.037 0.00 0.00 39.64 1.52
2217 2302 8.603242 TCAGTCCTGATGTACTTTTAGAAAAC 57.397 34.615 0.00 0.00 34.14 2.43
2254 2341 6.798427 TCATGTTCTCCTACTTCTTGCTAT 57.202 37.500 0.00 0.00 0.00 2.97
2262 2349 6.384015 TCTCCTACTTCTTGCTATCATTTGGA 59.616 38.462 0.00 0.00 0.00 3.53
2264 2351 7.220030 TCCTACTTCTTGCTATCATTTGGATC 58.780 38.462 0.00 0.00 37.44 3.36
2267 2354 5.525378 ACTTCTTGCTATCATTTGGATCGTC 59.475 40.000 0.00 0.00 37.44 4.20
2272 2359 4.571984 TGCTATCATTTGGATCGTCAACAG 59.428 41.667 0.00 0.00 37.44 3.16
2274 2361 3.057969 TCATTTGGATCGTCAACAGCT 57.942 42.857 0.00 0.00 0.00 4.24
2279 2366 1.204704 TGGATCGTCAACAGCTACCAG 59.795 52.381 0.00 0.00 0.00 4.00
2280 2367 1.476891 GGATCGTCAACAGCTACCAGA 59.523 52.381 0.00 0.00 0.00 3.86
2281 2368 2.531206 GATCGTCAACAGCTACCAGAC 58.469 52.381 0.00 0.00 0.00 3.51
2289 2376 4.223700 TCAACAGCTACCAGACATTCTCAT 59.776 41.667 0.00 0.00 0.00 2.90
2290 2377 5.422012 TCAACAGCTACCAGACATTCTCATA 59.578 40.000 0.00 0.00 0.00 2.15
2291 2378 6.098838 TCAACAGCTACCAGACATTCTCATAT 59.901 38.462 0.00 0.00 0.00 1.78
2292 2379 7.287696 TCAACAGCTACCAGACATTCTCATATA 59.712 37.037 0.00 0.00 0.00 0.86
2293 2380 7.789202 ACAGCTACCAGACATTCTCATATAT 57.211 36.000 0.00 0.00 0.00 0.86
2342 2429 5.287035 GCAAGCTTCACATGCAAAACTATAC 59.713 40.000 0.00 0.00 39.81 1.47
2410 2497 1.263484 CTCAGTCGGATTCATGCATGC 59.737 52.381 22.25 11.82 0.00 4.06
2415 2502 3.884693 AGTCGGATTCATGCATGCATTTA 59.115 39.130 30.32 20.44 33.90 1.40
2420 2507 5.463286 GGATTCATGCATGCATTTATCGAA 58.537 37.500 30.32 26.72 33.90 3.71
2477 2569 7.698836 TGTAGATTGAATGATGACATGTACG 57.301 36.000 0.00 0.00 36.79 3.67
2483 2575 4.994217 TGAATGATGACATGTACGTGTGTT 59.006 37.500 25.08 11.83 36.79 3.32
2514 2606 1.636148 AGTGGTTGGCATGCATCTTT 58.364 45.000 21.36 0.00 0.00 2.52
2526 2618 6.602803 TGGCATGCATCTTTGTTCTTCTAATA 59.397 34.615 21.36 0.00 0.00 0.98
2571 2672 2.731572 ACTAATGCATGGCTCTTGCTT 58.268 42.857 0.00 5.56 40.77 3.91
2591 2693 6.237901 TGCTTTGTCATGTGATAGGTACTTT 58.762 36.000 0.00 0.00 41.75 2.66
2594 2696 8.893727 GCTTTGTCATGTGATAGGTACTTTATT 58.106 33.333 0.00 0.00 41.75 1.40
2695 2797 5.967088 AGTAATCACAACTACTCGCATTCT 58.033 37.500 0.00 0.00 0.00 2.40
2705 2807 2.498167 ACTCGCATTCTTGAAGTTGCT 58.502 42.857 16.40 1.29 32.97 3.91
2711 2813 3.744426 GCATTCTTGAAGTTGCTGCAAAT 59.256 39.130 17.80 13.79 27.38 2.32
2717 2819 0.243636 AAGTTGCTGCAAATACCGGC 59.756 50.000 17.80 2.61 35.17 6.13
2718 2820 0.893270 AGTTGCTGCAAATACCGGCA 60.893 50.000 17.80 0.00 42.44 5.69
2738 2840 3.307242 GCAATGTCTACAAGCTAGAACCG 59.693 47.826 0.00 0.00 0.00 4.44
2746 2848 2.003301 CAAGCTAGAACCGCTTTCTCC 58.997 52.381 0.00 0.00 44.76 3.71
2881 2983 2.124860 GTAACTGCCGGGGCGAAT 60.125 61.111 2.18 0.00 45.51 3.34
3365 3467 2.738480 CGACGGGAGGAACCACAA 59.262 61.111 0.00 0.00 41.20 3.33
3366 3468 1.070105 CGACGGGAGGAACCACAAA 59.930 57.895 0.00 0.00 41.20 2.83
3367 3469 0.321298 CGACGGGAGGAACCACAAAT 60.321 55.000 0.00 0.00 41.20 2.32
3368 3470 1.165270 GACGGGAGGAACCACAAATG 58.835 55.000 0.00 0.00 41.20 2.32
3369 3471 0.476771 ACGGGAGGAACCACAAATGT 59.523 50.000 0.00 0.00 41.20 2.71
3377 3479 4.344104 AGGAACCACAAATGTCCTTATGG 58.656 43.478 0.00 0.00 32.05 2.74
3463 3565 4.985413 TGCAATAGCTAGTTTGTTGCATC 58.015 39.130 21.87 1.84 46.98 3.91
3497 3599 5.601313 TGGAGGATTGGTCTAAGGTATACAC 59.399 44.000 5.01 0.00 0.00 2.90
3514 3616 7.897864 GGTATACACCTCTATTAGTTCTGCAT 58.102 38.462 5.01 0.00 42.11 3.96
3515 3617 8.368668 GGTATACACCTCTATTAGTTCTGCATT 58.631 37.037 5.01 0.00 42.11 3.56
3534 3636 9.881649 TCTGCATTTGGAGATAATACAGATATC 57.118 33.333 0.00 0.00 37.60 1.63
3617 3719 5.280654 TGTCTGTTGCATCTGAGCATATA 57.719 39.130 4.74 0.00 45.19 0.86
3627 3729 6.156429 TGCATCTGAGCATATATCCAGAAGAT 59.844 38.462 11.01 2.51 40.11 2.40
3628 3730 7.343833 TGCATCTGAGCATATATCCAGAAGATA 59.656 37.037 11.01 0.00 39.61 1.98
3645 3747 9.170734 CCAGAAGATACTTTGATCATGAAAGAA 57.829 33.333 11.68 1.22 34.94 2.52
3696 3798 2.116983 TTGTCAGTGAGGAGCCAGGC 62.117 60.000 1.84 1.84 0.00 4.85
3697 3799 2.121385 TCAGTGAGGAGCCAGGCT 59.879 61.111 16.12 16.12 43.88 4.58
3699 3801 1.130054 TCAGTGAGGAGCCAGGCTTT 61.130 55.000 17.46 7.33 39.88 3.51
3754 3856 7.664082 AATGATCTCGTAAATAGAAGCATGG 57.336 36.000 0.00 0.00 0.00 3.66
3756 3858 6.582636 TGATCTCGTAAATAGAAGCATGGTT 58.417 36.000 10.50 10.50 0.00 3.67
3779 3881 2.079925 GCCTGTAGAGCACAAAGAAGG 58.920 52.381 0.00 0.00 36.48 3.46
3780 3882 2.704572 CCTGTAGAGCACAAAGAAGGG 58.295 52.381 0.00 0.00 36.48 3.95
3781 3883 2.303022 CCTGTAGAGCACAAAGAAGGGA 59.697 50.000 0.00 0.00 36.48 4.20
3782 3884 3.330267 CTGTAGAGCACAAAGAAGGGAC 58.670 50.000 0.00 0.00 36.48 4.46
3783 3885 2.288825 TGTAGAGCACAAAGAAGGGACG 60.289 50.000 0.00 0.00 32.95 4.79
3784 3886 0.035458 AGAGCACAAAGAAGGGACGG 59.965 55.000 0.00 0.00 0.00 4.79
3785 3887 0.955919 GAGCACAAAGAAGGGACGGG 60.956 60.000 0.00 0.00 0.00 5.28
3786 3888 2.626780 GCACAAAGAAGGGACGGGC 61.627 63.158 0.00 0.00 0.00 6.13
3787 3889 1.228124 CACAAAGAAGGGACGGGCA 60.228 57.895 0.00 0.00 0.00 5.36
3788 3890 1.228154 ACAAAGAAGGGACGGGCAC 60.228 57.895 0.00 0.00 0.00 5.01
3799 3901 2.809601 CGGGCACGTTTCCTCGAG 60.810 66.667 5.13 5.13 34.81 4.04
3800 3902 2.434359 GGGCACGTTTCCTCGAGG 60.434 66.667 26.32 26.32 34.70 4.63
3801 3903 2.434359 GGCACGTTTCCTCGAGGG 60.434 66.667 30.80 17.14 35.41 4.30
3802 3904 2.654877 GCACGTTTCCTCGAGGGA 59.345 61.111 30.80 21.60 43.41 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.290732 GATGGGGATGAGGGGGAAAAA 59.709 52.381 0.00 0.00 0.00 1.94
7 8 0.933700 GATGGGGATGAGGGGGAAAA 59.066 55.000 0.00 0.00 0.00 2.29
8 9 0.254059 TGATGGGGATGAGGGGGAAA 60.254 55.000 0.00 0.00 0.00 3.13
9 10 0.698886 CTGATGGGGATGAGGGGGAA 60.699 60.000 0.00 0.00 0.00 3.97
10 11 1.073474 CTGATGGGGATGAGGGGGA 60.073 63.158 0.00 0.00 0.00 4.81
11 12 1.073474 TCTGATGGGGATGAGGGGG 60.073 63.158 0.00 0.00 0.00 5.40
12 13 1.132554 CCTCTGATGGGGATGAGGGG 61.133 65.000 0.00 0.00 41.59 4.79
13 14 1.776975 GCCTCTGATGGGGATGAGGG 61.777 65.000 9.52 0.00 44.46 4.30
14 15 1.058428 TGCCTCTGATGGGGATGAGG 61.058 60.000 0.00 0.00 46.38 3.86
15 16 0.108207 GTGCCTCTGATGGGGATGAG 59.892 60.000 0.00 0.00 0.00 2.90
16 17 0.326904 AGTGCCTCTGATGGGGATGA 60.327 55.000 0.00 0.00 0.00 2.92
17 18 0.549950 AAGTGCCTCTGATGGGGATG 59.450 55.000 0.00 0.00 0.00 3.51
18 19 0.842635 GAAGTGCCTCTGATGGGGAT 59.157 55.000 0.00 0.00 0.00 3.85
19 20 0.547471 TGAAGTGCCTCTGATGGGGA 60.547 55.000 0.00 0.00 0.00 4.81
20 21 0.107312 CTGAAGTGCCTCTGATGGGG 60.107 60.000 0.00 0.00 0.00 4.96
21 22 0.907486 TCTGAAGTGCCTCTGATGGG 59.093 55.000 0.00 0.00 0.00 4.00
22 23 1.134461 CCTCTGAAGTGCCTCTGATGG 60.134 57.143 0.00 0.00 0.00 3.51
23 24 1.743091 GCCTCTGAAGTGCCTCTGATG 60.743 57.143 0.00 0.00 0.00 3.07
24 25 0.540923 GCCTCTGAAGTGCCTCTGAT 59.459 55.000 0.00 0.00 0.00 2.90
25 26 1.548357 GGCCTCTGAAGTGCCTCTGA 61.548 60.000 0.00 0.00 42.01 3.27
26 27 1.078567 GGCCTCTGAAGTGCCTCTG 60.079 63.158 0.00 0.00 42.01 3.35
27 28 1.537397 TGGCCTCTGAAGTGCCTCT 60.537 57.895 3.32 0.00 45.56 3.69
28 29 1.376553 GTGGCCTCTGAAGTGCCTC 60.377 63.158 3.32 6.50 45.56 4.70
29 30 2.753029 GTGGCCTCTGAAGTGCCT 59.247 61.111 3.32 0.00 45.56 4.75
30 31 2.360475 GGTGGCCTCTGAAGTGCC 60.360 66.667 3.32 5.77 45.56 5.01
31 32 1.376553 GAGGTGGCCTCTGAAGTGC 60.377 63.158 3.32 0.00 46.41 4.40
40 41 2.530151 TGCTTCTGGAGGTGGCCT 60.530 61.111 3.32 0.00 36.03 5.19
41 42 2.045536 CTGCTTCTGGAGGTGGCC 60.046 66.667 0.00 0.00 0.00 5.36
42 43 2.045536 CCTGCTTCTGGAGGTGGC 60.046 66.667 0.00 0.00 45.39 5.01
47 48 1.151668 CACGAAACCTGCTTCTGGAG 58.848 55.000 0.00 0.00 0.00 3.86
48 49 0.884704 GCACGAAACCTGCTTCTGGA 60.885 55.000 0.00 0.00 0.00 3.86
49 50 0.886490 AGCACGAAACCTGCTTCTGG 60.886 55.000 0.00 0.00 42.54 3.86
50 51 0.514691 GAGCACGAAACCTGCTTCTG 59.485 55.000 0.00 0.00 45.23 3.02
51 52 0.946221 CGAGCACGAAACCTGCTTCT 60.946 55.000 0.00 0.00 45.23 2.85
52 53 1.493311 CGAGCACGAAACCTGCTTC 59.507 57.895 0.00 0.00 45.23 3.86
53 54 2.607892 GCGAGCACGAAACCTGCTT 61.608 57.895 8.01 0.00 45.23 3.91
55 56 3.044305 AGCGAGCACGAAACCTGC 61.044 61.111 8.01 0.00 42.66 4.85
56 57 2.856032 CAGCGAGCACGAAACCTG 59.144 61.111 8.01 0.87 42.66 4.00
57 58 3.044305 GCAGCGAGCACGAAACCT 61.044 61.111 8.01 0.00 44.79 3.50
71 72 2.110967 ATAGCAAGCACGCCAGCAG 61.111 57.895 6.15 0.00 36.85 4.24
72 73 2.046023 ATAGCAAGCACGCCAGCA 60.046 55.556 6.15 0.00 36.85 4.41
73 74 1.442526 ATCATAGCAAGCACGCCAGC 61.443 55.000 0.00 0.00 0.00 4.85
74 75 1.869774 TATCATAGCAAGCACGCCAG 58.130 50.000 0.00 0.00 0.00 4.85
75 76 2.212652 CTTATCATAGCAAGCACGCCA 58.787 47.619 0.00 0.00 0.00 5.69
76 77 1.532868 CCTTATCATAGCAAGCACGCC 59.467 52.381 0.00 0.00 0.00 5.68
77 78 2.032549 CACCTTATCATAGCAAGCACGC 60.033 50.000 0.00 0.00 0.00 5.34
78 79 3.457234 TCACCTTATCATAGCAAGCACG 58.543 45.455 0.00 0.00 0.00 5.34
79 80 3.249559 GCTCACCTTATCATAGCAAGCAC 59.750 47.826 0.00 0.00 33.38 4.40
80 81 3.118298 TGCTCACCTTATCATAGCAAGCA 60.118 43.478 0.00 0.00 40.05 3.91
81 82 3.470709 TGCTCACCTTATCATAGCAAGC 58.529 45.455 0.00 0.00 40.05 4.01
84 85 7.226441 ACATTATTGCTCACCTTATCATAGCA 58.774 34.615 0.00 0.00 41.19 3.49
85 86 7.678947 ACATTATTGCTCACCTTATCATAGC 57.321 36.000 0.00 0.00 0.00 2.97
86 87 9.710900 TGTACATTATTGCTCACCTTATCATAG 57.289 33.333 0.00 0.00 0.00 2.23
88 89 8.978874 TTGTACATTATTGCTCACCTTATCAT 57.021 30.769 0.00 0.00 0.00 2.45
89 90 8.800370 TTTGTACATTATTGCTCACCTTATCA 57.200 30.769 0.00 0.00 0.00 2.15
90 91 9.722056 CTTTTGTACATTATTGCTCACCTTATC 57.278 33.333 0.00 0.00 0.00 1.75
91 92 9.461312 TCTTTTGTACATTATTGCTCACCTTAT 57.539 29.630 0.00 0.00 0.00 1.73
92 93 8.726988 GTCTTTTGTACATTATTGCTCACCTTA 58.273 33.333 0.00 0.00 0.00 2.69
93 94 7.230510 TGTCTTTTGTACATTATTGCTCACCTT 59.769 33.333 0.00 0.00 0.00 3.50
94 95 6.714810 TGTCTTTTGTACATTATTGCTCACCT 59.285 34.615 0.00 0.00 0.00 4.00
95 96 6.908825 TGTCTTTTGTACATTATTGCTCACC 58.091 36.000 0.00 0.00 0.00 4.02
96 97 7.584987 ACTGTCTTTTGTACATTATTGCTCAC 58.415 34.615 0.00 0.00 0.00 3.51
97 98 7.744087 ACTGTCTTTTGTACATTATTGCTCA 57.256 32.000 0.00 0.00 0.00 4.26
98 99 7.898309 CGTACTGTCTTTTGTACATTATTGCTC 59.102 37.037 0.00 0.00 39.00 4.26
99 100 7.623506 GCGTACTGTCTTTTGTACATTATTGCT 60.624 37.037 0.00 0.00 39.00 3.91
100 101 6.464834 GCGTACTGTCTTTTGTACATTATTGC 59.535 38.462 0.00 0.00 39.00 3.56
101 102 6.676995 CGCGTACTGTCTTTTGTACATTATTG 59.323 38.462 0.00 0.00 39.00 1.90
102 103 6.366877 ACGCGTACTGTCTTTTGTACATTATT 59.633 34.615 11.67 0.00 39.00 1.40
103 104 5.865552 ACGCGTACTGTCTTTTGTACATTAT 59.134 36.000 11.67 0.00 39.00 1.28
104 105 5.117440 CACGCGTACTGTCTTTTGTACATTA 59.883 40.000 13.44 0.00 39.00 1.90
105 106 4.053295 ACGCGTACTGTCTTTTGTACATT 58.947 39.130 11.67 0.00 39.00 2.71
106 107 3.427528 CACGCGTACTGTCTTTTGTACAT 59.572 43.478 13.44 0.00 39.00 2.29
107 108 2.790448 CACGCGTACTGTCTTTTGTACA 59.210 45.455 13.44 0.00 39.00 2.90
108 109 2.154389 CCACGCGTACTGTCTTTTGTAC 59.846 50.000 13.44 0.00 36.59 2.90
109 110 2.223782 ACCACGCGTACTGTCTTTTGTA 60.224 45.455 13.44 0.00 0.00 2.41
110 111 1.214367 CCACGCGTACTGTCTTTTGT 58.786 50.000 13.44 0.00 0.00 2.83
111 112 1.214367 ACCACGCGTACTGTCTTTTG 58.786 50.000 13.44 0.00 0.00 2.44
112 113 1.944032 AACCACGCGTACTGTCTTTT 58.056 45.000 13.44 0.00 0.00 2.27
113 114 2.798976 TAACCACGCGTACTGTCTTT 57.201 45.000 13.44 0.00 0.00 2.52
114 115 3.441572 ACTATAACCACGCGTACTGTCTT 59.558 43.478 13.44 3.79 0.00 3.01
127 128 3.688694 AGTTTCACCGCACTATAACCA 57.311 42.857 0.00 0.00 0.00 3.67
129 130 6.455246 GCTCTTTAGTTTCACCGCACTATAAC 60.455 42.308 0.00 0.00 0.00 1.89
138 139 7.591006 TTACATTAGCTCTTTAGTTTCACCG 57.409 36.000 0.00 0.00 0.00 4.94
140 141 9.827411 CCTTTTACATTAGCTCTTTAGTTTCAC 57.173 33.333 0.00 0.00 0.00 3.18
150 151 9.077885 TGATGTTTTTCCTTTTACATTAGCTCT 57.922 29.630 0.00 0.00 31.76 4.09
162 163 7.629157 TCTTTTTCCCTTGATGTTTTTCCTTT 58.371 30.769 0.00 0.00 0.00 3.11
164 165 6.806668 TCTTTTTCCCTTGATGTTTTTCCT 57.193 33.333 0.00 0.00 0.00 3.36
166 167 7.041848 CCACATCTTTTTCCCTTGATGTTTTTC 60.042 37.037 4.93 0.00 44.62 2.29
172 173 3.512724 AGCCACATCTTTTTCCCTTGATG 59.487 43.478 0.00 0.00 41.24 3.07
197 198 2.563471 ATGCGAGGTACTTCGTCTTC 57.437 50.000 25.62 11.61 41.55 2.87
218 225 0.107654 GGCAACTAACTCCTGCCGAT 60.108 55.000 0.00 0.00 45.72 4.18
243 250 0.822164 GAAGCAACTAGGTCCCGCTA 59.178 55.000 0.00 0.00 31.36 4.26
259 266 3.130160 GAAGCTGCGGCCCTGAAG 61.130 66.667 15.55 0.00 39.73 3.02
260 267 4.722700 GGAAGCTGCGGCCCTGAA 62.723 66.667 15.55 0.00 39.73 3.02
262 269 3.746949 CTAGGAAGCTGCGGCCCTG 62.747 68.421 21.76 10.44 39.73 4.45
263 270 3.474570 CTAGGAAGCTGCGGCCCT 61.475 66.667 15.55 17.03 39.73 5.19
300 322 1.830279 ATGATGAGGTTGCAGTGTGG 58.170 50.000 0.00 0.00 0.00 4.17
301 323 2.815503 TGAATGATGAGGTTGCAGTGTG 59.184 45.455 0.00 0.00 0.00 3.82
302 324 3.144657 TGAATGATGAGGTTGCAGTGT 57.855 42.857 0.00 0.00 0.00 3.55
303 325 3.066342 GGATGAATGATGAGGTTGCAGTG 59.934 47.826 0.00 0.00 0.00 3.66
304 326 3.285484 GGATGAATGATGAGGTTGCAGT 58.715 45.455 0.00 0.00 0.00 4.40
306 328 3.369242 TGGATGAATGATGAGGTTGCA 57.631 42.857 0.00 0.00 0.00 4.08
308 330 4.529897 TCCTTGGATGAATGATGAGGTTG 58.470 43.478 0.00 0.00 0.00 3.77
309 331 4.386088 CCTCCTTGGATGAATGATGAGGTT 60.386 45.833 0.00 0.00 38.35 3.50
325 359 3.743899 GCTTTCCTAGATCTGCCTCCTTG 60.744 52.174 5.18 0.00 0.00 3.61
326 360 2.437651 GCTTTCCTAGATCTGCCTCCTT 59.562 50.000 5.18 0.00 0.00 3.36
327 361 2.046292 GCTTTCCTAGATCTGCCTCCT 58.954 52.381 5.18 0.00 0.00 3.69
328 362 1.071542 GGCTTTCCTAGATCTGCCTCC 59.928 57.143 5.18 0.00 37.58 4.30
329 363 2.046292 AGGCTTTCCTAGATCTGCCTC 58.954 52.381 14.61 0.00 46.53 4.70
330 364 2.188818 AGGCTTTCCTAGATCTGCCT 57.811 50.000 14.61 14.61 44.90 4.75
331 365 2.948315 CAAAGGCTTTCCTAGATCTGCC 59.052 50.000 10.08 8.49 43.40 4.85
332 366 2.357323 GCAAAGGCTTTCCTAGATCTGC 59.643 50.000 10.08 4.19 43.40 4.26
369 403 0.321671 TTCCCCAGCTCGTTTCTGAG 59.678 55.000 0.00 0.00 39.05 3.35
370 404 0.034896 GTTCCCCAGCTCGTTTCTGA 59.965 55.000 0.00 0.00 33.54 3.27
371 405 0.955919 GGTTCCCCAGCTCGTTTCTG 60.956 60.000 0.00 0.00 0.00 3.02
374 408 1.375326 GAGGTTCCCCAGCTCGTTT 59.625 57.895 0.00 0.00 40.20 3.60
375 409 3.069778 GAGGTTCCCCAGCTCGTT 58.930 61.111 0.00 0.00 40.20 3.85
379 413 1.846712 GAGCTTGAGGTTCCCCAGCT 61.847 60.000 6.71 6.71 35.23 4.24
381 415 0.322008 GTGAGCTTGAGGTTCCCCAG 60.322 60.000 0.00 0.00 0.00 4.45
382 416 1.761174 GTGAGCTTGAGGTTCCCCA 59.239 57.895 0.00 0.00 0.00 4.96
387 421 3.087031 CAATGATGGTGAGCTTGAGGTT 58.913 45.455 0.00 0.00 0.00 3.50
395 429 1.022735 CAGGAGCAATGATGGTGAGC 58.977 55.000 0.00 0.00 37.41 4.26
400 434 0.106868 TGGAGCAGGAGCAATGATGG 60.107 55.000 0.00 0.00 45.49 3.51
403 437 1.300963 GGTGGAGCAGGAGCAATGA 59.699 57.895 0.00 0.00 45.49 2.57
404 438 0.609957 TTGGTGGAGCAGGAGCAATG 60.610 55.000 0.00 0.00 45.49 2.82
405 439 0.112995 TTTGGTGGAGCAGGAGCAAT 59.887 50.000 0.00 0.00 45.49 3.56
407 441 1.073722 CTTTGGTGGAGCAGGAGCA 59.926 57.895 0.00 0.00 45.49 4.26
408 442 1.676967 CCTTTGGTGGAGCAGGAGC 60.677 63.158 0.00 0.00 42.56 4.70
409 443 1.676967 GCCTTTGGTGGAGCAGGAG 60.677 63.158 0.00 0.00 0.00 3.69
410 444 2.436109 GCCTTTGGTGGAGCAGGA 59.564 61.111 0.00 0.00 0.00 3.86
411 445 2.677875 GGCCTTTGGTGGAGCAGG 60.678 66.667 0.00 0.00 0.00 4.85
412 446 2.115910 TGGCCTTTGGTGGAGCAG 59.884 61.111 3.32 0.00 0.00 4.24
413 447 2.203480 GTGGCCTTTGGTGGAGCA 60.203 61.111 3.32 0.00 0.00 4.26
414 448 2.991540 GGTGGCCTTTGGTGGAGC 60.992 66.667 3.32 0.00 0.00 4.70
415 449 1.303643 GAGGTGGCCTTTGGTGGAG 60.304 63.158 3.32 0.00 31.76 3.86
416 450 2.840753 GGAGGTGGCCTTTGGTGGA 61.841 63.158 3.32 0.00 31.76 4.02
417 451 2.283173 GGAGGTGGCCTTTGGTGG 60.283 66.667 3.32 0.00 31.76 4.61
418 452 1.903404 GTGGAGGTGGCCTTTGGTG 60.903 63.158 3.32 0.00 31.76 4.17
419 453 2.520968 GTGGAGGTGGCCTTTGGT 59.479 61.111 3.32 0.00 31.76 3.67
420 454 2.283173 GGTGGAGGTGGCCTTTGG 60.283 66.667 3.32 0.00 31.76 3.28
421 455 1.152567 TTGGTGGAGGTGGCCTTTG 60.153 57.895 3.32 0.00 31.76 2.77
422 456 1.152546 GTTGGTGGAGGTGGCCTTT 60.153 57.895 3.32 0.00 31.76 3.11
423 457 2.520968 GTTGGTGGAGGTGGCCTT 59.479 61.111 3.32 0.00 31.76 4.35
424 458 3.580319 GGTTGGTGGAGGTGGCCT 61.580 66.667 3.32 0.00 36.03 5.19
425 459 3.224007 ATGGTTGGTGGAGGTGGCC 62.224 63.158 0.00 0.00 0.00 5.36
426 460 1.978617 CATGGTTGGTGGAGGTGGC 60.979 63.158 0.00 0.00 0.00 5.01
427 461 1.304381 CCATGGTTGGTGGAGGTGG 60.304 63.158 2.57 0.00 39.12 4.61
428 462 1.978617 GCCATGGTTGGTGGAGGTG 60.979 63.158 14.67 0.00 45.57 4.00
429 463 2.440599 GCCATGGTTGGTGGAGGT 59.559 61.111 14.67 0.00 45.57 3.85
450 484 0.260816 AGGGATGTACGGCCTACTCA 59.739 55.000 0.00 0.00 0.00 3.41
452 486 0.822532 CGAGGGATGTACGGCCTACT 60.823 60.000 0.00 0.00 0.00 2.57
455 489 3.537874 GCGAGGGATGTACGGCCT 61.538 66.667 0.00 0.00 0.00 5.19
456 490 3.090219 AAGCGAGGGATGTACGGCC 62.090 63.158 0.00 0.00 0.00 6.13
457 491 1.883084 CAAGCGAGGGATGTACGGC 60.883 63.158 0.00 0.00 0.00 5.68
458 492 1.883084 GCAAGCGAGGGATGTACGG 60.883 63.158 0.00 0.00 0.00 4.02
459 493 0.872021 GAGCAAGCGAGGGATGTACG 60.872 60.000 0.00 0.00 0.00 3.67
460 494 0.872021 CGAGCAAGCGAGGGATGTAC 60.872 60.000 0.00 0.00 0.00 2.90
461 495 1.320344 ACGAGCAAGCGAGGGATGTA 61.320 55.000 0.00 0.00 34.83 2.29
462 496 2.185350 CGAGCAAGCGAGGGATGT 59.815 61.111 0.00 0.00 0.00 3.06
463 497 1.880340 GACGAGCAAGCGAGGGATG 60.880 63.158 0.00 0.00 34.83 3.51
464 498 2.010582 GAGACGAGCAAGCGAGGGAT 62.011 60.000 0.00 0.00 34.83 3.85
465 499 2.676822 AGACGAGCAAGCGAGGGA 60.677 61.111 0.00 0.00 34.83 4.20
466 500 2.202676 GAGACGAGCAAGCGAGGG 60.203 66.667 0.00 0.00 34.83 4.30
467 501 2.578178 CGAGACGAGCAAGCGAGG 60.578 66.667 0.00 0.00 34.83 4.63
468 502 1.865622 GACGAGACGAGCAAGCGAG 60.866 63.158 0.00 0.00 34.83 5.03
469 503 2.176055 GACGAGACGAGCAAGCGA 59.824 61.111 0.00 0.00 34.83 4.93
470 504 1.865622 GAGACGAGACGAGCAAGCG 60.866 63.158 0.00 0.00 37.29 4.68
471 505 0.796491 CTGAGACGAGACGAGCAAGC 60.796 60.000 0.00 0.00 0.00 4.01
472 506 0.796491 GCTGAGACGAGACGAGCAAG 60.796 60.000 0.00 0.00 0.00 4.01
473 507 1.210413 GCTGAGACGAGACGAGCAA 59.790 57.895 0.00 0.00 0.00 3.91
474 508 1.515521 TTGCTGAGACGAGACGAGCA 61.516 55.000 0.00 0.00 37.88 4.26
475 509 0.796491 CTTGCTGAGACGAGACGAGC 60.796 60.000 0.00 0.00 0.00 5.03
508 542 4.947147 TTTCGCCCTTGCCGTGCT 62.947 61.111 0.00 0.00 0.00 4.40
509 543 2.763627 AAATTTCGCCCTTGCCGTGC 62.764 55.000 0.00 0.00 0.00 5.34
510 544 1.008361 CAAATTTCGCCCTTGCCGTG 61.008 55.000 0.00 0.00 0.00 4.94
511 545 1.288752 CAAATTTCGCCCTTGCCGT 59.711 52.632 0.00 0.00 0.00 5.68
524 558 0.036732 TCAGCGACTGCCTCCAAATT 59.963 50.000 2.45 0.00 44.31 1.82
542 576 1.153549 CAGCACCGGTAGGCTCTTC 60.154 63.158 16.07 0.00 42.76 2.87
543 577 2.982130 CAGCACCGGTAGGCTCTT 59.018 61.111 16.07 0.00 42.76 2.85
544 578 3.775654 GCAGCACCGGTAGGCTCT 61.776 66.667 16.07 1.92 42.76 4.09
545 579 4.840005 GGCAGCACCGGTAGGCTC 62.840 72.222 16.07 10.99 42.76 4.70
554 588 4.735132 TAGCACGTCGGCAGCACC 62.735 66.667 4.21 0.00 35.83 5.01
555 589 3.181967 CTAGCACGTCGGCAGCAC 61.182 66.667 4.21 0.00 35.83 4.40
557 591 4.803426 AGCTAGCACGTCGGCAGC 62.803 66.667 18.83 15.31 37.84 5.25
558 592 2.125912 AAGCTAGCACGTCGGCAG 60.126 61.111 18.83 5.20 35.83 4.85
581 615 3.643199 AGGAGCTCTTTGGAAAGATCC 57.357 47.619 14.64 11.51 43.52 3.36
591 625 1.494721 TCCAACACCAAGGAGCTCTTT 59.505 47.619 14.64 9.89 32.41 2.52
592 626 1.072965 CTCCAACACCAAGGAGCTCTT 59.927 52.381 14.64 2.08 44.37 2.85
593 627 0.689623 CTCCAACACCAAGGAGCTCT 59.310 55.000 14.64 0.00 44.37 4.09
612 646 1.166531 AAGACAACCTTGCCGTCAGC 61.167 55.000 0.00 0.00 44.14 4.26
625 659 2.738643 GCAGCATAGCCGAGTAAGACAA 60.739 50.000 0.00 0.00 0.00 3.18
628 662 1.403814 AGCAGCATAGCCGAGTAAGA 58.596 50.000 0.00 0.00 34.23 2.10
636 670 6.483640 ACTTACTTAATACAAGCAGCATAGCC 59.516 38.462 0.00 0.00 34.23 3.93
645 679 7.548075 TGAAGGCAGTACTTACTTAATACAAGC 59.452 37.037 8.41 0.00 33.46 4.01
652 686 5.394883 CGGGATGAAGGCAGTACTTACTTAA 60.395 44.000 8.41 3.03 33.46 1.85
665 699 4.918810 ACAAATAATTCGGGATGAAGGC 57.081 40.909 0.00 0.00 40.65 4.35
666 700 8.247562 TGTAAAACAAATAATTCGGGATGAAGG 58.752 33.333 0.00 0.00 40.65 3.46
673 707 9.804547 CAACAAATGTAAAACAAATAATTCGGG 57.195 29.630 0.00 0.00 0.00 5.14
717 751 9.569122 ACAAAGGTATCTAACACTAAAACATGT 57.431 29.630 0.00 0.00 0.00 3.21
741 775 9.968870 GTCCCAAATTAGTTGTGTTTAAATACA 57.031 29.630 13.14 13.14 35.23 2.29
742 776 9.120422 CGTCCCAAATTAGTTGTGTTTAAATAC 57.880 33.333 8.05 8.05 35.23 1.89
743 777 8.298140 CCGTCCCAAATTAGTTGTGTTTAAATA 58.702 33.333 0.00 0.00 35.23 1.40
744 778 7.014422 TCCGTCCCAAATTAGTTGTGTTTAAAT 59.986 33.333 0.00 0.00 35.23 1.40
745 779 6.320672 TCCGTCCCAAATTAGTTGTGTTTAAA 59.679 34.615 0.00 0.00 35.23 1.52
746 780 5.826737 TCCGTCCCAAATTAGTTGTGTTTAA 59.173 36.000 0.00 0.00 35.23 1.52
747 781 5.374921 TCCGTCCCAAATTAGTTGTGTTTA 58.625 37.500 0.00 0.00 35.23 2.01
748 782 4.208746 TCCGTCCCAAATTAGTTGTGTTT 58.791 39.130 0.00 0.00 35.23 2.83
749 783 3.818773 CTCCGTCCCAAATTAGTTGTGTT 59.181 43.478 0.00 0.00 35.23 3.32
750 784 3.408634 CTCCGTCCCAAATTAGTTGTGT 58.591 45.455 0.00 0.00 35.23 3.72
751 785 2.747446 CCTCCGTCCCAAATTAGTTGTG 59.253 50.000 0.00 0.00 35.23 3.33
752 786 2.374170 ACCTCCGTCCCAAATTAGTTGT 59.626 45.455 0.00 0.00 35.23 3.32
753 787 3.067684 ACCTCCGTCCCAAATTAGTTG 57.932 47.619 0.00 0.00 36.94 3.16
754 788 4.914177 TTACCTCCGTCCCAAATTAGTT 57.086 40.909 0.00 0.00 0.00 2.24
755 789 5.163269 GGTATTACCTCCGTCCCAAATTAGT 60.163 44.000 5.56 0.00 34.73 2.24
756 790 5.163280 TGGTATTACCTCCGTCCCAAATTAG 60.163 44.000 13.90 0.00 39.58 1.73
757 791 4.720773 TGGTATTACCTCCGTCCCAAATTA 59.279 41.667 13.90 0.00 39.58 1.40
758 792 3.524380 TGGTATTACCTCCGTCCCAAATT 59.476 43.478 13.90 0.00 39.58 1.82
759 793 3.116959 TGGTATTACCTCCGTCCCAAAT 58.883 45.455 13.90 0.00 39.58 2.32
760 794 2.549082 TGGTATTACCTCCGTCCCAAA 58.451 47.619 13.90 0.00 39.58 3.28
761 795 2.250921 TGGTATTACCTCCGTCCCAA 57.749 50.000 13.90 0.00 39.58 4.12
762 796 2.322658 GATGGTATTACCTCCGTCCCA 58.677 52.381 13.90 0.00 39.58 4.37
763 797 2.322658 TGATGGTATTACCTCCGTCCC 58.677 52.381 13.90 0.00 39.58 4.46
764 798 4.377897 CTTTGATGGTATTACCTCCGTCC 58.622 47.826 13.90 0.00 39.58 4.79
765 799 3.808174 GCTTTGATGGTATTACCTCCGTC 59.192 47.826 13.90 7.53 39.58 4.79
768 802 3.883489 GTGGCTTTGATGGTATTACCTCC 59.117 47.826 13.90 6.32 39.58 4.30
773 807 3.916359 TCGGTGGCTTTGATGGTATTA 57.084 42.857 0.00 0.00 0.00 0.98
775 809 3.297134 AATCGGTGGCTTTGATGGTAT 57.703 42.857 0.00 0.00 0.00 2.73
786 820 2.485122 CGGAAGCAAATCGGTGGC 59.515 61.111 0.00 0.00 0.00 5.01
803 837 1.477553 TTCCCCATCTTGCATCAAGC 58.522 50.000 1.90 0.00 40.84 4.01
804 838 3.293337 TCATTCCCCATCTTGCATCAAG 58.707 45.455 0.00 0.37 42.25 3.02
806 840 3.385314 TTCATTCCCCATCTTGCATCA 57.615 42.857 0.00 0.00 0.00 3.07
808 842 4.141574 CCAATTTCATTCCCCATCTTGCAT 60.142 41.667 0.00 0.00 0.00 3.96
811 845 4.713321 ACTCCAATTTCATTCCCCATCTTG 59.287 41.667 0.00 0.00 0.00 3.02
812 846 4.713321 CACTCCAATTTCATTCCCCATCTT 59.287 41.667 0.00 0.00 0.00 2.40
814 848 3.385755 CCACTCCAATTTCATTCCCCATC 59.614 47.826 0.00 0.00 0.00 3.51
816 850 2.381618 TCCACTCCAATTTCATTCCCCA 59.618 45.455 0.00 0.00 0.00 4.96
818 852 2.423538 CGTCCACTCCAATTTCATTCCC 59.576 50.000 0.00 0.00 0.00 3.97
819 853 2.159379 GCGTCCACTCCAATTTCATTCC 60.159 50.000 0.00 0.00 0.00 3.01
820 854 2.487762 TGCGTCCACTCCAATTTCATTC 59.512 45.455 0.00 0.00 0.00 2.67
821 855 2.513753 TGCGTCCACTCCAATTTCATT 58.486 42.857 0.00 0.00 0.00 2.57
822 856 2.198827 TGCGTCCACTCCAATTTCAT 57.801 45.000 0.00 0.00 0.00 2.57
823 857 2.198827 ATGCGTCCACTCCAATTTCA 57.801 45.000 0.00 0.00 0.00 2.69
824 858 3.575965 AAATGCGTCCACTCCAATTTC 57.424 42.857 0.00 0.00 0.00 2.17
825 859 4.335400 AAAAATGCGTCCACTCCAATTT 57.665 36.364 0.00 0.00 0.00 1.82
845 879 8.754991 TTTACAGGAAATCTACAGGTGAAAAA 57.245 30.769 0.00 0.00 0.00 1.94
857 891 4.015872 TCGCTGGTTTTACAGGAAATCT 57.984 40.909 0.00 0.00 38.90 2.40
868 902 1.579429 GTTCGCCATCGCTGGTTTT 59.421 52.632 7.21 0.00 45.10 2.43
869 903 2.332654 GGTTCGCCATCGCTGGTTT 61.333 57.895 7.21 0.00 45.10 3.27
886 920 5.799827 TGTAGGAAAACCAAAGGAAATGG 57.200 39.130 0.00 0.00 43.84 3.16
887 921 6.578023 TGTTGTAGGAAAACCAAAGGAAATG 58.422 36.000 0.00 0.00 0.00 2.32
888 922 6.609616 TCTGTTGTAGGAAAACCAAAGGAAAT 59.390 34.615 0.00 0.00 0.00 2.17
934 968 4.888038 AAAGAAAACCTGTAACACCGAC 57.112 40.909 0.00 0.00 0.00 4.79
968 1002 6.976636 TGATGTTCGCTGTCAATTAATGTA 57.023 33.333 0.00 0.00 0.00 2.29
980 1014 0.935898 GGCAGAGATGATGTTCGCTG 59.064 55.000 1.48 1.48 43.77 5.18
992 1026 1.913262 ACCACGTCCATGGCAGAGA 60.913 57.895 6.96 0.00 44.33 3.10
1014 1048 0.323360 GTAGGCTTTCCATGGCACCA 60.323 55.000 6.96 0.00 33.74 4.17
1025 1059 1.272147 CCAGCTTGGGAAGTAGGCTTT 60.272 52.381 0.00 0.00 34.61 3.51
1059 1093 1.380785 CTGTAGGCGGTACTCCCCA 60.381 63.158 0.00 0.00 30.33 4.96
1070 1104 0.741221 CTTCACGCCCTTCTGTAGGC 60.741 60.000 0.00 0.00 43.27 3.93
1071 1105 0.895530 TCTTCACGCCCTTCTGTAGG 59.104 55.000 0.00 0.00 44.33 3.18
1086 1120 3.878160 AGGGACTCGACATCTTTCTTC 57.122 47.619 0.00 0.00 0.00 2.87
1090 1124 3.165875 TCTCAAGGGACTCGACATCTTT 58.834 45.455 0.00 0.00 38.49 2.52
1095 1129 1.351350 TCTCTCTCAAGGGACTCGACA 59.649 52.381 0.00 0.00 38.49 4.35
1137 1171 1.497286 ACCTTGGCCACCTTTGTAAGA 59.503 47.619 3.88 0.00 0.00 2.10
1152 1186 1.604593 CTGGTCCCTTGGCACCTTG 60.605 63.158 1.05 0.00 33.36 3.61
1182 1216 2.475155 TCATCTGCCCAGATCTTGACT 58.525 47.619 7.78 0.00 45.78 3.41
1204 1238 0.393944 TCGTACGACAGCTCCCTGAT 60.394 55.000 15.28 0.00 41.77 2.90
1225 1259 1.728971 CTTGTCAACGACATCCTCTGC 59.271 52.381 0.00 0.00 42.40 4.26
1226 1260 3.032017 ACTTGTCAACGACATCCTCTG 57.968 47.619 0.00 0.00 42.40 3.35
1227 1261 3.555168 GGAACTTGTCAACGACATCCTCT 60.555 47.826 7.64 0.00 42.40 3.69
1245 1279 1.409427 CCCTCGATAGACACCAGGAAC 59.591 57.143 0.00 0.00 42.67 3.62
1269 1309 4.014406 TGCTCGAGTTGACTGTAGGATTA 58.986 43.478 15.13 0.00 0.00 1.75
1270 1310 2.826128 TGCTCGAGTTGACTGTAGGATT 59.174 45.455 15.13 0.00 0.00 3.01
1276 1316 0.390860 AGCTTGCTCGAGTTGACTGT 59.609 50.000 15.13 0.00 0.00 3.55
1280 1320 2.138320 CTTTGAGCTTGCTCGAGTTGA 58.862 47.619 15.13 0.00 0.00 3.18
1287 1327 1.826385 TTAGCCCTTTGAGCTTGCTC 58.174 50.000 15.01 15.01 41.83 4.26
1289 1329 1.135721 CCATTAGCCCTTTGAGCTTGC 59.864 52.381 0.00 0.00 41.83 4.01
1317 1357 1.067516 CCTTTGGTGAACAAGCTGGTG 59.932 52.381 0.00 0.00 40.82 4.17
1365 1405 2.305927 ACGGTCCTTGATGTCCTTGATT 59.694 45.455 0.00 0.00 0.00 2.57
1381 1421 2.358737 CACCTCTTGGGCACGGTC 60.359 66.667 0.00 0.00 39.10 4.79
1406 1446 0.867746 GACTTTGCATCTGTCACGCA 59.132 50.000 8.69 0.00 0.00 5.24
1409 1449 1.125021 CGTCGACTTTGCATCTGTCAC 59.875 52.381 14.70 9.27 0.00 3.67
1418 1458 0.512952 AACAGCATCGTCGACTTTGC 59.487 50.000 24.02 24.02 35.34 3.68
1421 1461 1.291877 GGCAACAGCATCGTCGACTT 61.292 55.000 14.70 0.00 0.00 3.01
1422 1462 1.738099 GGCAACAGCATCGTCGACT 60.738 57.895 14.70 0.00 0.00 4.18
1461 1501 5.483937 AGCCAATATACGAGGATCAATGGTA 59.516 40.000 0.00 0.00 33.17 3.25
1477 1517 9.866655 TTTCTGATCCTTGTATAAAGCCAATAT 57.133 29.630 0.00 0.00 0.00 1.28
1480 1520 7.402054 TCTTTCTGATCCTTGTATAAAGCCAA 58.598 34.615 0.00 0.00 0.00 4.52
1506 1546 1.428448 CGTCTTCAATGCCAACGAGA 58.572 50.000 0.00 0.00 35.45 4.04
1528 1568 0.684805 CTCTCGGTTAGCTGGTCCCT 60.685 60.000 0.00 0.00 0.00 4.20
1534 1574 1.476891 TGTAAGCCTCTCGGTTAGCTG 59.523 52.381 0.00 0.00 35.16 4.24
1543 1583 4.125703 CCTTCATCATGTGTAAGCCTCTC 58.874 47.826 0.00 0.00 0.00 3.20
1551 1591 5.592688 TGACGTATCTCCTTCATCATGTGTA 59.407 40.000 0.00 0.00 0.00 2.90
1559 1599 5.053145 GCTGATTTGACGTATCTCCTTCAT 58.947 41.667 0.00 0.00 0.00 2.57
1563 1603 2.223829 CGGCTGATTTGACGTATCTCCT 60.224 50.000 0.00 0.00 33.11 3.69
1566 1606 1.137086 AGCGGCTGATTTGACGTATCT 59.863 47.619 0.00 0.00 41.16 1.98
1570 1610 1.741770 GGAGCGGCTGATTTGACGT 60.742 57.895 7.50 0.00 41.16 4.34
1571 1611 1.699656 CTGGAGCGGCTGATTTGACG 61.700 60.000 7.50 0.00 42.16 4.35
1583 1623 5.218885 CAACAATAGAGACTATCTGGAGCG 58.781 45.833 0.00 0.00 39.20 5.03
1588 1646 5.508153 CGGGTCCAACAATAGAGACTATCTG 60.508 48.000 0.00 0.00 39.20 2.90
1611 1669 1.135460 GTTGTCTTACCGAGTCCTCCG 60.135 57.143 0.00 0.00 0.00 4.63
1623 1681 2.158682 TGCCTTGGCAAGAGTTGTCTTA 60.159 45.455 28.18 1.22 41.40 2.10
1710 1768 3.206150 GTCCTTGAGAACTTTGCTCACA 58.794 45.455 0.00 0.00 41.72 3.58
1715 1773 4.393371 GGAGTATGTCCTTGAGAACTTTGC 59.607 45.833 0.00 0.00 42.99 3.68
1734 1792 1.059913 CCAGTTCCAGTTCCAGGAGT 58.940 55.000 0.00 0.00 36.33 3.85
1751 1809 6.663953 GGCTATATCACTCATAGAGTTACCCA 59.336 42.308 0.00 0.00 41.37 4.51
1753 1811 7.176865 TGTGGCTATATCACTCATAGAGTTACC 59.823 40.741 0.00 0.00 41.37 2.85
1758 1816 9.183368 TCTAATGTGGCTATATCACTCATAGAG 57.817 37.037 7.56 0.00 36.21 2.43
1761 1819 9.479549 TCATCTAATGTGGCTATATCACTCATA 57.520 33.333 7.56 0.00 36.21 2.15
1762 1820 8.371571 TCATCTAATGTGGCTATATCACTCAT 57.628 34.615 7.56 0.00 36.21 2.90
1763 1821 7.781324 TCATCTAATGTGGCTATATCACTCA 57.219 36.000 7.56 0.00 36.21 3.41
1764 1822 9.149225 CTTTCATCTAATGTGGCTATATCACTC 57.851 37.037 7.56 0.00 36.21 3.51
1778 1839 8.724229 TGTTGATGACTTGTCTTTCATCTAATG 58.276 33.333 11.71 0.00 45.71 1.90
1782 1843 7.284034 AGTTTGTTGATGACTTGTCTTTCATCT 59.716 33.333 11.71 0.00 45.71 2.90
1795 1856 4.499183 AGATCTCGGAGTTTGTTGATGAC 58.501 43.478 4.69 0.00 0.00 3.06
1825 1886 2.698797 TGGATGGTCCGAACCTCTTATC 59.301 50.000 0.00 0.00 46.60 1.75
1873 1939 6.605471 AGGTACACTGAGATAATTGTGTCA 57.395 37.500 2.09 2.09 41.87 3.58
1912 1978 5.047235 AGTGCCTTAAGTCTTACAGATCGTT 60.047 40.000 0.97 0.00 0.00 3.85
1914 1980 5.000012 AGTGCCTTAAGTCTTACAGATCG 58.000 43.478 0.97 0.00 0.00 3.69
1918 1984 6.868622 ACATCTAGTGCCTTAAGTCTTACAG 58.131 40.000 0.97 0.00 0.00 2.74
1934 2004 5.586243 GCCACATTGTGTCAATACATCTAGT 59.414 40.000 15.34 0.00 38.08 2.57
1999 2079 5.706447 ACTCTGGGAGTAGTAGATATGCAA 58.294 41.667 0.00 0.00 41.51 4.08
2014 2094 6.574465 GCAAAATTGACTACTAGACTCTGGGA 60.574 42.308 0.00 0.00 0.00 4.37
2015 2095 5.582665 GCAAAATTGACTACTAGACTCTGGG 59.417 44.000 0.00 0.00 0.00 4.45
2016 2096 6.402222 AGCAAAATTGACTACTAGACTCTGG 58.598 40.000 0.00 0.00 0.00 3.86
2017 2097 8.247562 ACTAGCAAAATTGACTACTAGACTCTG 58.752 37.037 0.00 0.00 33.11 3.35
2018 2098 8.356000 ACTAGCAAAATTGACTACTAGACTCT 57.644 34.615 0.00 0.00 33.11 3.24
2019 2099 9.724839 CTACTAGCAAAATTGACTACTAGACTC 57.275 37.037 0.00 0.00 33.11 3.36
2020 2100 9.245481 ACTACTAGCAAAATTGACTACTAGACT 57.755 33.333 0.00 0.00 33.11 3.24
2061 2143 8.373981 AGATGCACTAGCTGACTGATATAAAAT 58.626 33.333 0.00 0.00 42.74 1.82
2068 2150 3.029570 TGAGATGCACTAGCTGACTGAT 58.970 45.455 0.00 0.00 42.74 2.90
2069 2151 2.426381 CTGAGATGCACTAGCTGACTGA 59.574 50.000 0.00 0.00 42.74 3.41
2070 2152 2.811855 CTGAGATGCACTAGCTGACTG 58.188 52.381 0.00 0.00 42.74 3.51
2073 2155 1.188863 TGCTGAGATGCACTAGCTGA 58.811 50.000 12.58 0.00 42.74 4.26
2077 2159 5.539979 AGTTATGATGCTGAGATGCACTAG 58.460 41.667 0.00 0.00 46.33 2.57
2079 2161 4.141779 TGAGTTATGATGCTGAGATGCACT 60.142 41.667 0.00 0.00 46.33 4.40
2175 2258 5.240713 GACTGAATAGGCTGTCCAAATTG 57.759 43.478 0.00 0.00 32.54 2.32
2195 2278 9.665264 CTTTGTTTTCTAAAAGTACATCAGGAC 57.335 33.333 0.00 0.00 0.00 3.85
2238 2324 6.586344 TCCAAATGATAGCAAGAAGTAGGAG 58.414 40.000 0.00 0.00 0.00 3.69
2243 2329 5.431765 ACGATCCAAATGATAGCAAGAAGT 58.568 37.500 0.00 0.00 32.41 3.01
2247 2334 5.065090 TGTTGACGATCCAAATGATAGCAAG 59.935 40.000 0.00 0.00 32.41 4.01
2254 2341 3.057969 AGCTGTTGACGATCCAAATGA 57.942 42.857 0.00 0.00 0.00 2.57
2262 2349 1.893137 TGTCTGGTAGCTGTTGACGAT 59.107 47.619 0.00 0.00 0.00 3.73
2264 2351 2.370281 ATGTCTGGTAGCTGTTGACG 57.630 50.000 0.00 0.00 0.00 4.35
2267 2354 3.930336 TGAGAATGTCTGGTAGCTGTTG 58.070 45.455 0.00 0.00 0.00 3.33
2272 2359 7.175347 TCCATATATGAGAATGTCTGGTAGC 57.825 40.000 14.54 0.00 0.00 3.58
2389 2476 2.830104 CATGCATGAATCCGACTGAGA 58.170 47.619 22.59 0.00 0.00 3.27
2390 2477 1.263484 GCATGCATGAATCCGACTGAG 59.737 52.381 30.64 0.00 0.00 3.35
2397 2484 5.050644 TCGATAAATGCATGCATGAATCC 57.949 39.130 32.79 18.95 36.68 3.01
2398 2485 6.034577 CCATTCGATAAATGCATGCATGAATC 59.965 38.462 32.79 30.44 42.96 2.52
2420 2507 6.070653 TGCAATAAAGAAGGAATGAAAGCCAT 60.071 34.615 0.00 0.00 36.99 4.40
2468 2560 4.806342 AAGGAAAACACACGTACATGTC 57.194 40.909 0.00 0.00 0.00 3.06
2473 2565 5.467735 ACTTGGATAAGGAAAACACACGTAC 59.532 40.000 0.00 0.00 38.26 3.67
2477 2569 4.583073 ACCACTTGGATAAGGAAAACACAC 59.417 41.667 1.14 0.00 38.26 3.82
2538 2630 9.658799 AGCCATGCATTAGTTAGTATATAACTG 57.341 33.333 0.00 0.00 39.39 3.16
2543 2642 7.335422 GCAAGAGCCATGCATTAGTTAGTATAT 59.665 37.037 0.00 0.00 43.29 0.86
2695 2797 2.030363 CCGGTATTTGCAGCAACTTCAA 60.030 45.455 7.54 0.00 0.00 2.69
2705 2807 1.832883 AGACATTGCCGGTATTTGCA 58.167 45.000 1.90 0.00 35.27 4.08
2711 2813 1.553248 AGCTTGTAGACATTGCCGGTA 59.447 47.619 1.90 0.00 0.00 4.02
2717 2819 3.307242 GCGGTTCTAGCTTGTAGACATTG 59.693 47.826 0.00 0.00 0.00 2.82
2718 2820 3.195825 AGCGGTTCTAGCTTGTAGACATT 59.804 43.478 0.00 0.00 43.24 2.71
2738 2840 4.999950 TCTTCAGACAAATCAGGAGAAAGC 59.000 41.667 0.00 0.00 0.00 3.51
2795 2897 4.279922 ACCCTTTTTCGGTAAGGACATTTG 59.720 41.667 11.22 0.00 44.01 2.32
3365 3467 5.014123 TCAGAAGGTTGACCATAAGGACATT 59.986 40.000 2.56 0.00 39.29 2.71
3366 3468 4.536090 TCAGAAGGTTGACCATAAGGACAT 59.464 41.667 2.56 0.00 39.29 3.06
3367 3469 3.907474 TCAGAAGGTTGACCATAAGGACA 59.093 43.478 2.56 0.00 37.80 4.02
3368 3470 4.508662 CTCAGAAGGTTGACCATAAGGAC 58.491 47.826 2.56 0.00 38.89 3.85
3369 3471 3.519510 CCTCAGAAGGTTGACCATAAGGA 59.480 47.826 2.56 0.00 37.94 3.36
3399 3501 7.279758 ACACCACCACATTTTTGTAGAATTTTG 59.720 33.333 0.00 0.00 0.00 2.44
3403 3505 5.738783 GCACACCACCACATTTTTGTAGAAT 60.739 40.000 0.00 0.00 0.00 2.40
3411 3513 1.739049 CGGCACACCACCACATTTT 59.261 52.632 0.00 0.00 34.57 1.82
3497 3599 6.586344 TCTCCAAATGCAGAACTAATAGAGG 58.414 40.000 0.00 0.00 0.00 3.69
3505 3607 7.568349 TCTGTATTATCTCCAAATGCAGAACT 58.432 34.615 12.27 0.00 46.35 3.01
3509 3611 8.815189 CGATATCTGTATTATCTCCAAATGCAG 58.185 37.037 0.34 7.36 43.97 4.41
3570 3672 5.961421 AGGCCTTAGATGATAAGGTAGATCC 59.039 44.000 0.00 7.17 44.46 3.36
3617 3719 9.339850 CTTTCATGATCAAAGTATCTTCTGGAT 57.660 33.333 0.00 0.00 38.38 3.41
3645 3747 6.010219 GGCTACCCACATCCATATTAATGTT 58.990 40.000 0.00 0.00 33.92 2.71
3651 3753 2.334977 TCGGCTACCCACATCCATATT 58.665 47.619 0.00 0.00 0.00 1.28
3696 3798 6.488006 TCTCTCCAATCTCAAAGAAACCAAAG 59.512 38.462 0.00 0.00 0.00 2.77
3697 3799 6.364701 TCTCTCCAATCTCAAAGAAACCAAA 58.635 36.000 0.00 0.00 0.00 3.28
3699 3801 5.307976 TCTCTCTCCAATCTCAAAGAAACCA 59.692 40.000 0.00 0.00 0.00 3.67
3702 3804 8.372877 AGTATCTCTCTCCAATCTCAAAGAAA 57.627 34.615 0.00 0.00 0.00 2.52
3754 3856 2.169832 TTGTGCTCTACAGGCAGAAC 57.830 50.000 0.00 0.00 41.10 3.01
3756 3858 1.970640 TCTTTGTGCTCTACAGGCAGA 59.029 47.619 0.00 0.00 41.10 4.26
3782 3884 2.809601 CTCGAGGAAACGTGCCCG 60.810 66.667 3.91 7.82 40.83 6.13
3783 3885 2.434359 CCTCGAGGAAACGTGCCC 60.434 66.667 28.21 1.43 37.39 5.36
3784 3886 2.434359 CCCTCGAGGAAACGTGCC 60.434 66.667 33.39 0.00 38.24 5.01
3785 3887 2.654877 TCCCTCGAGGAAACGTGC 59.345 61.111 33.39 0.00 43.78 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.