Multiple sequence alignment - TraesCS2B01G084100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G084100 chr2B 100.000 4730 0 0 1 4730 47153993 47158722 0.000000e+00 8735.0
1 TraesCS2B01G084100 chr2B 94.348 4299 183 20 268 4528 46890141 46894417 0.000000e+00 6538.0
2 TraesCS2B01G084100 chr2B 82.685 2726 454 16 990 3704 23649517 23652235 0.000000e+00 2403.0
3 TraesCS2B01G084100 chr2B 95.238 273 2 3 1 272 47150567 47150305 5.660000e-114 422.0
4 TraesCS2B01G084100 chr2D 83.364 2723 441 10 990 3704 12904597 12907315 0.000000e+00 2508.0
5 TraesCS2B01G084100 chr2D 92.268 194 14 1 80 272 651526898 651527091 1.680000e-69 274.0
6 TraesCS2B01G084100 chr6D 93.085 188 12 1 82 268 36034333 36034146 1.680000e-69 274.0
7 TraesCS2B01G084100 chr6D 80.851 94 18 0 3479 3572 451763571 451763664 1.830000e-09 75.0
8 TraesCS2B01G084100 chr5B 92.105 190 14 1 84 272 236377581 236377392 2.810000e-67 267.0
9 TraesCS2B01G084100 chr5B 92.432 185 13 1 84 267 6376620 6376436 3.630000e-66 263.0
10 TraesCS2B01G084100 chr5B 91.579 190 15 1 84 272 236687333 236687144 1.310000e-65 261.0
11 TraesCS2B01G084100 chr5D 91.579 190 15 1 84 272 208739981 208740170 1.310000e-65 261.0
12 TraesCS2B01G084100 chr5D 89.216 204 20 2 69 271 514911783 514911581 2.180000e-63 254.0
13 TraesCS2B01G084100 chr3D 91.579 190 15 1 84 272 572009615 572009804 1.310000e-65 261.0
14 TraesCS2B01G084100 chr1D 96.970 33 1 0 3530 3562 431595334 431595302 6.610000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G084100 chr2B 47153993 47158722 4729 False 8735 8735 100.000 1 4730 1 chr2B.!!$F3 4729
1 TraesCS2B01G084100 chr2B 46890141 46894417 4276 False 6538 6538 94.348 268 4528 1 chr2B.!!$F2 4260
2 TraesCS2B01G084100 chr2B 23649517 23652235 2718 False 2403 2403 82.685 990 3704 1 chr2B.!!$F1 2714
3 TraesCS2B01G084100 chr2D 12904597 12907315 2718 False 2508 2508 83.364 990 3704 1 chr2D.!!$F1 2714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 198 0.248289 CTTTTCAAGCCCATGCCTGG 59.752 55.0 0.13 0.13 42.73 4.45 F
264 265 0.323087 GGCCGGGCTCTTCCTTAAAA 60.323 55.0 22.87 0.00 34.39 1.52 F
542 543 0.381801 CGAAACAAGTTGCTGCCACT 59.618 50.0 1.81 0.00 0.00 4.00 F
2278 2282 0.109458 TGACACGATCGGAAACCTCG 60.109 55.0 20.98 0.00 37.84 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 2011 1.544691 TCTACAGCCTCGAACTGGTTC 59.455 52.381 16.91 3.62 39.55 3.62 R
2250 2254 1.678627 CCGATCGTGTCAGGAATCTCT 59.321 52.381 15.09 0.00 0.00 3.10 R
2324 2328 0.883833 GCCAACAGACTGTGGGATTG 59.116 55.000 30.17 14.26 44.46 2.67 R
4096 4125 0.029300 CTCACTTTGTGTGTTGCGGG 59.971 55.000 0.00 0.00 46.27 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.860918 TTATCGTTTGAGAACTAGCTCTAGA 57.139 36.000 10.63 0.00 36.97 2.43
25 26 6.952773 ATCGTTTGAGAACTAGCTCTAGAT 57.047 37.500 10.63 0.00 36.97 1.98
26 27 9.557061 TTATCGTTTGAGAACTAGCTCTAGATA 57.443 33.333 10.63 0.00 36.97 1.98
27 28 7.485418 TCGTTTGAGAACTAGCTCTAGATAG 57.515 40.000 10.63 0.81 39.72 2.08
28 29 6.017770 TCGTTTGAGAACTAGCTCTAGATAGC 60.018 42.308 10.63 0.00 37.53 2.97
38 39 3.848726 GCTCTAGATAGCTTGGAGATGC 58.151 50.000 12.71 1.63 39.50 3.91
39 40 3.257873 GCTCTAGATAGCTTGGAGATGCA 59.742 47.826 12.71 0.00 39.50 3.96
40 41 4.081531 GCTCTAGATAGCTTGGAGATGCAT 60.082 45.833 0.00 0.00 39.50 3.96
41 42 5.126869 GCTCTAGATAGCTTGGAGATGCATA 59.873 44.000 0.00 0.00 39.50 3.14
42 43 6.183360 GCTCTAGATAGCTTGGAGATGCATAT 60.183 42.308 0.00 0.00 39.50 1.78
43 44 7.345422 TCTAGATAGCTTGGAGATGCATATC 57.655 40.000 13.00 13.00 0.00 1.63
44 45 6.894103 TCTAGATAGCTTGGAGATGCATATCA 59.106 38.462 22.04 7.72 35.70 2.15
45 46 6.563037 AGATAGCTTGGAGATGCATATCAT 57.437 37.500 22.04 6.48 38.32 2.45
46 47 7.672122 AGATAGCTTGGAGATGCATATCATA 57.328 36.000 22.04 8.37 35.05 2.15
47 48 8.265108 AGATAGCTTGGAGATGCATATCATAT 57.735 34.615 22.04 11.40 35.05 1.78
48 49 8.369424 AGATAGCTTGGAGATGCATATCATATC 58.631 37.037 22.04 17.62 41.46 1.63
49 50 6.309389 AGCTTGGAGATGCATATCATATCA 57.691 37.500 22.04 8.57 43.40 2.15
50 51 6.718294 AGCTTGGAGATGCATATCATATCAA 58.282 36.000 22.04 14.96 43.40 2.57
51 52 7.347252 AGCTTGGAGATGCATATCATATCAAT 58.653 34.615 22.04 1.87 43.40 2.57
52 53 7.499563 AGCTTGGAGATGCATATCATATCAATC 59.500 37.037 22.04 12.16 43.40 2.67
53 54 7.282450 GCTTGGAGATGCATATCATATCAATCA 59.718 37.037 22.04 6.15 43.40 2.57
54 55 8.502105 TTGGAGATGCATATCATATCAATCAC 57.498 34.615 22.04 2.27 43.40 3.06
55 56 7.626390 TGGAGATGCATATCATATCAATCACA 58.374 34.615 22.04 4.79 43.40 3.58
56 57 8.104566 TGGAGATGCATATCATATCAATCACAA 58.895 33.333 22.04 0.00 43.40 3.33
57 58 8.953313 GGAGATGCATATCATATCAATCACAAA 58.047 33.333 22.04 0.00 43.40 2.83
58 59 9.770503 GAGATGCATATCATATCAATCACAAAC 57.229 33.333 16.33 0.00 41.72 2.93
59 60 9.292195 AGATGCATATCATATCAATCACAAACA 57.708 29.630 0.00 0.00 35.05 2.83
60 61 9.902196 GATGCATATCATATCAATCACAAACAA 57.098 29.630 0.00 0.00 35.05 2.83
61 62 9.908152 ATGCATATCATATCAATCACAAACAAG 57.092 29.630 0.00 0.00 32.59 3.16
62 63 9.122779 TGCATATCATATCAATCACAAACAAGA 57.877 29.630 0.00 0.00 0.00 3.02
63 64 9.390795 GCATATCATATCAATCACAAACAAGAC 57.609 33.333 0.00 0.00 0.00 3.01
64 65 9.590088 CATATCATATCAATCACAAACAAGACG 57.410 33.333 0.00 0.00 0.00 4.18
65 66 5.868257 TCATATCAATCACAAACAAGACGC 58.132 37.500 0.00 0.00 0.00 5.19
66 67 5.643348 TCATATCAATCACAAACAAGACGCT 59.357 36.000 0.00 0.00 0.00 5.07
67 68 3.878086 TCAATCACAAACAAGACGCTC 57.122 42.857 0.00 0.00 0.00 5.03
68 69 2.220824 TCAATCACAAACAAGACGCTCG 59.779 45.455 0.00 0.00 0.00 5.03
69 70 0.512952 ATCACAAACAAGACGCTCGC 59.487 50.000 0.00 0.00 0.00 5.03
70 71 0.529773 TCACAAACAAGACGCTCGCT 60.530 50.000 0.00 0.00 0.00 4.93
71 72 0.304705 CACAAACAAGACGCTCGCTT 59.695 50.000 0.00 0.00 0.00 4.68
72 73 0.582005 ACAAACAAGACGCTCGCTTC 59.418 50.000 0.00 0.00 0.00 3.86
73 74 0.861837 CAAACAAGACGCTCGCTTCT 59.138 50.000 0.00 0.00 0.00 2.85
74 75 2.058798 CAAACAAGACGCTCGCTTCTA 58.941 47.619 0.00 0.00 0.00 2.10
75 76 1.699343 AACAAGACGCTCGCTTCTAC 58.301 50.000 0.00 0.00 0.00 2.59
76 77 0.882474 ACAAGACGCTCGCTTCTACT 59.118 50.000 0.00 0.00 0.00 2.57
77 78 1.135632 ACAAGACGCTCGCTTCTACTC 60.136 52.381 0.00 0.00 0.00 2.59
78 79 1.131504 CAAGACGCTCGCTTCTACTCT 59.868 52.381 0.00 0.00 0.00 3.24
79 80 1.011333 AGACGCTCGCTTCTACTCTC 58.989 55.000 0.00 0.00 0.00 3.20
80 81 0.727970 GACGCTCGCTTCTACTCTCA 59.272 55.000 0.00 0.00 0.00 3.27
81 82 1.130749 GACGCTCGCTTCTACTCTCAA 59.869 52.381 0.00 0.00 0.00 3.02
82 83 1.135632 ACGCTCGCTTCTACTCTCAAC 60.136 52.381 0.00 0.00 0.00 3.18
83 84 1.131504 CGCTCGCTTCTACTCTCAACT 59.868 52.381 0.00 0.00 0.00 3.16
84 85 2.352034 CGCTCGCTTCTACTCTCAACTA 59.648 50.000 0.00 0.00 0.00 2.24
85 86 3.002862 CGCTCGCTTCTACTCTCAACTAT 59.997 47.826 0.00 0.00 0.00 2.12
86 87 4.211584 CGCTCGCTTCTACTCTCAACTATA 59.788 45.833 0.00 0.00 0.00 1.31
87 88 5.106869 CGCTCGCTTCTACTCTCAACTATAT 60.107 44.000 0.00 0.00 0.00 0.86
88 89 6.311723 GCTCGCTTCTACTCTCAACTATATC 58.688 44.000 0.00 0.00 0.00 1.63
89 90 6.148811 GCTCGCTTCTACTCTCAACTATATCT 59.851 42.308 0.00 0.00 0.00 1.98
90 91 7.428282 TCGCTTCTACTCTCAACTATATCTG 57.572 40.000 0.00 0.00 0.00 2.90
91 92 6.428465 TCGCTTCTACTCTCAACTATATCTGG 59.572 42.308 0.00 0.00 0.00 3.86
92 93 6.386654 GCTTCTACTCTCAACTATATCTGGC 58.613 44.000 0.00 0.00 0.00 4.85
93 94 6.571537 GCTTCTACTCTCAACTATATCTGGCC 60.572 46.154 0.00 0.00 0.00 5.36
94 95 5.004448 TCTACTCTCAACTATATCTGGCCG 58.996 45.833 0.00 0.00 0.00 6.13
95 96 3.567397 ACTCTCAACTATATCTGGCCGT 58.433 45.455 0.00 0.00 0.00 5.68
96 97 3.319405 ACTCTCAACTATATCTGGCCGTG 59.681 47.826 0.00 0.00 0.00 4.94
97 98 2.628178 TCTCAACTATATCTGGCCGTGG 59.372 50.000 0.00 0.00 0.00 4.94
98 99 1.691976 TCAACTATATCTGGCCGTGGG 59.308 52.381 0.00 0.00 0.00 4.61
131 132 3.356814 GCTTGGACCAGGCCTAAAA 57.643 52.632 17.58 0.00 30.01 1.52
132 133 1.627864 GCTTGGACCAGGCCTAAAAA 58.372 50.000 17.58 0.00 30.01 1.94
149 150 2.863401 AAAAGCCCACGACAGAAAAC 57.137 45.000 0.00 0.00 0.00 2.43
150 151 2.052782 AAAGCCCACGACAGAAAACT 57.947 45.000 0.00 0.00 0.00 2.66
151 152 1.308998 AAGCCCACGACAGAAAACTG 58.691 50.000 0.00 0.00 0.00 3.16
152 153 0.468226 AGCCCACGACAGAAAACTGA 59.532 50.000 0.00 0.00 0.00 3.41
153 154 0.868406 GCCCACGACAGAAAACTGAG 59.132 55.000 0.00 0.00 0.00 3.35
154 155 1.512926 CCCACGACAGAAAACTGAGG 58.487 55.000 0.00 0.00 0.00 3.86
155 156 0.868406 CCACGACAGAAAACTGAGGC 59.132 55.000 0.00 0.00 0.00 4.70
156 157 0.868406 CACGACAGAAAACTGAGGCC 59.132 55.000 0.00 0.00 0.00 5.19
157 158 0.250338 ACGACAGAAAACTGAGGCCC 60.250 55.000 0.00 0.00 0.00 5.80
158 159 0.250295 CGACAGAAAACTGAGGCCCA 60.250 55.000 0.00 0.00 0.00 5.36
171 172 4.256180 GCCCAGGCCCTACCATCG 62.256 72.222 0.00 0.00 43.14 3.84
172 173 3.560251 CCCAGGCCCTACCATCGG 61.560 72.222 0.00 0.00 43.14 4.18
173 174 3.560251 CCAGGCCCTACCATCGGG 61.560 72.222 0.00 0.00 44.89 5.14
179 180 2.836020 CCCTACCATCGGGCTTACT 58.164 57.895 0.00 0.00 37.90 2.24
180 181 1.129058 CCCTACCATCGGGCTTACTT 58.871 55.000 0.00 0.00 37.90 2.24
181 182 1.489230 CCCTACCATCGGGCTTACTTT 59.511 52.381 0.00 0.00 37.90 2.66
182 183 2.092592 CCCTACCATCGGGCTTACTTTT 60.093 50.000 0.00 0.00 37.90 2.27
183 184 3.203716 CCTACCATCGGGCTTACTTTTC 58.796 50.000 0.00 0.00 37.90 2.29
184 185 2.871096 ACCATCGGGCTTACTTTTCA 57.129 45.000 0.00 0.00 37.90 2.69
185 186 3.149005 ACCATCGGGCTTACTTTTCAA 57.851 42.857 0.00 0.00 37.90 2.69
186 187 3.081804 ACCATCGGGCTTACTTTTCAAG 58.918 45.455 0.00 0.00 37.90 3.02
187 188 2.159379 CCATCGGGCTTACTTTTCAAGC 60.159 50.000 0.00 0.00 46.18 4.01
193 194 2.610433 GCTTACTTTTCAAGCCCATGC 58.390 47.619 0.00 0.00 42.08 4.06
194 195 2.675032 GCTTACTTTTCAAGCCCATGCC 60.675 50.000 0.00 0.00 42.08 4.40
195 196 2.603075 TACTTTTCAAGCCCATGCCT 57.397 45.000 0.00 0.00 38.69 4.75
196 197 0.971386 ACTTTTCAAGCCCATGCCTG 59.029 50.000 0.00 0.00 38.69 4.85
197 198 0.248289 CTTTTCAAGCCCATGCCTGG 59.752 55.000 0.13 0.13 42.73 4.45
204 205 4.468769 CCCATGCCTGGCCCATGT 62.469 66.667 17.53 0.00 41.64 3.21
205 206 3.151710 CCATGCCTGGCCCATGTG 61.152 66.667 17.53 7.13 38.67 3.21
206 207 3.151710 CATGCCTGGCCCATGTGG 61.152 66.667 17.53 2.60 36.26 4.17
207 208 3.675790 ATGCCTGGCCCATGTGGT 61.676 61.111 17.53 0.00 36.04 4.16
208 209 3.667217 ATGCCTGGCCCATGTGGTC 62.667 63.158 17.53 0.00 40.11 4.02
214 215 1.293179 GGCCCATGTGGTCAAAAGC 59.707 57.895 0.00 0.00 39.18 3.51
215 216 1.293179 GCCCATGTGGTCAAAAGCC 59.707 57.895 0.00 0.00 36.04 4.35
216 217 1.974543 CCCATGTGGTCAAAAGCCC 59.025 57.895 0.00 0.00 0.00 5.19
217 218 0.542702 CCCATGTGGTCAAAAGCCCT 60.543 55.000 0.00 0.00 0.00 5.19
218 219 0.890683 CCATGTGGTCAAAAGCCCTC 59.109 55.000 0.00 0.00 0.00 4.30
219 220 1.619654 CATGTGGTCAAAAGCCCTCA 58.380 50.000 0.00 0.00 0.00 3.86
220 221 1.962807 CATGTGGTCAAAAGCCCTCAA 59.037 47.619 0.00 0.00 0.00 3.02
221 222 2.151502 TGTGGTCAAAAGCCCTCAAA 57.848 45.000 0.00 0.00 0.00 2.69
222 223 2.461695 TGTGGTCAAAAGCCCTCAAAA 58.538 42.857 0.00 0.00 0.00 2.44
223 224 2.430332 TGTGGTCAAAAGCCCTCAAAAG 59.570 45.455 0.00 0.00 0.00 2.27
224 225 1.412343 TGGTCAAAAGCCCTCAAAAGC 59.588 47.619 0.00 0.00 0.00 3.51
225 226 1.270305 GGTCAAAAGCCCTCAAAAGCC 60.270 52.381 0.00 0.00 0.00 4.35
226 227 1.047801 TCAAAAGCCCTCAAAAGCCC 58.952 50.000 0.00 0.00 0.00 5.19
227 228 1.051008 CAAAAGCCCTCAAAAGCCCT 58.949 50.000 0.00 0.00 0.00 5.19
228 229 1.417517 CAAAAGCCCTCAAAAGCCCTT 59.582 47.619 0.00 0.00 0.00 3.95
229 230 2.632512 CAAAAGCCCTCAAAAGCCCTTA 59.367 45.455 0.00 0.00 0.00 2.69
230 231 2.222227 AAGCCCTCAAAAGCCCTTAG 57.778 50.000 0.00 0.00 0.00 2.18
231 232 0.332972 AGCCCTCAAAAGCCCTTAGG 59.667 55.000 0.00 0.00 0.00 2.69
261 262 3.087906 GGGCCGGGCTCTTCCTTA 61.088 66.667 28.80 0.00 34.39 2.69
262 263 2.676265 GGGCCGGGCTCTTCCTTAA 61.676 63.158 28.80 0.00 34.39 1.85
263 264 1.301954 GGCCGGGCTCTTCCTTAAA 59.698 57.895 22.87 0.00 34.39 1.52
264 265 0.323087 GGCCGGGCTCTTCCTTAAAA 60.323 55.000 22.87 0.00 34.39 1.52
265 266 1.685180 GGCCGGGCTCTTCCTTAAAAT 60.685 52.381 22.87 0.00 34.39 1.82
266 267 1.405463 GCCGGGCTCTTCCTTAAAATG 59.595 52.381 12.87 0.00 34.39 2.32
331 332 6.206243 GCAGAGCAATCATCTATTGTATGGTT 59.794 38.462 0.00 0.00 45.78 3.67
478 479 7.908193 AACTAAACGATCACAAACACAAATC 57.092 32.000 0.00 0.00 0.00 2.17
479 480 7.259290 ACTAAACGATCACAAACACAAATCT 57.741 32.000 0.00 0.00 0.00 2.40
481 482 4.749245 ACGATCACAAACACAAATCTCC 57.251 40.909 0.00 0.00 0.00 3.71
491 492 8.230486 CACAAACACAAATCTCCTAACATCTAC 58.770 37.037 0.00 0.00 0.00 2.59
502 503 4.959839 TCCTAACATCTACCAGCATACACA 59.040 41.667 0.00 0.00 0.00 3.72
532 533 3.321111 TGAAGTAGGAGCTCGAAACAAGT 59.679 43.478 7.83 0.00 0.00 3.16
542 543 0.381801 CGAAACAAGTTGCTGCCACT 59.618 50.000 1.81 0.00 0.00 4.00
587 588 2.435059 GAGCTTCTGTCCCCGTGC 60.435 66.667 0.00 0.00 0.00 5.34
660 661 3.035363 TGTCCTGTTGTGTCTAAGGTCA 58.965 45.455 0.00 0.00 0.00 4.02
678 679 1.915769 ACACCTCTCTGACCCTGCC 60.916 63.158 0.00 0.00 0.00 4.85
679 680 2.681778 ACCTCTCTGACCCTGCCG 60.682 66.667 0.00 0.00 0.00 5.69
680 681 3.465403 CCTCTCTGACCCTGCCGG 61.465 72.222 0.00 0.00 37.81 6.13
681 682 2.363018 CTCTCTGACCCTGCCGGA 60.363 66.667 5.05 0.00 34.64 5.14
682 683 2.363018 TCTCTGACCCTGCCGGAG 60.363 66.667 5.05 0.00 38.16 4.63
683 684 4.154347 CTCTGACCCTGCCGGAGC 62.154 72.222 5.05 0.00 40.48 4.70
693 694 2.590704 TGCCGGAGCATTAGACTCA 58.409 52.632 5.05 0.00 46.52 3.41
702 703 5.619220 GGAGCATTAGACTCATGGAGAAAT 58.381 41.667 0.00 0.00 35.79 2.17
712 713 5.654317 CTCATGGAGAAATGAGTCATTCG 57.346 43.478 18.52 2.84 45.68 3.34
775 776 1.002468 CAGCTCGTGTTGTTTCCCTTG 60.002 52.381 0.00 0.00 0.00 3.61
834 835 4.986659 CCTTGCATTTCTGACCTTCTTTTG 59.013 41.667 0.00 0.00 0.00 2.44
845 846 4.834496 TGACCTTCTTTTGCTCCATGAAAT 59.166 37.500 0.00 0.00 0.00 2.17
968 969 7.047891 GGGATGATTCCAAATAGCATATCGTA 58.952 38.462 0.00 0.00 44.60 3.43
1891 1895 0.902531 TTTCGATGGTCCACTCCCTC 59.097 55.000 0.00 0.00 0.00 4.30
1906 1910 5.221541 CCACTCCCTCCATCACTAGTTAATC 60.222 48.000 0.00 0.00 0.00 1.75
1913 1917 7.093552 CCCTCCATCACTAGTTAATCTATCCAG 60.094 44.444 0.00 0.00 0.00 3.86
1917 1921 6.902771 TCACTAGTTAATCTATCCAGCCTC 57.097 41.667 0.00 0.00 0.00 4.70
1921 1925 5.975988 AGTTAATCTATCCAGCCTCCAAA 57.024 39.130 0.00 0.00 0.00 3.28
1922 1926 6.327386 AGTTAATCTATCCAGCCTCCAAAA 57.673 37.500 0.00 0.00 0.00 2.44
1923 1927 6.915786 AGTTAATCTATCCAGCCTCCAAAAT 58.084 36.000 0.00 0.00 0.00 1.82
1968 1972 5.772825 TCACTGGTTTGATTCCTTCTTTG 57.227 39.130 0.00 0.00 0.00 2.77
1970 1974 5.656416 TCACTGGTTTGATTCCTTCTTTGTT 59.344 36.000 0.00 0.00 0.00 2.83
1980 1984 2.031120 CCTTCTTTGTTGTCCTTGCCA 58.969 47.619 0.00 0.00 0.00 4.92
2007 2011 2.107950 TCCAATTAGACCTTGGTGCG 57.892 50.000 0.00 0.00 43.07 5.34
2055 2059 2.972348 ACTTTGTCCTCAGTACCAGGA 58.028 47.619 7.02 7.02 37.75 3.86
2147 2151 6.809630 AAATCTTCCAAGAAGCTTACAGAC 57.190 37.500 0.00 0.00 38.77 3.51
2162 2166 6.319152 AGCTTACAGACGTTGTATCTATCAGT 59.681 38.462 10.12 0.00 41.72 3.41
2202 2206 5.923204 ACCATACCTTCAGAGATAGCAAAG 58.077 41.667 0.00 0.00 0.00 2.77
2214 2218 3.519510 AGATAGCAAAGCTCACCAACCTA 59.480 43.478 0.00 0.00 40.44 3.08
2231 2235 5.588648 CCAACCTAACAGTTCTTCAACTTGA 59.411 40.000 0.00 0.00 41.24 3.02
2240 2244 5.049129 CAGTTCTTCAACTTGATGGGAACTC 60.049 44.000 20.47 6.97 41.24 3.01
2250 2254 2.225369 TGATGGGAACTCACTCTCTGGA 60.225 50.000 0.00 0.00 0.00 3.86
2252 2256 1.429299 TGGGAACTCACTCTCTGGAGA 59.571 52.381 0.20 0.20 41.86 3.71
2265 2269 2.095461 TCTGGAGAGATTCCTGACACG 58.905 52.381 0.00 0.00 45.76 4.49
2278 2282 0.109458 TGACACGATCGGAAACCTCG 60.109 55.000 20.98 0.00 37.84 4.63
2307 2311 3.558418 TGTTTCTTCTAGGTTTGTCACGC 59.442 43.478 0.00 0.00 0.00 5.34
2324 2328 2.851824 CACGCAACAAACTTTCTGGAAC 59.148 45.455 0.00 0.00 0.00 3.62
2337 2341 2.338809 TCTGGAACAATCCCACAGTCT 58.661 47.619 0.00 0.00 45.95 3.24
2343 2347 0.883833 CAATCCCACAGTCTGTTGGC 59.116 55.000 16.67 0.00 33.53 4.52
2368 2372 7.651704 GCAACTTTAAAAATCTTGGTGAGCTTA 59.348 33.333 0.00 0.00 0.00 3.09
2376 2380 8.729805 AAAATCTTGGTGAGCTTAATCTAGAG 57.270 34.615 0.00 0.00 0.00 2.43
2397 2401 3.815401 AGGAAAACAACTTGACTGGATCG 59.185 43.478 0.00 0.00 0.00 3.69
2481 2485 2.307153 TGGGAGTATTCCACCTGGC 58.693 57.895 6.61 0.00 29.79 4.85
2505 2509 5.188751 CCTCCTGTCTATTTCCACTCTTTCT 59.811 44.000 0.00 0.00 0.00 2.52
2563 2567 2.037641 TCCATACCATCTGAGATTGGCG 59.962 50.000 6.10 0.00 36.41 5.69
2583 2587 2.721603 CGGCTTGATTAATCTCGACTCG 59.278 50.000 16.24 8.89 0.00 4.18
2595 2599 9.692749 ATTAATCTCGACTCGCTTAATATTTCA 57.307 29.630 0.00 0.00 0.00 2.69
2803 2807 1.788258 TGACTCTTTGCAGCTTCTCG 58.212 50.000 0.00 0.00 0.00 4.04
2887 2891 5.699458 AGTAAGGTGTTCATACAAGGAAACG 59.301 40.000 0.00 0.00 35.69 3.60
2899 2903 5.880054 ACAAGGAAACGAGGATTTATGTG 57.120 39.130 0.00 0.00 0.00 3.21
2996 3000 3.327757 TCAATAGTTGTTCCTCTGGCTGT 59.672 43.478 0.00 0.00 0.00 4.40
3022 3026 5.582269 GCTGTTGTAGTTCTGATATCAGCAA 59.418 40.000 25.27 19.44 43.46 3.91
3072 3076 8.853126 AGAAATGAATTGAGAGAACACATTGAA 58.147 29.630 0.00 0.00 0.00 2.69
3192 3196 5.070446 TGGAGTGGTCTATAAAGGCATACTG 59.930 44.000 0.00 0.00 29.62 2.74
3627 3631 4.560716 GCAAAGTTTCTTGGTAACCATCCC 60.561 45.833 0.00 0.00 31.53 3.85
3628 3632 3.451402 AGTTTCTTGGTAACCATCCCC 57.549 47.619 0.00 0.00 31.53 4.81
3636 3640 1.037579 GTAACCATCCCCCAGCAAGC 61.038 60.000 0.00 0.00 0.00 4.01
3642 3646 0.033109 ATCCCCCAGCAAGCCTTAAC 60.033 55.000 0.00 0.00 0.00 2.01
3663 3667 9.093970 CTTAACGATTTGACAAGTATACATGGA 57.906 33.333 12.40 0.00 0.00 3.41
3678 3682 3.724478 ACATGGACCAAGAGGATCAGTA 58.276 45.455 3.17 0.00 37.82 2.74
3697 3701 5.012046 TCAGTAGGATATATTGCACCTGGTG 59.988 44.000 22.46 22.46 36.51 4.17
3701 3705 2.638480 TATATTGCACCTGGTGAGCC 57.362 50.000 30.23 13.10 35.23 4.70
3705 3709 0.823356 TTGCACCTGGTGAGCCTTTC 60.823 55.000 30.23 10.91 35.23 2.62
3750 3754 2.898181 TGAATACATGTGCTTGTGCG 57.102 45.000 9.11 0.00 43.34 5.34
3760 3764 2.202260 CTTGTGCGTGCATGAGCG 60.202 61.111 10.93 0.00 46.23 5.03
3773 3779 0.029300 ATGAGCGTGTGTGTGTTTGC 59.971 50.000 0.00 0.00 0.00 3.68
3779 3785 1.746991 TGTGTGTGTTTGCGCTGGA 60.747 52.632 9.73 0.00 0.00 3.86
3797 3803 4.944317 GCTGGAAATTAGTGCTACTCCTTT 59.056 41.667 0.00 0.00 0.00 3.11
3798 3804 5.416013 GCTGGAAATTAGTGCTACTCCTTTT 59.584 40.000 0.00 0.00 0.00 2.27
3799 3805 6.071896 GCTGGAAATTAGTGCTACTCCTTTTT 60.072 38.462 0.00 0.00 0.00 1.94
3801 3807 8.561738 TGGAAATTAGTGCTACTCCTTTTTAG 57.438 34.615 0.00 0.00 0.00 1.85
3802 3808 8.380099 TGGAAATTAGTGCTACTCCTTTTTAGA 58.620 33.333 0.00 0.00 0.00 2.10
3803 3809 9.227777 GGAAATTAGTGCTACTCCTTTTTAGAA 57.772 33.333 0.00 0.00 0.00 2.10
3807 3813 8.828688 TTAGTGCTACTCCTTTTTAGAAACTC 57.171 34.615 0.00 0.00 0.00 3.01
3810 3816 7.993758 AGTGCTACTCCTTTTTAGAAACTCTTT 59.006 33.333 0.00 0.00 0.00 2.52
3811 3817 8.070769 GTGCTACTCCTTTTTAGAAACTCTTTG 58.929 37.037 0.00 0.00 0.00 2.77
3815 3841 8.809468 ACTCCTTTTTAGAAACTCTTTGTTCT 57.191 30.769 0.00 0.00 38.03 3.01
3894 3923 8.083462 TCACATATAAATTGCAGAATACGGAC 57.917 34.615 0.00 0.00 0.00 4.79
3896 3925 8.011673 CACATATAAATTGCAGAATACGGACTG 58.988 37.037 0.00 0.00 37.22 3.51
3920 3949 5.507985 GGGTTATGAAATATCAACTGCAGGC 60.508 44.000 19.93 0.00 39.49 4.85
3923 3952 3.544684 TGAAATATCAACTGCAGGCGAT 58.455 40.909 19.93 19.99 30.99 4.58
3935 3964 1.866063 GCAGGCGATGTCTACAGCTAC 60.866 57.143 0.00 0.00 0.00 3.58
3980 4009 2.437281 CACAGGGAAGCATCCTACTGAT 59.563 50.000 17.67 3.49 45.77 2.90
3998 4027 7.389884 CCTACTGATGATATCTTCAACAATGGG 59.610 40.741 18.78 12.94 36.78 4.00
4022 4051 2.276732 ACCTTCACAGATTGGTGGTG 57.723 50.000 0.00 0.00 39.27 4.17
4036 4065 2.357517 GGTGTCTGCACTCCCACG 60.358 66.667 0.00 0.00 44.65 4.94
4042 4071 1.103803 TCTGCACTCCCACGAGATAC 58.896 55.000 0.00 0.00 38.52 2.24
4068 4097 4.389077 GTGACATTTTAGAGACCGGTCTTG 59.611 45.833 36.55 29.39 40.61 3.02
4083 4112 3.691118 CGGTCTTGTTCCACATGATGAAT 59.309 43.478 0.00 0.00 35.23 2.57
4092 4121 7.372714 TGTTCCACATGATGAATTTGAAGAAG 58.627 34.615 0.00 0.00 0.00 2.85
4096 4125 6.090358 CCACATGATGAATTTGAAGAAGCAAC 59.910 38.462 0.00 0.00 0.00 4.17
4107 4136 1.299089 GAAGCAACCCGCAACACAC 60.299 57.895 0.00 0.00 46.13 3.82
4178 4207 2.159099 GGCTAAACTGGGCCTAAAATGC 60.159 50.000 4.53 2.74 44.48 3.56
4237 4266 7.652105 GCAAGATGTTTATGCTGAAATCATCAT 59.348 33.333 17.61 5.24 37.44 2.45
4250 4279 6.788243 TGAAATCATCATGATCAAGGAAACG 58.212 36.000 4.86 0.00 35.76 3.60
4258 4287 4.223320 TGATCAAGGAAACGTTTTCAGC 57.777 40.909 21.14 4.36 0.00 4.26
4262 4291 5.759506 TCAAGGAAACGTTTTCAGCATTA 57.240 34.783 21.14 0.00 0.00 1.90
4265 4294 4.485163 AGGAAACGTTTTCAGCATTATGC 58.515 39.130 21.14 9.46 45.46 3.14
4283 4312 2.821546 TGCGGTTGAGGAAATAGATCG 58.178 47.619 0.00 0.00 0.00 3.69
4395 4425 2.505819 TCTTGGCTCCTGGTATTTCCTC 59.494 50.000 0.00 0.00 37.07 3.71
4398 4428 1.213296 GCTCCTGGTATTTCCTCCCA 58.787 55.000 0.00 0.00 37.07 4.37
4404 4434 4.077982 TCCTGGTATTTCCTCCCATCTAGT 60.078 45.833 0.00 0.00 37.07 2.57
4410 4440 3.491766 TTCCTCCCATCTAGTGTTCCT 57.508 47.619 0.00 0.00 0.00 3.36
4445 4485 6.721704 TCACTTCTAGATCACAGCACATAT 57.278 37.500 0.00 0.00 0.00 1.78
4446 4486 6.510536 TCACTTCTAGATCACAGCACATATG 58.489 40.000 0.00 0.00 0.00 1.78
4490 4532 0.893447 AAGATTTTCTGCTGGCTGCC 59.107 50.000 12.87 12.87 42.00 4.85
4491 4533 0.039326 AGATTTTCTGCTGGCTGCCT 59.961 50.000 21.03 0.00 42.00 4.75
4492 4534 0.893447 GATTTTCTGCTGGCTGCCTT 59.107 50.000 21.03 0.00 42.00 4.35
4534 4576 3.719268 AAAATTTGAAATGGAGGGGCC 57.281 42.857 0.00 0.00 37.10 5.80
4542 4584 2.611667 TGGAGGGGCCAAAAGCAA 59.388 55.556 4.39 0.00 45.87 3.91
4543 4585 1.158227 TGGAGGGGCCAAAAGCAAT 59.842 52.632 4.39 0.00 45.87 3.56
4544 4586 0.411452 TGGAGGGGCCAAAAGCAATA 59.589 50.000 4.39 0.00 45.87 1.90
4545 4587 1.008206 TGGAGGGGCCAAAAGCAATAT 59.992 47.619 4.39 0.00 45.87 1.28
4546 4588 2.118679 GGAGGGGCCAAAAGCAATATT 58.881 47.619 4.39 0.00 46.50 1.28
4547 4589 2.505407 GGAGGGGCCAAAAGCAATATTT 59.495 45.455 4.39 0.00 46.50 1.40
4548 4590 3.054434 GGAGGGGCCAAAAGCAATATTTT 60.054 43.478 4.39 0.00 46.50 1.82
4549 4591 4.163268 GGAGGGGCCAAAAGCAATATTTTA 59.837 41.667 4.39 0.00 46.50 1.52
4550 4592 5.163205 GGAGGGGCCAAAAGCAATATTTTAT 60.163 40.000 4.39 0.00 46.50 1.40
4551 4593 6.325993 AGGGGCCAAAAGCAATATTTTATT 57.674 33.333 4.39 0.00 46.50 1.40
4552 4594 6.356556 AGGGGCCAAAAGCAATATTTTATTC 58.643 36.000 4.39 0.00 46.50 1.75
4553 4595 6.158520 AGGGGCCAAAAGCAATATTTTATTCT 59.841 34.615 4.39 0.00 46.50 2.40
4554 4596 7.346960 AGGGGCCAAAAGCAATATTTTATTCTA 59.653 33.333 4.39 0.00 46.50 2.10
4555 4597 7.990314 GGGGCCAAAAGCAATATTTTATTCTAA 59.010 33.333 4.39 0.00 46.50 2.10
4556 4598 9.559732 GGGCCAAAAGCAATATTTTATTCTAAT 57.440 29.630 4.39 0.00 46.50 1.73
4565 4607 8.919661 GCAATATTTTATTCTAATCCAAGCAGC 58.080 33.333 0.00 0.00 0.00 5.25
4566 4608 9.415544 CAATATTTTATTCTAATCCAAGCAGCC 57.584 33.333 0.00 0.00 0.00 4.85
4567 4609 5.852282 TTTTATTCTAATCCAAGCAGCCC 57.148 39.130 0.00 0.00 0.00 5.19
4568 4610 2.371658 ATTCTAATCCAAGCAGCCCC 57.628 50.000 0.00 0.00 0.00 5.80
4569 4611 0.258774 TTCTAATCCAAGCAGCCCCC 59.741 55.000 0.00 0.00 0.00 5.40
4570 4612 0.918799 TCTAATCCAAGCAGCCCCCA 60.919 55.000 0.00 0.00 0.00 4.96
4571 4613 0.753111 CTAATCCAAGCAGCCCCCAC 60.753 60.000 0.00 0.00 0.00 4.61
4572 4614 2.550699 TAATCCAAGCAGCCCCCACG 62.551 60.000 0.00 0.00 0.00 4.94
4574 4616 4.974721 CCAAGCAGCCCCCACGTT 62.975 66.667 0.00 0.00 0.00 3.99
4575 4617 2.912025 CAAGCAGCCCCCACGTTT 60.912 61.111 0.00 0.00 0.00 3.60
4576 4618 2.123468 AAGCAGCCCCCACGTTTT 60.123 55.556 0.00 0.00 0.00 2.43
4577 4619 1.760480 AAGCAGCCCCCACGTTTTT 60.760 52.632 0.00 0.00 0.00 1.94
4596 4638 2.801077 TTTACTAAAGCTGGGGAGGC 57.199 50.000 0.00 0.00 0.00 4.70
4597 4639 0.916809 TTACTAAAGCTGGGGAGGCC 59.083 55.000 0.00 0.00 0.00 5.19
4598 4640 0.252974 TACTAAAGCTGGGGAGGCCA 60.253 55.000 5.01 0.00 0.00 5.36
4599 4641 0.921256 ACTAAAGCTGGGGAGGCCAT 60.921 55.000 5.01 0.00 0.00 4.40
4600 4642 0.466922 CTAAAGCTGGGGAGGCCATG 60.467 60.000 5.01 0.00 0.00 3.66
4601 4643 1.936767 TAAAGCTGGGGAGGCCATGG 61.937 60.000 7.63 7.63 0.00 3.66
4621 4663 3.720601 CCTGCTGGCCTGGCTGTA 61.721 66.667 19.68 10.36 0.00 2.74
4622 4664 2.124819 CTGCTGGCCTGGCTGTAG 60.125 66.667 19.68 15.77 0.00 2.74
4623 4665 4.415150 TGCTGGCCTGGCTGTAGC 62.415 66.667 25.31 25.31 41.14 3.58
4643 4685 4.659172 CGCCCCTGCCTGTTTGGA 62.659 66.667 0.00 0.00 38.35 3.53
4644 4686 2.991540 GCCCCTGCCTGTTTGGAC 60.992 66.667 0.00 0.00 38.35 4.02
4645 4687 2.283173 CCCCTGCCTGTTTGGACC 60.283 66.667 0.00 0.00 38.35 4.46
4646 4688 2.845345 CCCCTGCCTGTTTGGACCT 61.845 63.158 0.00 0.00 38.35 3.85
4647 4689 1.303643 CCCTGCCTGTTTGGACCTC 60.304 63.158 0.00 0.00 38.35 3.85
4648 4690 1.763770 CCTGCCTGTTTGGACCTCT 59.236 57.895 0.00 0.00 38.35 3.69
4649 4691 0.984230 CCTGCCTGTTTGGACCTCTA 59.016 55.000 0.00 0.00 38.35 2.43
4650 4692 1.561542 CCTGCCTGTTTGGACCTCTAT 59.438 52.381 0.00 0.00 38.35 1.98
4651 4693 2.771943 CCTGCCTGTTTGGACCTCTATA 59.228 50.000 0.00 0.00 38.35 1.31
4652 4694 3.392616 CCTGCCTGTTTGGACCTCTATAT 59.607 47.826 0.00 0.00 38.35 0.86
4653 4695 4.593206 CCTGCCTGTTTGGACCTCTATATA 59.407 45.833 0.00 0.00 38.35 0.86
4654 4696 5.279708 CCTGCCTGTTTGGACCTCTATATAG 60.280 48.000 3.10 3.10 38.35 1.31
4655 4697 5.216622 TGCCTGTTTGGACCTCTATATAGT 58.783 41.667 9.58 0.00 38.35 2.12
4656 4698 6.378745 TGCCTGTTTGGACCTCTATATAGTA 58.621 40.000 9.58 0.00 38.35 1.82
4657 4699 6.842280 TGCCTGTTTGGACCTCTATATAGTAA 59.158 38.462 9.58 0.00 38.35 2.24
4658 4700 7.512746 TGCCTGTTTGGACCTCTATATAGTAAT 59.487 37.037 9.58 0.00 38.35 1.89
4659 4701 8.376270 GCCTGTTTGGACCTCTATATAGTAATT 58.624 37.037 9.58 0.00 38.35 1.40
4684 4726 8.948631 TTAGAGACCTAAATCTAAATGTGCAG 57.051 34.615 0.00 0.00 35.59 4.41
4685 4727 6.951971 AGAGACCTAAATCTAAATGTGCAGT 58.048 36.000 0.00 0.00 0.00 4.40
4686 4728 7.398024 AGAGACCTAAATCTAAATGTGCAGTT 58.602 34.615 0.00 0.00 0.00 3.16
4687 4729 7.885399 AGAGACCTAAATCTAAATGTGCAGTTT 59.115 33.333 0.00 0.00 0.00 2.66
4688 4730 8.045176 AGACCTAAATCTAAATGTGCAGTTTC 57.955 34.615 0.59 0.00 0.00 2.78
4689 4731 7.665559 AGACCTAAATCTAAATGTGCAGTTTCA 59.334 33.333 0.59 0.00 0.00 2.69
4690 4732 8.177119 ACCTAAATCTAAATGTGCAGTTTCAA 57.823 30.769 0.59 0.00 0.00 2.69
4691 4733 8.299570 ACCTAAATCTAAATGTGCAGTTTCAAG 58.700 33.333 0.59 0.00 0.00 3.02
4692 4734 8.299570 CCTAAATCTAAATGTGCAGTTTCAAGT 58.700 33.333 0.59 0.00 0.00 3.16
4693 4735 9.683069 CTAAATCTAAATGTGCAGTTTCAAGTT 57.317 29.630 0.59 0.66 0.00 2.66
4694 4736 8.579682 AAATCTAAATGTGCAGTTTCAAGTTC 57.420 30.769 0.59 0.00 0.00 3.01
4695 4737 6.691754 TCTAAATGTGCAGTTTCAAGTTCA 57.308 33.333 0.59 0.00 0.00 3.18
4696 4738 6.728200 TCTAAATGTGCAGTTTCAAGTTCAG 58.272 36.000 0.59 0.00 0.00 3.02
4697 4739 4.989279 AATGTGCAGTTTCAAGTTCAGT 57.011 36.364 0.00 0.00 0.00 3.41
4698 4740 4.989279 ATGTGCAGTTTCAAGTTCAGTT 57.011 36.364 0.00 0.00 0.00 3.16
4699 4741 6.449635 AATGTGCAGTTTCAAGTTCAGTTA 57.550 33.333 0.00 0.00 0.00 2.24
4700 4742 5.229921 TGTGCAGTTTCAAGTTCAGTTAC 57.770 39.130 0.00 0.00 0.00 2.50
4701 4743 4.095782 TGTGCAGTTTCAAGTTCAGTTACC 59.904 41.667 0.00 0.00 0.00 2.85
4702 4744 3.630312 TGCAGTTTCAAGTTCAGTTACCC 59.370 43.478 0.00 0.00 0.00 3.69
4703 4745 3.630312 GCAGTTTCAAGTTCAGTTACCCA 59.370 43.478 0.00 0.00 0.00 4.51
4704 4746 4.097286 GCAGTTTCAAGTTCAGTTACCCAA 59.903 41.667 0.00 0.00 0.00 4.12
4705 4747 5.393678 GCAGTTTCAAGTTCAGTTACCCAAA 60.394 40.000 0.00 0.00 0.00 3.28
4706 4748 6.682861 GCAGTTTCAAGTTCAGTTACCCAAAT 60.683 38.462 0.00 0.00 0.00 2.32
4707 4749 6.697019 CAGTTTCAAGTTCAGTTACCCAAATG 59.303 38.462 0.00 0.00 0.00 2.32
4708 4750 6.605594 AGTTTCAAGTTCAGTTACCCAAATGA 59.394 34.615 0.00 0.00 36.99 2.57
4709 4751 6.385649 TTCAAGTTCAGTTACCCAAATGAC 57.614 37.500 0.00 0.00 38.40 3.06
4710 4752 5.441500 TCAAGTTCAGTTACCCAAATGACA 58.558 37.500 0.00 0.00 38.40 3.58
4711 4753 5.298276 TCAAGTTCAGTTACCCAAATGACAC 59.702 40.000 0.00 0.00 38.40 3.67
4712 4754 4.787551 AGTTCAGTTACCCAAATGACACA 58.212 39.130 0.00 0.00 38.40 3.72
4713 4755 5.385198 AGTTCAGTTACCCAAATGACACAT 58.615 37.500 0.00 0.00 38.40 3.21
4714 4756 5.473504 AGTTCAGTTACCCAAATGACACATC 59.526 40.000 0.00 0.00 38.40 3.06
4715 4757 4.331968 TCAGTTACCCAAATGACACATCC 58.668 43.478 0.00 0.00 34.02 3.51
4716 4758 4.078537 CAGTTACCCAAATGACACATCCA 58.921 43.478 0.00 0.00 31.35 3.41
4717 4759 4.706476 CAGTTACCCAAATGACACATCCAT 59.294 41.667 0.00 0.00 31.35 3.41
4718 4760 4.706476 AGTTACCCAAATGACACATCCATG 59.294 41.667 0.00 0.00 0.00 3.66
4719 4761 3.173953 ACCCAAATGACACATCCATGT 57.826 42.857 0.00 0.00 42.84 3.21
4720 4762 4.314522 ACCCAAATGACACATCCATGTA 57.685 40.909 0.00 0.00 39.39 2.29
4721 4763 4.870636 ACCCAAATGACACATCCATGTAT 58.129 39.130 0.00 0.00 39.39 2.29
4722 4764 4.646040 ACCCAAATGACACATCCATGTATG 59.354 41.667 0.00 0.00 39.39 2.39
4723 4765 4.646040 CCCAAATGACACATCCATGTATGT 59.354 41.667 0.00 0.00 40.75 2.29
4724 4766 5.127519 CCCAAATGACACATCCATGTATGTT 59.872 40.000 0.39 0.00 38.01 2.71
4725 4767 6.320926 CCCAAATGACACATCCATGTATGTTA 59.679 38.462 0.39 0.00 38.01 2.41
4726 4768 7.147932 CCCAAATGACACATCCATGTATGTTAA 60.148 37.037 0.39 0.00 38.01 2.01
4727 4769 7.916977 CCAAATGACACATCCATGTATGTTAAG 59.083 37.037 0.39 0.00 38.01 1.85
4728 4770 7.572523 AATGACACATCCATGTATGTTAAGG 57.427 36.000 0.39 0.00 38.01 2.69
4729 4771 5.436175 TGACACATCCATGTATGTTAAGGG 58.564 41.667 0.39 0.00 38.01 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.860918 TCTAGAGCTAGTTCTCAAACGATAA 57.139 36.000 12.89 0.00 40.48 1.75
1 2 9.210329 CTATCTAGAGCTAGTTCTCAAACGATA 57.790 37.037 12.89 10.76 40.48 2.92
2 3 6.952773 ATCTAGAGCTAGTTCTCAAACGAT 57.047 37.500 12.89 6.04 40.48 3.73
3 4 6.017770 GCTATCTAGAGCTAGTTCTCAAACGA 60.018 42.308 12.89 4.09 38.69 3.85
4 5 6.140110 GCTATCTAGAGCTAGTTCTCAAACG 58.860 44.000 12.89 2.13 38.69 3.60
17 18 3.257873 TGCATCTCCAAGCTATCTAGAGC 59.742 47.826 0.00 0.00 43.19 4.09
18 19 5.664294 ATGCATCTCCAAGCTATCTAGAG 57.336 43.478 0.00 0.00 0.00 2.43
19 20 6.894103 TGATATGCATCTCCAAGCTATCTAGA 59.106 38.462 0.19 0.00 31.93 2.43
20 21 7.110043 TGATATGCATCTCCAAGCTATCTAG 57.890 40.000 0.19 0.00 31.93 2.43
21 22 7.672122 ATGATATGCATCTCCAAGCTATCTA 57.328 36.000 0.19 0.00 28.85 1.98
22 23 6.563037 ATGATATGCATCTCCAAGCTATCT 57.437 37.500 0.19 0.00 28.85 1.98
23 24 8.148999 TGATATGATATGCATCTCCAAGCTATC 58.851 37.037 0.19 5.50 38.44 2.08
24 25 8.030913 TGATATGATATGCATCTCCAAGCTAT 57.969 34.615 0.19 0.00 38.44 2.97
25 26 7.427989 TGATATGATATGCATCTCCAAGCTA 57.572 36.000 0.19 0.00 38.44 3.32
26 27 6.309389 TGATATGATATGCATCTCCAAGCT 57.691 37.500 0.19 0.00 38.44 3.74
27 28 6.997239 TTGATATGATATGCATCTCCAAGC 57.003 37.500 0.19 0.00 38.44 4.01
28 29 8.613482 GTGATTGATATGATATGCATCTCCAAG 58.387 37.037 0.19 0.00 38.44 3.61
29 30 8.104566 TGTGATTGATATGATATGCATCTCCAA 58.895 33.333 0.19 3.28 38.44 3.53
30 31 7.626390 TGTGATTGATATGATATGCATCTCCA 58.374 34.615 0.19 0.00 38.44 3.86
31 32 8.502105 TTGTGATTGATATGATATGCATCTCC 57.498 34.615 0.19 0.00 38.44 3.71
32 33 9.770503 GTTTGTGATTGATATGATATGCATCTC 57.229 33.333 0.19 3.24 38.44 2.75
33 34 9.292195 TGTTTGTGATTGATATGATATGCATCT 57.708 29.630 0.19 0.00 38.44 2.90
34 35 9.902196 TTGTTTGTGATTGATATGATATGCATC 57.098 29.630 0.19 0.00 38.44 3.91
35 36 9.908152 CTTGTTTGTGATTGATATGATATGCAT 57.092 29.630 3.79 3.79 41.08 3.96
36 37 9.122779 TCTTGTTTGTGATTGATATGATATGCA 57.877 29.630 0.00 0.00 0.00 3.96
37 38 9.390795 GTCTTGTTTGTGATTGATATGATATGC 57.609 33.333 0.00 0.00 0.00 3.14
38 39 9.590088 CGTCTTGTTTGTGATTGATATGATATG 57.410 33.333 0.00 0.00 0.00 1.78
39 40 8.285394 GCGTCTTGTTTGTGATTGATATGATAT 58.715 33.333 0.00 0.00 0.00 1.63
40 41 7.495606 AGCGTCTTGTTTGTGATTGATATGATA 59.504 33.333 0.00 0.00 0.00 2.15
41 42 6.317140 AGCGTCTTGTTTGTGATTGATATGAT 59.683 34.615 0.00 0.00 0.00 2.45
42 43 5.643348 AGCGTCTTGTTTGTGATTGATATGA 59.357 36.000 0.00 0.00 0.00 2.15
43 44 5.872635 AGCGTCTTGTTTGTGATTGATATG 58.127 37.500 0.00 0.00 0.00 1.78
44 45 5.220472 CGAGCGTCTTGTTTGTGATTGATAT 60.220 40.000 0.00 0.00 0.00 1.63
45 46 4.091365 CGAGCGTCTTGTTTGTGATTGATA 59.909 41.667 0.00 0.00 0.00 2.15
46 47 3.120546 CGAGCGTCTTGTTTGTGATTGAT 60.121 43.478 0.00 0.00 0.00 2.57
47 48 2.220824 CGAGCGTCTTGTTTGTGATTGA 59.779 45.455 0.00 0.00 0.00 2.57
48 49 2.563976 CGAGCGTCTTGTTTGTGATTG 58.436 47.619 0.00 0.00 0.00 2.67
49 50 1.069906 GCGAGCGTCTTGTTTGTGATT 60.070 47.619 0.00 0.00 0.00 2.57
50 51 0.512952 GCGAGCGTCTTGTTTGTGAT 59.487 50.000 0.00 0.00 0.00 3.06
51 52 0.529773 AGCGAGCGTCTTGTTTGTGA 60.530 50.000 0.00 0.00 0.00 3.58
52 53 0.304705 AAGCGAGCGTCTTGTTTGTG 59.695 50.000 0.00 0.00 0.00 3.33
53 54 0.582005 GAAGCGAGCGTCTTGTTTGT 59.418 50.000 3.85 0.00 0.00 2.83
54 55 0.861837 AGAAGCGAGCGTCTTGTTTG 59.138 50.000 7.68 0.00 31.00 2.93
55 56 2.059541 GTAGAAGCGAGCGTCTTGTTT 58.940 47.619 17.63 0.00 36.31 2.83
56 57 1.269998 AGTAGAAGCGAGCGTCTTGTT 59.730 47.619 17.63 3.05 36.31 2.83
57 58 0.882474 AGTAGAAGCGAGCGTCTTGT 59.118 50.000 17.63 7.78 36.31 3.16
58 59 1.131504 AGAGTAGAAGCGAGCGTCTTG 59.868 52.381 17.63 0.00 36.31 3.02
59 60 1.399089 GAGAGTAGAAGCGAGCGTCTT 59.601 52.381 17.63 6.74 36.31 3.01
60 61 1.011333 GAGAGTAGAAGCGAGCGTCT 58.989 55.000 16.75 16.75 38.29 4.18
61 62 0.727970 TGAGAGTAGAAGCGAGCGTC 59.272 55.000 2.86 2.86 0.00 5.19
62 63 1.135632 GTTGAGAGTAGAAGCGAGCGT 60.136 52.381 0.00 0.00 0.00 5.07
63 64 1.131504 AGTTGAGAGTAGAAGCGAGCG 59.868 52.381 0.00 0.00 0.00 5.03
64 65 2.931512 AGTTGAGAGTAGAAGCGAGC 57.068 50.000 0.00 0.00 0.00 5.03
65 66 7.360861 CCAGATATAGTTGAGAGTAGAAGCGAG 60.361 44.444 0.00 0.00 0.00 5.03
66 67 6.428465 CCAGATATAGTTGAGAGTAGAAGCGA 59.572 42.308 0.00 0.00 0.00 4.93
67 68 6.607689 CCAGATATAGTTGAGAGTAGAAGCG 58.392 44.000 0.00 0.00 0.00 4.68
68 69 6.386654 GCCAGATATAGTTGAGAGTAGAAGC 58.613 44.000 0.00 0.00 0.00 3.86
69 70 6.348950 CGGCCAGATATAGTTGAGAGTAGAAG 60.349 46.154 2.24 0.00 0.00 2.85
70 71 5.473846 CGGCCAGATATAGTTGAGAGTAGAA 59.526 44.000 2.24 0.00 0.00 2.10
71 72 5.004448 CGGCCAGATATAGTTGAGAGTAGA 58.996 45.833 2.24 0.00 0.00 2.59
72 73 4.762765 ACGGCCAGATATAGTTGAGAGTAG 59.237 45.833 2.24 0.00 0.00 2.57
73 74 4.519350 CACGGCCAGATATAGTTGAGAGTA 59.481 45.833 2.24 0.00 0.00 2.59
74 75 3.319405 CACGGCCAGATATAGTTGAGAGT 59.681 47.826 2.24 0.00 0.00 3.24
75 76 3.305676 CCACGGCCAGATATAGTTGAGAG 60.306 52.174 2.24 0.00 0.00 3.20
76 77 2.628178 CCACGGCCAGATATAGTTGAGA 59.372 50.000 2.24 0.00 0.00 3.27
77 78 2.289072 CCCACGGCCAGATATAGTTGAG 60.289 54.545 2.24 0.00 0.00 3.02
78 79 1.691976 CCCACGGCCAGATATAGTTGA 59.308 52.381 2.24 0.00 0.00 3.18
79 80 1.878102 GCCCACGGCCAGATATAGTTG 60.878 57.143 2.24 0.00 44.06 3.16
80 81 0.396811 GCCCACGGCCAGATATAGTT 59.603 55.000 2.24 0.00 44.06 2.24
81 82 2.058675 GCCCACGGCCAGATATAGT 58.941 57.895 2.24 0.00 44.06 2.12
113 114 1.627864 TTTTTAGGCCTGGTCCAAGC 58.372 50.000 17.99 3.62 0.00 4.01
129 130 2.758423 AGTTTTCTGTCGTGGGCTTTTT 59.242 40.909 0.00 0.00 0.00 1.94
130 131 2.099098 CAGTTTTCTGTCGTGGGCTTTT 59.901 45.455 0.00 0.00 42.48 2.27
131 132 1.676006 CAGTTTTCTGTCGTGGGCTTT 59.324 47.619 0.00 0.00 42.48 3.51
132 133 1.134220 TCAGTTTTCTGTCGTGGGCTT 60.134 47.619 0.00 0.00 46.98 4.35
133 134 0.468226 TCAGTTTTCTGTCGTGGGCT 59.532 50.000 0.00 0.00 46.98 5.19
134 135 0.868406 CTCAGTTTTCTGTCGTGGGC 59.132 55.000 0.00 0.00 46.98 5.36
135 136 1.512926 CCTCAGTTTTCTGTCGTGGG 58.487 55.000 0.00 0.00 46.98 4.61
136 137 0.868406 GCCTCAGTTTTCTGTCGTGG 59.132 55.000 0.00 0.00 46.98 4.94
137 138 0.868406 GGCCTCAGTTTTCTGTCGTG 59.132 55.000 0.00 0.00 46.98 4.35
138 139 0.250338 GGGCCTCAGTTTTCTGTCGT 60.250 55.000 0.84 0.00 46.98 4.34
139 140 0.250295 TGGGCCTCAGTTTTCTGTCG 60.250 55.000 4.53 0.00 46.98 4.35
140 141 1.528129 CTGGGCCTCAGTTTTCTGTC 58.472 55.000 4.53 0.00 46.98 3.51
141 142 0.111253 CCTGGGCCTCAGTTTTCTGT 59.889 55.000 16.96 0.00 46.98 3.41
142 143 1.246737 GCCTGGGCCTCAGTTTTCTG 61.247 60.000 16.96 5.05 41.83 3.02
143 144 1.075659 GCCTGGGCCTCAGTTTTCT 59.924 57.895 16.96 0.00 41.83 2.52
144 145 3.686760 GCCTGGGCCTCAGTTTTC 58.313 61.111 16.96 3.57 41.83 2.29
154 155 4.256180 CGATGGTAGGGCCTGGGC 62.256 72.222 18.53 12.58 38.35 5.36
155 156 3.560251 CCGATGGTAGGGCCTGGG 61.560 72.222 18.53 3.75 38.35 4.45
156 157 3.560251 CCCGATGGTAGGGCCTGG 61.560 72.222 18.53 7.41 42.77 4.45
162 163 3.203716 GAAAAGTAAGCCCGATGGTAGG 58.796 50.000 0.00 0.00 0.00 3.18
163 164 3.869065 TGAAAAGTAAGCCCGATGGTAG 58.131 45.455 0.00 0.00 0.00 3.18
164 165 3.985019 TGAAAAGTAAGCCCGATGGTA 57.015 42.857 0.00 0.00 0.00 3.25
165 166 2.871096 TGAAAAGTAAGCCCGATGGT 57.129 45.000 0.00 0.00 0.00 3.55
166 167 3.764885 CTTGAAAAGTAAGCCCGATGG 57.235 47.619 0.00 0.00 39.70 3.51
189 190 3.151710 CCACATGGGCCAGGCATG 61.152 66.667 19.71 16.32 0.00 4.06
190 191 3.667217 GACCACATGGGCCAGGCAT 62.667 63.158 19.71 3.24 42.05 4.40
191 192 4.365111 GACCACATGGGCCAGGCA 62.365 66.667 19.71 0.00 42.05 4.75
192 193 3.884704 TTGACCACATGGGCCAGGC 62.885 63.158 19.71 1.26 44.80 4.85
193 194 0.831288 TTTTGACCACATGGGCCAGG 60.831 55.000 18.06 18.06 44.80 4.45
194 195 0.604578 CTTTTGACCACATGGGCCAG 59.395 55.000 13.78 6.92 44.80 4.85
195 196 1.470996 GCTTTTGACCACATGGGCCA 61.471 55.000 9.61 9.61 44.80 5.36
196 197 1.293179 GCTTTTGACCACATGGGCC 59.707 57.895 0.00 0.00 44.80 5.80
197 198 1.293179 GGCTTTTGACCACATGGGC 59.707 57.895 2.32 0.00 45.93 5.36
206 207 1.270305 GGGCTTTTGAGGGCTTTTGAC 60.270 52.381 0.00 0.00 0.00 3.18
207 208 1.047801 GGGCTTTTGAGGGCTTTTGA 58.952 50.000 0.00 0.00 0.00 2.69
208 209 1.051008 AGGGCTTTTGAGGGCTTTTG 58.949 50.000 0.00 0.00 0.00 2.44
209 210 1.806496 AAGGGCTTTTGAGGGCTTTT 58.194 45.000 0.00 0.00 0.00 2.27
210 211 2.529632 CTAAGGGCTTTTGAGGGCTTT 58.470 47.619 0.00 0.00 33.62 3.51
211 212 1.272704 CCTAAGGGCTTTTGAGGGCTT 60.273 52.381 0.00 0.00 0.00 4.35
212 213 0.332972 CCTAAGGGCTTTTGAGGGCT 59.667 55.000 0.00 0.00 0.00 5.19
213 214 0.684479 CCCTAAGGGCTTTTGAGGGC 60.684 60.000 4.44 0.00 40.53 5.19
214 215 3.596362 CCCTAAGGGCTTTTGAGGG 57.404 57.895 3.08 3.08 41.02 4.30
243 244 3.935456 TAAGGAAGAGCCCGGCCCA 62.935 63.158 5.55 0.00 37.37 5.36
244 245 2.206182 TTTAAGGAAGAGCCCGGCCC 62.206 60.000 5.55 0.00 37.37 5.80
245 246 0.323087 TTTTAAGGAAGAGCCCGGCC 60.323 55.000 5.55 0.00 37.37 6.13
246 247 1.405463 CATTTTAAGGAAGAGCCCGGC 59.595 52.381 0.00 0.00 37.37 6.13
247 248 1.405463 GCATTTTAAGGAAGAGCCCGG 59.595 52.381 0.00 0.00 37.37 5.73
248 249 2.369394 AGCATTTTAAGGAAGAGCCCG 58.631 47.619 0.00 0.00 37.37 6.13
249 250 5.737349 GCATTAGCATTTTAAGGAAGAGCCC 60.737 44.000 0.00 0.00 41.58 5.19
250 251 5.284864 GCATTAGCATTTTAAGGAAGAGCC 58.715 41.667 0.00 0.00 41.58 4.70
266 267 3.567164 ACAGCTTGACCATATGCATTAGC 59.433 43.478 3.54 3.85 42.57 3.09
331 332 1.134037 ACGCCACTTGTTTTGACCCTA 60.134 47.619 0.00 0.00 0.00 3.53
427 428 6.554334 TTGAAATCTGCCGGTATTTATAGC 57.446 37.500 1.90 0.00 0.00 2.97
469 470 7.016153 TGGTAGATGTTAGGAGATTTGTGTT 57.984 36.000 0.00 0.00 0.00 3.32
478 479 5.069119 TGTGTATGCTGGTAGATGTTAGGAG 59.931 44.000 0.00 0.00 0.00 3.69
479 480 4.959839 TGTGTATGCTGGTAGATGTTAGGA 59.040 41.667 0.00 0.00 0.00 2.94
481 482 6.573434 TCTTGTGTATGCTGGTAGATGTTAG 58.427 40.000 0.00 0.00 0.00 2.34
491 492 2.019249 CACCCATCTTGTGTATGCTGG 58.981 52.381 0.00 0.00 0.00 4.85
502 503 2.769095 GAGCTCCTACTTCACCCATCTT 59.231 50.000 0.87 0.00 0.00 2.40
532 533 2.035421 CAGCAAGAAGTGGCAGCAA 58.965 52.632 0.00 0.00 0.00 3.91
542 543 0.518636 GATGAGCGTTGCAGCAAGAA 59.481 50.000 8.49 0.00 40.15 2.52
621 622 1.416401 ACATGCCTATCGGTTTCGGAT 59.584 47.619 0.00 0.00 36.95 4.18
641 642 3.035363 TGTGACCTTAGACACAACAGGA 58.965 45.455 8.97 0.00 43.96 3.86
660 661 1.915769 GGCAGGGTCAGAGAGGTGT 60.916 63.158 0.00 0.00 0.00 4.16
678 679 2.625314 TCTCCATGAGTCTAATGCTCCG 59.375 50.000 0.00 0.00 32.31 4.63
679 680 4.679373 TTCTCCATGAGTCTAATGCTCC 57.321 45.455 0.00 0.00 32.31 4.70
680 681 6.286758 TCATTTCTCCATGAGTCTAATGCTC 58.713 40.000 0.00 0.00 31.42 4.26
681 682 6.244552 TCATTTCTCCATGAGTCTAATGCT 57.755 37.500 0.00 0.00 31.42 3.79
682 683 6.542574 CTCATTTCTCCATGAGTCTAATGC 57.457 41.667 0.00 0.00 43.67 3.56
691 692 3.873361 GCGAATGACTCATTTCTCCATGA 59.127 43.478 5.73 0.00 33.90 3.07
692 693 3.302935 CGCGAATGACTCATTTCTCCATG 60.303 47.826 0.00 0.00 33.90 3.66
693 694 2.868583 CGCGAATGACTCATTTCTCCAT 59.131 45.455 0.00 0.00 33.90 3.41
702 703 1.000717 TCACAGAACGCGAATGACTCA 60.001 47.619 15.93 0.00 0.00 3.41
711 712 2.096406 CGCCAATCACAGAACGCG 59.904 61.111 3.53 3.53 0.00 6.01
712 713 1.421485 CTCGCCAATCACAGAACGC 59.579 57.895 0.00 0.00 0.00 4.84
775 776 6.253746 CGGTGATGTTCAAAGAATCAAGATC 58.746 40.000 0.00 0.00 32.38 2.75
845 846 0.184692 TTGGTTGTCTGCCATGTGGA 59.815 50.000 2.55 0.00 35.71 4.02
968 969 3.313874 CCTCGAGGAGGGTGCATT 58.686 61.111 28.21 0.00 45.43 3.56
1891 1895 6.212388 AGGCTGGATAGATTAACTAGTGATGG 59.788 42.308 0.00 0.00 34.35 3.51
1906 1910 4.785301 TCAAGATTTTGGAGGCTGGATAG 58.215 43.478 0.00 0.00 34.97 2.08
1913 1917 1.747924 GGAGCTCAAGATTTTGGAGGC 59.252 52.381 17.19 0.00 34.97 4.70
1917 1921 2.426522 TCACGGAGCTCAAGATTTTGG 58.573 47.619 17.19 0.00 34.97 3.28
1921 1925 3.812053 GCATTATCACGGAGCTCAAGATT 59.188 43.478 17.19 0.00 0.00 2.40
1922 1926 3.181462 TGCATTATCACGGAGCTCAAGAT 60.181 43.478 17.19 16.41 0.00 2.40
1923 1927 2.168313 TGCATTATCACGGAGCTCAAGA 59.832 45.455 17.19 10.17 0.00 3.02
1968 1972 3.552890 GGATCAAGTTTGGCAAGGACAAC 60.553 47.826 0.00 0.00 26.20 3.32
1970 1974 2.238521 GGATCAAGTTTGGCAAGGACA 58.761 47.619 0.00 0.00 0.00 4.02
2007 2011 1.544691 TCTACAGCCTCGAACTGGTTC 59.455 52.381 16.91 3.62 39.55 3.62
2076 2080 7.230108 CCATGAAGCTTGTTGTTATCCAGATAT 59.770 37.037 2.10 0.00 0.00 1.63
2162 2166 6.445786 AGGTATGGTCCCAGTAAATCTGTTTA 59.554 38.462 0.00 0.00 42.19 2.01
2202 2206 3.127425 AGAACTGTTAGGTTGGTGAGC 57.873 47.619 0.00 0.00 0.00 4.26
2214 2218 4.792068 TCCCATCAAGTTGAAGAACTGTT 58.208 39.130 10.14 0.00 41.87 3.16
2231 2235 2.043664 TCTCCAGAGAGTGAGTTCCCAT 59.956 50.000 0.00 0.00 41.26 4.00
2250 2254 1.678627 CCGATCGTGTCAGGAATCTCT 59.321 52.381 15.09 0.00 0.00 3.10
2252 2256 1.763968 TCCGATCGTGTCAGGAATCT 58.236 50.000 15.09 0.00 30.25 2.40
2265 2269 2.924290 CAAGTTCTCGAGGTTTCCGATC 59.076 50.000 13.56 0.00 35.35 3.69
2278 2282 7.280205 TGACAAACCTAGAAGAAACAAGTTCTC 59.720 37.037 0.00 0.00 46.36 2.87
2307 2311 5.049828 GGGATTGTTCCAGAAAGTTTGTTG 58.950 41.667 0.00 0.00 44.60 3.33
2324 2328 0.883833 GCCAACAGACTGTGGGATTG 59.116 55.000 30.17 14.26 44.46 2.67
2337 2341 6.314896 CACCAAGATTTTTAAAGTTGCCAACA 59.685 34.615 10.69 0.00 0.00 3.33
2343 2347 9.528018 TTAAGCTCACCAAGATTTTTAAAGTTG 57.472 29.630 0.00 0.00 34.79 3.16
2368 2372 6.712547 CCAGTCAAGTTGTTTTCCTCTAGATT 59.287 38.462 2.11 0.00 0.00 2.40
2373 2377 4.503714 TCCAGTCAAGTTGTTTTCCTCT 57.496 40.909 2.11 0.00 0.00 3.69
2376 2380 3.813166 TCGATCCAGTCAAGTTGTTTTCC 59.187 43.478 2.11 0.00 0.00 3.13
2397 2401 4.808364 CAGTCTGCTAAGCTTGAAGGTATC 59.192 45.833 9.86 0.00 0.00 2.24
2481 2485 5.188751 AGAAAGAGTGGAAATAGACAGGAGG 59.811 44.000 0.00 0.00 0.00 4.30
2563 2567 2.473235 GCGAGTCGAGATTAATCAAGCC 59.527 50.000 18.61 1.09 0.00 4.35
2595 2599 7.340487 GGAATCTCTCCAGATAATTGGTTGTTT 59.660 37.037 0.00 0.00 44.67 2.83
2803 2807 5.335976 CCTCAAGGCTGTTAAAGGACAAATC 60.336 44.000 0.00 0.00 0.00 2.17
2850 2854 8.001881 TGAACACCTTACTTGAATTGCTAAAA 57.998 30.769 0.00 0.00 0.00 1.52
2887 2891 3.879892 GGAGACCTTGCACATAAATCCTC 59.120 47.826 0.00 0.00 0.00 3.71
2899 2903 1.522580 GGAGCATCGGAGACCTTGC 60.523 63.158 0.00 0.00 42.51 4.01
2967 2971 7.446625 GCCAGAGGAACAACTATTGATATGATT 59.553 37.037 0.00 0.00 0.00 2.57
2996 3000 5.582269 GCTGATATCAGAACTACAACAGCAA 59.418 40.000 32.38 0.00 46.59 3.91
3057 3061 5.991328 TTGACTGTTCAATGTGTTCTCTC 57.009 39.130 0.00 0.00 36.79 3.20
3072 3076 5.296151 TCTTGAACTCCTTGATTGACTGT 57.704 39.130 0.00 0.00 0.00 3.55
3192 3196 0.595095 CTGGCTGCACCTGAAACTTC 59.405 55.000 0.50 0.00 39.72 3.01
3573 3577 4.005650 AGTCACTAACATGAGCAACCATG 58.994 43.478 0.00 10.82 46.90 3.66
3627 3631 1.463674 AATCGTTAAGGCTTGCTGGG 58.536 50.000 10.69 0.00 0.00 4.45
3628 3632 2.487762 TCAAATCGTTAAGGCTTGCTGG 59.512 45.455 10.69 0.00 0.00 4.85
3636 3640 8.335356 CCATGTATACTTGTCAAATCGTTAAGG 58.665 37.037 15.41 0.00 0.00 2.69
3642 3646 5.815222 TGGTCCATGTATACTTGTCAAATCG 59.185 40.000 15.41 1.70 0.00 3.34
3663 3667 7.093112 GCAATATATCCTACTGATCCTCTTGGT 60.093 40.741 0.00 0.00 34.76 3.67
3678 3682 3.244700 GCTCACCAGGTGCAATATATCCT 60.245 47.826 15.64 0.00 36.06 3.24
3723 3727 7.967854 GCACAAGCACATGTATTCAACTAATAA 59.032 33.333 0.00 0.00 41.58 1.40
3727 3731 4.142924 CGCACAAGCACATGTATTCAACTA 60.143 41.667 0.00 0.00 42.27 2.24
3738 3742 1.081041 CATGCACGCACAAGCACAT 60.081 52.632 0.00 0.00 44.49 3.21
3741 3745 2.948323 CTCATGCACGCACAAGCA 59.052 55.556 0.00 0.00 45.92 3.91
3750 3754 1.082561 CACACACACGCTCATGCAC 60.083 57.895 0.00 0.00 39.64 4.57
3760 3764 1.586042 CCAGCGCAAACACACACAC 60.586 57.895 11.47 0.00 0.00 3.82
3773 3779 2.866762 GGAGTAGCACTAATTTCCAGCG 59.133 50.000 0.00 0.00 0.00 5.18
3848 3874 9.996554 ATGTGATATGAAACGGATTAGTATTCA 57.003 29.630 0.00 0.00 34.80 2.57
3876 3905 4.196193 CCCAGTCCGTATTCTGCAATTTA 58.804 43.478 0.00 0.00 0.00 1.40
3877 3906 3.016736 CCCAGTCCGTATTCTGCAATTT 58.983 45.455 0.00 0.00 0.00 1.82
3894 3923 6.238842 CCTGCAGTTGATATTTCATAACCCAG 60.239 42.308 13.81 0.00 0.00 4.45
3896 3925 5.507985 GCCTGCAGTTGATATTTCATAACCC 60.508 44.000 13.81 0.00 0.00 4.11
3920 3949 4.485024 AATACCGTAGCTGTAGACATCG 57.515 45.455 0.00 0.00 0.00 3.84
3923 3952 6.514541 GCAGAATAATACCGTAGCTGTAGACA 60.515 42.308 0.00 0.00 0.00 3.41
3935 3964 6.646653 TGAGCATTTCTAGCAGAATAATACCG 59.353 38.462 0.41 0.00 33.67 4.02
3980 4009 5.114764 TCAGCCCATTGTTGAAGATATCA 57.885 39.130 5.32 0.00 35.85 2.15
3998 4027 2.227388 CACCAATCTGTGAAGGTTCAGC 59.773 50.000 0.00 0.00 38.55 4.26
4022 4051 1.103803 TATCTCGTGGGAGTGCAGAC 58.896 55.000 0.00 0.00 41.26 3.51
4036 4065 6.981559 GGTCTCTAAAATGTCACCAGTATCTC 59.018 42.308 0.00 0.00 0.00 2.75
4042 4071 3.262420 CCGGTCTCTAAAATGTCACCAG 58.738 50.000 0.00 0.00 0.00 4.00
4068 4097 6.309737 GCTTCTTCAAATTCATCATGTGGAAC 59.690 38.462 4.38 0.00 37.35 3.62
4083 4112 1.107114 TTGCGGGTTGCTTCTTCAAA 58.893 45.000 0.00 0.00 46.63 2.69
4092 4121 1.145162 CTTTGTGTGTTGCGGGTTGC 61.145 55.000 0.00 0.00 46.70 4.17
4096 4125 0.029300 CTCACTTTGTGTGTTGCGGG 59.971 55.000 0.00 0.00 46.27 6.13
4107 4136 2.816087 CCACTGGGTGATTCTCACTTTG 59.184 50.000 7.17 1.28 46.19 2.77
4178 4207 3.423539 TCTTTTGGTGAGTCCATGGAG 57.576 47.619 16.81 0.00 46.60 3.86
4237 4266 3.629855 TGCTGAAAACGTTTCCTTGATCA 59.370 39.130 15.01 11.85 0.00 2.92
4250 4279 3.832276 TCAACCGCATAATGCTGAAAAC 58.168 40.909 0.00 0.00 42.25 2.43
4258 4287 6.401474 CGATCTATTTCCTCAACCGCATAATG 60.401 42.308 0.00 0.00 0.00 1.90
4262 4291 3.069586 TCGATCTATTTCCTCAACCGCAT 59.930 43.478 0.00 0.00 0.00 4.73
4265 4294 7.385205 ACAATATTCGATCTATTTCCTCAACCG 59.615 37.037 0.00 0.00 0.00 4.44
4266 4295 8.608844 ACAATATTCGATCTATTTCCTCAACC 57.391 34.615 0.00 0.00 0.00 3.77
4295 4324 6.698008 TGATGCACCTTTGGATAACTTATG 57.302 37.500 0.00 0.00 33.11 1.90
4296 4325 7.448469 GGTATGATGCACCTTTGGATAACTTAT 59.552 37.037 0.00 0.00 33.11 1.73
4297 4326 6.770785 GGTATGATGCACCTTTGGATAACTTA 59.229 38.462 0.00 0.00 33.11 2.24
4354 4384 7.581476 CCAAGAGCTTTAACGATCTTAAACAA 58.419 34.615 11.57 0.00 37.53 2.83
4357 4387 6.178239 GCCAAGAGCTTTAACGATCTTAAA 57.822 37.500 11.57 8.72 37.53 1.52
4358 4388 5.796350 GCCAAGAGCTTTAACGATCTTAA 57.204 39.130 11.57 0.00 37.53 1.85
4385 4415 5.454897 GGAACACTAGATGGGAGGAAATACC 60.455 48.000 0.00 0.00 39.35 2.73
4395 4425 4.848357 ACATGAAAGGAACACTAGATGGG 58.152 43.478 0.00 0.00 0.00 4.00
4398 4428 8.708378 TGATCATACATGAAAGGAACACTAGAT 58.292 33.333 0.00 0.00 40.69 1.98
4404 4434 7.397221 AGAAGTGATCATACATGAAAGGAACA 58.603 34.615 0.00 0.00 40.69 3.18
4466 4506 4.559300 GCAGCCAGCAGAAAATCTTTACAA 60.559 41.667 0.00 0.00 44.79 2.41
4468 4508 3.505836 GCAGCCAGCAGAAAATCTTTAC 58.494 45.455 0.00 0.00 44.79 2.01
4469 4509 3.855689 GCAGCCAGCAGAAAATCTTTA 57.144 42.857 0.00 0.00 44.79 1.85
4470 4510 2.738013 GCAGCCAGCAGAAAATCTTT 57.262 45.000 0.00 0.00 44.79 2.52
4514 4556 2.985311 TGGCCCCTCCATTTCAAATTTT 59.015 40.909 0.00 0.00 40.72 1.82
4515 4557 2.630232 TGGCCCCTCCATTTCAAATTT 58.370 42.857 0.00 0.00 40.72 1.82
4517 4559 2.340721 TTGGCCCCTCCATTTCAAAT 57.659 45.000 0.00 0.00 46.04 2.32
4528 4570 5.974156 ATAAAATATTGCTTTTGGCCCCT 57.026 34.783 0.00 0.00 40.92 4.79
4529 4571 6.356556 AGAATAAAATATTGCTTTTGGCCCC 58.643 36.000 0.00 0.00 40.92 5.80
4530 4572 8.956533 TTAGAATAAAATATTGCTTTTGGCCC 57.043 30.769 0.00 0.00 40.92 5.80
4539 4581 8.919661 GCTGCTTGGATTAGAATAAAATATTGC 58.080 33.333 0.00 0.00 0.00 3.56
4540 4582 9.415544 GGCTGCTTGGATTAGAATAAAATATTG 57.584 33.333 0.00 0.00 0.00 1.90
4541 4583 8.588472 GGGCTGCTTGGATTAGAATAAAATATT 58.412 33.333 0.00 0.00 0.00 1.28
4542 4584 7.179160 GGGGCTGCTTGGATTAGAATAAAATAT 59.821 37.037 0.00 0.00 0.00 1.28
4543 4585 6.493458 GGGGCTGCTTGGATTAGAATAAAATA 59.507 38.462 0.00 0.00 0.00 1.40
4544 4586 5.305386 GGGGCTGCTTGGATTAGAATAAAAT 59.695 40.000 0.00 0.00 0.00 1.82
4545 4587 4.649218 GGGGCTGCTTGGATTAGAATAAAA 59.351 41.667 0.00 0.00 0.00 1.52
4546 4588 4.215109 GGGGCTGCTTGGATTAGAATAAA 58.785 43.478 0.00 0.00 0.00 1.40
4547 4589 3.436470 GGGGGCTGCTTGGATTAGAATAA 60.436 47.826 0.00 0.00 0.00 1.40
4548 4590 2.108250 GGGGGCTGCTTGGATTAGAATA 59.892 50.000 0.00 0.00 0.00 1.75
4549 4591 1.133356 GGGGGCTGCTTGGATTAGAAT 60.133 52.381 0.00 0.00 0.00 2.40
4550 4592 0.258774 GGGGGCTGCTTGGATTAGAA 59.741 55.000 0.00 0.00 0.00 2.10
4551 4593 0.918799 TGGGGGCTGCTTGGATTAGA 60.919 55.000 0.00 0.00 0.00 2.10
4552 4594 0.753111 GTGGGGGCTGCTTGGATTAG 60.753 60.000 0.00 0.00 0.00 1.73
4553 4595 1.306296 GTGGGGGCTGCTTGGATTA 59.694 57.895 0.00 0.00 0.00 1.75
4554 4596 2.037847 GTGGGGGCTGCTTGGATT 59.962 61.111 0.00 0.00 0.00 3.01
4555 4597 4.431131 CGTGGGGGCTGCTTGGAT 62.431 66.667 0.00 0.00 0.00 3.41
4557 4599 4.974721 AACGTGGGGGCTGCTTGG 62.975 66.667 0.00 0.00 0.00 3.61
4558 4600 2.026945 AAAAACGTGGGGGCTGCTTG 62.027 55.000 0.00 0.00 0.00 4.01
4559 4601 1.760480 AAAAACGTGGGGGCTGCTT 60.760 52.632 0.00 0.00 0.00 3.91
4560 4602 2.123468 AAAAACGTGGGGGCTGCT 60.123 55.556 0.00 0.00 0.00 4.24
4575 4617 3.427573 GCCTCCCCAGCTTTAGTAAAAA 58.572 45.455 0.00 0.00 0.00 1.94
4576 4618 2.291346 GGCCTCCCCAGCTTTAGTAAAA 60.291 50.000 0.00 0.00 0.00 1.52
4577 4619 1.283905 GGCCTCCCCAGCTTTAGTAAA 59.716 52.381 0.00 0.00 0.00 2.01
4578 4620 0.916809 GGCCTCCCCAGCTTTAGTAA 59.083 55.000 0.00 0.00 0.00 2.24
4579 4621 0.252974 TGGCCTCCCCAGCTTTAGTA 60.253 55.000 3.32 0.00 39.18 1.82
4580 4622 1.541368 TGGCCTCCCCAGCTTTAGT 60.541 57.895 3.32 0.00 39.18 2.24
4581 4623 3.415186 TGGCCTCCCCAGCTTTAG 58.585 61.111 3.32 0.00 39.18 1.85
4604 4646 3.694058 CTACAGCCAGGCCAGCAGG 62.694 68.421 18.87 12.79 38.23 4.85
4605 4647 2.124819 CTACAGCCAGGCCAGCAG 60.125 66.667 18.87 13.64 0.00 4.24
4606 4648 4.415150 GCTACAGCCAGGCCAGCA 62.415 66.667 20.44 0.51 31.60 4.41
4626 4668 4.659172 TCCAAACAGGCAGGGGCG 62.659 66.667 0.00 0.00 42.47 6.13
4627 4669 2.991540 GTCCAAACAGGCAGGGGC 60.992 66.667 0.00 0.00 37.29 5.80
4628 4670 2.283173 GGTCCAAACAGGCAGGGG 60.283 66.667 0.00 0.00 37.29 4.79
4629 4671 1.303643 GAGGTCCAAACAGGCAGGG 60.304 63.158 0.00 0.00 37.29 4.45
4630 4672 0.984230 TAGAGGTCCAAACAGGCAGG 59.016 55.000 0.00 0.00 37.29 4.85
4631 4673 4.696479 ATATAGAGGTCCAAACAGGCAG 57.304 45.455 0.00 0.00 37.29 4.85
4632 4674 5.216622 ACTATATAGAGGTCCAAACAGGCA 58.783 41.667 16.79 0.00 37.29 4.75
4633 4675 5.810080 ACTATATAGAGGTCCAAACAGGC 57.190 43.478 16.79 0.00 37.29 4.85
4658 4700 9.383519 CTGCACATTTAGATTTAGGTCTCTAAA 57.616 33.333 7.09 7.09 45.95 1.85
4659 4701 8.540388 ACTGCACATTTAGATTTAGGTCTCTAA 58.460 33.333 0.00 0.00 33.32 2.10
4660 4702 8.079211 ACTGCACATTTAGATTTAGGTCTCTA 57.921 34.615 0.00 0.00 0.00 2.43
4661 4703 6.951971 ACTGCACATTTAGATTTAGGTCTCT 58.048 36.000 0.00 0.00 0.00 3.10
4662 4704 7.617041 AACTGCACATTTAGATTTAGGTCTC 57.383 36.000 0.00 0.00 0.00 3.36
4663 4705 7.665559 TGAAACTGCACATTTAGATTTAGGTCT 59.334 33.333 0.00 0.00 0.00 3.85
4664 4706 7.816640 TGAAACTGCACATTTAGATTTAGGTC 58.183 34.615 0.00 0.00 0.00 3.85
4665 4707 7.759489 TGAAACTGCACATTTAGATTTAGGT 57.241 32.000 0.00 0.00 0.00 3.08
4666 4708 8.299570 ACTTGAAACTGCACATTTAGATTTAGG 58.700 33.333 0.00 0.00 0.00 2.69
4667 4709 9.683069 AACTTGAAACTGCACATTTAGATTTAG 57.317 29.630 0.00 0.00 0.00 1.85
4668 4710 9.677567 GAACTTGAAACTGCACATTTAGATTTA 57.322 29.630 0.00 0.00 0.00 1.40
4669 4711 8.196771 TGAACTTGAAACTGCACATTTAGATTT 58.803 29.630 0.00 0.00 0.00 2.17
4670 4712 7.715657 TGAACTTGAAACTGCACATTTAGATT 58.284 30.769 0.00 0.00 0.00 2.40
4671 4713 7.013655 ACTGAACTTGAAACTGCACATTTAGAT 59.986 33.333 0.00 0.00 0.00 1.98
4672 4714 6.318648 ACTGAACTTGAAACTGCACATTTAGA 59.681 34.615 0.00 0.00 0.00 2.10
4673 4715 6.498304 ACTGAACTTGAAACTGCACATTTAG 58.502 36.000 0.00 0.00 0.00 1.85
4674 4716 6.449635 ACTGAACTTGAAACTGCACATTTA 57.550 33.333 0.00 0.00 0.00 1.40
4675 4717 5.329035 ACTGAACTTGAAACTGCACATTT 57.671 34.783 0.00 0.00 0.00 2.32
4676 4718 4.989279 ACTGAACTTGAAACTGCACATT 57.011 36.364 0.00 0.00 0.00 2.71
4677 4719 4.989279 AACTGAACTTGAAACTGCACAT 57.011 36.364 0.00 0.00 0.00 3.21
4678 4720 4.095782 GGTAACTGAACTTGAAACTGCACA 59.904 41.667 0.00 0.00 0.00 4.57
4679 4721 4.497507 GGGTAACTGAACTTGAAACTGCAC 60.498 45.833 0.00 0.00 0.00 4.57
4680 4722 3.630312 GGGTAACTGAACTTGAAACTGCA 59.370 43.478 0.00 0.00 0.00 4.41
4681 4723 3.630312 TGGGTAACTGAACTTGAAACTGC 59.370 43.478 0.00 0.00 0.00 4.40
4682 4724 5.828299 TTGGGTAACTGAACTTGAAACTG 57.172 39.130 0.00 0.00 0.00 3.16
4683 4725 6.605594 TCATTTGGGTAACTGAACTTGAAACT 59.394 34.615 0.00 0.00 0.00 2.66
4684 4726 6.695713 GTCATTTGGGTAACTGAACTTGAAAC 59.304 38.462 0.00 0.00 28.82 2.78
4685 4727 6.378564 TGTCATTTGGGTAACTGAACTTGAAA 59.621 34.615 0.00 0.00 28.82 2.69
4686 4728 5.888724 TGTCATTTGGGTAACTGAACTTGAA 59.111 36.000 0.00 0.00 28.82 2.69
4687 4729 5.298276 GTGTCATTTGGGTAACTGAACTTGA 59.702 40.000 0.00 0.00 28.82 3.02
4688 4730 5.067153 TGTGTCATTTGGGTAACTGAACTTG 59.933 40.000 0.00 0.00 28.82 3.16
4689 4731 5.197451 TGTGTCATTTGGGTAACTGAACTT 58.803 37.500 0.00 0.00 28.82 2.66
4690 4732 4.787551 TGTGTCATTTGGGTAACTGAACT 58.212 39.130 0.00 0.00 28.82 3.01
4691 4733 5.335661 GGATGTGTCATTTGGGTAACTGAAC 60.336 44.000 0.00 0.00 28.82 3.18
4692 4734 4.764823 GGATGTGTCATTTGGGTAACTGAA 59.235 41.667 0.00 0.00 28.82 3.02
4693 4735 4.202514 TGGATGTGTCATTTGGGTAACTGA 60.203 41.667 0.00 0.00 0.00 3.41
4694 4736 4.078537 TGGATGTGTCATTTGGGTAACTG 58.921 43.478 0.00 0.00 0.00 3.16
4695 4737 4.380843 TGGATGTGTCATTTGGGTAACT 57.619 40.909 0.00 0.00 0.00 2.24
4696 4738 4.462483 ACATGGATGTGTCATTTGGGTAAC 59.538 41.667 0.00 0.00 40.03 2.50
4697 4739 4.671831 ACATGGATGTGTCATTTGGGTAA 58.328 39.130 0.00 0.00 40.03 2.85
4698 4740 4.314522 ACATGGATGTGTCATTTGGGTA 57.685 40.909 0.00 0.00 40.03 3.69
4699 4741 3.173953 ACATGGATGTGTCATTTGGGT 57.826 42.857 0.00 0.00 40.03 4.51
4700 4742 4.646040 ACATACATGGATGTGTCATTTGGG 59.354 41.667 23.07 0.00 41.89 4.12
4701 4743 5.840243 ACATACATGGATGTGTCATTTGG 57.160 39.130 23.07 0.00 41.89 3.28
4702 4744 7.916977 CCTTAACATACATGGATGTGTCATTTG 59.083 37.037 24.33 10.07 39.99 2.32
4703 4745 7.068593 CCCTTAACATACATGGATGTGTCATTT 59.931 37.037 24.33 9.94 39.99 2.32
4704 4746 6.547141 CCCTTAACATACATGGATGTGTCATT 59.453 38.462 24.33 10.67 39.99 2.57
4705 4747 6.064060 CCCTTAACATACATGGATGTGTCAT 58.936 40.000 24.33 11.05 39.99 3.06
4706 4748 5.436175 CCCTTAACATACATGGATGTGTCA 58.564 41.667 24.33 9.96 39.99 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.