Multiple sequence alignment - TraesCS2B01G083600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G083600 chr2B 100.000 6178 0 0 1 6178 46668331 46674508 0.000000e+00 11409.0
1 TraesCS2B01G083600 chr2B 96.514 2295 67 5 1315 3598 704117659 704119951 0.000000e+00 3783.0
2 TraesCS2B01G083600 chr2B 84.599 935 130 8 4261 5186 46505124 46506053 0.000000e+00 917.0
3 TraesCS2B01G083600 chr2B 84.118 510 47 19 758 1241 46504101 46504602 4.360000e-126 462.0
4 TraesCS2B01G083600 chr2B 88.660 194 10 5 853 1034 46236952 46237145 6.230000e-55 226.0
5 TraesCS2B01G083600 chr2B 84.513 226 29 3 3669 3890 46504674 46504897 1.040000e-52 219.0
6 TraesCS2B01G083600 chr1B 98.701 2309 19 1 1300 3597 579787970 579785662 0.000000e+00 4087.0
7 TraesCS2B01G083600 chr6B 98.370 2331 27 1 1280 3599 71582069 71579739 0.000000e+00 4084.0
8 TraesCS2B01G083600 chr6B 94.732 2297 104 5 1315 3597 709003815 709001522 0.000000e+00 3555.0
9 TraesCS2B01G083600 chr6B 95.580 2036 75 3 1573 3596 705914902 705916934 0.000000e+00 3247.0
10 TraesCS2B01G083600 chr6B 94.076 1857 96 7 1753 3597 514196155 514194301 0.000000e+00 2808.0
11 TraesCS2B01G083600 chr6B 96.223 1615 49 2 1315 2918 487554673 487556286 0.000000e+00 2634.0
12 TraesCS2B01G083600 chr6B 92.241 116 9 0 33 148 599445732 599445617 1.380000e-36 165.0
13 TraesCS2B01G083600 chr7B 98.653 2078 16 2 1531 3597 78114958 78112882 0.000000e+00 3672.0
14 TraesCS2B01G083600 chr7B 90.361 249 21 2 1316 1562 25664612 25664859 2.150000e-84 324.0
15 TraesCS2B01G083600 chr7B 89.764 127 10 3 29 154 523682093 523681969 6.410000e-35 159.0
16 TraesCS2B01G083600 chr4B 94.993 2277 103 2 1336 3601 484589458 484587182 0.000000e+00 3563.0
17 TraesCS2B01G083600 chr4B 83.654 624 99 2 1479 2102 369553037 369552417 8.920000e-163 584.0
18 TraesCS2B01G083600 chr4B 90.654 107 8 1 4022 4126 189812043 189811937 2.320000e-29 141.0
19 TraesCS2B01G083600 chr1A 98.964 1255 13 0 2344 3598 306145215 306146469 0.000000e+00 2246.0
20 TraesCS2B01G083600 chr1A 78.977 176 34 3 4034 4208 100843262 100843089 3.910000e-22 117.0
21 TraesCS2B01G083600 chr2A 93.036 1479 83 11 4207 5675 30857953 30859421 0.000000e+00 2143.0
22 TraesCS2B01G083600 chr2A 84.674 920 116 12 4289 5192 30765490 30766400 0.000000e+00 894.0
23 TraesCS2B01G083600 chr2A 96.019 427 12 2 3597 4020 30857542 30857966 0.000000e+00 689.0
24 TraesCS2B01G083600 chr2A 91.102 472 33 5 810 1275 30857084 30857552 1.130000e-176 630.0
25 TraesCS2B01G083600 chr2A 85.433 508 40 14 758 1240 30764143 30764641 1.200000e-136 497.0
26 TraesCS2B01G083600 chr2A 91.279 344 27 3 5751 6093 30860619 30860960 3.370000e-127 466.0
27 TraesCS2B01G083600 chr2A 82.393 443 38 14 164 605 30853866 30854269 3.540000e-92 350.0
28 TraesCS2B01G083600 chr2A 85.957 235 26 6 3669 3899 30764715 30764946 1.720000e-60 244.0
29 TraesCS2B01G083600 chr2A 92.647 136 10 0 648 783 30856953 30857088 4.890000e-46 196.0
30 TraesCS2B01G083600 chr2A 94.595 74 4 0 5681 5754 30860500 30860573 1.410000e-21 115.0
31 TraesCS2B01G083600 chr2A 86.667 75 6 3 202 274 30836142 30836070 5.130000e-11 80.5
32 TraesCS2B01G083600 chr2D 93.776 1430 66 12 4207 5623 28895692 28897111 0.000000e+00 2126.0
33 TraesCS2B01G083600 chr2D 92.925 523 32 3 754 1274 28894766 28895285 0.000000e+00 756.0
34 TraesCS2B01G083600 chr2D 84.454 669 87 9 4533 5186 28828616 28829282 1.450000e-180 643.0
35 TraesCS2B01G083600 chr2D 92.326 430 27 4 3597 4020 28895276 28895705 1.900000e-169 606.0
36 TraesCS2B01G083600 chr2D 87.284 464 37 5 164 609 28894119 28894578 1.540000e-140 510.0
37 TraesCS2B01G083600 chr2D 87.805 205 24 1 3695 3899 28827964 28828167 8.000000e-59 239.0
38 TraesCS2B01G083600 chr2D 93.578 109 7 0 39 147 62385910 62385802 4.960000e-36 163.0
39 TraesCS2B01G083600 chr2D 86.301 73 6 3 202 272 28861670 28861600 6.640000e-10 76.8
40 TraesCS2B01G083600 chrUn 96.057 1268 48 2 4409 5675 359864169 359865435 0.000000e+00 2063.0
41 TraesCS2B01G083600 chrUn 94.165 1234 34 15 3838 5042 423413254 423412030 0.000000e+00 1845.0
42 TraesCS2B01G083600 chrUn 93.523 1019 29 14 3597 4586 17183354 17184364 0.000000e+00 1482.0
43 TraesCS2B01G083600 chrUn 92.143 700 35 4 597 1277 17182668 17183366 0.000000e+00 970.0
44 TraesCS2B01G083600 chrUn 94.783 460 6 5 164 605 17182159 17182618 0.000000e+00 701.0
45 TraesCS2B01G083600 chrUn 93.689 206 12 1 5924 6129 386348118 386347914 2.160000e-79 307.0
46 TraesCS2B01G083600 chrUn 93.939 198 11 1 5924 6121 266885063 266884867 1.300000e-76 298.0
47 TraesCS2B01G083600 chrUn 93.137 204 13 1 5918 6121 281029090 281029292 1.300000e-76 298.0
48 TraesCS2B01G083600 chrUn 93.939 198 11 1 5924 6121 298942506 298942310 1.300000e-76 298.0
49 TraesCS2B01G083600 chrUn 93.137 204 13 1 5918 6121 318873690 318873892 1.300000e-76 298.0
50 TraesCS2B01G083600 chrUn 93.939 198 11 1 5924 6121 359925021 359924825 1.300000e-76 298.0
51 TraesCS2B01G083600 chrUn 97.857 140 3 0 5789 5928 358735866 358735727 6.190000e-60 243.0
52 TraesCS2B01G083600 chrUn 97.857 140 3 0 5789 5928 381620500 381620361 6.190000e-60 243.0
53 TraesCS2B01G083600 chrUn 97.857 140 3 0 5789 5928 444450239 444450378 6.190000e-60 243.0
54 TraesCS2B01G083600 chrUn 84.127 189 29 1 4021 4208 12798516 12798704 1.370000e-41 182.0
55 TraesCS2B01G083600 chrUn 94.595 74 4 0 5681 5754 17179881 17179808 1.410000e-21 115.0
56 TraesCS2B01G083600 chrUn 94.595 74 4 0 5681 5754 469759741 469759668 1.410000e-21 115.0
57 TraesCS2B01G083600 chrUn 100.000 50 0 0 6129 6178 409044218 409044267 6.590000e-15 93.5
58 TraesCS2B01G083600 chr4D 87.418 763 92 2 1316 2078 298237283 298236525 0.000000e+00 874.0
59 TraesCS2B01G083600 chr4A 85.751 786 96 6 1316 2101 187560100 187559331 0.000000e+00 817.0
60 TraesCS2B01G083600 chr5B 80.689 668 100 14 4603 5247 488015898 488016559 5.560000e-135 492.0
61 TraesCS2B01G083600 chr5B 79.792 673 105 17 4599 5247 488112662 488113327 1.570000e-125 460.0
62 TraesCS2B01G083600 chr5B 88.672 256 26 1 989 1241 488014594 488014849 6.010000e-80 309.0
63 TraesCS2B01G083600 chr5B 80.682 176 31 3 4034 4208 311282894 311282721 3.890000e-27 134.0
64 TraesCS2B01G083600 chr5B 91.011 89 8 0 4621 4709 129334346 129334258 3.020000e-23 121.0
65 TraesCS2B01G083600 chr5A 80.441 680 104 16 4591 5247 512601072 512601745 5.560000e-135 492.0
66 TraesCS2B01G083600 chr5A 89.730 185 19 0 4264 4448 512600801 512600985 2.880000e-58 237.0
67 TraesCS2B01G083600 chr5A 84.733 131 16 4 4078 4206 500819009 500818881 1.810000e-25 128.0
68 TraesCS2B01G083600 chr5A 90.217 92 9 0 4618 4709 126640309 126640400 3.020000e-23 121.0
69 TraesCS2B01G083600 chr5D 79.853 680 108 15 4591 5247 407020484 407019811 2.610000e-128 470.0
70 TraesCS2B01G083600 chr5D 89.105 257 27 1 4264 4519 407107398 407107142 9.990000e-83 318.0
71 TraesCS2B01G083600 chr3B 95.327 107 5 0 41 147 705143443 705143337 2.960000e-38 171.0
72 TraesCS2B01G083600 chr3B 94.495 109 6 0 39 147 750136326 750136218 1.070000e-37 169.0
73 TraesCS2B01G083600 chr3B 81.111 180 29 4 4034 4208 505553337 505553158 8.350000e-29 139.0
74 TraesCS2B01G083600 chr6A 94.495 109 6 0 39 147 436115469 436115577 1.070000e-37 169.0
75 TraesCS2B01G083600 chr6A 92.373 118 7 2 31 147 408886067 408886183 3.830000e-37 167.0
76 TraesCS2B01G083600 chr6A 91.453 117 10 0 31 147 542057047 542057163 1.780000e-35 161.0
77 TraesCS2B01G083600 chr6A 79.235 183 35 3 4028 4209 532555604 532555784 2.340000e-24 124.0
78 TraesCS2B01G083600 chr7D 82.266 203 26 8 4014 4208 576301409 576301609 3.830000e-37 167.0
79 TraesCS2B01G083600 chr3A 90.400 125 9 3 40 164 427104323 427104444 1.780000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G083600 chr2B 46668331 46674508 6177 False 11409.000000 11409 100.000000 1 6178 1 chr2B.!!$F2 6177
1 TraesCS2B01G083600 chr2B 704117659 704119951 2292 False 3783.000000 3783 96.514000 1315 3598 1 chr2B.!!$F3 2283
2 TraesCS2B01G083600 chr2B 46504101 46506053 1952 False 532.666667 917 84.410000 758 5186 3 chr2B.!!$F4 4428
3 TraesCS2B01G083600 chr1B 579785662 579787970 2308 True 4087.000000 4087 98.701000 1300 3597 1 chr1B.!!$R1 2297
4 TraesCS2B01G083600 chr6B 71579739 71582069 2330 True 4084.000000 4084 98.370000 1280 3599 1 chr6B.!!$R1 2319
5 TraesCS2B01G083600 chr6B 709001522 709003815 2293 True 3555.000000 3555 94.732000 1315 3597 1 chr6B.!!$R4 2282
6 TraesCS2B01G083600 chr6B 705914902 705916934 2032 False 3247.000000 3247 95.580000 1573 3596 1 chr6B.!!$F2 2023
7 TraesCS2B01G083600 chr6B 514194301 514196155 1854 True 2808.000000 2808 94.076000 1753 3597 1 chr6B.!!$R2 1844
8 TraesCS2B01G083600 chr6B 487554673 487556286 1613 False 2634.000000 2634 96.223000 1315 2918 1 chr6B.!!$F1 1603
9 TraesCS2B01G083600 chr7B 78112882 78114958 2076 True 3672.000000 3672 98.653000 1531 3597 1 chr7B.!!$R1 2066
10 TraesCS2B01G083600 chr4B 484587182 484589458 2276 True 3563.000000 3563 94.993000 1336 3601 1 chr4B.!!$R3 2265
11 TraesCS2B01G083600 chr4B 369552417 369553037 620 True 584.000000 584 83.654000 1479 2102 1 chr4B.!!$R2 623
12 TraesCS2B01G083600 chr1A 306145215 306146469 1254 False 2246.000000 2246 98.964000 2344 3598 1 chr1A.!!$F1 1254
13 TraesCS2B01G083600 chr2A 30853866 30860960 7094 False 655.571429 2143 91.581571 164 6093 7 chr2A.!!$F2 5929
14 TraesCS2B01G083600 chr2A 30764143 30766400 2257 False 545.000000 894 85.354667 758 5192 3 chr2A.!!$F1 4434
15 TraesCS2B01G083600 chr2D 28894119 28897111 2992 False 999.500000 2126 91.577750 164 5623 4 chr2D.!!$F2 5459
16 TraesCS2B01G083600 chr2D 28827964 28829282 1318 False 441.000000 643 86.129500 3695 5186 2 chr2D.!!$F1 1491
17 TraesCS2B01G083600 chrUn 359864169 359865435 1266 False 2063.000000 2063 96.057000 4409 5675 1 chrUn.!!$F4 1266
18 TraesCS2B01G083600 chrUn 423412030 423413254 1224 True 1845.000000 1845 94.165000 3838 5042 1 chrUn.!!$R8 1204
19 TraesCS2B01G083600 chrUn 17182159 17184364 2205 False 1051.000000 1482 93.483000 164 4586 3 chrUn.!!$F7 4422
20 TraesCS2B01G083600 chr4D 298236525 298237283 758 True 874.000000 874 87.418000 1316 2078 1 chr4D.!!$R1 762
21 TraesCS2B01G083600 chr4A 187559331 187560100 769 True 817.000000 817 85.751000 1316 2101 1 chr4A.!!$R1 785
22 TraesCS2B01G083600 chr5B 488112662 488113327 665 False 460.000000 460 79.792000 4599 5247 1 chr5B.!!$F1 648
23 TraesCS2B01G083600 chr5B 488014594 488016559 1965 False 400.500000 492 84.680500 989 5247 2 chr5B.!!$F2 4258
24 TraesCS2B01G083600 chr5A 512600801 512601745 944 False 364.500000 492 85.085500 4264 5247 2 chr5A.!!$F2 983
25 TraesCS2B01G083600 chr5D 407019811 407020484 673 True 470.000000 470 79.853000 4591 5247 1 chr5D.!!$R1 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.038744 TCCGAACGGAGGGAGTAAGT 59.961 55.000 12.04 0.0 39.76 2.24 F
150 151 0.893447 CCGAACGGAGGGAGTAAGTT 59.107 55.000 7.53 0.0 37.50 2.66 F
151 152 1.274447 CCGAACGGAGGGAGTAAGTTT 59.726 52.381 7.53 0.0 37.50 2.66 F
2118 5107 1.305930 GGCAACAACATCCTCGGACC 61.306 60.000 0.00 0.0 0.00 4.46 F
4106 7199 0.672889 TTGAAAAGCGCCATTGCAGA 59.327 45.000 2.29 0.0 37.32 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2003 4992 1.160137 GTGCCGAAGAATCTGCAGTT 58.840 50.0 14.67 7.43 44.89 3.16 R
2194 5186 0.323725 AAAGCATCCACGCCAATCCT 60.324 50.0 0.00 0.00 0.00 3.24 R
2603 5609 1.444119 AACACGCACAAGGCATTCGT 61.444 50.0 0.00 0.00 45.17 3.85 R
4157 7279 0.721718 GATTCCGAGAAACGCCACTG 59.278 55.0 0.00 0.00 41.07 3.66 R
6103 10475 0.039074 CGAGGAGAAGCACGAACACT 60.039 55.0 0.00 0.00 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.880878 AATAAACTTTTGTTAGGAAATTGCGT 57.119 26.923 0.00 0.00 42.67 5.24
38 39 8.880878 ATAAACTTTTGTTAGGAAATTGCGTT 57.119 26.923 0.00 0.00 42.67 4.84
39 40 6.582437 AACTTTTGTTAGGAAATTGCGTTG 57.418 33.333 0.00 0.00 41.50 4.10
40 41 5.656480 ACTTTTGTTAGGAAATTGCGTTGT 58.344 33.333 0.00 0.00 0.00 3.32
41 42 6.797454 ACTTTTGTTAGGAAATTGCGTTGTA 58.203 32.000 0.00 0.00 0.00 2.41
42 43 6.693978 ACTTTTGTTAGGAAATTGCGTTGTAC 59.306 34.615 0.00 0.00 0.00 2.90
43 44 6.380095 TTTGTTAGGAAATTGCGTTGTACT 57.620 33.333 0.00 0.00 0.00 2.73
44 45 5.600908 TGTTAGGAAATTGCGTTGTACTC 57.399 39.130 0.00 0.00 0.00 2.59
45 46 4.453136 TGTTAGGAAATTGCGTTGTACTCC 59.547 41.667 0.00 0.00 0.00 3.85
46 47 3.134574 AGGAAATTGCGTTGTACTCCA 57.865 42.857 0.00 0.00 0.00 3.86
47 48 3.686016 AGGAAATTGCGTTGTACTCCAT 58.314 40.909 0.00 0.00 0.00 3.41
48 49 3.689649 AGGAAATTGCGTTGTACTCCATC 59.310 43.478 0.00 0.00 0.00 3.51
49 50 3.181500 GGAAATTGCGTTGTACTCCATCC 60.181 47.826 0.00 0.00 0.00 3.51
50 51 1.651987 ATTGCGTTGTACTCCATCCG 58.348 50.000 0.00 0.00 0.00 4.18
51 52 1.017177 TTGCGTTGTACTCCATCCGC 61.017 55.000 0.00 0.00 41.51 5.54
52 53 1.153628 GCGTTGTACTCCATCCGCT 60.154 57.895 0.00 0.00 39.40 5.52
53 54 0.739813 GCGTTGTACTCCATCCGCTT 60.740 55.000 0.00 0.00 39.40 4.68
54 55 0.999406 CGTTGTACTCCATCCGCTTG 59.001 55.000 0.00 0.00 0.00 4.01
55 56 1.369625 GTTGTACTCCATCCGCTTGG 58.630 55.000 0.00 0.00 38.18 3.61
69 70 3.621268 TCCGCTTGGAATTATTTGTCTCG 59.379 43.478 0.00 0.00 39.40 4.04
70 71 3.621268 CCGCTTGGAATTATTTGTCTCGA 59.379 43.478 0.00 0.00 33.02 4.04
71 72 4.094294 CCGCTTGGAATTATTTGTCTCGAA 59.906 41.667 0.00 0.00 33.02 3.71
72 73 5.391523 CCGCTTGGAATTATTTGTCTCGAAA 60.392 40.000 0.00 0.00 33.02 3.46
73 74 6.083630 CGCTTGGAATTATTTGTCTCGAAAA 58.916 36.000 0.00 0.00 0.00 2.29
74 75 6.747280 CGCTTGGAATTATTTGTCTCGAAAAT 59.253 34.615 0.00 0.00 0.00 1.82
75 76 7.253420 CGCTTGGAATTATTTGTCTCGAAAATG 60.253 37.037 4.22 0.00 0.00 2.32
76 77 7.009540 GCTTGGAATTATTTGTCTCGAAAATGG 59.990 37.037 4.22 0.00 0.00 3.16
77 78 7.695480 TGGAATTATTTGTCTCGAAAATGGA 57.305 32.000 4.22 0.00 0.00 3.41
78 79 8.292444 TGGAATTATTTGTCTCGAAAATGGAT 57.708 30.769 4.22 0.00 0.00 3.41
79 80 8.190122 TGGAATTATTTGTCTCGAAAATGGATG 58.810 33.333 4.22 0.00 0.00 3.51
80 81 8.190784 GGAATTATTTGTCTCGAAAATGGATGT 58.809 33.333 4.22 0.00 0.00 3.06
84 85 9.613428 TTATTTGTCTCGAAAATGGATGTATCT 57.387 29.630 4.22 0.00 0.00 1.98
86 87 8.648557 TTTGTCTCGAAAATGGATGTATCTAG 57.351 34.615 0.00 0.00 0.00 2.43
87 88 7.582667 TGTCTCGAAAATGGATGTATCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
88 89 8.007405 TGTCTCGAAAATGGATGTATCTAGAA 57.993 34.615 0.00 0.00 0.00 2.10
89 90 7.921214 TGTCTCGAAAATGGATGTATCTAGAAC 59.079 37.037 0.00 0.00 0.00 3.01
90 91 8.138712 GTCTCGAAAATGGATGTATCTAGAACT 58.861 37.037 0.00 0.00 0.00 3.01
91 92 9.350951 TCTCGAAAATGGATGTATCTAGAACTA 57.649 33.333 0.00 0.00 0.00 2.24
92 93 9.967346 CTCGAAAATGGATGTATCTAGAACTAA 57.033 33.333 0.00 0.00 0.00 2.24
116 117 8.744008 AAAATACGTCTAGATACATCCATTCG 57.256 34.615 0.00 0.00 0.00 3.34
117 118 7.450124 AATACGTCTAGATACATCCATTCGT 57.550 36.000 0.00 0.00 0.00 3.85
118 119 5.109662 ACGTCTAGATACATCCATTCGTG 57.890 43.478 0.00 0.00 0.00 4.35
119 120 3.914966 CGTCTAGATACATCCATTCGTGC 59.085 47.826 0.00 0.00 0.00 5.34
120 121 4.556699 CGTCTAGATACATCCATTCGTGCA 60.557 45.833 0.00 0.00 0.00 4.57
121 122 5.289595 GTCTAGATACATCCATTCGTGCAA 58.710 41.667 0.00 0.00 0.00 4.08
122 123 5.175856 GTCTAGATACATCCATTCGTGCAAC 59.824 44.000 0.00 0.00 0.00 4.17
123 124 3.872696 AGATACATCCATTCGTGCAACA 58.127 40.909 0.00 0.00 35.74 3.33
124 125 4.260985 AGATACATCCATTCGTGCAACAA 58.739 39.130 0.00 0.00 35.74 2.83
125 126 2.995466 ACATCCATTCGTGCAACAAG 57.005 45.000 0.00 0.00 35.74 3.16
126 127 2.229792 ACATCCATTCGTGCAACAAGT 58.770 42.857 0.00 0.00 35.74 3.16
127 128 3.407698 ACATCCATTCGTGCAACAAGTA 58.592 40.909 0.00 0.00 35.74 2.24
128 129 3.818210 ACATCCATTCGTGCAACAAGTAA 59.182 39.130 0.00 0.00 35.74 2.24
129 130 4.458989 ACATCCATTCGTGCAACAAGTAAT 59.541 37.500 0.00 0.00 35.74 1.89
130 131 5.048083 ACATCCATTCGTGCAACAAGTAATT 60.048 36.000 0.00 0.00 35.74 1.40
131 132 5.041951 TCCATTCGTGCAACAAGTAATTC 57.958 39.130 0.00 0.00 35.74 2.17
132 133 4.083003 TCCATTCGTGCAACAAGTAATTCC 60.083 41.667 0.00 0.00 35.74 3.01
133 134 3.529634 TTCGTGCAACAAGTAATTCCG 57.470 42.857 0.00 0.00 35.74 4.30
134 135 2.756829 TCGTGCAACAAGTAATTCCGA 58.243 42.857 0.00 0.00 35.74 4.55
135 136 3.132160 TCGTGCAACAAGTAATTCCGAA 58.868 40.909 0.00 0.00 35.74 4.30
136 137 3.059461 TCGTGCAACAAGTAATTCCGAAC 60.059 43.478 0.00 0.00 35.74 3.95
137 138 3.223157 GTGCAACAAGTAATTCCGAACG 58.777 45.455 0.00 0.00 36.32 3.95
138 139 2.224549 TGCAACAAGTAATTCCGAACGG 59.775 45.455 6.94 6.94 0.00 4.44
139 140 2.481185 GCAACAAGTAATTCCGAACGGA 59.519 45.455 12.04 12.04 43.52 4.69
140 141 3.424433 GCAACAAGTAATTCCGAACGGAG 60.424 47.826 15.34 5.60 46.06 4.63
141 142 2.968675 ACAAGTAATTCCGAACGGAGG 58.031 47.619 15.34 4.52 46.06 4.30
142 143 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
143 144 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
144 145 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
145 146 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
146 147 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
147 148 1.856629 ATTCCGAACGGAGGGAGTAA 58.143 50.000 15.34 0.34 46.06 2.24
148 149 1.180029 TTCCGAACGGAGGGAGTAAG 58.820 55.000 15.34 0.00 46.06 2.34
149 150 0.038744 TCCGAACGGAGGGAGTAAGT 59.961 55.000 12.04 0.00 39.76 2.24
150 151 0.893447 CCGAACGGAGGGAGTAAGTT 59.107 55.000 7.53 0.00 37.50 2.66
151 152 1.274447 CCGAACGGAGGGAGTAAGTTT 59.726 52.381 7.53 0.00 37.50 2.66
152 153 2.289257 CCGAACGGAGGGAGTAAGTTTT 60.289 50.000 7.53 0.00 37.50 2.43
153 154 3.396560 CGAACGGAGGGAGTAAGTTTTT 58.603 45.455 0.00 0.00 0.00 1.94
222 223 4.062991 GTTGTAACGGGATTCTTGTCTGT 58.937 43.478 0.00 0.00 0.00 3.41
305 324 6.381481 TCGAGTTATTTCTATCGGTAAGCA 57.619 37.500 0.00 0.00 35.91 3.91
731 3395 8.298854 TCATAGACAAGGATGTTGTTTGAAATG 58.701 33.333 0.00 0.00 40.74 2.32
738 3402 3.731652 TGTTGTTTGAAATGAGCCTGG 57.268 42.857 0.00 0.00 0.00 4.45
745 3409 2.509569 TGAAATGAGCCTGGCGTTTAA 58.490 42.857 13.96 6.61 0.00 1.52
842 3508 2.593978 CGGAGAGGACGAGGGGTA 59.406 66.667 0.00 0.00 0.00 3.69
910 3598 1.970639 CTCGATCTCCATCCGCCAT 59.029 57.895 0.00 0.00 0.00 4.40
920 3608 2.749865 ATCCGCCATGCACGAAACG 61.750 57.895 7.82 0.00 0.00 3.60
936 3624 3.751246 CGTACCCTCCCGAACGCA 61.751 66.667 0.00 0.00 0.00 5.24
937 3625 2.183555 GTACCCTCCCGAACGCAG 59.816 66.667 0.00 0.00 0.00 5.18
947 3639 3.220110 TCCCGAACGCAGTAGATATCTT 58.780 45.455 11.25 0.00 45.00 2.40
1005 3705 3.233507 AGAAAGAAAGGAAGCAATGGCA 58.766 40.909 0.00 0.00 44.61 4.92
1295 4280 7.106239 CAGTTGTATATATCAGAATCCCACCC 58.894 42.308 0.00 0.00 0.00 4.61
2003 4992 3.393970 CTCTCCCCCGAGCTTGCA 61.394 66.667 0.00 0.00 35.94 4.08
2118 5107 1.305930 GGCAACAACATCCTCGGACC 61.306 60.000 0.00 0.00 0.00 4.46
2643 5649 1.228245 GAGTGTCTTGGCAAGGGCA 60.228 57.895 25.92 20.94 43.71 5.36
2666 5672 3.487372 AGGTTGCTCTTGGTAAACTTCC 58.513 45.455 0.00 0.00 33.88 3.46
2830 5836 3.718434 TGAGGATGTGGCTCCAATTCTAT 59.282 43.478 0.00 0.00 37.81 1.98
2840 5846 7.108847 GTGGCTCCAATTCTATAGATTATGCT 58.891 38.462 2.58 0.00 0.00 3.79
3452 6459 2.181021 GTAGGGTCGACAGTGCGG 59.819 66.667 18.91 0.00 0.00 5.69
4052 7145 4.816385 GGATAAATGCCACTCGAATTCTGA 59.184 41.667 3.52 2.14 0.00 3.27
4105 7198 1.458064 CTTTGAAAAGCGCCATTGCAG 59.542 47.619 2.29 0.00 37.32 4.41
4106 7199 0.672889 TTGAAAAGCGCCATTGCAGA 59.327 45.000 2.29 0.00 37.32 4.26
4129 7222 7.479916 CAGATTTTGCAAACTTTTAAAAACGCA 59.520 29.630 12.39 5.76 0.00 5.24
4130 7223 7.691877 AGATTTTGCAAACTTTTAAAAACGCAG 59.308 29.630 12.39 0.00 0.00 5.18
4186 7308 2.691409 TCTCGGAATCGCCAGAATTT 57.309 45.000 0.00 0.00 35.94 1.82
4294 7492 2.124570 ATGCCAGGCCTTACTGCG 60.125 61.111 9.64 0.00 37.16 5.18
4604 7807 7.586349 AGTAATACACCATTTCTCATGGGATT 58.414 34.615 0.00 4.97 43.32 3.01
4883 8115 2.936928 CTCAACATGAGGCTGCACA 58.063 52.632 0.00 1.23 40.71 4.57
4887 8119 1.782201 AACATGAGGCTGCACAGGGA 61.782 55.000 0.00 0.00 0.00 4.20
4927 8159 2.224426 TGATTTCGCAGTACAACCTGGT 60.224 45.455 0.00 0.00 32.92 4.00
5113 8345 0.683504 ATCGAGAAGGTACCGGCAGT 60.684 55.000 6.18 0.00 0.00 4.40
5186 8418 1.745087 GCACGGGATTGACATGACATT 59.255 47.619 0.00 0.00 0.00 2.71
5230 8462 1.588139 GTACCGATCTGCGTTCCGG 60.588 63.158 0.00 0.00 46.65 5.14
5298 8534 4.377897 ACACCTTGTGCTAGTGTTTAGTC 58.622 43.478 0.00 0.00 41.86 2.59
5526 8774 6.428771 ACGGTTACTTAAATGTGCACAGTATT 59.571 34.615 25.84 20.32 0.00 1.89
5527 8775 7.040961 ACGGTTACTTAAATGTGCACAGTATTT 60.041 33.333 25.84 21.41 0.00 1.40
5528 8776 8.444715 CGGTTACTTAAATGTGCACAGTATTTA 58.555 33.333 25.84 20.40 0.00 1.40
5544 8792 9.454585 CACAGTATTTATATTGCAACCTGAATG 57.545 33.333 0.00 0.00 0.00 2.67
5604 8852 4.390297 GTGCTGCAAAACTTTGGTTTACAA 59.610 37.500 2.77 0.00 43.90 2.41
5659 8909 5.940470 ACTGTACTTCATCACTCCAATTTCC 59.060 40.000 0.00 0.00 0.00 3.13
5668 8918 0.977627 CTCCAATTTCCAAGGCCCCC 60.978 60.000 0.00 0.00 0.00 5.40
5675 8925 2.523841 TTCCAAGGCCCCCTCATATA 57.476 50.000 0.00 0.00 30.89 0.86
5676 8926 1.742308 TCCAAGGCCCCCTCATATAC 58.258 55.000 0.00 0.00 30.89 1.47
5677 8927 1.060954 TCCAAGGCCCCCTCATATACA 60.061 52.381 0.00 0.00 30.89 2.29
5678 8928 1.780309 CCAAGGCCCCCTCATATACAA 59.220 52.381 0.00 0.00 30.89 2.41
5679 8929 2.489073 CCAAGGCCCCCTCATATACAAC 60.489 54.545 0.00 0.00 30.89 3.32
5725 10047 3.339141 AGAGTTCTGCCGAGGATTTTTC 58.661 45.455 0.00 0.00 0.00 2.29
5731 10053 1.161843 GCCGAGGATTTTTCCGTCAA 58.838 50.000 0.00 0.00 34.28 3.18
5748 10070 5.533903 TCCGTCAATCCTAATACTGGTACTC 59.466 44.000 0.00 0.00 0.00 2.59
5761 10132 3.202595 ACTGGTACTCGAGGGTCTAGAAT 59.797 47.826 18.41 0.00 0.00 2.40
5778 10149 7.146648 GTCTAGAATACAGAAAATAGGGGACG 58.853 42.308 0.00 0.00 0.00 4.79
5781 10152 4.706842 ATACAGAAAATAGGGGACGCAT 57.293 40.909 0.00 0.00 0.00 4.73
5788 10159 6.536582 CAGAAAATAGGGGACGCATGATATAG 59.463 42.308 0.00 0.00 0.00 1.31
5810 10181 3.646637 GCTAGGTTTAGCCCTCCAAGATA 59.353 47.826 0.00 0.00 45.34 1.98
5822 10193 5.684704 CCCTCCAAGATAGATAAAAGCACA 58.315 41.667 0.00 0.00 0.00 4.57
5840 10211 3.118542 CACAACTTTTCTGCCTTGCTTC 58.881 45.455 0.00 0.00 0.00 3.86
5873 10244 8.845413 AGAAGAATATAGAGGATTGCAATGTC 57.155 34.615 18.59 13.10 0.00 3.06
5880 10251 1.077663 AGGATTGCAATGTCAAGGGGT 59.922 47.619 18.59 0.00 0.00 4.95
5885 10256 1.338674 TGCAATGTCAAGGGGTACTCG 60.339 52.381 0.00 0.00 0.00 4.18
5894 10265 3.087031 CAAGGGGTACTCGTCTAGTCAA 58.913 50.000 0.00 0.00 39.80 3.18
5898 10269 2.944349 GGGTACTCGTCTAGTCAAGGAG 59.056 54.545 0.00 0.00 39.80 3.69
5918 10289 4.439016 GGAGACTCGGTGAGTTCTAATGAC 60.439 50.000 0.38 0.00 43.53 3.06
5933 10304 2.348411 ATGACGATGGTGGGGATTTC 57.652 50.000 0.00 0.00 0.00 2.17
5946 10317 2.304761 GGGGATTTCGATGGGTAGCATA 59.695 50.000 0.00 0.00 0.00 3.14
5948 10319 4.394729 GGGATTTCGATGGGTAGCATAAA 58.605 43.478 0.00 0.00 0.00 1.40
5978 10349 2.691409 TGTGGTGTAGGCTAATCTGC 57.309 50.000 0.00 0.00 0.00 4.26
6003 10374 0.171455 GAGTGTCTACGGTGCCTCTG 59.829 60.000 0.00 0.00 0.00 3.35
6011 10382 2.286523 CGGTGCCTCTGGTTCCTCT 61.287 63.158 0.00 0.00 0.00 3.69
6016 10387 3.181464 GGTGCCTCTGGTTCCTCTTATAC 60.181 52.174 0.00 0.00 0.00 1.47
6021 10392 5.141182 CCTCTGGTTCCTCTTATACAGCTA 58.859 45.833 0.00 0.00 0.00 3.32
6071 10443 6.017275 GCATGAAGGCATATATGAATAGGAGC 60.017 42.308 17.10 8.29 32.27 4.70
6076 10448 4.372656 GCATATATGAATAGGAGCCGGTC 58.627 47.826 17.10 0.00 0.00 4.79
6079 10451 1.991121 ATGAATAGGAGCCGGTCGTA 58.009 50.000 1.90 6.13 0.00 3.43
6089 10461 0.509929 GCCGGTCGTAGTGTTGTTTC 59.490 55.000 1.90 0.00 0.00 2.78
6090 10462 1.855513 CCGGTCGTAGTGTTGTTTCA 58.144 50.000 0.00 0.00 0.00 2.69
6091 10463 1.523934 CCGGTCGTAGTGTTGTTTCAC 59.476 52.381 0.00 0.00 38.46 3.18
6092 10464 2.195096 CGGTCGTAGTGTTGTTTCACA 58.805 47.619 0.00 0.00 40.37 3.58
6093 10465 2.604011 CGGTCGTAGTGTTGTTTCACAA 59.396 45.455 0.00 0.00 40.37 3.33
6094 10466 3.062369 CGGTCGTAGTGTTGTTTCACAAA 59.938 43.478 0.00 0.00 40.15 2.83
6095 10467 4.336932 GGTCGTAGTGTTGTTTCACAAAC 58.663 43.478 0.00 0.00 40.15 2.93
6107 10479 6.751514 TGTTTCACAAACATTGTAGAGTGT 57.248 33.333 12.80 3.85 45.79 3.55
6108 10480 7.151999 TGTTTCACAAACATTGTAGAGTGTT 57.848 32.000 12.80 0.00 45.79 3.32
6109 10481 7.247728 TGTTTCACAAACATTGTAGAGTGTTC 58.752 34.615 1.12 7.75 45.79 3.18
6110 10482 5.651172 TCACAAACATTGTAGAGTGTTCG 57.349 39.130 1.12 0.00 43.23 3.95
6111 10483 5.113383 TCACAAACATTGTAGAGTGTTCGT 58.887 37.500 1.12 0.00 43.23 3.85
6112 10484 5.006261 TCACAAACATTGTAGAGTGTTCGTG 59.994 40.000 11.63 11.63 41.96 4.35
6113 10485 4.211389 CAAACATTGTAGAGTGTTCGTGC 58.789 43.478 1.12 0.00 37.56 5.34
6114 10486 3.386768 ACATTGTAGAGTGTTCGTGCT 57.613 42.857 0.00 0.00 0.00 4.40
6115 10487 3.728845 ACATTGTAGAGTGTTCGTGCTT 58.271 40.909 0.00 0.00 0.00 3.91
6116 10488 3.741344 ACATTGTAGAGTGTTCGTGCTTC 59.259 43.478 0.00 0.00 0.00 3.86
6117 10489 3.728076 TTGTAGAGTGTTCGTGCTTCT 57.272 42.857 0.00 0.00 0.00 2.85
6118 10490 3.284323 TGTAGAGTGTTCGTGCTTCTC 57.716 47.619 0.00 0.00 0.00 2.87
6119 10491 2.030185 TGTAGAGTGTTCGTGCTTCTCC 60.030 50.000 0.00 0.00 0.00 3.71
6120 10492 1.333177 AGAGTGTTCGTGCTTCTCCT 58.667 50.000 0.00 0.00 0.00 3.69
6121 10493 1.271102 AGAGTGTTCGTGCTTCTCCTC 59.729 52.381 0.00 0.00 0.00 3.71
6122 10494 0.039074 AGTGTTCGTGCTTCTCCTCG 60.039 55.000 0.00 0.00 0.00 4.63
6123 10495 1.009389 GTGTTCGTGCTTCTCCTCGG 61.009 60.000 0.00 0.00 0.00 4.63
6124 10496 1.446272 GTTCGTGCTTCTCCTCGGG 60.446 63.158 0.00 0.00 0.00 5.14
6125 10497 1.906824 TTCGTGCTTCTCCTCGGGT 60.907 57.895 0.00 0.00 0.00 5.28
6126 10498 2.125912 CGTGCTTCTCCTCGGGTG 60.126 66.667 0.00 0.00 0.00 4.61
6127 10499 2.932234 CGTGCTTCTCCTCGGGTGT 61.932 63.158 0.00 0.00 0.00 4.16
6128 10500 1.374758 GTGCTTCTCCTCGGGTGTG 60.375 63.158 0.00 0.00 0.00 3.82
6129 10501 2.266055 GCTTCTCCTCGGGTGTGG 59.734 66.667 0.00 0.00 0.00 4.17
6130 10502 2.982130 CTTCTCCTCGGGTGTGGG 59.018 66.667 0.00 0.00 0.00 4.61
6131 10503 2.606519 TTCTCCTCGGGTGTGGGG 60.607 66.667 0.00 0.00 0.00 4.96
6132 10504 4.715130 TCTCCTCGGGTGTGGGGG 62.715 72.222 0.00 0.00 29.82 5.40
6136 10508 4.047125 CTCGGGTGTGGGGGCATT 62.047 66.667 0.00 0.00 0.00 3.56
6137 10509 4.358841 TCGGGTGTGGGGGCATTG 62.359 66.667 0.00 0.00 0.00 2.82
6139 10511 3.991318 GGGTGTGGGGGCATTGGA 61.991 66.667 0.00 0.00 0.00 3.53
6140 10512 2.362889 GGTGTGGGGGCATTGGAG 60.363 66.667 0.00 0.00 0.00 3.86
6141 10513 2.440599 GTGTGGGGGCATTGGAGT 59.559 61.111 0.00 0.00 0.00 3.85
6142 10514 1.978617 GTGTGGGGGCATTGGAGTG 60.979 63.158 0.00 0.00 0.00 3.51
6143 10515 2.362889 GTGGGGGCATTGGAGTGG 60.363 66.667 0.00 0.00 0.00 4.00
6144 10516 2.863484 TGGGGGCATTGGAGTGGT 60.863 61.111 0.00 0.00 0.00 4.16
6145 10517 1.542628 TGGGGGCATTGGAGTGGTA 60.543 57.895 0.00 0.00 0.00 3.25
6146 10518 1.143329 TGGGGGCATTGGAGTGGTAA 61.143 55.000 0.00 0.00 0.00 2.85
6147 10519 0.261696 GGGGGCATTGGAGTGGTAAT 59.738 55.000 0.00 0.00 0.00 1.89
6148 10520 1.402787 GGGGCATTGGAGTGGTAATG 58.597 55.000 0.00 0.00 37.35 1.90
6149 10521 1.064017 GGGGCATTGGAGTGGTAATGA 60.064 52.381 0.00 0.00 36.61 2.57
6150 10522 2.301346 GGGCATTGGAGTGGTAATGAG 58.699 52.381 0.00 0.00 36.61 2.90
6151 10523 2.301346 GGCATTGGAGTGGTAATGAGG 58.699 52.381 0.00 0.00 36.61 3.86
6152 10524 2.301346 GCATTGGAGTGGTAATGAGGG 58.699 52.381 0.00 0.00 36.61 4.30
6153 10525 2.301346 CATTGGAGTGGTAATGAGGGC 58.699 52.381 0.00 0.00 36.61 5.19
6154 10526 0.623723 TTGGAGTGGTAATGAGGGCC 59.376 55.000 0.00 0.00 0.00 5.80
6155 10527 1.146263 GGAGTGGTAATGAGGGCCG 59.854 63.158 0.00 0.00 0.00 6.13
6156 10528 1.146263 GAGTGGTAATGAGGGCCGG 59.854 63.158 0.00 0.00 0.00 6.13
6157 10529 1.306654 AGTGGTAATGAGGGCCGGA 60.307 57.895 5.05 0.00 0.00 5.14
6158 10530 1.153229 GTGGTAATGAGGGCCGGAC 60.153 63.158 5.05 0.00 0.00 4.79
6159 10531 2.372074 TGGTAATGAGGGCCGGACC 61.372 63.158 22.85 22.85 37.93 4.46
6160 10532 2.372074 GGTAATGAGGGCCGGACCA 61.372 63.158 32.91 9.72 42.05 4.02
6161 10533 1.705997 GGTAATGAGGGCCGGACCAT 61.706 60.000 32.91 16.32 42.05 3.55
6162 10534 1.053424 GTAATGAGGGCCGGACCATA 58.947 55.000 32.91 18.38 42.05 2.74
6163 10535 1.418637 GTAATGAGGGCCGGACCATAA 59.581 52.381 32.91 14.57 42.05 1.90
6164 10536 0.923358 AATGAGGGCCGGACCATAAA 59.077 50.000 32.91 11.47 42.05 1.40
6165 10537 0.923358 ATGAGGGCCGGACCATAAAA 59.077 50.000 32.91 9.29 42.05 1.52
6166 10538 0.699399 TGAGGGCCGGACCATAAAAA 59.301 50.000 32.91 3.40 42.05 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.320352 ACGCAATTTCCTAACAAAAGTTTATTT 57.680 25.926 0.00 0.00 0.00 1.40
12 13 8.880878 ACGCAATTTCCTAACAAAAGTTTATT 57.119 26.923 0.00 0.00 0.00 1.40
13 14 8.760569 CAACGCAATTTCCTAACAAAAGTTTAT 58.239 29.630 0.00 0.00 0.00 1.40
14 15 7.760340 ACAACGCAATTTCCTAACAAAAGTTTA 59.240 29.630 0.00 0.00 0.00 2.01
15 16 6.592220 ACAACGCAATTTCCTAACAAAAGTTT 59.408 30.769 0.00 0.00 0.00 2.66
16 17 6.103330 ACAACGCAATTTCCTAACAAAAGTT 58.897 32.000 0.00 0.00 0.00 2.66
17 18 5.656480 ACAACGCAATTTCCTAACAAAAGT 58.344 33.333 0.00 0.00 0.00 2.66
18 19 6.915843 AGTACAACGCAATTTCCTAACAAAAG 59.084 34.615 0.00 0.00 0.00 2.27
19 20 6.797454 AGTACAACGCAATTTCCTAACAAAA 58.203 32.000 0.00 0.00 0.00 2.44
20 21 6.380095 AGTACAACGCAATTTCCTAACAAA 57.620 33.333 0.00 0.00 0.00 2.83
21 22 5.049267 GGAGTACAACGCAATTTCCTAACAA 60.049 40.000 0.00 0.00 0.00 2.83
22 23 4.453136 GGAGTACAACGCAATTTCCTAACA 59.547 41.667 0.00 0.00 0.00 2.41
23 24 4.453136 TGGAGTACAACGCAATTTCCTAAC 59.547 41.667 0.00 0.00 0.00 2.34
24 25 4.643463 TGGAGTACAACGCAATTTCCTAA 58.357 39.130 0.00 0.00 0.00 2.69
25 26 4.274602 TGGAGTACAACGCAATTTCCTA 57.725 40.909 0.00 0.00 0.00 2.94
26 27 3.134574 TGGAGTACAACGCAATTTCCT 57.865 42.857 0.00 0.00 0.00 3.36
27 28 3.181500 GGATGGAGTACAACGCAATTTCC 60.181 47.826 0.00 0.00 0.00 3.13
28 29 3.485216 CGGATGGAGTACAACGCAATTTC 60.485 47.826 0.00 0.00 0.00 2.17
29 30 2.418628 CGGATGGAGTACAACGCAATTT 59.581 45.455 0.00 0.00 0.00 1.82
30 31 2.006888 CGGATGGAGTACAACGCAATT 58.993 47.619 0.00 0.00 0.00 2.32
31 32 1.651987 CGGATGGAGTACAACGCAAT 58.348 50.000 0.00 0.00 0.00 3.56
32 33 3.131326 CGGATGGAGTACAACGCAA 57.869 52.632 0.00 0.00 0.00 4.85
33 34 4.902308 CGGATGGAGTACAACGCA 57.098 55.556 0.00 0.00 0.00 5.24
34 35 3.395669 GCGGATGGAGTACAACGC 58.604 61.111 11.36 11.36 46.69 4.84
35 36 0.999406 CAAGCGGATGGAGTACAACG 59.001 55.000 0.00 0.00 36.83 4.10
36 37 1.066430 TCCAAGCGGATGGAGTACAAC 60.066 52.381 5.01 0.00 44.52 3.32
37 38 1.271856 TCCAAGCGGATGGAGTACAA 58.728 50.000 5.01 0.00 44.52 2.41
38 39 2.985001 TCCAAGCGGATGGAGTACA 58.015 52.632 5.01 0.00 44.52 2.90
44 45 4.339247 AGACAAATAATTCCAAGCGGATGG 59.661 41.667 0.31 0.31 42.41 3.51
45 46 5.505173 AGACAAATAATTCCAAGCGGATG 57.495 39.130 0.00 0.00 42.41 3.51
46 47 4.273480 CGAGACAAATAATTCCAAGCGGAT 59.727 41.667 0.00 0.00 42.41 4.18
47 48 3.621268 CGAGACAAATAATTCCAAGCGGA 59.379 43.478 0.00 0.00 40.60 5.54
48 49 3.621268 TCGAGACAAATAATTCCAAGCGG 59.379 43.478 0.00 0.00 0.00 5.52
49 50 4.857871 TCGAGACAAATAATTCCAAGCG 57.142 40.909 0.00 0.00 0.00 4.68
50 51 7.009540 CCATTTTCGAGACAAATAATTCCAAGC 59.990 37.037 0.00 0.00 0.00 4.01
51 52 8.243426 TCCATTTTCGAGACAAATAATTCCAAG 58.757 33.333 0.00 0.00 0.00 3.61
52 53 8.116651 TCCATTTTCGAGACAAATAATTCCAA 57.883 30.769 0.00 0.00 0.00 3.53
53 54 7.695480 TCCATTTTCGAGACAAATAATTCCA 57.305 32.000 0.00 0.00 0.00 3.53
54 55 8.190784 ACATCCATTTTCGAGACAAATAATTCC 58.809 33.333 0.00 0.00 0.00 3.01
58 59 9.613428 AGATACATCCATTTTCGAGACAAATAA 57.387 29.630 0.00 0.00 0.00 1.40
60 61 9.265901 CTAGATACATCCATTTTCGAGACAAAT 57.734 33.333 0.00 0.00 0.00 2.32
61 62 8.474831 TCTAGATACATCCATTTTCGAGACAAA 58.525 33.333 0.00 0.00 0.00 2.83
62 63 8.007405 TCTAGATACATCCATTTTCGAGACAA 57.993 34.615 0.00 0.00 0.00 3.18
63 64 7.582667 TCTAGATACATCCATTTTCGAGACA 57.417 36.000 0.00 0.00 0.00 3.41
64 65 8.138712 AGTTCTAGATACATCCATTTTCGAGAC 58.861 37.037 0.00 0.00 0.00 3.36
65 66 8.239038 AGTTCTAGATACATCCATTTTCGAGA 57.761 34.615 0.00 0.00 0.00 4.04
66 67 9.967346 TTAGTTCTAGATACATCCATTTTCGAG 57.033 33.333 0.00 0.00 0.00 4.04
90 91 9.836076 CGAATGGATGTATCTAGACGTATTTTA 57.164 33.333 0.00 0.00 0.00 1.52
91 92 8.358148 ACGAATGGATGTATCTAGACGTATTTT 58.642 33.333 0.00 0.00 33.94 1.82
92 93 7.808381 CACGAATGGATGTATCTAGACGTATTT 59.192 37.037 0.00 0.00 33.94 1.40
93 94 7.306213 CACGAATGGATGTATCTAGACGTATT 58.694 38.462 0.00 0.00 33.94 1.89
94 95 6.623114 GCACGAATGGATGTATCTAGACGTAT 60.623 42.308 0.00 0.00 33.94 3.06
95 96 5.334646 GCACGAATGGATGTATCTAGACGTA 60.335 44.000 0.00 0.00 33.94 3.57
96 97 4.556898 GCACGAATGGATGTATCTAGACGT 60.557 45.833 0.00 0.00 35.11 4.34
97 98 3.914966 GCACGAATGGATGTATCTAGACG 59.085 47.826 0.00 0.00 0.00 4.18
98 99 4.871513 TGCACGAATGGATGTATCTAGAC 58.128 43.478 0.00 0.00 0.00 2.59
99 100 5.163457 TGTTGCACGAATGGATGTATCTAGA 60.163 40.000 0.00 0.00 0.00 2.43
100 101 5.049828 TGTTGCACGAATGGATGTATCTAG 58.950 41.667 0.00 0.00 0.00 2.43
101 102 5.017294 TGTTGCACGAATGGATGTATCTA 57.983 39.130 0.00 0.00 0.00 1.98
102 103 3.872696 TGTTGCACGAATGGATGTATCT 58.127 40.909 0.00 0.00 0.00 1.98
103 104 4.094887 ACTTGTTGCACGAATGGATGTATC 59.905 41.667 0.00 0.00 0.00 2.24
104 105 4.009675 ACTTGTTGCACGAATGGATGTAT 58.990 39.130 0.00 0.00 0.00 2.29
105 106 3.407698 ACTTGTTGCACGAATGGATGTA 58.592 40.909 0.00 0.00 0.00 2.29
106 107 2.229792 ACTTGTTGCACGAATGGATGT 58.770 42.857 0.00 0.00 0.00 3.06
107 108 2.995466 ACTTGTTGCACGAATGGATG 57.005 45.000 0.00 0.00 0.00 3.51
108 109 5.393027 GGAATTACTTGTTGCACGAATGGAT 60.393 40.000 0.00 0.00 0.00 3.41
109 110 4.083003 GGAATTACTTGTTGCACGAATGGA 60.083 41.667 0.00 0.00 0.00 3.41
110 111 4.165779 GGAATTACTTGTTGCACGAATGG 58.834 43.478 0.00 0.00 0.00 3.16
111 112 3.845775 CGGAATTACTTGTTGCACGAATG 59.154 43.478 0.00 0.00 0.00 2.67
112 113 3.749088 TCGGAATTACTTGTTGCACGAAT 59.251 39.130 0.00 0.00 0.00 3.34
113 114 3.132160 TCGGAATTACTTGTTGCACGAA 58.868 40.909 0.00 0.00 0.00 3.85
114 115 2.756829 TCGGAATTACTTGTTGCACGA 58.243 42.857 0.00 0.00 0.00 4.35
115 116 3.223157 GTTCGGAATTACTTGTTGCACG 58.777 45.455 0.00 0.00 0.00 5.34
116 117 3.223157 CGTTCGGAATTACTTGTTGCAC 58.777 45.455 0.00 0.00 0.00 4.57
117 118 2.224549 CCGTTCGGAATTACTTGTTGCA 59.775 45.455 5.19 0.00 0.00 4.08
118 119 2.481185 TCCGTTCGGAATTACTTGTTGC 59.519 45.455 11.66 0.00 0.00 4.17
119 120 3.124636 CCTCCGTTCGGAATTACTTGTTG 59.875 47.826 14.79 0.00 33.41 3.33
120 121 3.332034 CCTCCGTTCGGAATTACTTGTT 58.668 45.455 14.79 0.00 33.41 2.83
121 122 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
122 123 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
123 124 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
124 125 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
125 126 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
126 127 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
127 128 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
128 129 1.755380 CTTACTCCCTCCGTTCGGAAT 59.245 52.381 14.79 2.09 33.41 3.01
129 130 1.180029 CTTACTCCCTCCGTTCGGAA 58.820 55.000 14.79 0.04 33.41 4.30
130 131 0.038744 ACTTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
131 132 0.893447 AACTTACTCCCTCCGTTCGG 59.107 55.000 4.74 4.74 0.00 4.30
132 133 2.738013 AAACTTACTCCCTCCGTTCG 57.262 50.000 0.00 0.00 0.00 3.95
150 151 6.276847 ACAACGCAATTTGTATCCTCAAAAA 58.723 32.000 0.00 0.00 40.05 1.94
151 152 5.837437 ACAACGCAATTTGTATCCTCAAAA 58.163 33.333 0.00 0.00 40.05 2.44
152 153 5.446143 ACAACGCAATTTGTATCCTCAAA 57.554 34.783 0.00 0.00 37.96 2.69
153 154 6.205853 ACTTACAACGCAATTTGTATCCTCAA 59.794 34.615 0.00 0.00 40.74 3.02
154 155 5.703592 ACTTACAACGCAATTTGTATCCTCA 59.296 36.000 0.00 0.00 40.74 3.86
155 156 6.178239 ACTTACAACGCAATTTGTATCCTC 57.822 37.500 0.00 0.00 40.74 3.71
156 157 6.205853 TCAACTTACAACGCAATTTGTATCCT 59.794 34.615 0.00 0.00 40.74 3.24
157 158 6.375377 TCAACTTACAACGCAATTTGTATCC 58.625 36.000 0.00 0.00 40.74 2.59
158 159 8.365210 CAATCAACTTACAACGCAATTTGTATC 58.635 33.333 0.00 0.00 40.74 2.24
159 160 8.079203 TCAATCAACTTACAACGCAATTTGTAT 58.921 29.630 0.00 0.00 40.74 2.29
160 161 7.418408 TCAATCAACTTACAACGCAATTTGTA 58.582 30.769 0.00 0.00 40.29 2.41
161 162 6.269315 TCAATCAACTTACAACGCAATTTGT 58.731 32.000 0.00 1.44 42.46 2.83
162 163 6.129115 CCTCAATCAACTTACAACGCAATTTG 60.129 38.462 0.00 0.00 0.00 2.32
222 223 4.261405 CCTTATTTGCGGTCAAAACACTCA 60.261 41.667 2.61 0.00 44.44 3.41
305 324 3.679389 CTTGGTCCTGCTTTGTATCTGT 58.321 45.455 0.00 0.00 0.00 3.41
474 493 1.095228 CACCAAGAACACGTGGCACT 61.095 55.000 21.57 12.59 36.82 4.40
715 3379 4.240096 CAGGCTCATTTCAAACAACATCC 58.760 43.478 0.00 0.00 0.00 3.51
719 3383 2.407090 GCCAGGCTCATTTCAAACAAC 58.593 47.619 3.29 0.00 0.00 3.32
731 3395 0.373716 CGACATTAAACGCCAGGCTC 59.626 55.000 10.54 0.00 0.00 4.70
738 3402 6.564854 AACTAGATACACGACATTAAACGC 57.435 37.500 0.00 0.00 0.00 4.84
842 3508 1.279271 AGATAAAACTGCCGCCAGACT 59.721 47.619 0.00 0.00 41.77 3.24
910 3598 1.005867 GGAGGGTACGTTTCGTGCA 60.006 57.895 11.66 0.00 43.70 4.57
920 3608 1.315257 TACTGCGTTCGGGAGGGTAC 61.315 60.000 0.00 0.00 38.63 3.34
1072 3772 1.251527 ACGAGCTCCATGTCGTCCTT 61.252 55.000 8.47 0.00 46.17 3.36
1295 4280 2.511145 GCTCTCGCTTGCTCCCTG 60.511 66.667 0.00 0.00 0.00 4.45
2003 4992 1.160137 GTGCCGAAGAATCTGCAGTT 58.840 50.000 14.67 7.43 44.89 3.16
2194 5186 0.323725 AAAGCATCCACGCCAATCCT 60.324 50.000 0.00 0.00 0.00 3.24
2603 5609 1.444119 AACACGCACAAGGCATTCGT 61.444 50.000 0.00 0.00 45.17 3.85
2666 5672 0.320421 AGACCCAATCGACACAACCG 60.320 55.000 0.00 0.00 0.00 4.44
2830 5836 5.582269 GCACTGTCAACTCAAGCATAATCTA 59.418 40.000 0.00 0.00 0.00 1.98
2840 5846 4.309933 CTCACATAGCACTGTCAACTCAA 58.690 43.478 0.00 0.00 0.00 3.02
3072 6078 1.176527 CATCGGAACAAGGTGCCAAT 58.823 50.000 0.00 0.00 28.25 3.16
3452 6459 3.154710 CCAAAGTCTAAACCCCCAAGAC 58.845 50.000 0.00 0.00 39.95 3.01
3601 6608 1.273048 TCCATCCATTTGCACAACTGC 59.727 47.619 0.00 0.00 44.52 4.40
3602 6609 2.353011 GGTCCATCCATTTGCACAACTG 60.353 50.000 0.00 0.00 35.97 3.16
3603 6610 1.895131 GGTCCATCCATTTGCACAACT 59.105 47.619 0.00 0.00 35.97 3.16
3604 6611 1.895131 AGGTCCATCCATTTGCACAAC 59.105 47.619 0.00 0.00 39.02 3.32
3605 6612 1.894466 CAGGTCCATCCATTTGCACAA 59.106 47.619 0.00 0.00 39.02 3.33
3606 6613 1.548081 CAGGTCCATCCATTTGCACA 58.452 50.000 0.00 0.00 39.02 4.57
3607 6614 0.819582 CCAGGTCCATCCATTTGCAC 59.180 55.000 0.00 0.00 39.02 4.57
3764 6780 2.092212 GTCATTCCCCACACCAGATCAT 60.092 50.000 0.00 0.00 0.00 2.45
4019 7112 4.653801 AGTGGCATTTATCCAATTAACCCC 59.346 41.667 0.00 0.00 35.01 4.95
4052 7145 3.005554 CAGTGGCATTTCTCAGATTCGT 58.994 45.455 0.00 0.00 0.00 3.85
4105 7198 7.480229 ACTGCGTTTTTAAAAGTTTGCAAAATC 59.520 29.630 14.67 2.18 0.00 2.17
4106 7199 7.270151 CACTGCGTTTTTAAAAGTTTGCAAAAT 59.730 29.630 14.67 10.45 0.00 1.82
4129 7222 5.096443 TCCAAACTTTGAAAAATGCCACT 57.904 34.783 2.87 0.00 0.00 4.00
4130 7223 5.809719 TTCCAAACTTTGAAAAATGCCAC 57.190 34.783 2.87 0.00 0.00 5.01
4157 7279 0.721718 GATTCCGAGAAACGCCACTG 59.278 55.000 0.00 0.00 41.07 3.66
4216 7338 9.143155 TGAACATGACATGGTATACTACACTAT 57.857 33.333 19.39 0.00 33.60 2.12
4294 7492 5.235305 ACACATCGAAAAATCCAGCATAC 57.765 39.130 0.00 0.00 0.00 2.39
4489 7688 5.710099 AGTATGAACAAAACCATCCATCGTT 59.290 36.000 0.00 0.00 0.00 3.85
4604 7807 5.241403 TGACCTGAAGAGAAGGCAAATTA 57.759 39.130 0.00 0.00 38.48 1.40
4883 8115 3.341629 CACATGGCCACCCTCCCT 61.342 66.667 8.16 0.00 0.00 4.20
5113 8345 1.609072 CGTAGAAGATCCCGATGAGCA 59.391 52.381 0.00 0.00 0.00 4.26
5230 8462 8.214364 ACTAGGAACCTATCTGAATTTTGATCC 58.786 37.037 0.80 0.00 0.00 3.36
5298 8534 3.857010 GCACCCAATTTTCTCCAACTTCG 60.857 47.826 0.00 0.00 0.00 3.79
5518 8762 9.454585 CATTCAGGTTGCAATATAAATACTGTG 57.545 33.333 0.59 0.00 0.00 3.66
5631 8879 4.077108 TGGAGTGATGAAGTACAGTACGT 58.923 43.478 5.02 1.59 0.00 3.57
5632 8880 4.696899 TGGAGTGATGAAGTACAGTACG 57.303 45.455 5.02 0.00 0.00 3.67
5643 8893 3.091545 GCCTTGGAAATTGGAGTGATGA 58.908 45.455 0.00 0.00 0.00 2.92
5659 8909 2.443255 AGTTGTATATGAGGGGGCCTTG 59.557 50.000 0.84 0.00 31.76 3.61
5668 8918 8.652810 TGATGACATGTTGAGTTGTATATGAG 57.347 34.615 0.00 0.00 0.00 2.90
5675 8925 8.394971 TCTTTTATGATGACATGTTGAGTTGT 57.605 30.769 0.00 0.00 37.87 3.32
5676 8926 9.285770 CATCTTTTATGATGACATGTTGAGTTG 57.714 33.333 0.00 0.00 44.71 3.16
5677 8927 8.464404 CCATCTTTTATGATGACATGTTGAGTT 58.536 33.333 0.00 0.00 44.71 3.01
5678 8928 7.830697 TCCATCTTTTATGATGACATGTTGAGT 59.169 33.333 0.00 0.00 44.71 3.41
5679 8929 8.217131 TCCATCTTTTATGATGACATGTTGAG 57.783 34.615 0.00 0.00 44.71 3.02
5725 10047 5.562307 CGAGTACCAGTATTAGGATTGACGG 60.562 48.000 0.00 0.00 0.00 4.79
5731 10053 4.106019 ACCCTCGAGTACCAGTATTAGGAT 59.894 45.833 12.31 0.00 0.00 3.24
5740 10062 3.278668 TTCTAGACCCTCGAGTACCAG 57.721 52.381 12.31 2.05 0.00 4.00
5748 10070 7.371936 CCTATTTTCTGTATTCTAGACCCTCG 58.628 42.308 0.00 0.00 0.00 4.63
5761 10132 3.452990 TCATGCGTCCCCTATTTTCTGTA 59.547 43.478 0.00 0.00 0.00 2.74
5822 10193 3.956848 AGAAGAAGCAAGGCAGAAAAGTT 59.043 39.130 0.00 0.00 0.00 2.66
5873 10244 2.719739 TGACTAGACGAGTACCCCTTG 58.280 52.381 0.00 0.00 39.06 3.61
5894 10265 3.436577 TTAGAACTCACCGAGTCTCCT 57.563 47.619 0.00 0.00 42.59 3.69
5898 10269 3.126514 TCGTCATTAGAACTCACCGAGTC 59.873 47.826 0.00 0.00 42.59 3.36
5902 10273 3.116300 CCATCGTCATTAGAACTCACCG 58.884 50.000 0.00 0.00 0.00 4.94
5903 10274 3.865745 CACCATCGTCATTAGAACTCACC 59.134 47.826 0.00 0.00 0.00 4.02
5918 10289 1.229428 CATCGAAATCCCCACCATCG 58.771 55.000 0.00 0.00 34.98 3.84
5948 10319 6.067217 AGCCTACACCACATAGAAGATTTT 57.933 37.500 0.00 0.00 0.00 1.82
5978 10349 1.978542 CACCGTAGACACTCCTTTCG 58.021 55.000 0.00 0.00 0.00 3.46
5991 10362 1.229082 AGGAACCAGAGGCACCGTA 60.229 57.895 0.00 0.00 0.00 4.02
6003 10374 7.819900 CCATAACATAGCTGTATAAGAGGAACC 59.180 40.741 0.00 0.00 33.36 3.62
6071 10443 1.523934 GTGAAACAACACTACGACCGG 59.476 52.381 0.00 0.00 37.73 5.28
6089 10461 5.403897 ACGAACACTCTACAATGTTTGTG 57.596 39.130 8.78 1.43 46.82 3.33
6091 10463 4.024893 AGCACGAACACTCTACAATGTTTG 60.025 41.667 0.00 3.36 43.23 2.93
6092 10464 4.127171 AGCACGAACACTCTACAATGTTT 58.873 39.130 0.00 0.00 39.13 2.83
6093 10465 3.728845 AGCACGAACACTCTACAATGTT 58.271 40.909 0.00 0.00 41.70 2.71
6094 10466 3.386768 AGCACGAACACTCTACAATGT 57.613 42.857 0.00 0.00 0.00 2.71
6095 10467 3.990469 AGAAGCACGAACACTCTACAATG 59.010 43.478 0.00 0.00 0.00 2.82
6096 10468 4.238514 GAGAAGCACGAACACTCTACAAT 58.761 43.478 0.00 0.00 0.00 2.71
6097 10469 3.552273 GGAGAAGCACGAACACTCTACAA 60.552 47.826 0.00 0.00 0.00 2.41
6098 10470 2.030185 GGAGAAGCACGAACACTCTACA 60.030 50.000 0.00 0.00 0.00 2.74
6099 10471 2.229302 AGGAGAAGCACGAACACTCTAC 59.771 50.000 0.00 0.00 0.00 2.59
6100 10472 2.488545 GAGGAGAAGCACGAACACTCTA 59.511 50.000 0.00 0.00 0.00 2.43
6101 10473 1.271102 GAGGAGAAGCACGAACACTCT 59.729 52.381 0.00 0.00 0.00 3.24
6102 10474 1.704070 GAGGAGAAGCACGAACACTC 58.296 55.000 0.00 0.00 0.00 3.51
6103 10475 0.039074 CGAGGAGAAGCACGAACACT 60.039 55.000 0.00 0.00 0.00 3.55
6104 10476 1.009389 CCGAGGAGAAGCACGAACAC 61.009 60.000 0.00 0.00 0.00 3.32
6105 10477 1.289066 CCGAGGAGAAGCACGAACA 59.711 57.895 0.00 0.00 0.00 3.18
6106 10478 1.446272 CCCGAGGAGAAGCACGAAC 60.446 63.158 0.00 0.00 0.00 3.95
6107 10479 1.906824 ACCCGAGGAGAAGCACGAA 60.907 57.895 0.00 0.00 0.00 3.85
6108 10480 2.282958 ACCCGAGGAGAAGCACGA 60.283 61.111 0.00 0.00 0.00 4.35
6109 10481 2.125912 CACCCGAGGAGAAGCACG 60.126 66.667 0.00 0.00 0.00 5.34
6110 10482 1.374758 CACACCCGAGGAGAAGCAC 60.375 63.158 0.00 0.00 0.00 4.40
6111 10483 2.583441 CCACACCCGAGGAGAAGCA 61.583 63.158 0.00 0.00 0.00 3.91
6112 10484 2.266055 CCACACCCGAGGAGAAGC 59.734 66.667 0.00 0.00 0.00 3.86
6113 10485 2.660064 CCCCACACCCGAGGAGAAG 61.660 68.421 0.00 0.00 0.00 2.85
6114 10486 2.606519 CCCCACACCCGAGGAGAA 60.607 66.667 0.00 0.00 0.00 2.87
6115 10487 4.715130 CCCCCACACCCGAGGAGA 62.715 72.222 0.00 0.00 0.00 3.71
6119 10491 4.047125 AATGCCCCCACACCCGAG 62.047 66.667 0.00 0.00 0.00 4.63
6120 10492 4.358841 CAATGCCCCCACACCCGA 62.359 66.667 0.00 0.00 0.00 5.14
6122 10494 3.963124 CTCCAATGCCCCCACACCC 62.963 68.421 0.00 0.00 0.00 4.61
6123 10495 2.362889 CTCCAATGCCCCCACACC 60.363 66.667 0.00 0.00 0.00 4.16
6124 10496 1.978617 CACTCCAATGCCCCCACAC 60.979 63.158 0.00 0.00 0.00 3.82
6125 10497 2.440147 CACTCCAATGCCCCCACA 59.560 61.111 0.00 0.00 0.00 4.17
6126 10498 1.858739 TACCACTCCAATGCCCCCAC 61.859 60.000 0.00 0.00 0.00 4.61
6127 10499 1.143329 TTACCACTCCAATGCCCCCA 61.143 55.000 0.00 0.00 0.00 4.96
6128 10500 0.261696 ATTACCACTCCAATGCCCCC 59.738 55.000 0.00 0.00 0.00 5.40
6129 10501 1.064017 TCATTACCACTCCAATGCCCC 60.064 52.381 0.00 0.00 33.14 5.80
6130 10502 2.301346 CTCATTACCACTCCAATGCCC 58.699 52.381 0.00 0.00 33.14 5.36
6131 10503 2.301346 CCTCATTACCACTCCAATGCC 58.699 52.381 0.00 0.00 33.14 4.40
6132 10504 2.301346 CCCTCATTACCACTCCAATGC 58.699 52.381 0.00 0.00 33.14 3.56
6133 10505 2.301346 GCCCTCATTACCACTCCAATG 58.699 52.381 0.00 0.00 34.17 2.82
6134 10506 1.215423 GGCCCTCATTACCACTCCAAT 59.785 52.381 0.00 0.00 0.00 3.16
6135 10507 0.623723 GGCCCTCATTACCACTCCAA 59.376 55.000 0.00 0.00 0.00 3.53
6136 10508 1.622607 CGGCCCTCATTACCACTCCA 61.623 60.000 0.00 0.00 0.00 3.86
6137 10509 1.146263 CGGCCCTCATTACCACTCC 59.854 63.158 0.00 0.00 0.00 3.85
6138 10510 1.146263 CCGGCCCTCATTACCACTC 59.854 63.158 0.00 0.00 0.00 3.51
6139 10511 1.306654 TCCGGCCCTCATTACCACT 60.307 57.895 0.00 0.00 0.00 4.00
6140 10512 1.153229 GTCCGGCCCTCATTACCAC 60.153 63.158 0.00 0.00 0.00 4.16
6141 10513 2.372074 GGTCCGGCCCTCATTACCA 61.372 63.158 0.00 0.00 0.00 3.25
6142 10514 1.705997 ATGGTCCGGCCCTCATTACC 61.706 60.000 1.80 0.00 36.04 2.85
6143 10515 1.053424 TATGGTCCGGCCCTCATTAC 58.947 55.000 1.80 0.00 36.04 1.89
6144 10516 1.809133 TTATGGTCCGGCCCTCATTA 58.191 50.000 1.80 0.00 36.04 1.90
6145 10517 0.923358 TTTATGGTCCGGCCCTCATT 59.077 50.000 1.80 0.00 36.04 2.57
6146 10518 0.923358 TTTTATGGTCCGGCCCTCAT 59.077 50.000 1.80 3.61 36.04 2.90
6147 10519 0.699399 TTTTTATGGTCCGGCCCTCA 59.301 50.000 1.80 0.00 36.04 3.86
6148 10520 3.581163 TTTTTATGGTCCGGCCCTC 57.419 52.632 1.80 0.00 36.04 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.