Multiple sequence alignment - TraesCS2B01G083500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G083500 chr2B 100.000 8601 0 0 1 8601 46603129 46594529 0.000000e+00 15884.0
1 TraesCS2B01G083500 chr2B 96.117 103 4 0 7662 7764 418953562 418953664 1.480000e-37 169.0
2 TraesCS2B01G083500 chr2B 95.192 104 5 0 7661 7764 403102739 403102842 1.920000e-36 165.0
3 TraesCS2B01G083500 chr2B 95.146 103 5 0 7662 7764 457144387 457144489 6.910000e-36 163.0
4 TraesCS2B01G083500 chr2B 93.519 108 7 0 7665 7772 297434345 297434452 2.480000e-35 161.0
5 TraesCS2B01G083500 chr7A 99.576 3304 13 1 2858 6160 265437952 265441255 0.000000e+00 6023.0
6 TraesCS2B01G083500 chr5A 99.486 3309 14 2 2858 6166 174598288 174601593 0.000000e+00 6013.0
7 TraesCS2B01G083500 chr2A 99.457 3313 12 3 2858 6166 676076334 676079644 0.000000e+00 6013.0
8 TraesCS2B01G083500 chr3B 99.426 3311 13 3 2858 6164 695918346 695915038 0.000000e+00 6004.0
9 TraesCS2B01G083500 chr6A 99.485 3299 17 0 2858 6156 515931838 515928540 0.000000e+00 5999.0
10 TraesCS2B01G083500 chr6A 89.700 1835 119 21 969 2767 16460764 16458964 0.000000e+00 2278.0
11 TraesCS2B01G083500 chr6A 89.153 1346 73 22 6349 7651 16458455 16457140 0.000000e+00 1609.0
12 TraesCS2B01G083500 chr6A 88.657 670 66 10 7761 8423 16457133 16456467 0.000000e+00 808.0
13 TraesCS2B01G083500 chr6A 92.424 66 5 0 861 926 16460840 16460775 2.560000e-15 95.3
14 TraesCS2B01G083500 chr6A 97.436 39 1 0 583 621 16461244 16461206 5.570000e-07 67.6
15 TraesCS2B01G083500 chr1A 99.395 3305 18 1 2858 6162 7340240 7343542 0.000000e+00 5991.0
16 TraesCS2B01G083500 chr1A 82.270 1568 200 35 996 2516 392786749 392785213 0.000000e+00 1284.0
17 TraesCS2B01G083500 chr1A 87.940 199 24 0 6900 7098 392784158 392783960 1.440000e-57 235.0
18 TraesCS2B01G083500 chr1A 93.878 49 3 0 8318 8366 345531930 345531978 3.330000e-09 75.0
19 TraesCS2B01G083500 chr1A 91.111 45 3 1 2759 2803 511013199 511013156 9.320000e-05 60.2
20 TraesCS2B01G083500 chr5B 99.336 3312 17 2 2858 6166 306399047 306402356 0.000000e+00 5989.0
21 TraesCS2B01G083500 chr5B 96.970 99 3 0 7666 7764 502503907 502504005 5.340000e-37 167.0
22 TraesCS2B01G083500 chr5B 92.793 111 6 2 7655 7764 391643603 391643712 8.940000e-35 159.0
23 TraesCS2B01G083500 chr5B 95.349 43 2 0 2757 2799 377698118 377698160 1.550000e-07 69.4
24 TraesCS2B01G083500 chr5B 93.478 46 2 1 2754 2799 106266061 106266017 5.570000e-07 67.6
25 TraesCS2B01G083500 chr6B 99.335 3309 20 1 2858 6166 606299957 606303263 0.000000e+00 5987.0
26 TraesCS2B01G083500 chr6B 99.276 3316 18 3 2858 6170 339386338 339383026 0.000000e+00 5986.0
27 TraesCS2B01G083500 chr6B 88.573 2074 169 31 592 2618 28002062 28004114 0.000000e+00 2455.0
28 TraesCS2B01G083500 chr6B 90.698 1462 85 15 1340 2765 27944703 27943257 0.000000e+00 1899.0
29 TraesCS2B01G083500 chr6B 90.441 1339 73 14 6341 7649 28004885 28006198 0.000000e+00 1712.0
30 TraesCS2B01G083500 chr6B 92.299 870 44 4 6817 7664 27942397 27941529 0.000000e+00 1214.0
31 TraesCS2B01G083500 chr6B 89.203 991 67 7 56 1008 28000473 28001461 0.000000e+00 1201.0
32 TraesCS2B01G083500 chr6B 87.592 814 78 18 7762 8563 27941526 27940724 0.000000e+00 922.0
33 TraesCS2B01G083500 chr6B 89.197 685 52 12 6160 6835 27943133 27942462 0.000000e+00 835.0
34 TraesCS2B01G083500 chr6B 87.310 591 66 2 1963 2553 27996698 27997279 0.000000e+00 667.0
35 TraesCS2B01G083500 chr6B 83.644 752 45 24 416 1164 27945482 27944806 3.390000e-178 636.0
36 TraesCS2B01G083500 chr6B 84.433 591 62 9 7095 7669 28724981 28724405 9.760000e-154 555.0
37 TraesCS2B01G083500 chr6B 83.490 533 56 15 7095 7609 27998317 27998835 1.310000e-127 468.0
38 TraesCS2B01G083500 chr6B 85.532 470 40 13 7761 8218 28006208 28006661 4.700000e-127 466.0
39 TraesCS2B01G083500 chr6B 81.930 487 55 14 7761 8230 59300946 59300476 1.750000e-101 381.0
40 TraesCS2B01G083500 chr6B 88.372 301 31 4 8231 8530 28010332 28010629 8.210000e-95 359.0
41 TraesCS2B01G083500 chr6B 81.905 420 47 21 1272 1680 27995781 27996182 2.320000e-85 327.0
42 TraesCS2B01G083500 chr6B 86.758 219 25 4 7776 7991 28724392 28724175 3.100000e-59 241.0
43 TraesCS2B01G083500 chr6B 93.519 108 7 0 7665 7772 424080602 424080495 2.480000e-35 161.0
44 TraesCS2B01G083500 chr6B 93.519 108 7 0 7665 7772 424303315 424303208 2.480000e-35 161.0
45 TraesCS2B01G083500 chr6B 93.478 46 2 1 2754 2799 455896084 455896040 5.570000e-07 67.6
46 TraesCS2B01G083500 chr6D 89.734 1802 114 20 969 2725 16196746 16194971 0.000000e+00 2237.0
47 TraesCS2B01G083500 chr6D 89.240 1552 94 27 6169 7672 16192257 16190731 0.000000e+00 1873.0
48 TraesCS2B01G083500 chr6D 85.496 786 73 21 7761 8541 16190737 16189988 0.000000e+00 782.0
49 TraesCS2B01G083500 chr6D 85.378 595 63 13 7092 7668 16380584 16381172 5.750000e-166 595.0
50 TraesCS2B01G083500 chr6D 92.708 288 21 0 7385 7672 16232612 16232325 4.800000e-112 416.0
51 TraesCS2B01G083500 chr6D 82.708 480 51 10 4 455 16197784 16197309 1.740000e-106 398.0
52 TraesCS2B01G083500 chr6D 95.652 46 2 0 2758 2803 273915238 273915193 3.330000e-09 75.0
53 TraesCS2B01G083500 chr6D 97.619 42 0 1 2758 2799 293048613 293048653 4.310000e-08 71.3
54 TraesCS2B01G083500 chr6D 95.122 41 2 0 2759 2799 162106508 162106548 2.000000e-06 65.8
55 TraesCS2B01G083500 chr6D 93.182 44 3 0 2756 2799 429762114 429762157 2.000000e-06 65.8
56 TraesCS2B01G083500 chr6D 100.000 29 0 0 8396 8424 16190072 16190044 4.000000e-03 54.7
57 TraesCS2B01G083500 chr1D 81.072 1754 236 47 996 2687 313216281 313214562 0.000000e+00 1312.0
58 TraesCS2B01G083500 chr1D 89.447 199 21 0 6900 7098 313213654 313213456 1.430000e-62 252.0
59 TraesCS2B01G083500 chr1D 100.000 37 0 0 2763 2799 181637697 181637733 1.550000e-07 69.4
60 TraesCS2B01G083500 chr1D 93.333 45 1 2 2755 2799 180851565 180851607 2.000000e-06 65.8
61 TraesCS2B01G083500 chr1D 100.000 34 0 0 2766 2799 94120836 94120803 7.210000e-06 63.9
62 TraesCS2B01G083500 chr1D 94.872 39 1 1 2761 2798 460657109 460657071 9.320000e-05 60.2
63 TraesCS2B01G083500 chr1B 81.851 1642 205 45 996 2584 423593221 423591620 0.000000e+00 1295.0
64 TraesCS2B01G083500 chr1B 95.192 104 4 1 7664 7767 415223383 415223281 6.910000e-36 163.0
65 TraesCS2B01G083500 chr3D 93.878 49 3 0 8318 8366 477570740 477570692 3.330000e-09 75.0
66 TraesCS2B01G083500 chr3D 92.000 50 2 2 2752 2799 563990310 563990359 1.550000e-07 69.4
67 TraesCS2B01G083500 chr3D 93.182 44 3 0 2756 2799 391933823 391933780 2.000000e-06 65.8
68 TraesCS2B01G083500 chr3D 93.182 44 3 0 2756 2799 417889530 417889573 2.000000e-06 65.8
69 TraesCS2B01G083500 chr7B 95.556 45 2 0 2755 2799 22768965 22768921 1.200000e-08 73.1
70 TraesCS2B01G083500 chr7B 95.556 45 2 0 2755 2799 22830263 22830219 1.200000e-08 73.1
71 TraesCS2B01G083500 chr7B 95.556 45 2 0 2755 2799 22961006 22960962 1.200000e-08 73.1
72 TraesCS2B01G083500 chr4D 97.561 41 1 0 2759 2799 238023755 238023715 4.310000e-08 71.3
73 TraesCS2B01G083500 chr4D 93.182 44 3 0 2756 2799 140714887 140714844 2.000000e-06 65.8
74 TraesCS2B01G083500 chr4D 100.000 34 0 0 2766 2799 319829838 319829805 7.210000e-06 63.9
75 TraesCS2B01G083500 chr4D 94.872 39 2 0 2761 2799 110117662 110117700 2.590000e-05 62.1
76 TraesCS2B01G083500 chr4D 100.000 32 0 0 2766 2797 382382603 382382572 9.320000e-05 60.2
77 TraesCS2B01G083500 chr2D 97.500 40 1 0 2760 2799 459046223 459046262 1.550000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G083500 chr2B 46594529 46603129 8600 True 15884.000 15884 100.00000 1 8601 1 chr2B.!!$R1 8600
1 TraesCS2B01G083500 chr7A 265437952 265441255 3303 False 6023.000 6023 99.57600 2858 6160 1 chr7A.!!$F1 3302
2 TraesCS2B01G083500 chr5A 174598288 174601593 3305 False 6013.000 6013 99.48600 2858 6166 1 chr5A.!!$F1 3308
3 TraesCS2B01G083500 chr2A 676076334 676079644 3310 False 6013.000 6013 99.45700 2858 6166 1 chr2A.!!$F1 3308
4 TraesCS2B01G083500 chr3B 695915038 695918346 3308 True 6004.000 6004 99.42600 2858 6164 1 chr3B.!!$R1 3306
5 TraesCS2B01G083500 chr6A 515928540 515931838 3298 True 5999.000 5999 99.48500 2858 6156 1 chr6A.!!$R1 3298
6 TraesCS2B01G083500 chr6A 16456467 16461244 4777 True 971.580 2278 91.47400 583 8423 5 chr6A.!!$R2 7840
7 TraesCS2B01G083500 chr1A 7340240 7343542 3302 False 5991.000 5991 99.39500 2858 6162 1 chr1A.!!$F1 3304
8 TraesCS2B01G083500 chr1A 392783960 392786749 2789 True 759.500 1284 85.10500 996 7098 2 chr1A.!!$R2 6102
9 TraesCS2B01G083500 chr5B 306399047 306402356 3309 False 5989.000 5989 99.33600 2858 6166 1 chr5B.!!$F1 3308
10 TraesCS2B01G083500 chr6B 606299957 606303263 3306 False 5987.000 5987 99.33500 2858 6166 1 chr6B.!!$F1 3308
11 TraesCS2B01G083500 chr6B 339383026 339386338 3312 True 5986.000 5986 99.27600 2858 6170 1 chr6B.!!$R2 3312
12 TraesCS2B01G083500 chr6B 27940724 27945482 4758 True 1101.200 1899 88.68600 416 8563 5 chr6B.!!$R6 8147
13 TraesCS2B01G083500 chr6B 27995781 28010629 14848 False 956.875 2455 86.85325 56 8530 8 chr6B.!!$F2 8474
14 TraesCS2B01G083500 chr6B 28724175 28724981 806 True 398.000 555 85.59550 7095 7991 2 chr6B.!!$R7 896
15 TraesCS2B01G083500 chr6D 16189988 16197784 7796 True 1068.940 2237 89.43560 4 8541 5 chr6D.!!$R3 8537
16 TraesCS2B01G083500 chr6D 16380584 16381172 588 False 595.000 595 85.37800 7092 7668 1 chr6D.!!$F1 576
17 TraesCS2B01G083500 chr1D 313213456 313216281 2825 True 782.000 1312 85.25950 996 7098 2 chr1D.!!$R3 6102
18 TraesCS2B01G083500 chr1B 423591620 423593221 1601 True 1295.000 1295 81.85100 996 2584 1 chr1B.!!$R2 1588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
389 5060 0.460284 CAAACCGCGGCTCAGTAGAT 60.460 55.000 28.58 0.0 0.00 1.98 F
1237 7056 0.340208 TTCCCAACCCACCAAAACCT 59.660 50.000 0.00 0.0 0.00 3.50 F
1241 7075 0.753848 CAACCCACCAAAACCTCGGT 60.754 55.000 0.00 0.0 35.27 4.69 F
1799 7677 0.812549 TGCCGCTGTACTCGACATTA 59.187 50.000 9.16 0.0 37.45 1.90 F
2778 11337 1.066430 TGCAATGTACTCCCTCCGTTC 60.066 52.381 0.00 0.0 0.00 3.95 F
3366 12011 0.543174 AGGACAGAAGGCGAAGGAGT 60.543 55.000 0.00 0.0 0.00 3.85 F
4739 13384 9.777382 GCGATAGTATGGCTAACCAAGCTTTTG 62.777 44.444 9.67 0.0 45.33 2.44 F
6210 14866 0.034670 ATGCTGGAGTTTCTGGCCTC 60.035 55.000 3.32 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1691 7565 0.606401 CCGCCCATTCACACTTCACT 60.606 55.000 0.00 0.00 0.00 3.41 R
2431 8319 0.827925 AAGCTCCTCACTGGTGTCGA 60.828 55.000 0.00 0.00 37.07 4.20 R
2434 8322 1.757306 CCAAGCTCCTCACTGGTGT 59.243 57.895 0.00 0.00 37.07 4.16 R
3366 12011 1.209504 CTTGAAGCCGGTATCCTCCAA 59.790 52.381 1.90 0.00 0.00 3.53 R
4739 13384 3.057019 GTTTGCCCGAAAAATGAGGTTC 58.943 45.455 0.00 0.00 0.00 3.62 R
5773 14427 0.664224 GGACTCGATCCTTCCTCGTC 59.336 60.000 6.63 0.00 45.22 4.20 R
6496 15495 0.973632 GTTTGAAACATGGGGTCCCC 59.026 55.000 21.64 21.64 45.71 4.81 R
7749 16924 0.468648 CCAATTACTCCCTCCGTCCC 59.531 60.000 0.00 0.00 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.838152 CGGAGGCACCCGGTGATG 62.838 72.222 22.37 1.39 45.43 3.07
33 34 1.901464 GGCACCCGGTGATGTGTTT 60.901 57.895 22.37 0.00 35.23 2.83
35 36 1.285641 CACCCGGTGATGTGTTTGC 59.714 57.895 12.68 0.00 35.23 3.68
77 4715 5.070847 ACAAGAAACCAAGGAAGCATGAATT 59.929 36.000 0.00 0.00 0.00 2.17
103 4741 9.116067 TCCATGAAGGAAAATTTAATACTACCG 57.884 33.333 0.00 0.00 45.65 4.02
105 4743 7.925043 TGAAGGAAAATTTAATACTACCGCA 57.075 32.000 0.00 0.00 0.00 5.69
114 4752 9.533253 AAATTTAATACTACCGCAACGTATACT 57.467 29.630 0.56 0.00 0.00 2.12
121 4759 4.220533 ACCGCAACGTATACTAGTCATC 57.779 45.455 0.00 0.00 0.00 2.92
122 4760 3.223953 CCGCAACGTATACTAGTCATCG 58.776 50.000 0.00 5.32 0.00 3.84
128 4766 6.527023 GCAACGTATACTAGTCATCGCAATAT 59.473 38.462 0.00 0.00 0.00 1.28
200 4838 4.535526 AGGCGCATAAATTTGAGGTTTT 57.464 36.364 10.83 0.00 0.00 2.43
221 4887 6.959671 TTTGTGGTTTTGTGAACTTTCATC 57.040 33.333 0.00 0.00 39.73 2.92
260 4927 9.833894 GCAAAAACATTAAATCAACGCATATAG 57.166 29.630 0.00 0.00 0.00 1.31
378 5049 1.584483 GATGAGCATGCAAACCGCG 60.584 57.895 21.98 0.00 46.97 6.46
383 5054 3.736100 CATGCAAACCGCGGCTCA 61.736 61.111 28.58 18.06 46.97 4.26
389 5060 0.460284 CAAACCGCGGCTCAGTAGAT 60.460 55.000 28.58 0.00 0.00 1.98
400 5071 3.570559 GCTCAGTAGATTCGATGTAGCC 58.429 50.000 0.00 0.00 0.00 3.93
439 5110 1.789464 CGAGATAGGCAAGCGAATGAC 59.211 52.381 0.00 0.00 0.00 3.06
452 5123 0.674895 GAATGACGCAAGGTGGAGCT 60.675 55.000 0.00 0.00 46.39 4.09
629 5322 4.344865 ATGGGCCGCCTGTTCGTT 62.345 61.111 9.86 0.00 0.00 3.85
645 5338 1.648720 GTTCGCTTGTGCTTGCTCA 59.351 52.632 0.00 0.00 36.97 4.26
685 5381 6.697892 GTCGGTATGTTATCTCAAGGAAGAAG 59.302 42.308 0.00 0.00 0.00 2.85
703 5402 1.584495 GGCGGTTGGCTTTTACTGG 59.416 57.895 0.00 0.00 42.94 4.00
759 5478 7.706179 GTGTTCATGAATTTGAGAAGTTTTCCA 59.294 33.333 12.12 0.00 0.00 3.53
822 5555 8.833231 TGTTGACCAGTTTTTAAAAATGTCAA 57.167 26.923 29.05 29.05 39.10 3.18
898 6693 4.261801 CATGTCAACCCTACTAACCCAAG 58.738 47.826 0.00 0.00 0.00 3.61
961 6759 1.208052 GTTCTGCAGCTAGGTGATCCA 59.792 52.381 25.66 12.63 35.89 3.41
1237 7056 0.340208 TTCCCAACCCACCAAAACCT 59.660 50.000 0.00 0.00 0.00 3.50
1241 7075 0.753848 CAACCCACCAAAACCTCGGT 60.754 55.000 0.00 0.00 35.27 4.69
1668 7538 8.702163 TCAACATATGTAGTGTCTTATGTGTG 57.298 34.615 9.21 0.00 38.10 3.82
1682 7556 2.357881 TGTGCAGGCGAGCAGAAG 60.358 61.111 7.90 0.00 46.69 2.85
1690 7564 2.105466 GCGAGCAGAAGCCTCAAGG 61.105 63.158 0.00 0.00 43.56 3.61
1691 7565 1.593787 CGAGCAGAAGCCTCAAGGA 59.406 57.895 0.00 0.00 43.56 3.36
1799 7677 0.812549 TGCCGCTGTACTCGACATTA 59.187 50.000 9.16 0.00 37.45 1.90
2114 7992 6.096987 AGTTGTCTCTGCCGATAGAAAGAATA 59.903 38.462 0.00 0.00 39.76 1.75
2289 8174 4.082136 GGGAGGTGAGTATTCCATATCGAC 60.082 50.000 0.00 0.00 32.50 4.20
2431 8319 3.746751 GCACCATCTATGAAGCCTGATGT 60.747 47.826 0.00 0.00 35.76 3.06
2434 8322 3.006217 CCATCTATGAAGCCTGATGTCGA 59.994 47.826 0.00 0.00 35.76 4.20
2448 8336 1.080434 GTCGACACCAGTGAGGAGC 60.080 63.158 11.55 0.00 41.22 4.70
2492 8380 4.342378 TGGACTCTTGTAGATGCCTATGAC 59.658 45.833 0.00 0.00 0.00 3.06
2527 8417 4.236935 GCACATGGTAATTGTTTGACCAG 58.763 43.478 0.00 0.00 46.11 4.00
2590 8491 3.324556 TCATGTCAGGTCTCATGTTGTCA 59.675 43.478 0.00 0.00 41.22 3.58
2654 8570 6.313411 AGCTTCTAGTACAGTAACTACGTCAG 59.687 42.308 0.00 0.00 0.00 3.51
2711 8709 3.936453 TGGTAGCCATGTCGTATTTTGTC 59.064 43.478 0.00 0.00 0.00 3.18
2717 8715 5.703592 AGCCATGTCGTATTTTGTCTGTTAA 59.296 36.000 0.00 0.00 0.00 2.01
2765 11324 4.163078 AGCCACTAGTCTATCTTGCAATGT 59.837 41.667 0.00 0.00 0.00 2.71
2766 11325 5.363868 AGCCACTAGTCTATCTTGCAATGTA 59.636 40.000 0.00 0.00 0.00 2.29
2767 11326 5.463724 GCCACTAGTCTATCTTGCAATGTAC 59.536 44.000 0.00 0.00 0.00 2.90
2768 11327 6.684111 GCCACTAGTCTATCTTGCAATGTACT 60.684 42.308 0.00 2.64 0.00 2.73
2769 11328 6.920758 CCACTAGTCTATCTTGCAATGTACTC 59.079 42.308 0.00 0.00 0.00 2.59
2770 11329 6.920758 CACTAGTCTATCTTGCAATGTACTCC 59.079 42.308 0.00 0.00 0.00 3.85
2771 11330 5.283457 AGTCTATCTTGCAATGTACTCCC 57.717 43.478 0.00 0.00 0.00 4.30
2774 11333 3.567478 ATCTTGCAATGTACTCCCTCC 57.433 47.619 0.00 0.00 0.00 4.30
2778 11337 1.066430 TGCAATGTACTCCCTCCGTTC 60.066 52.381 0.00 0.00 0.00 3.95
2783 11342 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2785 11344 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2786 11345 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2787 11346 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
2789 11348 6.667558 ACTCCCTCCGTTCCTAAATATTAG 57.332 41.667 0.00 0.00 0.00 1.73
2791 11350 6.267242 ACTCCCTCCGTTCCTAAATATTAGTC 59.733 42.308 0.00 0.00 0.00 2.59
2793 11352 6.842807 TCCCTCCGTTCCTAAATATTAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3338 11983 2.045561 TCCTTTGCGTCCAAGAAACA 57.954 45.000 0.00 0.00 31.52 2.83
3366 12011 0.543174 AGGACAGAAGGCGAAGGAGT 60.543 55.000 0.00 0.00 0.00 3.85
4739 13384 9.777382 GCGATAGTATGGCTAACCAAGCTTTTG 62.777 44.444 9.67 0.00 45.33 2.44
5773 14427 0.253894 TGAGATGGATGTGTGGCCAG 59.746 55.000 5.11 0.00 37.64 4.85
6210 14866 0.034670 ATGCTGGAGTTTCTGGCCTC 60.035 55.000 3.32 0.00 0.00 4.70
6219 14878 0.667993 TTTCTGGCCTCGTTTGCAAG 59.332 50.000 3.32 0.00 0.00 4.01
6230 14889 5.117135 GCCTCGTTTGCAAGAAATAACTTTC 59.883 40.000 0.00 0.00 40.95 2.62
6262 14921 2.474816 GATCTCAACCTCCGCACATAC 58.525 52.381 0.00 0.00 0.00 2.39
6287 14946 7.772292 ACAAATAGAGAGCTTCATAATGCTTGA 59.228 33.333 0.00 0.00 39.91 3.02
6298 14965 8.279103 GCTTCATAATGCTTGATAGTGACTAAC 58.721 37.037 0.00 0.00 0.00 2.34
6328 14995 5.012975 ACTTGAACATTTATGGGGCATTTGT 59.987 36.000 0.00 0.00 0.00 2.83
6389 15388 8.643324 ACCAGTATCTTCCACTGAAATATACTC 58.357 37.037 4.11 0.00 45.10 2.59
6408 15407 7.719871 ATACTCTTTTCTGCTAGTACCTTCA 57.280 36.000 0.00 0.00 0.00 3.02
6462 15461 7.297936 TCTTACACAAACATAGAGGTCTGAA 57.702 36.000 0.00 0.00 0.00 3.02
6501 15500 6.530019 ACATTTCATTATGTTTCAGGGGAC 57.470 37.500 0.00 0.00 35.24 4.46
6545 15555 1.545582 AGACAGAGCTGCACTTCTCTC 59.454 52.381 1.02 0.00 37.56 3.20
6569 15579 0.391130 TTGTACGGATGGTGCTCAGC 60.391 55.000 0.00 0.00 31.78 4.26
6850 15960 6.544038 TGTTCATGGTGATATATTTGCTCG 57.456 37.500 0.00 0.00 0.00 5.03
6878 15998 5.737860 TGTGTCTGAGTGAATGCATTCTAT 58.262 37.500 33.23 23.76 37.67 1.98
6891 16015 8.028354 TGAATGCATTCTATGGTGTACTTTTTG 58.972 33.333 33.23 0.00 37.67 2.44
6947 16091 4.087182 AGACTATTCGAAGGACCTTCACA 58.913 43.478 29.37 17.58 40.17 3.58
7009 16153 5.833406 TTGCATGTTCAGTTGAAGAAGAA 57.167 34.783 0.00 0.00 34.27 2.52
7167 16312 6.767902 TGAGGATTATCTACATGTCTTTTGGC 59.232 38.462 0.00 0.00 0.00 4.52
7185 16330 2.253603 GGCAGCGATTGTTGTTGATTC 58.746 47.619 0.00 0.00 0.00 2.52
7380 16547 2.819477 CACCAAGGAAGTGGCCAAA 58.181 52.632 7.24 0.00 43.00 3.28
7408 16575 8.059461 TCAGATGGTTACCTTCACTATAGAAGA 58.941 37.037 17.71 1.07 46.18 2.87
7567 16734 4.594920 TGGATAGAGGAAAGAATAGGCAGG 59.405 45.833 0.00 0.00 0.00 4.85
7651 16826 4.562143 GGCTGAAGTTTTTGATGGATTGCT 60.562 41.667 0.00 0.00 0.00 3.91
7665 16840 4.402829 TGGATTGCTAGTTTGCCAAGTTA 58.597 39.130 0.00 0.00 0.00 2.24
7666 16841 4.458989 TGGATTGCTAGTTTGCCAAGTTAG 59.541 41.667 0.00 0.00 0.00 2.34
7667 16842 4.459337 GGATTGCTAGTTTGCCAAGTTAGT 59.541 41.667 0.00 0.00 0.00 2.24
7669 16844 5.934935 TTGCTAGTTTGCCAAGTTAGTAC 57.065 39.130 0.00 0.00 0.00 2.73
7670 16845 5.223449 TGCTAGTTTGCCAAGTTAGTACT 57.777 39.130 0.00 0.00 35.68 2.73
7673 16848 5.121925 GCTAGTTTGCCAAGTTAGTACTTCC 59.878 44.000 0.00 0.00 42.67 3.46
7674 16849 5.306114 AGTTTGCCAAGTTAGTACTTCCT 57.694 39.130 0.00 0.00 42.67 3.36
7675 16850 5.306394 AGTTTGCCAAGTTAGTACTTCCTC 58.694 41.667 0.00 0.00 42.67 3.71
7676 16851 3.975168 TGCCAAGTTAGTACTTCCTCC 57.025 47.619 0.00 0.00 42.67 4.30
7677 16852 2.232941 TGCCAAGTTAGTACTTCCTCCG 59.767 50.000 0.00 0.00 42.67 4.63
7678 16853 2.233186 GCCAAGTTAGTACTTCCTCCGT 59.767 50.000 0.00 0.00 42.67 4.69
7679 16854 3.675502 GCCAAGTTAGTACTTCCTCCGTC 60.676 52.174 0.00 0.00 42.67 4.79
7680 16855 3.119209 CCAAGTTAGTACTTCCTCCGTCC 60.119 52.174 0.00 0.00 42.67 4.79
7681 16856 2.732763 AGTTAGTACTTCCTCCGTCCC 58.267 52.381 0.00 0.00 0.00 4.46
7682 16857 2.042162 AGTTAGTACTTCCTCCGTCCCA 59.958 50.000 0.00 0.00 0.00 4.37
7683 16858 2.827921 GTTAGTACTTCCTCCGTCCCAA 59.172 50.000 0.00 0.00 0.00 4.12
7684 16859 2.019807 AGTACTTCCTCCGTCCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
7685 16860 2.332117 AGTACTTCCTCCGTCCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
7686 16861 2.910977 AGTACTTCCTCCGTCCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
7687 16862 4.098894 AGTACTTCCTCCGTCCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
7688 16863 4.533311 AGTACTTCCTCCGTCCCAAAATAA 59.467 41.667 0.00 0.00 0.00 1.40
7689 16864 3.951663 ACTTCCTCCGTCCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
7690 16865 3.329814 ACTTCCTCCGTCCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
7691 16866 3.343941 TCCTCCGTCCCAAAATAAGTG 57.656 47.619 0.00 0.00 0.00 3.16
7692 16867 2.640826 TCCTCCGTCCCAAAATAAGTGT 59.359 45.455 0.00 0.00 0.00 3.55
7693 16868 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
7694 16869 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
7695 16870 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
7696 16871 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
7697 16872 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
7698 16873 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
7699 16874 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
7700 16875 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
7701 16876 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
7702 16877 5.241506 TCCCAAAATAAGTGTCTTGAGCTTG 59.758 40.000 0.00 0.00 0.00 4.01
7703 16878 5.464168 CCAAAATAAGTGTCTTGAGCTTGG 58.536 41.667 0.00 0.00 0.00 3.61
7704 16879 5.010012 CCAAAATAAGTGTCTTGAGCTTGGT 59.990 40.000 0.00 0.00 0.00 3.67
7705 16880 6.206634 CCAAAATAAGTGTCTTGAGCTTGGTA 59.793 38.462 0.00 0.00 0.00 3.25
7706 16881 6.803154 AAATAAGTGTCTTGAGCTTGGTAC 57.197 37.500 0.00 0.00 0.00 3.34
7707 16882 3.838244 AAGTGTCTTGAGCTTGGTACA 57.162 42.857 0.00 0.00 0.00 2.90
7723 16898 4.651778 TGGTACAAATTTGCACTAGAGCT 58.348 39.130 18.12 0.00 31.92 4.09
7724 16899 5.800296 TGGTACAAATTTGCACTAGAGCTA 58.200 37.500 18.12 2.80 31.92 3.32
7725 16900 5.874810 TGGTACAAATTTGCACTAGAGCTAG 59.125 40.000 18.12 3.06 35.51 3.42
7726 16901 5.875359 GGTACAAATTTGCACTAGAGCTAGT 59.125 40.000 18.12 4.38 46.52 2.57
7727 16902 7.039882 GGTACAAATTTGCACTAGAGCTAGTA 58.960 38.462 18.12 2.25 43.98 1.82
7728 16903 6.969828 ACAAATTTGCACTAGAGCTAGTAC 57.030 37.500 18.12 5.52 43.98 2.73
7729 16904 6.464222 ACAAATTTGCACTAGAGCTAGTACA 58.536 36.000 18.12 8.00 43.98 2.90
7730 16905 6.934645 ACAAATTTGCACTAGAGCTAGTACAA 59.065 34.615 18.12 15.78 43.71 2.41
7733 16908 5.723672 TTGCACTAGAGCTAGTACAAAGT 57.276 39.130 16.89 0.00 42.94 2.66
7734 16909 5.723672 TGCACTAGAGCTAGTACAAAGTT 57.276 39.130 13.47 0.00 43.98 2.66
7735 16910 6.829229 TGCACTAGAGCTAGTACAAAGTTA 57.171 37.500 13.47 0.00 43.98 2.24
7736 16911 7.223260 TGCACTAGAGCTAGTACAAAGTTAA 57.777 36.000 13.47 0.00 43.98 2.01
7737 16912 7.313646 TGCACTAGAGCTAGTACAAAGTTAAG 58.686 38.462 13.47 0.00 43.98 1.85
7738 16913 7.176165 TGCACTAGAGCTAGTACAAAGTTAAGA 59.824 37.037 13.47 0.00 43.98 2.10
7739 16914 7.485595 GCACTAGAGCTAGTACAAAGTTAAGAC 59.514 40.741 9.66 0.00 43.98 3.01
7740 16915 8.512956 CACTAGAGCTAGTACAAAGTTAAGACA 58.487 37.037 9.66 0.00 43.98 3.41
7741 16916 8.513774 ACTAGAGCTAGTACAAAGTTAAGACAC 58.486 37.037 8.35 0.00 43.98 3.67
7742 16917 7.527568 AGAGCTAGTACAAAGTTAAGACACT 57.472 36.000 0.00 0.00 0.00 3.55
7743 16918 7.953752 AGAGCTAGTACAAAGTTAAGACACTT 58.046 34.615 0.00 0.00 38.74 3.16
7744 16919 9.075678 AGAGCTAGTACAAAGTTAAGACACTTA 57.924 33.333 0.00 0.00 35.87 2.24
7745 16920 9.857957 GAGCTAGTACAAAGTTAAGACACTTAT 57.142 33.333 0.00 0.00 35.87 1.73
7751 16926 9.673454 GTACAAAGTTAAGACACTTATTTTGGG 57.327 33.333 19.96 8.06 35.87 4.12
7752 16927 8.528044 ACAAAGTTAAGACACTTATTTTGGGA 57.472 30.769 19.96 0.00 35.87 4.37
7753 16928 8.410912 ACAAAGTTAAGACACTTATTTTGGGAC 58.589 33.333 19.96 6.58 35.87 4.46
7754 16929 6.796705 AGTTAAGACACTTATTTTGGGACG 57.203 37.500 0.00 0.00 0.00 4.79
7755 16930 5.704053 AGTTAAGACACTTATTTTGGGACGG 59.296 40.000 0.00 0.00 0.00 4.79
7756 16931 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
7757 16932 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
7758 16933 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
7759 16934 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
7770 16945 2.391678 GGACGGAGGGAGTAATTGGTA 58.608 52.381 0.00 0.00 0.00 3.25
7772 16947 3.431346 GGACGGAGGGAGTAATTGGTAAC 60.431 52.174 0.00 0.00 0.00 2.50
7805 16980 8.820933 TCGTGCTATTATCAAGAAAAGAGATTG 58.179 33.333 0.00 0.00 0.00 2.67
7852 17034 1.063642 TGGACCAGACGATGAGGATCT 60.064 52.381 0.00 0.00 34.92 2.75
7911 17097 4.392138 GGTGATCAGCAACAGTAAACCTAC 59.608 45.833 19.79 0.00 33.18 3.18
8029 17215 7.374491 GCGAGATTTATCAGCTCAATTGTAAAC 59.626 37.037 5.13 0.00 32.52 2.01
8108 17294 9.817365 CTTATTTATGAATTATCCACTTGAGCG 57.183 33.333 0.00 0.00 0.00 5.03
8127 17313 7.477144 TGAGCGTTTTGTATGTAGGAATATG 57.523 36.000 0.00 0.00 0.00 1.78
8130 17318 7.916552 AGCGTTTTGTATGTAGGAATATGTTC 58.083 34.615 0.00 0.00 0.00 3.18
8164 17353 2.890808 TTCGCCTCATGTCTATGGAC 57.109 50.000 1.56 1.56 42.42 4.02
8181 17370 4.463050 TGGACCCTTGGTTGTTTCTTAT 57.537 40.909 0.00 0.00 35.25 1.73
8219 17411 9.303537 GTTTGTACTACTGAATTTAGCTAGGAG 57.696 37.037 0.00 0.00 0.00 3.69
8315 21165 5.151297 CCAAGCCATGGTTAATTTTGTCT 57.849 39.130 14.67 0.00 44.85 3.41
8316 21166 5.550290 CCAAGCCATGGTTAATTTTGTCTT 58.450 37.500 14.67 0.71 44.85 3.01
8345 21197 8.522003 TCAAAGCAAAATATTGACTTGCAGATA 58.478 29.630 20.11 5.66 46.26 1.98
8360 21212 8.962884 ACTTGCAGATAAATTTGGAAAACTTT 57.037 26.923 0.00 0.00 0.00 2.66
8402 21292 9.180678 GCATGATATACCCATTTTCTTTTAACG 57.819 33.333 0.00 0.00 0.00 3.18
8486 21377 7.334171 TGCGTGATATATGCTAAATATGTTGCT 59.666 33.333 0.99 0.00 41.99 3.91
8564 21455 4.803426 CCACGAGCGGCTCCAGAC 62.803 72.222 23.36 0.00 0.00 3.51
8568 21459 2.496817 GAGCGGCTCCAGACGATT 59.503 61.111 19.20 0.00 46.34 3.34
8569 21460 1.734137 GAGCGGCTCCAGACGATTA 59.266 57.895 19.20 0.00 46.34 1.75
8570 21461 0.318275 GAGCGGCTCCAGACGATTAG 60.318 60.000 19.20 0.00 46.34 1.73
8571 21462 1.739338 AGCGGCTCCAGACGATTAGG 61.739 60.000 5.86 0.00 46.34 2.69
8573 21464 2.822215 GGCTCCAGACGATTAGGGA 58.178 57.895 0.00 0.00 0.00 4.20
8574 21465 0.389757 GGCTCCAGACGATTAGGGAC 59.610 60.000 0.00 0.00 0.00 4.46
8575 21466 0.030908 GCTCCAGACGATTAGGGACG 59.969 60.000 0.00 0.00 0.00 4.79
8576 21467 0.030908 CTCCAGACGATTAGGGACGC 59.969 60.000 0.00 0.00 0.00 5.19
8577 21468 1.067582 CCAGACGATTAGGGACGCC 59.932 63.158 0.00 0.00 0.00 5.68
8578 21469 1.672854 CCAGACGATTAGGGACGCCA 61.673 60.000 0.00 0.00 0.00 5.69
8579 21470 0.389391 CAGACGATTAGGGACGCCAT 59.611 55.000 0.00 0.00 0.00 4.40
8580 21471 1.611977 CAGACGATTAGGGACGCCATA 59.388 52.381 0.00 0.00 0.00 2.74
8581 21472 2.231478 CAGACGATTAGGGACGCCATAT 59.769 50.000 0.00 0.00 0.00 1.78
8582 21473 2.492484 AGACGATTAGGGACGCCATATC 59.508 50.000 0.00 0.00 0.00 1.63
8583 21474 1.201647 ACGATTAGGGACGCCATATCG 59.798 52.381 16.67 16.67 32.10 2.92
8584 21475 1.641577 GATTAGGGACGCCATATCGC 58.358 55.000 0.00 0.00 0.00 4.58
8585 21476 0.973632 ATTAGGGACGCCATATCGCA 59.026 50.000 0.00 0.00 0.00 5.10
8586 21477 0.973632 TTAGGGACGCCATATCGCAT 59.026 50.000 0.00 0.00 0.00 4.73
8587 21478 0.973632 TAGGGACGCCATATCGCATT 59.026 50.000 0.00 0.00 0.00 3.56
8588 21479 0.973632 AGGGACGCCATATCGCATTA 59.026 50.000 0.00 0.00 0.00 1.90
8589 21480 1.555075 AGGGACGCCATATCGCATTAT 59.445 47.619 0.00 0.00 0.00 1.28
8590 21481 2.764010 AGGGACGCCATATCGCATTATA 59.236 45.455 0.00 0.00 0.00 0.98
8591 21482 3.196901 AGGGACGCCATATCGCATTATAA 59.803 43.478 0.00 0.00 0.00 0.98
8592 21483 3.936453 GGGACGCCATATCGCATTATAAA 59.064 43.478 0.00 0.00 0.00 1.40
8593 21484 4.393680 GGGACGCCATATCGCATTATAAAA 59.606 41.667 0.00 0.00 0.00 1.52
8594 21485 5.065988 GGGACGCCATATCGCATTATAAAAT 59.934 40.000 0.00 0.00 0.00 1.82
8595 21486 5.965334 GGACGCCATATCGCATTATAAAATG 59.035 40.000 0.00 0.00 44.53 2.32
8596 21487 6.403200 GGACGCCATATCGCATTATAAAATGT 60.403 38.462 0.00 0.00 43.75 2.71
8597 21488 6.908825 ACGCCATATCGCATTATAAAATGTT 58.091 32.000 0.00 0.00 43.75 2.71
8598 21489 7.367285 ACGCCATATCGCATTATAAAATGTTT 58.633 30.769 0.00 0.00 43.75 2.83
8599 21490 7.537306 ACGCCATATCGCATTATAAAATGTTTC 59.463 33.333 0.00 0.00 43.75 2.78
8600 21491 7.536964 CGCCATATCGCATTATAAAATGTTTCA 59.463 33.333 0.00 0.00 43.75 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.717294 ACATCACCGGGTGCCTCC 61.717 66.667 22.42 0.00 32.98 4.30
14 15 2.351924 AAACACATCACCGGGTGCCT 62.352 55.000 22.42 9.17 38.57 4.75
22 23 1.725625 CGCACGCAAACACATCACC 60.726 57.895 0.00 0.00 0.00 4.02
27 28 1.923227 TTTGTCCGCACGCAAACACA 61.923 50.000 0.00 0.00 30.68 3.72
28 29 1.199852 CTTTGTCCGCACGCAAACAC 61.200 55.000 0.00 0.00 32.11 3.32
33 34 3.947841 GCACTTTGTCCGCACGCA 61.948 61.111 0.00 0.00 0.00 5.24
35 36 0.179225 GTATGCACTTTGTCCGCACG 60.179 55.000 0.00 0.00 38.73 5.34
77 4715 9.116067 CGGTAGTATTAAATTTTCCTTCATGGA 57.884 33.333 0.00 0.00 44.51 3.41
101 4739 3.223953 CGATGACTAGTATACGTTGCGG 58.776 50.000 0.00 0.00 0.00 5.69
103 4741 3.624900 TGCGATGACTAGTATACGTTGC 58.375 45.455 0.00 1.37 0.00 4.17
105 4743 7.094506 TGGATATTGCGATGACTAGTATACGTT 60.095 37.037 0.00 0.00 0.00 3.99
113 4751 7.425577 TTTCAATGGATATTGCGATGACTAG 57.574 36.000 0.00 0.00 42.71 2.57
114 4752 7.984422 ATTTCAATGGATATTGCGATGACTA 57.016 32.000 0.00 0.00 42.71 2.59
121 4759 8.277713 GGATTTCAAATTTCAATGGATATTGCG 58.722 33.333 0.00 0.00 42.71 4.85
122 4760 9.111613 TGGATTTCAAATTTCAATGGATATTGC 57.888 29.630 0.00 0.00 42.71 3.56
164 4802 2.822561 TGCGCCTAAATCATTTGTTGGA 59.177 40.909 4.18 0.00 0.00 3.53
200 4838 5.913137 AGATGAAAGTTCACAAAACCACA 57.087 34.783 0.00 0.00 40.49 4.17
260 4927 9.250624 CTGCTAGGATGTATAGTAACTCAAAAC 57.749 37.037 0.00 0.00 0.00 2.43
321 4988 6.016693 TCCGACTTCTTTGCAATAAACATGAA 60.017 34.615 0.00 0.00 0.00 2.57
322 4989 5.471797 TCCGACTTCTTTGCAATAAACATGA 59.528 36.000 0.00 0.00 0.00 3.07
333 5000 5.048991 TCCAAATTAGTTCCGACTTCTTTGC 60.049 40.000 0.00 0.00 36.15 3.68
341 5012 5.175859 TCATCACTCCAAATTAGTTCCGAC 58.824 41.667 0.00 0.00 0.00 4.79
378 5049 3.570559 GCTACATCGAATCTACTGAGCC 58.429 50.000 0.00 0.00 0.00 4.70
383 5054 4.465886 ACTGAGGCTACATCGAATCTACT 58.534 43.478 0.00 0.00 0.00 2.57
389 5060 1.681793 GGCTACTGAGGCTACATCGAA 59.318 52.381 0.00 0.00 44.83 3.71
452 5123 4.648626 GCAGTGTGGGAGCTGGCA 62.649 66.667 0.00 0.00 33.62 4.92
457 5128 4.052518 ATGGGGCAGTGTGGGAGC 62.053 66.667 0.00 0.00 0.00 4.70
543 5216 0.544357 TATATGAGGTCCCCGCCCTG 60.544 60.000 0.00 0.00 30.60 4.45
655 5351 6.049149 CCTTGAGATAACATACCGACAACAT 58.951 40.000 0.00 0.00 0.00 2.71
685 5381 1.176619 ACCAGTAAAAGCCAACCGCC 61.177 55.000 0.00 0.00 38.78 6.13
898 6693 3.694072 TGTTAATGTTAGATGGGCTGCAC 59.306 43.478 0.50 0.00 0.00 4.57
991 6789 2.111878 GTCATCCATGGGAGCGGG 59.888 66.667 13.02 0.00 34.05 6.13
1059 6872 2.952783 CCGCATTCGCATTGCAGC 60.953 61.111 9.69 5.94 40.14 5.25
1241 7075 1.163801 TAAGGGGTTGGGTAGGGCA 59.836 57.895 0.00 0.00 0.00 5.36
1477 7341 2.360852 CACCTTGGAGGCAGCCAG 60.361 66.667 15.80 1.20 39.63 4.85
1562 7426 1.449070 CTGGCAGAGCGCTTCATCA 60.449 57.895 13.26 7.82 41.91 3.07
1563 7427 1.449246 ACTGGCAGAGCGCTTCATC 60.449 57.895 23.66 0.00 41.91 2.92
1564 7428 1.744368 CACTGGCAGAGCGCTTCAT 60.744 57.895 23.66 0.00 41.91 2.57
1662 7532 2.736579 TTCTGCTCGCCTGCACACAT 62.737 55.000 0.00 0.00 38.12 3.21
1682 7556 1.070758 TCACACTTCACTCCTTGAGGC 59.929 52.381 0.00 0.00 34.60 4.70
1690 7564 0.798776 CGCCCATTCACACTTCACTC 59.201 55.000 0.00 0.00 0.00 3.51
1691 7565 0.606401 CCGCCCATTCACACTTCACT 60.606 55.000 0.00 0.00 0.00 3.41
1719 7597 3.028366 GCCTGTCTTTTCGAGGCGC 62.028 63.158 0.00 0.00 42.84 6.53
1799 7677 1.004044 CAGGCCAGGAAACAGACAGAT 59.996 52.381 5.01 0.00 0.00 2.90
2019 7897 3.440173 TGCAAGCCTATTCTTTGTGCTAC 59.560 43.478 0.00 0.00 0.00 3.58
2114 7992 4.379243 CGGCAAGCGTGAGGGAGT 62.379 66.667 2.99 0.00 0.00 3.85
2289 8174 5.582550 TCTTACATGACATAAGCGAGTGAG 58.417 41.667 0.00 0.00 30.95 3.51
2431 8319 0.827925 AAGCTCCTCACTGGTGTCGA 60.828 55.000 0.00 0.00 37.07 4.20
2434 8322 1.757306 CCAAGCTCCTCACTGGTGT 59.243 57.895 0.00 0.00 37.07 4.16
2448 8336 4.439700 CCATAGCAATTCTCTTGTGCCAAG 60.440 45.833 8.22 8.22 39.13 3.61
2492 8380 3.122297 ACCATGTGCAACGTCAATTTTG 58.878 40.909 0.00 0.00 42.39 2.44
2527 8417 6.956299 AAAATTGATGTAGATGCAAAGCAC 57.044 33.333 0.00 0.00 43.04 4.40
2553 8447 7.816640 ACCTGACATGAACATATTACAACAAC 58.183 34.615 0.00 0.00 0.00 3.32
2555 8449 7.394016 AGACCTGACATGAACATATTACAACA 58.606 34.615 0.00 0.00 0.00 3.33
2556 8450 7.549134 TGAGACCTGACATGAACATATTACAAC 59.451 37.037 0.00 0.00 0.00 3.32
2566 8461 4.067896 ACAACATGAGACCTGACATGAAC 58.932 43.478 12.90 0.00 44.28 3.18
2711 8709 9.322769 ACATAGGAGGGTATAACCTATTAACAG 57.677 37.037 10.03 0.00 42.74 3.16
2738 11297 5.389520 TGCAAGATAGACTAGTGGCTCTAT 58.610 41.667 0.00 0.26 33.24 1.98
2765 11324 7.300658 ACTAATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2766 11325 6.141790 ACTAATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2767 11326 6.494146 AGACTAATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2768 11327 6.379579 AGACTAATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2769 11328 6.667558 AGACTAATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2770 11329 8.959705 AAAAGACTAATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2806 11448 4.478206 TTGTTCCAACAATTCTTGCCAA 57.522 36.364 0.55 0.00 43.45 4.52
2842 11487 9.236006 GACAACATAGGCATTATTCTATCCATT 57.764 33.333 0.00 0.00 0.00 3.16
2843 11488 8.609483 AGACAACATAGGCATTATTCTATCCAT 58.391 33.333 0.00 0.00 0.00 3.41
2844 11489 7.977818 AGACAACATAGGCATTATTCTATCCA 58.022 34.615 0.00 0.00 0.00 3.41
2845 11490 8.097038 TGAGACAACATAGGCATTATTCTATCC 58.903 37.037 0.00 0.00 0.00 2.59
2846 11491 9.494271 TTGAGACAACATAGGCATTATTCTATC 57.506 33.333 0.00 0.00 0.00 2.08
2847 11492 9.277783 GTTGAGACAACATAGGCATTATTCTAT 57.722 33.333 9.32 0.00 0.00 1.98
2848 11493 8.264347 TGTTGAGACAACATAGGCATTATTCTA 58.736 33.333 12.32 0.00 31.49 2.10
2849 11494 7.112122 TGTTGAGACAACATAGGCATTATTCT 58.888 34.615 12.32 0.00 31.49 2.40
2850 11495 7.320443 TGTTGAGACAACATAGGCATTATTC 57.680 36.000 12.32 0.00 31.49 1.75
2851 11496 7.886629 ATGTTGAGACAACATAGGCATTATT 57.113 32.000 22.78 2.35 38.94 1.40
3338 11983 2.616510 CGCCTTCTGTCCTCTCCATTTT 60.617 50.000 0.00 0.00 0.00 1.82
3366 12011 1.209504 CTTGAAGCCGGTATCCTCCAA 59.790 52.381 1.90 0.00 0.00 3.53
4739 13384 3.057019 GTTTGCCCGAAAAATGAGGTTC 58.943 45.455 0.00 0.00 0.00 3.62
5773 14427 0.664224 GGACTCGATCCTTCCTCGTC 59.336 60.000 6.63 0.00 45.22 4.20
6185 14840 3.209410 CCAGAAACTCCAGCATACATCC 58.791 50.000 0.00 0.00 0.00 3.51
6210 14866 5.746245 TGTGGAAAGTTATTTCTTGCAAACG 59.254 36.000 0.00 0.00 43.67 3.60
6219 14878 7.227049 TCCTGGAAATGTGGAAAGTTATTTC 57.773 36.000 0.00 0.00 43.48 2.17
6230 14889 3.019564 GGTTGAGATCCTGGAAATGTGG 58.980 50.000 0.00 0.00 0.00 4.17
6262 14921 8.151141 TCAAGCATTATGAAGCTCTCTATTTG 57.849 34.615 0.00 0.00 40.90 2.32
6287 14946 7.497595 TGTTCAAGTCTTGTGTTAGTCACTAT 58.502 34.615 12.30 0.00 46.27 2.12
6298 14965 5.713025 CCCCATAAATGTTCAAGTCTTGTG 58.287 41.667 12.30 1.12 0.00 3.33
6301 14968 4.415596 TGCCCCATAAATGTTCAAGTCTT 58.584 39.130 0.00 0.00 0.00 3.01
6303 14970 5.343307 AATGCCCCATAAATGTTCAAGTC 57.657 39.130 0.00 0.00 0.00 3.01
6304 14971 5.012975 ACAAATGCCCCATAAATGTTCAAGT 59.987 36.000 0.00 0.00 0.00 3.16
6328 14995 3.712016 TTTCTGTAATGCTGCCTGGTA 57.288 42.857 0.00 0.00 0.00 3.25
6432 15431 8.379457 ACCTCTATGTTTGTGTAAGAAAGAAC 57.621 34.615 0.00 0.00 25.63 3.01
6496 15495 0.973632 GTTTGAAACATGGGGTCCCC 59.026 55.000 21.64 21.64 45.71 4.81
6515 15514 2.095364 GCAGCTCTGTCTTGGTTGAATG 60.095 50.000 0.00 0.00 0.00 2.67
6545 15555 2.673368 GAGCACCATCCGTACAAAAGAG 59.327 50.000 0.00 0.00 0.00 2.85
6569 15579 4.040461 TCTGTTCTCACTAAAGGGGAGTTG 59.960 45.833 0.00 0.00 0.00 3.16
6743 15768 8.561738 TTATTGTACTTCTAAGCTTTCCTTGG 57.438 34.615 3.20 0.00 34.95 3.61
6850 15960 3.503363 TGCATTCACTCAGACACAAATCC 59.497 43.478 0.00 0.00 0.00 3.01
6878 15998 4.425180 TGGTCTAGCAAAAAGTACACCA 57.575 40.909 0.00 0.00 0.00 4.17
6891 16015 5.358298 AAACTTCGTCAATTTGGTCTAGC 57.642 39.130 0.00 0.00 0.00 3.42
6924 16068 5.125097 GTGTGAAGGTCCTTCGAATAGTCTA 59.875 44.000 23.69 3.12 42.78 2.59
6947 16091 9.570468 AACATCTTTGCAATATCTGAGATATGT 57.430 29.630 15.21 5.90 0.00 2.29
7009 16153 8.189119 GATCCTGGAAGATCTCTATTAAGTGT 57.811 38.462 0.00 0.00 39.70 3.55
7134 16279 5.537300 TGTAGATAATCCTCAAGGTGCTC 57.463 43.478 0.00 0.00 36.34 4.26
7167 16312 3.454042 TCGAATCAACAACAATCGCTG 57.546 42.857 0.00 0.00 33.76 5.18
7185 16330 3.067106 AGTGCAACAGGTTTAGACATCG 58.933 45.455 0.00 0.00 41.43 3.84
7289 16450 5.766670 TCCCTGATGATGATAATGCAGAAAC 59.233 40.000 0.00 0.00 0.00 2.78
7299 16460 9.325248 TGATACTTTGTATCCCTGATGATGATA 57.675 33.333 13.18 0.00 0.00 2.15
7380 16547 8.783660 TCTATAGTGAAGGTAACCATCTGATT 57.216 34.615 0.00 0.00 37.17 2.57
7567 16734 0.604578 TTTGCAAGGCATCCAAGCTC 59.395 50.000 0.00 0.00 38.76 4.09
7613 16780 4.276926 ACTTCAGCCTGAAACATGTCTTTC 59.723 41.667 8.74 0.43 35.73 2.62
7651 16826 6.429521 AGGAAGTACTAACTTGGCAAACTA 57.570 37.500 0.00 0.00 46.09 2.24
7665 16840 2.019807 TTTGGGACGGAGGAAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
7666 16841 2.845363 TTTTGGGACGGAGGAAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
7667 16842 4.533311 ACTTATTTTGGGACGGAGGAAGTA 59.467 41.667 0.00 0.00 0.00 2.24
7669 16844 3.689649 CACTTATTTTGGGACGGAGGAAG 59.310 47.826 0.00 0.00 0.00 3.46
7670 16845 3.073356 ACACTTATTTTGGGACGGAGGAA 59.927 43.478 0.00 0.00 0.00 3.36
7673 16848 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
7674 16849 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
7675 16850 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
7676 16851 4.378459 GCTCAAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
7677 16852 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
7678 16853 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
7679 16854 5.464168 CAAGCTCAAGACACTTATTTTGGG 58.536 41.667 0.00 0.00 0.00 4.12
7680 16855 5.010012 ACCAAGCTCAAGACACTTATTTTGG 59.990 40.000 0.00 0.00 37.83 3.28
7681 16856 6.076981 ACCAAGCTCAAGACACTTATTTTG 57.923 37.500 0.00 0.00 0.00 2.44
7682 16857 6.770785 TGTACCAAGCTCAAGACACTTATTTT 59.229 34.615 0.00 0.00 0.00 1.82
7683 16858 6.296026 TGTACCAAGCTCAAGACACTTATTT 58.704 36.000 0.00 0.00 0.00 1.40
7684 16859 5.865085 TGTACCAAGCTCAAGACACTTATT 58.135 37.500 0.00 0.00 0.00 1.40
7685 16860 5.483685 TGTACCAAGCTCAAGACACTTAT 57.516 39.130 0.00 0.00 0.00 1.73
7686 16861 4.948341 TGTACCAAGCTCAAGACACTTA 57.052 40.909 0.00 0.00 0.00 2.24
7687 16862 3.838244 TGTACCAAGCTCAAGACACTT 57.162 42.857 0.00 0.00 0.00 3.16
7688 16863 3.838244 TTGTACCAAGCTCAAGACACT 57.162 42.857 0.00 0.00 0.00 3.55
7689 16864 5.438761 AATTTGTACCAAGCTCAAGACAC 57.561 39.130 0.00 0.00 0.00 3.67
7690 16865 5.735922 GCAAATTTGTACCAAGCTCAAGACA 60.736 40.000 19.03 0.00 0.00 3.41
7691 16866 4.681483 GCAAATTTGTACCAAGCTCAAGAC 59.319 41.667 19.03 0.00 0.00 3.01
7692 16867 4.340666 TGCAAATTTGTACCAAGCTCAAGA 59.659 37.500 19.03 0.00 0.00 3.02
7693 16868 4.445385 GTGCAAATTTGTACCAAGCTCAAG 59.555 41.667 24.05 0.00 37.75 3.02
7694 16869 4.099266 AGTGCAAATTTGTACCAAGCTCAA 59.901 37.500 28.73 0.00 43.58 3.02
7695 16870 3.636300 AGTGCAAATTTGTACCAAGCTCA 59.364 39.130 28.73 9.83 43.58 4.26
7696 16871 4.243007 AGTGCAAATTTGTACCAAGCTC 57.757 40.909 28.73 10.93 43.58 4.09
7697 16872 5.070001 TCTAGTGCAAATTTGTACCAAGCT 58.930 37.500 28.73 16.43 43.58 3.74
7698 16873 5.371115 TCTAGTGCAAATTTGTACCAAGC 57.629 39.130 28.73 10.88 43.58 4.01
7699 16874 5.182001 AGCTCTAGTGCAAATTTGTACCAAG 59.818 40.000 28.73 25.32 43.58 3.61
7700 16875 5.070001 AGCTCTAGTGCAAATTTGTACCAA 58.930 37.500 28.73 19.15 43.58 3.67
7701 16876 4.651778 AGCTCTAGTGCAAATTTGTACCA 58.348 39.130 28.73 18.65 43.58 3.25
7702 16877 5.875359 ACTAGCTCTAGTGCAAATTTGTACC 59.125 40.000 28.73 16.74 44.11 3.34
7703 16878 6.969828 ACTAGCTCTAGTGCAAATTTGTAC 57.030 37.500 26.26 26.26 44.11 2.90
7705 16880 6.969828 GTACTAGCTCTAGTGCAAATTTGT 57.030 37.500 19.03 7.59 45.25 2.83
7713 16888 7.485595 GTCTTAACTTTGTACTAGCTCTAGTGC 59.514 40.741 17.32 16.27 45.25 4.40
7714 16889 8.512956 TGTCTTAACTTTGTACTAGCTCTAGTG 58.487 37.037 17.32 5.17 45.25 2.74
7716 16891 8.732531 AGTGTCTTAACTTTGTACTAGCTCTAG 58.267 37.037 0.00 2.55 39.04 2.43
7717 16892 8.632906 AGTGTCTTAACTTTGTACTAGCTCTA 57.367 34.615 0.00 0.00 0.00 2.43
7718 16893 7.527568 AGTGTCTTAACTTTGTACTAGCTCT 57.472 36.000 0.00 0.00 0.00 4.09
7719 16894 9.857957 ATAAGTGTCTTAACTTTGTACTAGCTC 57.142 33.333 0.00 0.00 40.77 4.09
7725 16900 9.673454 CCCAAAATAAGTGTCTTAACTTTGTAC 57.327 33.333 16.72 0.00 40.77 2.90
7726 16901 9.629878 TCCCAAAATAAGTGTCTTAACTTTGTA 57.370 29.630 16.72 8.94 40.77 2.41
7727 16902 8.410912 GTCCCAAAATAAGTGTCTTAACTTTGT 58.589 33.333 16.72 0.00 40.77 2.83
7728 16903 7.589954 CGTCCCAAAATAAGTGTCTTAACTTTG 59.410 37.037 14.00 14.00 40.77 2.77
7729 16904 7.255346 CCGTCCCAAAATAAGTGTCTTAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
7730 16905 6.206048 CCGTCCCAAAATAAGTGTCTTAACTT 59.794 38.462 0.00 0.00 42.89 2.66
7731 16906 5.704053 CCGTCCCAAAATAAGTGTCTTAACT 59.296 40.000 0.00 0.00 0.00 2.24
7732 16907 5.702209 TCCGTCCCAAAATAAGTGTCTTAAC 59.298 40.000 0.00 0.00 0.00 2.01
7733 16908 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
7734 16909 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
7735 16910 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
7736 16911 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
7737 16912 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
7738 16913 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
7739 16914 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
7740 16915 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
7741 16916 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
7742 16917 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
7743 16918 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
7744 16919 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
7745 16920 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44
7746 16921 1.961133 ATTACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
7747 16922 1.557832 CAATTACTCCCTCCGTCCCAA 59.442 52.381 0.00 0.00 0.00 4.12
7748 16923 1.200519 CAATTACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
7749 16924 0.468648 CCAATTACTCCCTCCGTCCC 59.531 60.000 0.00 0.00 0.00 4.46
7750 16925 1.201424 ACCAATTACTCCCTCCGTCC 58.799 55.000 0.00 0.00 0.00 4.79
7751 16926 3.736126 CGTTACCAATTACTCCCTCCGTC 60.736 52.174 0.00 0.00 0.00 4.79
7752 16927 2.167075 CGTTACCAATTACTCCCTCCGT 59.833 50.000 0.00 0.00 0.00 4.69
7753 16928 2.428171 TCGTTACCAATTACTCCCTCCG 59.572 50.000 0.00 0.00 0.00 4.63
7754 16929 3.450096 ACTCGTTACCAATTACTCCCTCC 59.550 47.826 0.00 0.00 0.00 4.30
7755 16930 4.732672 ACTCGTTACCAATTACTCCCTC 57.267 45.455 0.00 0.00 0.00 4.30
7756 16931 6.460676 CGATAACTCGTTACCAATTACTCCCT 60.461 42.308 0.00 0.00 40.07 4.20
7757 16932 5.689068 CGATAACTCGTTACCAATTACTCCC 59.311 44.000 0.00 0.00 40.07 4.30
7758 16933 6.744550 CGATAACTCGTTACCAATTACTCC 57.255 41.667 0.00 0.00 40.07 3.85
7805 16980 5.168569 TCATGAGATCCGAACTACAAACAC 58.831 41.667 0.00 0.00 0.00 3.32
7852 17034 3.462483 TGCAAGAGAGTCCGTTGTTTA 57.538 42.857 4.46 0.00 0.00 2.01
7888 17072 3.412386 AGGTTTACTGTTGCTGATCACC 58.588 45.455 0.00 0.00 0.00 4.02
7897 17081 6.645415 CACAAGTAGAGGTAGGTTTACTGTTG 59.355 42.308 0.00 0.00 0.00 3.33
7911 17097 4.636206 GGGAATTGTTAGCACAAGTAGAGG 59.364 45.833 0.00 0.00 46.25 3.69
7984 17170 6.442112 TCTCGCAGATGATGACTATAACTTG 58.558 40.000 0.00 0.00 33.89 3.16
8029 17215 3.003394 TCATAGTGGCCTTGGTCATTG 57.997 47.619 3.32 0.00 0.00 2.82
8092 17278 5.705609 ACAAAACGCTCAAGTGGATAATT 57.294 34.783 0.00 0.00 0.00 1.40
8102 17288 7.551262 ACATATTCCTACATACAAAACGCTCAA 59.449 33.333 0.00 0.00 0.00 3.02
8104 17290 7.478520 ACATATTCCTACATACAAAACGCTC 57.521 36.000 0.00 0.00 0.00 5.03
8106 17292 7.916552 AGAACATATTCCTACATACAAAACGC 58.083 34.615 0.00 0.00 35.18 4.84
8127 17313 4.524749 GCGAAAAACTCTGGTACAAGAAC 58.475 43.478 0.62 0.00 38.70 3.01
8130 17318 3.139077 AGGCGAAAAACTCTGGTACAAG 58.861 45.455 0.00 0.00 38.70 3.16
8164 17353 7.891561 TCAATAACATAAGAAACAACCAAGGG 58.108 34.615 0.00 0.00 0.00 3.95
8277 21127 5.614308 TGGCTTGGAGATATGAATACACAG 58.386 41.667 0.00 0.00 0.00 3.66
8314 21164 9.962759 GCAAGTCAATATTTTGCTTTGAATAAG 57.037 29.630 13.65 0.00 42.84 1.73
8315 21165 9.486497 TGCAAGTCAATATTTTGCTTTGAATAA 57.514 25.926 19.10 0.38 45.53 1.40
8316 21166 9.142515 CTGCAAGTCAATATTTTGCTTTGAATA 57.857 29.630 19.10 2.58 45.53 1.75
8333 21183 7.725251 AGTTTTCCAAATTTATCTGCAAGTCA 58.275 30.769 0.00 0.00 33.76 3.41
8360 21212 1.551430 CATGCAAAGAATGGCCTTGGA 59.449 47.619 3.32 0.40 0.00 3.53
8460 21351 7.334171 AGCAACATATTTAGCATATATCACGCA 59.666 33.333 0.00 0.00 0.00 5.24
8463 21354 9.166173 TGGAGCAACATATTTAGCATATATCAC 57.834 33.333 0.00 0.00 0.00 3.06
8486 21377 3.269118 TCCCTTGTGGATTCAATGATGGA 59.731 43.478 0.00 0.00 38.61 3.41
8514 21405 7.010091 GGAAAACGACTTTTCATGTGTTTCATT 59.990 33.333 11.85 0.00 44.99 2.57
8554 21445 1.107538 TCCCTAATCGTCTGGAGCCG 61.108 60.000 0.00 0.00 0.00 5.52
8563 21454 1.201647 CGATATGGCGTCCCTAATCGT 59.798 52.381 12.21 0.00 39.49 3.73
8564 21455 1.909376 CGATATGGCGTCCCTAATCG 58.091 55.000 0.00 0.00 38.84 3.34
8565 21456 1.067142 TGCGATATGGCGTCCCTAATC 60.067 52.381 5.18 0.00 35.06 1.75
8566 21457 0.973632 TGCGATATGGCGTCCCTAAT 59.026 50.000 5.18 0.00 35.06 1.73
8567 21458 0.973632 ATGCGATATGGCGTCCCTAA 59.026 50.000 5.18 0.00 35.06 2.69
8568 21459 0.973632 AATGCGATATGGCGTCCCTA 59.026 50.000 4.79 0.00 35.06 3.53
8569 21460 0.973632 TAATGCGATATGGCGTCCCT 59.026 50.000 4.79 0.00 35.06 4.20
8570 21461 2.024176 ATAATGCGATATGGCGTCCC 57.976 50.000 4.79 0.00 35.06 4.46
8571 21462 5.539582 TTTTATAATGCGATATGGCGTCC 57.460 39.130 4.79 0.00 35.06 4.79
8572 21463 6.542852 ACATTTTATAATGCGATATGGCGTC 58.457 36.000 4.79 0.00 44.05 5.19
8573 21464 6.494893 ACATTTTATAATGCGATATGGCGT 57.505 33.333 5.18 1.55 44.05 5.68
8574 21465 7.536964 TGAAACATTTTATAATGCGATATGGCG 59.463 33.333 5.18 0.00 44.05 5.69
8575 21466 8.741101 TGAAACATTTTATAATGCGATATGGC 57.259 30.769 2.25 2.25 44.05 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.