Multiple sequence alignment - TraesCS2B01G082400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G082400 chr2B 100.000 4339 0 0 1 4339 45737914 45733576 0.000000e+00 8013.0
1 TraesCS2B01G082400 chr2D 90.887 4126 215 78 218 4249 28550019 28554077 0.000000e+00 5387.0
2 TraesCS2B01G082400 chr2D 94.444 90 5 0 4250 4339 114218303 114218214 5.850000e-29 139.0
3 TraesCS2B01G082400 chr2D 94.382 89 5 0 4251 4339 362930806 362930894 2.100000e-28 137.0
4 TraesCS2B01G082400 chr2A 89.619 4229 227 105 136 4254 30332750 30328624 0.000000e+00 5182.0
5 TraesCS2B01G082400 chr6A 90.152 132 11 2 1001 1131 578887719 578887589 2.070000e-38 171.0
6 TraesCS2B01G082400 chr6A 88.542 96 11 0 2545 2640 578886313 578886218 2.740000e-22 117.0
7 TraesCS2B01G082400 chr6D 89.394 132 12 2 1001 1131 432710580 432710450 9.650000e-37 165.0
8 TraesCS2B01G082400 chr6D 93.407 91 6 0 4249 4339 21051967 21052057 7.570000e-28 135.0
9 TraesCS2B01G082400 chr6D 92.553 94 6 1 4246 4339 431160661 431160753 2.720000e-27 134.0
10 TraesCS2B01G082400 chr6D 88.542 96 11 0 2545 2640 432709200 432709105 2.740000e-22 117.0
11 TraesCS2B01G082400 chr6B 88.636 132 13 2 1001 1131 652631344 652631214 4.490000e-35 159.0
12 TraesCS2B01G082400 chr6B 92.553 94 7 0 4246 4339 561700723 561700630 7.570000e-28 135.0
13 TraesCS2B01G082400 chr6B 89.583 96 10 0 2545 2640 652629940 652629845 5.890000e-24 122.0
14 TraesCS2B01G082400 chr5B 96.552 87 3 0 4253 4339 502024307 502024221 1.260000e-30 145.0
15 TraesCS2B01G082400 chr5B 83.871 93 15 0 2548 2640 585835421 585835329 5.980000e-14 89.8
16 TraesCS2B01G082400 chr1D 94.505 91 5 0 4249 4339 415400078 415400168 1.630000e-29 141.0
17 TraesCS2B01G082400 chr1D 92.553 94 7 0 4246 4339 459052586 459052493 7.570000e-28 135.0
18 TraesCS2B01G082400 chr4D 93.478 92 6 0 4248 4339 64390637 64390546 2.100000e-28 137.0
19 TraesCS2B01G082400 chr5D 83.871 93 15 0 2548 2640 478222391 478222299 5.980000e-14 89.8
20 TraesCS2B01G082400 chr5A 83.871 93 15 0 2548 2640 597329470 597329378 5.980000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G082400 chr2B 45733576 45737914 4338 True 8013 8013 100.000 1 4339 1 chr2B.!!$R1 4338
1 TraesCS2B01G082400 chr2D 28550019 28554077 4058 False 5387 5387 90.887 218 4249 1 chr2D.!!$F1 4031
2 TraesCS2B01G082400 chr2A 30328624 30332750 4126 True 5182 5182 89.619 136 4254 1 chr2A.!!$R1 4118

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 74 0.843309 ACCATACCCAATGATGCCGA 59.157 50.0 0.00 0.0 37.86 5.54 F
1142 1175 0.602638 CCGCAGAAAGCAGGTGTGTA 60.603 55.0 0.00 0.0 46.13 2.90 F
1603 1647 0.315251 GCTTGAGGAACCAAACAGGC 59.685 55.0 0.00 0.0 43.14 4.85 F
2503 2591 0.392193 ACCTAGCACAGCTCATGCAC 60.392 55.0 19.16 0.0 45.92 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1146 1179 0.532573 CTACAAGGCAGGAAGCTCGA 59.467 55.000 0.00 0.0 44.79 4.04 R
2503 2591 0.097674 GAGTAATGCTTGTGGCTGCG 59.902 55.000 0.00 0.0 42.39 5.18 R
2544 2667 0.179111 GCGATGATCGACCACCTGAA 60.179 55.000 20.25 0.0 43.74 3.02 R
4102 4270 1.612950 TGGCTACAAGACGAACGGTAA 59.387 47.619 0.00 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.965902 AGATTTCCATACAACTTGTAAGAAGAT 57.034 29.630 5.73 8.24 36.31 2.40
27 28 9.994432 GATTTCCATACAACTTGTAAGAAGATG 57.006 33.333 5.73 0.30 36.31 2.90
28 29 8.918202 TTTCCATACAACTTGTAAGAAGATGT 57.082 30.769 5.73 5.10 36.31 3.06
29 30 8.547967 TTCCATACAACTTGTAAGAAGATGTC 57.452 34.615 5.73 0.00 36.31 3.06
30 31 7.103641 TCCATACAACTTGTAAGAAGATGTCC 58.896 38.462 5.73 0.00 36.31 4.02
31 32 6.878923 CCATACAACTTGTAAGAAGATGTCCA 59.121 38.462 5.73 0.00 36.31 4.02
32 33 7.390440 CCATACAACTTGTAAGAAGATGTCCAA 59.610 37.037 5.73 0.00 36.31 3.53
33 34 6.619801 ACAACTTGTAAGAAGATGTCCAAC 57.380 37.500 0.00 0.00 0.00 3.77
34 35 5.236478 ACAACTTGTAAGAAGATGTCCAACG 59.764 40.000 0.00 0.00 0.00 4.10
35 36 4.315803 ACTTGTAAGAAGATGTCCAACGG 58.684 43.478 0.00 0.00 0.00 4.44
36 37 4.039973 ACTTGTAAGAAGATGTCCAACGGA 59.960 41.667 0.00 0.00 0.00 4.69
37 38 4.610605 TGTAAGAAGATGTCCAACGGAA 57.389 40.909 0.00 0.00 31.38 4.30
38 39 4.566004 TGTAAGAAGATGTCCAACGGAAG 58.434 43.478 0.00 0.00 31.38 3.46
39 40 4.282449 TGTAAGAAGATGTCCAACGGAAGA 59.718 41.667 0.00 0.00 31.38 2.87
40 41 3.601443 AGAAGATGTCCAACGGAAGAG 57.399 47.619 0.00 0.00 31.38 2.85
41 42 3.165875 AGAAGATGTCCAACGGAAGAGA 58.834 45.455 0.00 0.00 31.38 3.10
42 43 3.194542 AGAAGATGTCCAACGGAAGAGAG 59.805 47.826 0.00 0.00 31.38 3.20
43 44 2.808919 AGATGTCCAACGGAAGAGAGA 58.191 47.619 0.00 0.00 31.38 3.10
44 45 2.494073 AGATGTCCAACGGAAGAGAGAC 59.506 50.000 0.00 0.00 31.38 3.36
45 46 1.996798 TGTCCAACGGAAGAGAGACT 58.003 50.000 0.00 0.00 31.38 3.24
46 47 3.150458 TGTCCAACGGAAGAGAGACTA 57.850 47.619 0.00 0.00 31.38 2.59
47 48 2.818432 TGTCCAACGGAAGAGAGACTAC 59.182 50.000 0.00 0.00 31.38 2.73
48 49 2.818432 GTCCAACGGAAGAGAGACTACA 59.182 50.000 0.00 0.00 31.38 2.74
49 50 3.444388 GTCCAACGGAAGAGAGACTACAT 59.556 47.826 0.00 0.00 31.38 2.29
50 51 3.695060 TCCAACGGAAGAGAGACTACATC 59.305 47.826 0.00 0.00 0.00 3.06
51 52 3.181485 CCAACGGAAGAGAGACTACATCC 60.181 52.174 0.00 0.00 0.00 3.51
52 53 3.655615 ACGGAAGAGAGACTACATCCT 57.344 47.619 0.00 0.00 0.00 3.24
53 54 4.774660 ACGGAAGAGAGACTACATCCTA 57.225 45.455 0.00 0.00 0.00 2.94
54 55 5.113446 ACGGAAGAGAGACTACATCCTAA 57.887 43.478 0.00 0.00 0.00 2.69
55 56 4.883006 ACGGAAGAGAGACTACATCCTAAC 59.117 45.833 0.00 0.00 0.00 2.34
56 57 4.276431 CGGAAGAGAGACTACATCCTAACC 59.724 50.000 0.00 0.00 0.00 2.85
57 58 5.202004 GGAAGAGAGACTACATCCTAACCA 58.798 45.833 0.00 0.00 0.00 3.67
58 59 5.836358 GGAAGAGAGACTACATCCTAACCAT 59.164 44.000 0.00 0.00 0.00 3.55
59 60 7.005296 GGAAGAGAGACTACATCCTAACCATA 58.995 42.308 0.00 0.00 0.00 2.74
60 61 7.040271 GGAAGAGAGACTACATCCTAACCATAC 60.040 44.444 0.00 0.00 0.00 2.39
61 62 6.308566 AGAGAGACTACATCCTAACCATACC 58.691 44.000 0.00 0.00 0.00 2.73
62 63 5.395611 AGAGACTACATCCTAACCATACCC 58.604 45.833 0.00 0.00 0.00 3.69
63 64 5.103215 AGAGACTACATCCTAACCATACCCA 60.103 44.000 0.00 0.00 0.00 4.51
64 65 5.535029 AGACTACATCCTAACCATACCCAA 58.465 41.667 0.00 0.00 0.00 4.12
65 66 6.151049 AGACTACATCCTAACCATACCCAAT 58.849 40.000 0.00 0.00 0.00 3.16
66 67 6.043243 AGACTACATCCTAACCATACCCAATG 59.957 42.308 0.00 0.00 35.15 2.82
67 68 5.908831 ACTACATCCTAACCATACCCAATGA 59.091 40.000 0.00 0.00 37.86 2.57
68 69 5.930209 ACATCCTAACCATACCCAATGAT 57.070 39.130 0.00 0.00 37.86 2.45
69 70 5.634118 ACATCCTAACCATACCCAATGATG 58.366 41.667 0.00 0.00 37.86 3.07
70 71 4.098914 TCCTAACCATACCCAATGATGC 57.901 45.455 0.00 0.00 37.86 3.91
71 72 3.157087 CCTAACCATACCCAATGATGCC 58.843 50.000 0.00 0.00 37.86 4.40
72 73 1.691196 AACCATACCCAATGATGCCG 58.309 50.000 0.00 0.00 37.86 5.69
73 74 0.843309 ACCATACCCAATGATGCCGA 59.157 50.000 0.00 0.00 37.86 5.54
74 75 1.425066 ACCATACCCAATGATGCCGAT 59.575 47.619 0.00 0.00 37.86 4.18
75 76 2.158475 ACCATACCCAATGATGCCGATT 60.158 45.455 0.00 0.00 37.86 3.34
76 77 2.892852 CCATACCCAATGATGCCGATTT 59.107 45.455 0.00 0.00 37.86 2.17
77 78 3.305539 CCATACCCAATGATGCCGATTTG 60.306 47.826 0.00 0.00 37.86 2.32
78 79 2.142356 ACCCAATGATGCCGATTTGA 57.858 45.000 0.00 0.00 0.00 2.69
79 80 2.669781 ACCCAATGATGCCGATTTGAT 58.330 42.857 0.00 0.00 0.00 2.57
80 81 3.033184 ACCCAATGATGCCGATTTGATT 58.967 40.909 0.00 0.00 0.00 2.57
81 82 3.181473 ACCCAATGATGCCGATTTGATTG 60.181 43.478 0.00 0.00 0.00 2.67
82 83 3.386486 CCAATGATGCCGATTTGATTGG 58.614 45.455 0.00 0.00 35.29 3.16
83 84 3.068448 CCAATGATGCCGATTTGATTGGA 59.932 43.478 0.00 0.00 41.55 3.53
84 85 4.262292 CCAATGATGCCGATTTGATTGGAT 60.262 41.667 0.00 0.00 41.55 3.41
85 86 5.294356 CAATGATGCCGATTTGATTGGATT 58.706 37.500 0.00 0.00 35.72 3.01
86 87 4.310357 TGATGCCGATTTGATTGGATTG 57.690 40.909 0.00 0.00 35.72 2.67
87 88 3.700539 TGATGCCGATTTGATTGGATTGT 59.299 39.130 0.00 0.00 35.72 2.71
88 89 4.160065 TGATGCCGATTTGATTGGATTGTT 59.840 37.500 0.00 0.00 35.72 2.83
89 90 4.533919 TGCCGATTTGATTGGATTGTTT 57.466 36.364 0.00 0.00 35.72 2.83
90 91 4.493547 TGCCGATTTGATTGGATTGTTTC 58.506 39.130 0.00 0.00 35.72 2.78
91 92 4.220382 TGCCGATTTGATTGGATTGTTTCT 59.780 37.500 0.00 0.00 35.72 2.52
92 93 5.417266 TGCCGATTTGATTGGATTGTTTCTA 59.583 36.000 0.00 0.00 35.72 2.10
93 94 5.973565 GCCGATTTGATTGGATTGTTTCTAG 59.026 40.000 0.00 0.00 35.72 2.43
94 95 6.183360 GCCGATTTGATTGGATTGTTTCTAGA 60.183 38.462 0.00 0.00 35.72 2.43
95 96 7.469181 GCCGATTTGATTGGATTGTTTCTAGAT 60.469 37.037 0.00 0.00 35.72 1.98
96 97 7.859377 CCGATTTGATTGGATTGTTTCTAGATG 59.141 37.037 0.00 0.00 35.72 2.90
97 98 8.615211 CGATTTGATTGGATTGTTTCTAGATGA 58.385 33.333 0.00 0.00 0.00 2.92
101 102 9.904198 TTGATTGGATTGTTTCTAGATGATACA 57.096 29.630 0.00 0.00 35.40 2.29
104 105 7.734924 TGGATTGTTTCTAGATGATACATGC 57.265 36.000 0.00 0.00 36.71 4.06
105 106 7.512130 TGGATTGTTTCTAGATGATACATGCT 58.488 34.615 0.00 0.00 36.71 3.79
106 107 8.650490 TGGATTGTTTCTAGATGATACATGCTA 58.350 33.333 0.00 0.00 36.71 3.49
107 108 8.930760 GGATTGTTTCTAGATGATACATGCTAC 58.069 37.037 0.00 0.00 36.71 3.58
108 109 9.481340 GATTGTTTCTAGATGATACATGCTACA 57.519 33.333 0.00 0.00 36.71 2.74
109 110 9.836864 ATTGTTTCTAGATGATACATGCTACAA 57.163 29.630 0.00 0.00 36.71 2.41
110 111 9.665719 TTGTTTCTAGATGATACATGCTACAAA 57.334 29.630 0.00 0.00 36.71 2.83
111 112 9.836864 TGTTTCTAGATGATACATGCTACAAAT 57.163 29.630 0.00 0.00 32.96 2.32
122 123 9.946165 GATACATGCTACAAATTTAGTTAACCC 57.054 33.333 0.88 0.00 0.00 4.11
123 124 6.848451 ACATGCTACAAATTTAGTTAACCCG 58.152 36.000 0.88 0.00 0.00 5.28
124 125 6.655848 ACATGCTACAAATTTAGTTAACCCGA 59.344 34.615 0.88 0.00 0.00 5.14
125 126 7.175293 ACATGCTACAAATTTAGTTAACCCGAA 59.825 33.333 0.88 0.00 0.00 4.30
126 127 6.901265 TGCTACAAATTTAGTTAACCCGAAC 58.099 36.000 0.88 0.00 0.00 3.95
127 128 6.017325 GCTACAAATTTAGTTAACCCGAACG 58.983 40.000 0.88 0.00 34.36 3.95
128 129 6.128580 GCTACAAATTTAGTTAACCCGAACGA 60.129 38.462 0.88 0.00 34.36 3.85
129 130 6.616774 ACAAATTTAGTTAACCCGAACGAA 57.383 33.333 0.88 0.00 34.36 3.85
130 131 6.429624 ACAAATTTAGTTAACCCGAACGAAC 58.570 36.000 0.88 0.00 34.36 3.95
131 132 4.908966 ATTTAGTTAACCCGAACGAACG 57.091 40.909 0.88 0.00 34.36 3.95
132 133 3.634568 TTAGTTAACCCGAACGAACGA 57.365 42.857 0.88 0.00 34.36 3.85
133 134 2.730550 AGTTAACCCGAACGAACGAT 57.269 45.000 0.88 0.00 34.36 3.73
134 135 2.331194 AGTTAACCCGAACGAACGATG 58.669 47.619 0.88 2.12 34.36 3.84
141 142 4.935702 ACCCGAACGAACGATGAAATATA 58.064 39.130 0.14 0.00 35.09 0.86
142 143 5.350633 ACCCGAACGAACGATGAAATATAA 58.649 37.500 0.14 0.00 35.09 0.98
180 181 9.832445 ACAATTTATTGATATTGACCGTCTACT 57.168 29.630 9.32 0.00 40.14 2.57
183 184 9.640963 ATTTATTGATATTGACCGTCTACTAGC 57.359 33.333 0.00 0.00 0.00 3.42
184 185 6.902771 ATTGATATTGACCGTCTACTAGCT 57.097 37.500 0.00 0.00 0.00 3.32
185 186 7.997773 ATTGATATTGACCGTCTACTAGCTA 57.002 36.000 0.00 0.00 0.00 3.32
186 187 7.436430 TTGATATTGACCGTCTACTAGCTAG 57.564 40.000 19.44 19.44 0.00 3.42
187 188 6.531923 TGATATTGACCGTCTACTAGCTAGT 58.468 40.000 28.50 28.50 40.24 2.57
188 189 7.674120 TGATATTGACCGTCTACTAGCTAGTA 58.326 38.462 27.73 27.73 37.73 1.82
202 203 2.882137 AGCTAGTAGTGATCTTCTCCGC 59.118 50.000 0.00 0.00 0.00 5.54
203 204 2.350007 GCTAGTAGTGATCTTCTCCGCG 60.350 54.545 0.00 0.00 0.00 6.46
212 213 4.676018 GTGATCTTCTCCGCGATTTACTAC 59.324 45.833 8.23 0.00 0.00 2.73
215 216 3.127548 TCTTCTCCGCGATTTACTACGTT 59.872 43.478 8.23 0.00 0.00 3.99
216 217 2.789208 TCTCCGCGATTTACTACGTTG 58.211 47.619 8.23 0.00 0.00 4.10
222 225 2.988493 GCGATTTACTACGTTGGTGTGA 59.012 45.455 0.00 0.00 0.00 3.58
236 239 2.702478 TGGTGTGAAAATTTCCATGGCA 59.298 40.909 6.96 0.00 0.00 4.92
239 242 4.021544 GGTGTGAAAATTTCCATGGCACTA 60.022 41.667 6.96 0.00 0.00 2.74
303 306 6.153000 CCTAGCTACAACAACTCTCCTCTTAA 59.847 42.308 0.00 0.00 0.00 1.85
378 384 6.595772 CTGGACTAGCACATCAAAGTAATC 57.404 41.667 0.00 0.00 0.00 1.75
382 388 6.408858 ACTAGCACATCAAAGTAATCAACG 57.591 37.500 0.00 0.00 0.00 4.10
456 463 3.646715 GGTGTGGGGGCAGCAGTA 61.647 66.667 0.00 0.00 36.91 2.74
720 732 2.220586 GCCATAGCCCTCCTCTCCC 61.221 68.421 0.00 0.00 0.00 4.30
759 771 6.239714 GCCCTCCAACAATATATCTTCTCTCA 60.240 42.308 0.00 0.00 0.00 3.27
760 772 7.385267 CCCTCCAACAATATATCTTCTCTCAG 58.615 42.308 0.00 0.00 0.00 3.35
761 773 7.234371 CCCTCCAACAATATATCTTCTCTCAGA 59.766 40.741 0.00 0.00 0.00 3.27
763 775 8.187913 TCCAACAATATATCTTCTCTCAGAGG 57.812 38.462 0.57 0.00 0.00 3.69
764 776 6.873076 CCAACAATATATCTTCTCTCAGAGGC 59.127 42.308 0.57 0.00 0.00 4.70
765 777 7.440198 CAACAATATATCTTCTCTCAGAGGCA 58.560 38.462 0.57 0.00 0.00 4.75
767 779 6.782000 ACAATATATCTTCTCTCAGAGGCAGT 59.218 38.462 0.57 0.00 0.00 4.40
771 787 2.298446 TCTTCTCTCAGAGGCAGTGTTG 59.702 50.000 0.57 0.00 0.00 3.33
791 807 2.028130 GCTCTGTCTTCTAGCTAGCCA 58.972 52.381 16.35 8.62 33.40 4.75
863 879 4.374399 TCGGAGAGTGTTTAACAAAGGAC 58.626 43.478 0.00 0.00 0.00 3.85
943 959 1.215655 CGCCGCTGCCTTGTATCTAC 61.216 60.000 0.00 0.00 0.00 2.59
963 985 4.731313 ACCTTTGTTTCTTCCTCCTCAT 57.269 40.909 0.00 0.00 0.00 2.90
964 986 4.657013 ACCTTTGTTTCTTCCTCCTCATC 58.343 43.478 0.00 0.00 0.00 2.92
965 987 4.352298 ACCTTTGTTTCTTCCTCCTCATCT 59.648 41.667 0.00 0.00 0.00 2.90
1142 1175 0.602638 CCGCAGAAAGCAGGTGTGTA 60.603 55.000 0.00 0.00 46.13 2.90
1145 1178 2.426522 GCAGAAAGCAGGTGTGTATGA 58.573 47.619 0.00 0.00 44.79 2.15
1146 1179 3.012518 GCAGAAAGCAGGTGTGTATGAT 58.987 45.455 0.00 0.00 44.79 2.45
1147 1180 3.064545 GCAGAAAGCAGGTGTGTATGATC 59.935 47.826 0.00 0.00 44.79 2.92
1242 1282 3.244596 GGTCTGGCCTGTCTTAACTTCTT 60.245 47.826 3.32 0.00 0.00 2.52
1308 1348 3.007506 TGTCCTTGATTTGCTTCCGTCTA 59.992 43.478 0.00 0.00 0.00 2.59
1348 1388 6.278363 GGATGATCAGTTGAAATTTGGATGG 58.722 40.000 0.09 0.00 0.00 3.51
1497 1538 5.220777 CGTCTTTTGTGGCAACTTCTTCTTA 60.221 40.000 0.00 0.00 37.61 2.10
1504 1545 5.183713 TGTGGCAACTTCTTCTTATCCAATG 59.816 40.000 0.00 0.00 37.61 2.82
1508 1549 7.615365 TGGCAACTTCTTCTTATCCAATGTATT 59.385 33.333 0.00 0.00 37.61 1.89
1585 1628 2.100584 TCACCAAACACTTGTTCCATGC 59.899 45.455 0.00 0.00 37.25 4.06
1588 1631 3.125316 CCAAACACTTGTTCCATGCTTG 58.875 45.455 0.00 0.00 37.25 4.01
1599 1643 2.238521 TCCATGCTTGAGGAACCAAAC 58.761 47.619 0.22 0.00 0.00 2.93
1600 1644 1.962807 CCATGCTTGAGGAACCAAACA 59.037 47.619 0.22 0.00 0.00 2.83
1601 1645 2.029649 CCATGCTTGAGGAACCAAACAG 60.030 50.000 0.22 0.00 0.00 3.16
1602 1646 1.691196 TGCTTGAGGAACCAAACAGG 58.309 50.000 0.00 0.00 45.67 4.00
1603 1647 0.315251 GCTTGAGGAACCAAACAGGC 59.685 55.000 0.00 0.00 43.14 4.85
1605 1649 2.242043 CTTGAGGAACCAAACAGGCAT 58.758 47.619 0.00 0.00 43.14 4.40
1607 1651 1.144708 TGAGGAACCAAACAGGCATGA 59.855 47.619 4.84 0.00 43.14 3.07
1621 1674 7.472334 AACAGGCATGAGTTAATCATTCTTT 57.528 32.000 4.84 0.00 46.97 2.52
1627 1682 8.465201 GGCATGAGTTAATCATTCTTTCTCTTT 58.535 33.333 0.00 0.00 46.97 2.52
1639 1694 6.927294 TTCTTTCTCTTTGTTTGTCTCTCC 57.073 37.500 0.00 0.00 0.00 3.71
1649 1711 1.961793 TTGTCTCTCCCACAAAACCG 58.038 50.000 0.00 0.00 30.67 4.44
1661 1723 3.202906 CACAAAACCGAGTTCTCCTTGA 58.797 45.455 0.00 0.00 0.00 3.02
1702 1768 3.253230 GCCAATTTGATGCACCTACAAC 58.747 45.455 0.00 0.00 0.00 3.32
1724 1790 3.377346 ACTAATGCTATGACTCGCTGG 57.623 47.619 0.00 0.00 0.00 4.85
1733 1799 0.537188 TGACTCGCTGGATTCCCTTC 59.463 55.000 0.00 0.00 0.00 3.46
1742 1808 0.744771 GGATTCCCTTCCTCACACGC 60.745 60.000 0.00 0.00 32.68 5.34
1759 1825 6.837992 TCACACGCCTAATTTTATGTTCTTC 58.162 36.000 0.00 0.00 0.00 2.87
1763 1829 6.093495 CACGCCTAATTTTATGTTCTTCCTGA 59.907 38.462 0.00 0.00 0.00 3.86
1773 1839 4.679373 TGTTCTTCCTGATATCTCTGGC 57.321 45.455 3.98 0.00 39.65 4.85
1812 1878 7.936847 ACCTATTGTTTCTTTTCCCCATTTTTC 59.063 33.333 0.00 0.00 0.00 2.29
1904 1971 3.319122 GGTTGAGAAGATGTGGCAAAAGT 59.681 43.478 0.00 0.00 0.00 2.66
2045 2112 7.176690 AGACTGTTCTTCTTCTCTCTCTTAAGG 59.823 40.741 1.85 0.00 0.00 2.69
2048 2115 3.697045 TCTTCTTCTCTCTCTTAAGGGCG 59.303 47.826 1.85 0.00 0.00 6.13
2085 2152 2.897271 TGTTATGAGGCACACCCAAT 57.103 45.000 0.00 0.00 36.11 3.16
2088 2155 3.257873 TGTTATGAGGCACACCCAATTTG 59.742 43.478 0.00 0.00 36.11 2.32
2173 2245 4.875578 ATATGAATATCCATGGCCTGCT 57.124 40.909 6.96 0.00 0.00 4.24
2214 2286 5.232838 GTCAATGTTTTCTTTTGTGCAGGAG 59.767 40.000 0.00 0.00 0.00 3.69
2215 2287 3.799281 TGTTTTCTTTTGTGCAGGAGG 57.201 42.857 0.00 0.00 0.00 4.30
2302 2374 2.127271 TGTCCCTAACACATGCATGG 57.873 50.000 29.41 20.05 31.20 3.66
2328 2400 5.487131 AGTTTCTGCTCCCTAGAAGAATCTT 59.513 40.000 0.00 0.00 45.23 2.40
2370 2442 2.483363 CCCTATCTTGTGCTCAGAGCTG 60.483 54.545 23.15 10.70 42.97 4.24
2385 2457 5.482908 TCAGAGCTGAAGATCCAAAACTAC 58.517 41.667 0.00 0.00 36.53 2.73
2411 2483 9.073475 CCATAGATCTAGGTAGAAGCATATACC 57.927 40.741 13.06 4.60 41.56 2.73
2415 2491 8.125733 AGATCTAGGTAGAAGCATATACCCATT 58.874 37.037 9.07 0.00 42.10 3.16
2421 2497 7.292591 AGGTAGAAGCATATACCCATTAACACT 59.707 37.037 9.07 0.00 42.10 3.55
2423 2499 9.640963 GTAGAAGCATATACCCATTAACACTAG 57.359 37.037 0.00 0.00 0.00 2.57
2431 2507 9.720769 ATATACCCATTAACACTAGTAATGTGC 57.279 33.333 13.34 0.00 38.86 4.57
2432 2508 4.873827 ACCCATTAACACTAGTAATGTGCG 59.126 41.667 13.34 5.66 38.86 5.34
2434 2510 5.006358 CCCATTAACACTAGTAATGTGCGTC 59.994 44.000 13.34 0.00 38.86 5.19
2441 2517 4.740205 CACTAGTAATGTGCGTCCTGTATG 59.260 45.833 0.00 0.00 0.00 2.39
2442 2518 3.179443 AGTAATGTGCGTCCTGTATGG 57.821 47.619 0.00 0.00 37.10 2.74
2455 2531 5.208294 TCCTGTATGGAGAGAAGTAACCT 57.792 43.478 0.00 0.00 40.56 3.50
2456 2532 5.202004 TCCTGTATGGAGAGAAGTAACCTC 58.798 45.833 0.00 0.00 40.56 3.85
2459 2546 6.183360 CCTGTATGGAGAGAAGTAACCTCTTC 60.183 46.154 0.00 0.00 40.78 2.87
2465 2552 6.903534 TGGAGAGAAGTAACCTCTTCCATTAT 59.096 38.462 0.00 0.00 43.17 1.28
2468 2555 7.136203 AGAGAAGTAACCTCTTCCATTATCCT 58.864 38.462 3.32 0.00 43.17 3.24
2472 2559 7.130681 AGTAACCTCTTCCATTATCCTCAAG 57.869 40.000 0.00 0.00 0.00 3.02
2475 2562 6.642733 ACCTCTTCCATTATCCTCAAGAAA 57.357 37.500 0.00 0.00 0.00 2.52
2499 2587 3.710209 AGAAAACCTAGCACAGCTCAT 57.290 42.857 0.00 0.00 40.44 2.90
2503 2591 0.392193 ACCTAGCACAGCTCATGCAC 60.392 55.000 19.16 0.00 45.92 4.57
2509 2597 4.175489 CAGCTCATGCACGCAGCC 62.175 66.667 9.24 0.00 44.83 4.85
2510 2598 4.710167 AGCTCATGCACGCAGCCA 62.710 61.111 9.24 0.00 44.83 4.75
2530 2653 4.142315 GCCACAAGCATTACTCATCATGTT 60.142 41.667 0.00 0.00 42.97 2.71
2531 2654 5.066375 GCCACAAGCATTACTCATCATGTTA 59.934 40.000 0.00 0.00 42.97 2.41
2532 2655 6.404623 GCCACAAGCATTACTCATCATGTTAA 60.405 38.462 0.00 0.00 42.97 2.01
2533 2656 7.682741 GCCACAAGCATTACTCATCATGTTAAT 60.683 37.037 0.00 0.00 42.97 1.40
2534 2657 7.646526 CCACAAGCATTACTCATCATGTTAATG 59.353 37.037 13.40 13.40 34.88 1.90
2535 2658 8.186163 CACAAGCATTACTCATCATGTTAATGT 58.814 33.333 16.62 7.03 35.15 2.71
2536 2659 8.186163 ACAAGCATTACTCATCATGTTAATGTG 58.814 33.333 16.62 12.61 35.15 3.21
2538 2661 8.687292 AGCATTACTCATCATGTTAATGTGAT 57.313 30.769 16.62 1.05 35.54 3.06
2540 2663 9.390795 GCATTACTCATCATGTTAATGTGATTC 57.609 33.333 16.62 3.84 32.98 2.52
2591 2714 4.096003 CCCGGCCGGACTGACAAT 62.096 66.667 45.44 0.00 37.50 2.71
2805 2928 1.304713 TCCGCGGAACCTCTAACCT 60.305 57.895 28.99 0.00 0.00 3.50
2816 2939 4.618920 ACCTCTAACCTTACAACCACAG 57.381 45.455 0.00 0.00 0.00 3.66
2834 2957 0.614979 AGGACCACTACATGCTCGGT 60.615 55.000 0.00 0.00 0.00 4.69
2860 2983 1.530183 GCTCCCTGAATCCCATGGC 60.530 63.158 6.09 0.00 31.45 4.40
2861 2984 2.004408 GCTCCCTGAATCCCATGGCT 62.004 60.000 6.09 0.00 31.45 4.75
2895 3021 1.374343 CTCCGCGGTACAGCTACAGA 61.374 60.000 27.15 0.00 34.40 3.41
3115 3241 3.302597 GTACGGAATGTACGGCGC 58.697 61.111 6.90 0.00 43.71 6.53
3394 3530 3.370978 CGCACGTAAAGAAGGTCATCAAT 59.629 43.478 0.00 0.00 0.00 2.57
3395 3531 4.492570 CGCACGTAAAGAAGGTCATCAATC 60.493 45.833 0.00 0.00 0.00 2.67
3396 3532 4.391830 GCACGTAAAGAAGGTCATCAATCA 59.608 41.667 0.00 0.00 0.00 2.57
3397 3533 5.106712 GCACGTAAAGAAGGTCATCAATCAA 60.107 40.000 0.00 0.00 0.00 2.57
3398 3534 6.403636 GCACGTAAAGAAGGTCATCAATCAAT 60.404 38.462 0.00 0.00 0.00 2.57
3399 3535 7.182761 CACGTAAAGAAGGTCATCAATCAATC 58.817 38.462 0.00 0.00 0.00 2.67
3400 3536 6.878923 ACGTAAAGAAGGTCATCAATCAATCA 59.121 34.615 0.00 0.00 0.00 2.57
3401 3537 7.390440 ACGTAAAGAAGGTCATCAATCAATCAA 59.610 33.333 0.00 0.00 0.00 2.57
3402 3538 7.907045 CGTAAAGAAGGTCATCAATCAATCAAG 59.093 37.037 0.00 0.00 0.00 3.02
3403 3539 8.950210 GTAAAGAAGGTCATCAATCAATCAAGA 58.050 33.333 0.00 0.00 0.00 3.02
3439 3575 4.760204 AGGTGTGTGTTAATTTCTACTGCC 59.240 41.667 0.00 0.00 0.00 4.85
3441 3577 3.187637 TGTGTGTTAATTTCTACTGCCGC 59.812 43.478 0.00 0.00 0.00 6.53
3442 3578 2.413796 TGTGTTAATTTCTACTGCCGCG 59.586 45.455 0.00 0.00 0.00 6.46
3487 3623 8.755018 CGTTTCTTTTATGTTTTGCTTTGATCT 58.245 29.630 0.00 0.00 0.00 2.75
3508 3644 8.154203 TGATCTGTGTAGTGAAGTGGATTAAAA 58.846 33.333 0.00 0.00 0.00 1.52
3591 3727 0.602638 CGCTGTGTGTGTATGTGGGT 60.603 55.000 0.00 0.00 0.00 4.51
3625 3768 7.453393 GGATCAAGATTCTCTCTCTCTCTCTA 58.547 42.308 0.00 0.00 31.03 2.43
3636 3780 6.385443 TCTCTCTCTCTCTATCTCTCTCCTT 58.615 44.000 0.00 0.00 0.00 3.36
3641 3785 6.615316 TCTCTCTCTATCTCTCTCCTTTCTCA 59.385 42.308 0.00 0.00 0.00 3.27
3642 3786 7.127186 TCTCTCTCTATCTCTCTCCTTTCTCAA 59.873 40.741 0.00 0.00 0.00 3.02
3683 3831 5.597182 TGTTACTGTTGTTGTACCTCTCTCT 59.403 40.000 0.00 0.00 0.00 3.10
3684 3832 4.857509 ACTGTTGTTGTACCTCTCTCTC 57.142 45.455 0.00 0.00 0.00 3.20
3951 4119 3.891366 TCATTCACTCACTCACTCACTCA 59.109 43.478 0.00 0.00 0.00 3.41
3952 4120 3.717400 TTCACTCACTCACTCACTCAC 57.283 47.619 0.00 0.00 0.00 3.51
3953 4121 2.654863 TCACTCACTCACTCACTCACA 58.345 47.619 0.00 0.00 0.00 3.58
3954 4122 2.359214 TCACTCACTCACTCACTCACAC 59.641 50.000 0.00 0.00 0.00 3.82
3955 4123 2.099756 CACTCACTCACTCACTCACACA 59.900 50.000 0.00 0.00 0.00 3.72
3957 4125 2.099405 TCACTCACTCACTCACACACA 58.901 47.619 0.00 0.00 0.00 3.72
3958 4126 2.159240 TCACTCACTCACTCACACACAC 60.159 50.000 0.00 0.00 0.00 3.82
3959 4127 2.103373 ACTCACTCACTCACACACACT 58.897 47.619 0.00 0.00 0.00 3.55
3960 4128 2.497675 ACTCACTCACTCACACACACTT 59.502 45.455 0.00 0.00 0.00 3.16
3961 4129 2.862536 CTCACTCACTCACACACACTTG 59.137 50.000 0.00 0.00 0.00 3.16
3962 4130 2.233676 TCACTCACTCACACACACTTGT 59.766 45.455 0.00 0.00 35.84 3.16
4091 4259 0.944311 CGGTTTGTGGTCTCGTGGAG 60.944 60.000 0.00 0.00 0.00 3.86
4102 4270 3.006003 GGTCTCGTGGAGTTTTCTTCTCT 59.994 47.826 0.00 0.00 33.06 3.10
4177 4345 4.393680 AGTGCTTACTTGTTTCGTTTCACA 59.606 37.500 0.00 0.00 0.00 3.58
4225 4393 7.560991 TGGAACATCCATATTTTGTTCTAGCAT 59.439 33.333 16.09 0.00 42.67 3.79
4249 4417 7.067496 TCTTCTCTGACCTAGACATGTTTTT 57.933 36.000 0.00 0.00 0.00 1.94
4269 4437 6.916360 TTTTTCTAGTACCTCCGTTCCTAA 57.084 37.500 0.00 0.00 0.00 2.69
4270 4438 6.916360 TTTTCTAGTACCTCCGTTCCTAAA 57.084 37.500 0.00 0.00 0.00 1.85
4271 4439 7.486407 TTTTCTAGTACCTCCGTTCCTAAAT 57.514 36.000 0.00 0.00 0.00 1.40
4272 4440 8.593945 TTTTCTAGTACCTCCGTTCCTAAATA 57.406 34.615 0.00 0.00 0.00 1.40
4273 4441 8.773033 TTTCTAGTACCTCCGTTCCTAAATAT 57.227 34.615 0.00 0.00 0.00 1.28
4274 4442 9.866655 TTTCTAGTACCTCCGTTCCTAAATATA 57.133 33.333 0.00 0.00 0.00 0.86
4275 4443 9.866655 TTCTAGTACCTCCGTTCCTAAATATAA 57.133 33.333 0.00 0.00 0.00 0.98
4276 4444 9.512588 TCTAGTACCTCCGTTCCTAAATATAAG 57.487 37.037 0.00 0.00 0.00 1.73
4277 4445 9.294614 CTAGTACCTCCGTTCCTAAATATAAGT 57.705 37.037 0.00 0.00 0.00 2.24
4278 4446 8.175925 AGTACCTCCGTTCCTAAATATAAGTC 57.824 38.462 0.00 0.00 0.00 3.01
4279 4447 8.003629 AGTACCTCCGTTCCTAAATATAAGTCT 58.996 37.037 0.00 0.00 0.00 3.24
4280 4448 7.672122 ACCTCCGTTCCTAAATATAAGTCTT 57.328 36.000 0.00 0.00 0.00 3.01
4281 4449 8.087303 ACCTCCGTTCCTAAATATAAGTCTTT 57.913 34.615 0.00 0.00 0.00 2.52
4282 4450 8.546322 ACCTCCGTTCCTAAATATAAGTCTTTT 58.454 33.333 0.00 0.00 0.00 2.27
4283 4451 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
4310 4478 8.307483 AGAGATTCCATTATGAACTACATACGG 58.693 37.037 0.00 0.00 40.62 4.02
4311 4479 8.190326 AGATTCCATTATGAACTACATACGGA 57.810 34.615 0.00 0.00 40.62 4.69
4312 4480 8.307483 AGATTCCATTATGAACTACATACGGAG 58.693 37.037 0.00 0.00 40.89 4.63
4313 4481 5.779922 TCCATTATGAACTACATACGGAGC 58.220 41.667 0.00 0.00 40.62 4.70
4314 4482 5.303333 TCCATTATGAACTACATACGGAGCA 59.697 40.000 0.00 0.00 40.62 4.26
4315 4483 5.989168 CCATTATGAACTACATACGGAGCAA 59.011 40.000 0.00 0.00 40.62 3.91
4316 4484 6.146184 CCATTATGAACTACATACGGAGCAAG 59.854 42.308 0.00 0.00 40.62 4.01
4317 4485 6.459670 TTATGAACTACATACGGAGCAAGA 57.540 37.500 0.00 0.00 40.62 3.02
4318 4486 5.537300 ATGAACTACATACGGAGCAAGAT 57.463 39.130 0.00 0.00 37.46 2.40
4319 4487 4.682787 TGAACTACATACGGAGCAAGATG 58.317 43.478 0.00 0.00 0.00 2.90
4320 4488 4.401202 TGAACTACATACGGAGCAAGATGA 59.599 41.667 0.00 0.00 0.00 2.92
4321 4489 4.576216 ACTACATACGGAGCAAGATGAG 57.424 45.455 0.00 0.00 0.00 2.90
4322 4490 3.954904 ACTACATACGGAGCAAGATGAGT 59.045 43.478 0.00 0.00 0.00 3.41
4323 4491 3.170791 ACATACGGAGCAAGATGAGTG 57.829 47.619 0.00 0.00 0.00 3.51
4324 4492 2.760650 ACATACGGAGCAAGATGAGTGA 59.239 45.455 0.00 0.00 0.00 3.41
4325 4493 3.195610 ACATACGGAGCAAGATGAGTGAA 59.804 43.478 0.00 0.00 0.00 3.18
4326 4494 4.141846 ACATACGGAGCAAGATGAGTGAAT 60.142 41.667 0.00 0.00 0.00 2.57
4327 4495 2.898705 ACGGAGCAAGATGAGTGAATC 58.101 47.619 0.00 0.00 0.00 2.52
4328 4496 2.499289 ACGGAGCAAGATGAGTGAATCT 59.501 45.455 0.00 0.00 38.59 2.40
4329 4497 3.701542 ACGGAGCAAGATGAGTGAATCTA 59.298 43.478 0.00 0.00 35.83 1.98
4330 4498 4.047822 CGGAGCAAGATGAGTGAATCTAC 58.952 47.826 0.00 0.00 35.83 2.59
4331 4499 4.440663 CGGAGCAAGATGAGTGAATCTACA 60.441 45.833 0.00 0.00 35.83 2.74
4332 4500 4.808364 GGAGCAAGATGAGTGAATCTACAC 59.192 45.833 0.00 0.00 35.83 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.965902 ATCTTCTTACAAGTTGTATGGAAATCT 57.034 29.630 22.08 11.97 32.20 2.40
1 2 9.994432 CATCTTCTTACAAGTTGTATGGAAATC 57.006 33.333 22.08 0.00 32.20 2.17
2 3 9.520515 ACATCTTCTTACAAGTTGTATGGAAAT 57.479 29.630 22.08 16.84 32.20 2.17
3 4 8.918202 ACATCTTCTTACAAGTTGTATGGAAA 57.082 30.769 22.08 15.89 32.20 3.13
4 5 7.606456 GGACATCTTCTTACAAGTTGTATGGAA 59.394 37.037 22.08 21.31 32.20 3.53
5 6 7.103641 GGACATCTTCTTACAAGTTGTATGGA 58.896 38.462 22.08 15.98 32.20 3.41
6 7 6.878923 TGGACATCTTCTTACAAGTTGTATGG 59.121 38.462 22.08 15.61 32.20 2.74
7 8 7.905604 TGGACATCTTCTTACAAGTTGTATG 57.094 36.000 16.26 17.46 32.20 2.39
8 9 7.117812 CGTTGGACATCTTCTTACAAGTTGTAT 59.882 37.037 16.26 0.00 32.20 2.29
9 10 6.422701 CGTTGGACATCTTCTTACAAGTTGTA 59.577 38.462 11.75 11.75 32.22 2.41
10 11 5.236478 CGTTGGACATCTTCTTACAAGTTGT 59.764 40.000 14.05 14.05 34.09 3.32
11 12 5.334105 CCGTTGGACATCTTCTTACAAGTTG 60.334 44.000 0.00 0.00 0.00 3.16
12 13 4.755123 CCGTTGGACATCTTCTTACAAGTT 59.245 41.667 0.00 0.00 0.00 2.66
13 14 4.039973 TCCGTTGGACATCTTCTTACAAGT 59.960 41.667 0.00 0.00 0.00 3.16
14 15 4.566004 TCCGTTGGACATCTTCTTACAAG 58.434 43.478 0.00 0.00 0.00 3.16
15 16 4.610605 TCCGTTGGACATCTTCTTACAA 57.389 40.909 0.00 0.00 0.00 2.41
16 17 4.282449 TCTTCCGTTGGACATCTTCTTACA 59.718 41.667 0.00 0.00 0.00 2.41
17 18 4.817517 TCTTCCGTTGGACATCTTCTTAC 58.182 43.478 0.00 0.00 0.00 2.34
18 19 4.770531 TCTCTTCCGTTGGACATCTTCTTA 59.229 41.667 0.00 0.00 0.00 2.10
19 20 3.578716 TCTCTTCCGTTGGACATCTTCTT 59.421 43.478 0.00 0.00 0.00 2.52
20 21 3.165875 TCTCTTCCGTTGGACATCTTCT 58.834 45.455 0.00 0.00 0.00 2.85
21 22 3.193691 TCTCTCTTCCGTTGGACATCTTC 59.806 47.826 0.00 0.00 0.00 2.87
22 23 3.056465 GTCTCTCTTCCGTTGGACATCTT 60.056 47.826 0.00 0.00 0.00 2.40
23 24 2.494073 GTCTCTCTTCCGTTGGACATCT 59.506 50.000 0.00 0.00 0.00 2.90
24 25 2.494073 AGTCTCTCTTCCGTTGGACATC 59.506 50.000 0.00 0.00 0.00 3.06
25 26 2.530701 AGTCTCTCTTCCGTTGGACAT 58.469 47.619 0.00 0.00 0.00 3.06
26 27 1.996798 AGTCTCTCTTCCGTTGGACA 58.003 50.000 0.00 0.00 0.00 4.02
27 28 2.818432 TGTAGTCTCTCTTCCGTTGGAC 59.182 50.000 0.00 0.00 0.00 4.02
28 29 3.150458 TGTAGTCTCTCTTCCGTTGGA 57.850 47.619 0.00 0.00 0.00 3.53
29 30 3.181485 GGATGTAGTCTCTCTTCCGTTGG 60.181 52.174 0.00 0.00 0.00 3.77
30 31 3.697045 AGGATGTAGTCTCTCTTCCGTTG 59.303 47.826 0.00 0.00 34.46 4.10
31 32 3.970842 AGGATGTAGTCTCTCTTCCGTT 58.029 45.455 0.00 0.00 34.46 4.44
32 33 3.655615 AGGATGTAGTCTCTCTTCCGT 57.344 47.619 0.00 0.00 34.46 4.69
33 34 4.276431 GGTTAGGATGTAGTCTCTCTTCCG 59.724 50.000 0.00 0.00 34.46 4.30
34 35 5.202004 TGGTTAGGATGTAGTCTCTCTTCC 58.798 45.833 0.00 0.00 0.00 3.46
35 36 6.969993 ATGGTTAGGATGTAGTCTCTCTTC 57.030 41.667 0.00 0.00 0.00 2.87
36 37 6.778559 GGTATGGTTAGGATGTAGTCTCTCTT 59.221 42.308 0.00 0.00 0.00 2.85
37 38 6.308566 GGTATGGTTAGGATGTAGTCTCTCT 58.691 44.000 0.00 0.00 0.00 3.10
38 39 5.477637 GGGTATGGTTAGGATGTAGTCTCTC 59.522 48.000 0.00 0.00 0.00 3.20
39 40 5.103215 TGGGTATGGTTAGGATGTAGTCTCT 60.103 44.000 0.00 0.00 0.00 3.10
40 41 5.145564 TGGGTATGGTTAGGATGTAGTCTC 58.854 45.833 0.00 0.00 0.00 3.36
41 42 5.152306 TGGGTATGGTTAGGATGTAGTCT 57.848 43.478 0.00 0.00 0.00 3.24
42 43 5.881923 TTGGGTATGGTTAGGATGTAGTC 57.118 43.478 0.00 0.00 0.00 2.59
43 44 5.908831 TCATTGGGTATGGTTAGGATGTAGT 59.091 40.000 0.00 0.00 34.85 2.73
44 45 6.433847 TCATTGGGTATGGTTAGGATGTAG 57.566 41.667 0.00 0.00 34.85 2.74
45 46 6.746900 GCATCATTGGGTATGGTTAGGATGTA 60.747 42.308 0.00 0.00 34.85 2.29
46 47 5.634118 CATCATTGGGTATGGTTAGGATGT 58.366 41.667 0.00 0.00 34.85 3.06
47 48 4.460382 GCATCATTGGGTATGGTTAGGATG 59.540 45.833 0.00 0.00 34.85 3.51
48 49 4.509122 GGCATCATTGGGTATGGTTAGGAT 60.509 45.833 0.00 0.00 34.85 3.24
49 50 3.181434 GGCATCATTGGGTATGGTTAGGA 60.181 47.826 0.00 0.00 34.85 2.94
50 51 3.157087 GGCATCATTGGGTATGGTTAGG 58.843 50.000 0.00 0.00 34.85 2.69
51 52 2.813754 CGGCATCATTGGGTATGGTTAG 59.186 50.000 0.00 0.00 34.85 2.34
52 53 2.439880 TCGGCATCATTGGGTATGGTTA 59.560 45.455 0.00 0.00 34.85 2.85
53 54 1.214175 TCGGCATCATTGGGTATGGTT 59.786 47.619 0.00 0.00 34.85 3.67
54 55 0.843309 TCGGCATCATTGGGTATGGT 59.157 50.000 0.00 0.00 34.85 3.55
55 56 2.205022 ATCGGCATCATTGGGTATGG 57.795 50.000 0.00 0.00 34.85 2.74
56 57 3.569277 TCAAATCGGCATCATTGGGTATG 59.431 43.478 0.00 0.00 35.45 2.39
57 58 3.831323 TCAAATCGGCATCATTGGGTAT 58.169 40.909 0.00 0.00 0.00 2.73
58 59 3.289407 TCAAATCGGCATCATTGGGTA 57.711 42.857 0.00 0.00 0.00 3.69
59 60 2.142356 TCAAATCGGCATCATTGGGT 57.858 45.000 0.00 0.00 0.00 4.51
60 61 3.386486 CAATCAAATCGGCATCATTGGG 58.614 45.455 0.00 0.00 0.00 4.12
61 62 3.068448 TCCAATCAAATCGGCATCATTGG 59.932 43.478 9.01 9.01 41.09 3.16
62 63 4.310357 TCCAATCAAATCGGCATCATTG 57.690 40.909 0.00 0.00 0.00 2.82
63 64 5.163385 ACAATCCAATCAAATCGGCATCATT 60.163 36.000 0.00 0.00 0.00 2.57
64 65 4.342951 ACAATCCAATCAAATCGGCATCAT 59.657 37.500 0.00 0.00 0.00 2.45
65 66 3.700539 ACAATCCAATCAAATCGGCATCA 59.299 39.130 0.00 0.00 0.00 3.07
66 67 4.311816 ACAATCCAATCAAATCGGCATC 57.688 40.909 0.00 0.00 0.00 3.91
67 68 4.741321 AACAATCCAATCAAATCGGCAT 57.259 36.364 0.00 0.00 0.00 4.40
68 69 4.220382 AGAAACAATCCAATCAAATCGGCA 59.780 37.500 0.00 0.00 0.00 5.69
69 70 4.747810 AGAAACAATCCAATCAAATCGGC 58.252 39.130 0.00 0.00 0.00 5.54
70 71 7.320443 TCTAGAAACAATCCAATCAAATCGG 57.680 36.000 0.00 0.00 0.00 4.18
71 72 8.615211 TCATCTAGAAACAATCCAATCAAATCG 58.385 33.333 0.00 0.00 0.00 3.34
75 76 9.904198 TGTATCATCTAGAAACAATCCAATCAA 57.096 29.630 0.00 0.00 0.00 2.57
78 79 8.790718 GCATGTATCATCTAGAAACAATCCAAT 58.209 33.333 0.00 0.00 0.00 3.16
79 80 7.994911 AGCATGTATCATCTAGAAACAATCCAA 59.005 33.333 0.00 0.00 0.00 3.53
80 81 7.512130 AGCATGTATCATCTAGAAACAATCCA 58.488 34.615 0.00 0.00 0.00 3.41
81 82 7.976135 AGCATGTATCATCTAGAAACAATCC 57.024 36.000 0.00 0.00 0.00 3.01
82 83 9.481340 TGTAGCATGTATCATCTAGAAACAATC 57.519 33.333 0.00 0.00 0.00 2.67
83 84 9.836864 TTGTAGCATGTATCATCTAGAAACAAT 57.163 29.630 0.00 0.00 0.00 2.71
84 85 9.665719 TTTGTAGCATGTATCATCTAGAAACAA 57.334 29.630 0.00 0.00 0.00 2.83
85 86 9.836864 ATTTGTAGCATGTATCATCTAGAAACA 57.163 29.630 0.00 0.00 30.58 2.83
96 97 9.946165 GGGTTAACTAAATTTGTAGCATGTATC 57.054 33.333 5.42 0.00 0.00 2.24
97 98 8.617809 CGGGTTAACTAAATTTGTAGCATGTAT 58.382 33.333 5.42 0.00 0.00 2.29
98 99 7.823310 TCGGGTTAACTAAATTTGTAGCATGTA 59.177 33.333 5.42 0.00 0.00 2.29
99 100 6.655848 TCGGGTTAACTAAATTTGTAGCATGT 59.344 34.615 5.42 0.00 0.00 3.21
100 101 7.079182 TCGGGTTAACTAAATTTGTAGCATG 57.921 36.000 5.42 0.00 0.00 4.06
101 102 7.532571 GTTCGGGTTAACTAAATTTGTAGCAT 58.467 34.615 5.42 0.00 0.00 3.79
102 103 6.347563 CGTTCGGGTTAACTAAATTTGTAGCA 60.348 38.462 5.42 0.00 0.00 3.49
103 104 6.017325 CGTTCGGGTTAACTAAATTTGTAGC 58.983 40.000 5.42 0.00 0.00 3.58
104 105 7.350110 TCGTTCGGGTTAACTAAATTTGTAG 57.650 36.000 5.42 0.00 0.00 2.74
105 106 7.568497 CGTTCGTTCGGGTTAACTAAATTTGTA 60.568 37.037 5.42 0.00 0.00 2.41
106 107 6.429624 GTTCGTTCGGGTTAACTAAATTTGT 58.570 36.000 5.42 0.00 0.00 2.83
107 108 5.561125 CGTTCGTTCGGGTTAACTAAATTTG 59.439 40.000 5.42 0.00 0.00 2.32
108 109 5.465056 TCGTTCGTTCGGGTTAACTAAATTT 59.535 36.000 5.42 0.00 0.00 1.82
109 110 4.987912 TCGTTCGTTCGGGTTAACTAAATT 59.012 37.500 5.42 0.00 0.00 1.82
110 111 4.555262 TCGTTCGTTCGGGTTAACTAAAT 58.445 39.130 5.42 0.00 0.00 1.40
111 112 3.971150 TCGTTCGTTCGGGTTAACTAAA 58.029 40.909 5.42 0.00 0.00 1.85
112 113 3.634568 TCGTTCGTTCGGGTTAACTAA 57.365 42.857 5.42 0.00 0.00 2.24
113 114 3.190327 TCATCGTTCGTTCGGGTTAACTA 59.810 43.478 5.42 0.00 0.00 2.24
114 115 2.030007 TCATCGTTCGTTCGGGTTAACT 60.030 45.455 5.42 0.00 0.00 2.24
115 116 2.327568 TCATCGTTCGTTCGGGTTAAC 58.672 47.619 0.00 0.00 0.00 2.01
116 117 2.721274 TCATCGTTCGTTCGGGTTAA 57.279 45.000 2.85 0.00 0.00 2.01
117 118 2.721274 TTCATCGTTCGTTCGGGTTA 57.279 45.000 2.85 0.00 0.00 2.85
118 119 1.868469 TTTCATCGTTCGTTCGGGTT 58.132 45.000 2.85 0.00 0.00 4.11
119 120 2.088950 ATTTCATCGTTCGTTCGGGT 57.911 45.000 2.85 0.00 0.00 5.28
120 121 5.893512 TTATATTTCATCGTTCGTTCGGG 57.106 39.130 2.85 0.00 0.00 5.14
121 122 7.560700 TCATTTATATTTCATCGTTCGTTCGG 58.439 34.615 2.85 0.00 0.00 4.30
159 160 8.405418 AGCTAGTAGACGGTCAATATCAATAA 57.595 34.615 11.27 0.00 0.00 1.40
161 162 6.902771 AGCTAGTAGACGGTCAATATCAAT 57.097 37.500 11.27 0.00 0.00 2.57
162 163 6.996879 ACTAGCTAGTAGACGGTCAATATCAA 59.003 38.462 24.97 0.00 34.13 2.57
177 178 6.457355 CGGAGAAGATCACTACTAGCTAGTA 58.543 44.000 27.73 27.73 37.73 1.82
178 179 5.302360 CGGAGAAGATCACTACTAGCTAGT 58.698 45.833 28.50 28.50 40.24 2.57
179 180 4.153475 GCGGAGAAGATCACTACTAGCTAG 59.847 50.000 19.44 19.44 0.00 3.42
180 181 4.066490 GCGGAGAAGATCACTACTAGCTA 58.934 47.826 0.00 0.00 0.00 3.32
181 182 2.882137 GCGGAGAAGATCACTACTAGCT 59.118 50.000 0.00 0.00 0.00 3.32
182 183 2.350007 CGCGGAGAAGATCACTACTAGC 60.350 54.545 0.00 0.00 0.00 3.42
183 184 3.132160 TCGCGGAGAAGATCACTACTAG 58.868 50.000 6.13 0.00 0.00 2.57
184 185 3.189618 TCGCGGAGAAGATCACTACTA 57.810 47.619 6.13 0.00 0.00 1.82
185 186 2.039818 TCGCGGAGAAGATCACTACT 57.960 50.000 6.13 0.00 0.00 2.57
186 187 3.357166 AATCGCGGAGAAGATCACTAC 57.643 47.619 6.13 0.00 0.00 2.73
187 188 4.579340 AGTAAATCGCGGAGAAGATCACTA 59.421 41.667 6.13 0.00 0.00 2.74
188 189 2.969628 AAATCGCGGAGAAGATCACT 57.030 45.000 6.13 0.00 0.00 3.41
189 190 3.707793 AGTAAATCGCGGAGAAGATCAC 58.292 45.455 6.13 0.00 0.00 3.06
190 191 4.554134 CGTAGTAAATCGCGGAGAAGATCA 60.554 45.833 6.13 0.00 0.00 2.92
191 192 3.907194 CGTAGTAAATCGCGGAGAAGATC 59.093 47.826 6.13 0.00 0.00 2.75
192 193 3.314635 ACGTAGTAAATCGCGGAGAAGAT 59.685 43.478 6.13 0.00 41.94 2.40
202 203 5.579384 TTTCACACCAACGTAGTAAATCG 57.421 39.130 0.00 0.00 45.00 3.34
203 204 8.791355 AAATTTTCACACCAACGTAGTAAATC 57.209 30.769 0.00 0.00 45.00 2.17
212 213 3.740321 CCATGGAAATTTTCACACCAACG 59.260 43.478 5.56 0.00 34.28 4.10
215 216 2.702478 TGCCATGGAAATTTTCACACCA 59.298 40.909 18.40 0.00 35.09 4.17
216 217 3.066380 GTGCCATGGAAATTTTCACACC 58.934 45.455 18.40 0.00 0.00 4.16
222 225 5.652452 GGTCTAGTAGTGCCATGGAAATTTT 59.348 40.000 18.40 0.00 0.00 1.82
355 358 6.108687 TGATTACTTTGATGTGCTAGTCCAG 58.891 40.000 0.00 0.00 0.00 3.86
356 359 6.048732 TGATTACTTTGATGTGCTAGTCCA 57.951 37.500 0.00 0.00 0.00 4.02
357 360 6.455646 CGTTGATTACTTTGATGTGCTAGTCC 60.456 42.308 0.00 0.00 0.00 3.85
358 361 6.310467 TCGTTGATTACTTTGATGTGCTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
359 362 6.163476 TCGTTGATTACTTTGATGTGCTAGT 58.837 36.000 0.00 0.00 0.00 2.57
378 384 2.671177 CCTTCGTGCCTGCTCGTTG 61.671 63.158 12.54 7.32 34.95 4.10
382 388 1.092345 GGAATCCTTCGTGCCTGCTC 61.092 60.000 0.00 0.00 0.00 4.26
452 459 4.593033 TAGCCTAGCGGGGTACTG 57.407 61.111 6.59 0.00 45.03 2.74
455 462 0.395586 TTTCGTAGCCTAGCGGGGTA 60.396 55.000 6.59 6.59 45.03 3.69
536 543 5.703130 GGATGCTCTAAGAAGTCAAAGTGTT 59.297 40.000 0.00 0.00 0.00 3.32
720 732 1.228675 AGGGCACAGAAAGCAAGGG 60.229 57.895 0.00 0.00 0.00 3.95
764 776 2.992543 GCTAGAAGACAGAGCAACACTG 59.007 50.000 0.00 0.00 40.68 3.66
765 777 2.896685 AGCTAGAAGACAGAGCAACACT 59.103 45.455 0.00 0.00 38.73 3.55
767 779 3.119316 GCTAGCTAGAAGACAGAGCAACA 60.119 47.826 25.15 0.00 38.73 3.33
771 787 2.028130 TGGCTAGCTAGAAGACAGAGC 58.972 52.381 25.15 7.90 36.42 4.09
845 861 4.146745 ACCGTCCTTTGTTAAACACTCT 57.853 40.909 0.00 0.00 0.00 3.24
846 862 4.888038 AACCGTCCTTTGTTAAACACTC 57.112 40.909 0.00 0.00 0.00 3.51
863 879 0.671251 CTAGCTGCTCCTCCTAACCG 59.329 60.000 4.91 0.00 0.00 4.44
943 959 4.916183 AGATGAGGAGGAAGAAACAAAGG 58.084 43.478 0.00 0.00 0.00 3.11
1142 1175 0.835941 AAGGCAGGAAGCTCGATCAT 59.164 50.000 0.00 0.00 44.79 2.45
1145 1178 1.137872 CTACAAGGCAGGAAGCTCGAT 59.862 52.381 0.00 0.00 44.79 3.59
1146 1179 0.532573 CTACAAGGCAGGAAGCTCGA 59.467 55.000 0.00 0.00 44.79 4.04
1147 1180 0.532573 TCTACAAGGCAGGAAGCTCG 59.467 55.000 0.00 0.00 44.79 5.03
1308 1348 6.018469 TGATCATCCCCAAGTCAAGAAAAAT 58.982 36.000 0.00 0.00 0.00 1.82
1457 1498 1.200716 AGACGACGGCATTTCGACTTA 59.799 47.619 2.19 0.00 38.10 2.24
1497 1538 9.003658 GGAAATGATAAGTCGAATACATTGGAT 57.996 33.333 11.42 0.00 0.00 3.41
1544 1585 7.161404 TGGTGATCCTATTATGTAGTGAATGC 58.839 38.462 0.00 0.00 34.23 3.56
1559 1602 4.141367 TGGAACAAGTGTTTGGTGATCCTA 60.141 41.667 0.00 0.00 38.56 2.94
1585 1628 1.691196 TGCCTGTTTGGTTCCTCAAG 58.309 50.000 0.00 0.00 38.35 3.02
1588 1631 1.815003 CTCATGCCTGTTTGGTTCCTC 59.185 52.381 0.00 0.00 38.35 3.71
1599 1643 7.282675 AGAGAAAGAATGATTAACTCATGCCTG 59.717 37.037 0.00 0.00 44.03 4.85
1600 1644 7.344913 AGAGAAAGAATGATTAACTCATGCCT 58.655 34.615 0.00 1.71 44.03 4.75
1601 1645 7.565323 AGAGAAAGAATGATTAACTCATGCC 57.435 36.000 0.00 0.04 44.03 4.40
1602 1646 9.286946 CAAAGAGAAAGAATGATTAACTCATGC 57.713 33.333 0.00 1.25 44.03 4.06
1621 1674 3.454447 TGTGGGAGAGACAAACAAAGAGA 59.546 43.478 0.00 0.00 0.00 3.10
1627 1682 3.020984 GGTTTTGTGGGAGAGACAAACA 58.979 45.455 0.00 0.00 41.76 2.83
1639 1694 2.256117 AGGAGAACTCGGTTTTGTGG 57.744 50.000 0.00 0.00 0.00 4.17
1667 1729 7.201626 GCATCAAATTGGCAAATTGTATGCTAA 60.202 33.333 31.25 16.15 46.15 3.09
1702 1768 3.492383 CCAGCGAGTCATAGCATTAGTTG 59.508 47.826 0.00 0.00 35.48 3.16
1724 1790 0.744771 GGCGTGTGAGGAAGGGAATC 60.745 60.000 0.00 0.00 0.00 2.52
1733 1799 5.354234 AGAACATAAAATTAGGCGTGTGAGG 59.646 40.000 0.00 0.00 0.00 3.86
1759 1825 6.930164 GCATATGATTAGCCAGAGATATCAGG 59.070 42.308 6.97 5.08 0.00 3.86
1763 1829 7.788867 AGGTAGCATATGATTAGCCAGAGATAT 59.211 37.037 6.97 0.00 0.00 1.63
1799 1865 8.713708 TGTTCAATACTAGAAAAATGGGGAAA 57.286 30.769 0.00 0.00 0.00 3.13
1853 1920 8.721019 ATTGTGATAACAAATTAAGGCCATTG 57.279 30.769 5.01 4.60 32.94 2.82
1904 1971 5.693769 AGTTTAGCCATCTAAGCCTACAA 57.306 39.130 0.00 0.00 36.88 2.41
2045 2112 0.950555 TGTGAGAGAACATGCACGCC 60.951 55.000 0.00 0.00 34.12 5.68
2048 2115 4.494350 AACAATGTGAGAGAACATGCAC 57.506 40.909 0.00 0.00 39.89 4.57
2107 2175 9.829507 GGACTAGCATAGCTTTATATTCATGAT 57.170 33.333 0.00 0.00 44.39 2.45
2173 2245 9.883142 AAACATTGACAGGAACAATTCTTTTAA 57.117 25.926 0.00 0.00 36.07 1.52
2214 2286 5.055812 TCATCCAGAAAACATTTTGTTGCC 58.944 37.500 0.00 0.00 40.14 4.52
2215 2287 6.601741 TTCATCCAGAAAACATTTTGTTGC 57.398 33.333 0.00 0.00 40.14 4.17
2284 2356 0.740737 GCCATGCATGTGTTAGGGAC 59.259 55.000 24.58 1.51 0.00 4.46
2328 2400 6.081356 AGGGAAAACATATCCTTTTTGTGGA 58.919 36.000 0.00 0.00 37.14 4.02
2370 2442 9.921637 CTAGATCTATGGTAGTTTTGGATCTTC 57.078 37.037 2.11 0.00 39.07 2.87
2385 2457 9.073475 GGTATATGCTTCTACCTAGATCTATGG 57.927 40.741 2.11 9.42 35.51 2.74
2408 2480 6.044046 CGCACATTACTAGTGTTAATGGGTA 58.956 40.000 16.72 0.00 37.05 3.69
2409 2481 4.873827 CGCACATTACTAGTGTTAATGGGT 59.126 41.667 16.72 0.00 37.05 4.51
2411 2483 5.006358 GGACGCACATTACTAGTGTTAATGG 59.994 44.000 17.21 9.76 39.17 3.16
2415 2491 4.219070 ACAGGACGCACATTACTAGTGTTA 59.781 41.667 5.39 0.00 39.17 2.41
2421 2497 3.955551 TCCATACAGGACGCACATTACTA 59.044 43.478 0.00 0.00 43.07 1.82
2423 2499 3.123804 CTCCATACAGGACGCACATTAC 58.876 50.000 0.00 0.00 43.07 1.89
2431 2507 4.202030 GGTTACTTCTCTCCATACAGGACG 60.202 50.000 0.00 0.00 43.07 4.79
2432 2508 4.957327 AGGTTACTTCTCTCCATACAGGAC 59.043 45.833 0.00 0.00 43.07 3.85
2434 2510 5.205056 AGAGGTTACTTCTCTCCATACAGG 58.795 45.833 0.00 0.00 36.99 4.00
2441 2517 5.685520 AATGGAAGAGGTTACTTCTCTCC 57.314 43.478 14.11 14.11 43.76 3.71
2442 2518 7.289084 AGGATAATGGAAGAGGTTACTTCTCTC 59.711 40.741 0.00 0.00 43.76 3.20
2446 2522 7.125792 TGAGGATAATGGAAGAGGTTACTTC 57.874 40.000 0.00 0.00 43.60 3.01
2448 2524 6.903534 TCTTGAGGATAATGGAAGAGGTTACT 59.096 38.462 0.00 0.00 0.00 2.24
2449 2525 7.125792 TCTTGAGGATAATGGAAGAGGTTAC 57.874 40.000 0.00 0.00 0.00 2.50
2450 2526 7.749377 TTCTTGAGGATAATGGAAGAGGTTA 57.251 36.000 0.00 0.00 0.00 2.85
2452 2528 6.445139 TCTTTCTTGAGGATAATGGAAGAGGT 59.555 38.462 0.00 0.00 0.00 3.85
2454 2530 8.798859 TTTCTTTCTTGAGGATAATGGAAGAG 57.201 34.615 0.00 0.00 0.00 2.85
2455 2531 8.605947 TCTTTCTTTCTTGAGGATAATGGAAGA 58.394 33.333 0.00 0.00 0.00 2.87
2456 2532 8.798859 TCTTTCTTTCTTGAGGATAATGGAAG 57.201 34.615 0.00 0.00 0.00 3.46
2459 2546 9.631452 GTTTTCTTTCTTTCTTGAGGATAATGG 57.369 33.333 0.00 0.00 0.00 3.16
2465 2552 6.486993 GCTAGGTTTTCTTTCTTTCTTGAGGA 59.513 38.462 0.00 0.00 0.00 3.71
2468 2555 6.601613 TGTGCTAGGTTTTCTTTCTTTCTTGA 59.398 34.615 0.00 0.00 0.00 3.02
2472 2559 5.009110 AGCTGTGCTAGGTTTTCTTTCTTTC 59.991 40.000 0.00 0.00 36.99 2.62
2475 2562 4.068599 GAGCTGTGCTAGGTTTTCTTTCT 58.931 43.478 0.00 0.00 39.88 2.52
2503 2591 0.097674 GAGTAATGCTTGTGGCTGCG 59.902 55.000 0.00 0.00 42.39 5.18
2509 2597 8.186163 ACATTAACATGATGAGTAATGCTTGTG 58.814 33.333 21.93 9.15 34.92 3.33
2510 2598 8.186163 CACATTAACATGATGAGTAATGCTTGT 58.814 33.333 21.93 10.27 34.92 3.16
2525 2648 8.865978 CACCTGAAATTGAATCACATTAACATG 58.134 33.333 0.00 0.00 36.34 3.21
2526 2649 8.036575 CCACCTGAAATTGAATCACATTAACAT 58.963 33.333 0.00 0.00 0.00 2.71
2530 2653 6.128035 CGACCACCTGAAATTGAATCACATTA 60.128 38.462 0.00 0.00 0.00 1.90
2531 2654 5.335897 CGACCACCTGAAATTGAATCACATT 60.336 40.000 0.00 0.00 0.00 2.71
2532 2655 4.156556 CGACCACCTGAAATTGAATCACAT 59.843 41.667 0.00 0.00 0.00 3.21
2533 2656 3.501828 CGACCACCTGAAATTGAATCACA 59.498 43.478 0.00 0.00 0.00 3.58
2534 2657 3.751175 TCGACCACCTGAAATTGAATCAC 59.249 43.478 0.00 0.00 0.00 3.06
2535 2658 4.014569 TCGACCACCTGAAATTGAATCA 57.985 40.909 0.00 0.00 0.00 2.57
2536 2659 4.635765 TGATCGACCACCTGAAATTGAATC 59.364 41.667 0.00 0.00 0.00 2.52
2538 2661 4.014569 TGATCGACCACCTGAAATTGAA 57.985 40.909 0.00 0.00 0.00 2.69
2540 2663 3.001634 CGATGATCGACCACCTGAAATTG 59.998 47.826 9.62 0.00 43.74 2.32
2541 2664 3.198068 CGATGATCGACCACCTGAAATT 58.802 45.455 9.62 0.00 43.74 1.82
2542 2665 2.826428 CGATGATCGACCACCTGAAAT 58.174 47.619 9.62 0.00 43.74 2.17
2543 2666 1.739035 GCGATGATCGACCACCTGAAA 60.739 52.381 20.25 0.00 43.74 2.69
2544 2667 0.179111 GCGATGATCGACCACCTGAA 60.179 55.000 20.25 0.00 43.74 3.02
2585 2708 5.934043 CCAGTAGTTCTTGATGTCATTGTCA 59.066 40.000 0.00 0.00 0.00 3.58
2591 2714 5.297547 GTGTTCCAGTAGTTCTTGATGTCA 58.702 41.667 0.00 0.00 0.00 3.58
2771 2894 3.791586 GACTGCTGGAGGAGGGCC 61.792 72.222 0.00 0.00 37.85 5.80
2798 2921 3.325716 GGTCCTGTGGTTGTAAGGTTAGA 59.674 47.826 0.00 0.00 32.59 2.10
2805 2928 3.039743 TGTAGTGGTCCTGTGGTTGTAA 58.960 45.455 0.00 0.00 0.00 2.41
2852 2975 1.529226 CGTTGTTGTTAGCCATGGGA 58.471 50.000 15.13 0.00 0.00 4.37
2860 2983 1.495951 GAGGCGCCGTTGTTGTTAG 59.504 57.895 23.20 0.00 0.00 2.34
2861 2984 1.962306 GGAGGCGCCGTTGTTGTTA 60.962 57.895 23.20 0.00 0.00 2.41
3098 3224 2.232974 GGCGCCGTACATTCCGTAC 61.233 63.158 12.58 0.00 46.03 3.67
3394 3530 6.881065 ACCTTCTTCAATTCGATCTTGATTGA 59.119 34.615 10.64 8.21 32.94 2.57
3395 3531 6.965500 CACCTTCTTCAATTCGATCTTGATTG 59.035 38.462 10.64 6.19 32.94 2.67
3396 3532 6.656693 ACACCTTCTTCAATTCGATCTTGATT 59.343 34.615 10.64 0.00 32.94 2.57
3397 3533 6.093219 CACACCTTCTTCAATTCGATCTTGAT 59.907 38.462 10.64 0.00 32.94 2.57
3398 3534 5.409520 CACACCTTCTTCAATTCGATCTTGA 59.590 40.000 6.80 6.80 0.00 3.02
3399 3535 5.180117 ACACACCTTCTTCAATTCGATCTTG 59.820 40.000 2.63 2.63 0.00 3.02
3400 3536 5.180117 CACACACCTTCTTCAATTCGATCTT 59.820 40.000 0.00 0.00 0.00 2.40
3401 3537 4.692625 CACACACCTTCTTCAATTCGATCT 59.307 41.667 0.00 0.00 0.00 2.75
3402 3538 4.452455 ACACACACCTTCTTCAATTCGATC 59.548 41.667 0.00 0.00 0.00 3.69
3403 3539 4.389374 ACACACACCTTCTTCAATTCGAT 58.611 39.130 0.00 0.00 0.00 3.59
3487 3623 5.049954 GCGTTTTAATCCACTTCACTACACA 60.050 40.000 0.00 0.00 0.00 3.72
3591 3727 4.774124 GAGAATCTTGATCCCATGTCACA 58.226 43.478 0.00 0.00 0.00 3.58
3625 3768 6.676558 AGAGAGATTGAGAAAGGAGAGAGAT 58.323 40.000 0.00 0.00 0.00 2.75
3636 3780 6.210385 ACAGCAAGTAAGAGAGAGATTGAGAA 59.790 38.462 0.00 0.00 0.00 2.87
3641 3785 7.039363 ACAGTAACAGCAAGTAAGAGAGAGATT 60.039 37.037 0.00 0.00 0.00 2.40
3642 3786 6.435904 ACAGTAACAGCAAGTAAGAGAGAGAT 59.564 38.462 0.00 0.00 0.00 2.75
3683 3831 4.085009 TGCTGACAAAGATGAGAGAGAGA 58.915 43.478 0.00 0.00 0.00 3.10
3684 3832 4.453177 TGCTGACAAAGATGAGAGAGAG 57.547 45.455 0.00 0.00 0.00 3.20
3951 4119 2.480073 GCAGCATCAAACAAGTGTGTGT 60.480 45.455 1.62 0.00 38.27 3.72
3952 4120 2.121786 GCAGCATCAAACAAGTGTGTG 58.878 47.619 0.00 0.00 38.27 3.82
3953 4121 1.750206 TGCAGCATCAAACAAGTGTGT 59.250 42.857 0.00 0.00 40.75 3.72
3954 4122 2.495409 TGCAGCATCAAACAAGTGTG 57.505 45.000 0.00 0.00 0.00 3.82
3955 4123 3.386486 CATTGCAGCATCAAACAAGTGT 58.614 40.909 0.00 0.00 0.00 3.55
3957 4125 2.224090 TGCATTGCAGCATCAAACAAGT 60.224 40.909 7.38 0.00 40.11 3.16
3958 4126 2.409012 TGCATTGCAGCATCAAACAAG 58.591 42.857 7.38 0.00 40.11 3.16
3959 4127 2.528041 TGCATTGCAGCATCAAACAA 57.472 40.000 7.38 0.00 40.11 2.83
3960 4128 2.528041 TTGCATTGCAGCATCAAACA 57.472 40.000 11.76 0.00 45.19 2.83
3961 4129 2.475519 GCATTGCATTGCAGCATCAAAC 60.476 45.455 24.71 0.00 45.19 2.93
3962 4130 1.735018 GCATTGCATTGCAGCATCAAA 59.265 42.857 24.71 0.00 45.19 2.69
4091 4259 4.981054 AGACGAACGGTAAGAGAAGAAAAC 59.019 41.667 0.00 0.00 0.00 2.43
4102 4270 1.612950 TGGCTACAAGACGAACGGTAA 59.387 47.619 0.00 0.00 0.00 2.85
4158 4326 5.864986 ACACTGTGAAACGAAACAAGTAAG 58.135 37.500 15.86 0.00 42.39 2.34
4177 4345 5.481105 CATATTCATGGCCAAACAAACACT 58.519 37.500 10.96 0.00 0.00 3.55
4216 4384 5.825679 TCTAGGTCAGAGAAGATGCTAGAAC 59.174 44.000 0.00 0.00 0.00 3.01
4217 4385 5.825679 GTCTAGGTCAGAGAAGATGCTAGAA 59.174 44.000 0.00 0.00 32.51 2.10
4225 4393 6.672266 AAAACATGTCTAGGTCAGAGAAGA 57.328 37.500 0.00 0.00 32.51 2.87
4249 4417 9.866655 TTATATTTAGGAACGGAGGTACTAGAA 57.133 33.333 0.00 0.00 41.55 2.10
4254 4422 8.175925 AGACTTATATTTAGGAACGGAGGTAC 57.824 38.462 0.00 0.00 0.00 3.34
4255 4423 8.773033 AAGACTTATATTTAGGAACGGAGGTA 57.227 34.615 0.00 0.00 0.00 3.08
4256 4424 7.672122 AAGACTTATATTTAGGAACGGAGGT 57.328 36.000 0.00 0.00 0.00 3.85
4257 4425 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
4284 4452 8.307483 CCGTATGTAGTTCATAATGGAATCTCT 58.693 37.037 4.25 0.00 40.21 3.10
4285 4453 8.304596 TCCGTATGTAGTTCATAATGGAATCTC 58.695 37.037 8.63 0.00 40.10 2.75
4286 4454 8.190326 TCCGTATGTAGTTCATAATGGAATCT 57.810 34.615 8.63 0.00 40.10 2.40
4287 4455 7.063544 GCTCCGTATGTAGTTCATAATGGAATC 59.936 40.741 11.01 5.31 41.27 2.52
4288 4456 6.874134 GCTCCGTATGTAGTTCATAATGGAAT 59.126 38.462 11.01 0.00 41.27 3.01
4289 4457 6.183360 TGCTCCGTATGTAGTTCATAATGGAA 60.183 38.462 11.01 0.00 41.27 3.53
4290 4458 5.303333 TGCTCCGTATGTAGTTCATAATGGA 59.697 40.000 9.98 9.98 40.44 3.41
4291 4459 5.538118 TGCTCCGTATGTAGTTCATAATGG 58.462 41.667 3.99 3.99 40.21 3.16
4292 4460 6.923508 TCTTGCTCCGTATGTAGTTCATAATG 59.076 38.462 0.00 0.00 40.21 1.90
4293 4461 7.050970 TCTTGCTCCGTATGTAGTTCATAAT 57.949 36.000 0.00 0.00 40.21 1.28
4294 4462 6.459670 TCTTGCTCCGTATGTAGTTCATAA 57.540 37.500 0.00 0.00 40.21 1.90
4295 4463 6.264518 TCATCTTGCTCCGTATGTAGTTCATA 59.735 38.462 0.00 0.00 37.91 2.15
4296 4464 5.069119 TCATCTTGCTCCGTATGTAGTTCAT 59.931 40.000 0.00 0.00 40.25 2.57
4297 4465 4.401202 TCATCTTGCTCCGTATGTAGTTCA 59.599 41.667 0.00 0.00 0.00 3.18
4298 4466 4.933330 TCATCTTGCTCCGTATGTAGTTC 58.067 43.478 0.00 0.00 0.00 3.01
4299 4467 4.402793 ACTCATCTTGCTCCGTATGTAGTT 59.597 41.667 0.00 0.00 0.00 2.24
4300 4468 3.954904 ACTCATCTTGCTCCGTATGTAGT 59.045 43.478 0.00 0.00 0.00 2.73
4301 4469 4.036852 TCACTCATCTTGCTCCGTATGTAG 59.963 45.833 0.00 0.00 0.00 2.74
4302 4470 3.951680 TCACTCATCTTGCTCCGTATGTA 59.048 43.478 0.00 0.00 0.00 2.29
4303 4471 2.760650 TCACTCATCTTGCTCCGTATGT 59.239 45.455 0.00 0.00 0.00 2.29
4304 4472 3.443099 TCACTCATCTTGCTCCGTATG 57.557 47.619 0.00 0.00 0.00 2.39
4305 4473 4.343526 AGATTCACTCATCTTGCTCCGTAT 59.656 41.667 0.00 0.00 28.19 3.06
4306 4474 3.701542 AGATTCACTCATCTTGCTCCGTA 59.298 43.478 0.00 0.00 28.19 4.02
4307 4475 2.499289 AGATTCACTCATCTTGCTCCGT 59.501 45.455 0.00 0.00 28.19 4.69
4308 4476 3.176552 AGATTCACTCATCTTGCTCCG 57.823 47.619 0.00 0.00 28.19 4.63
4309 4477 4.808364 GTGTAGATTCACTCATCTTGCTCC 59.192 45.833 0.00 0.00 35.08 4.70
4310 4478 5.659463 AGTGTAGATTCACTCATCTTGCTC 58.341 41.667 0.00 0.00 44.07 4.26
4311 4479 5.674052 AGTGTAGATTCACTCATCTTGCT 57.326 39.130 0.00 0.00 44.07 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.