Multiple sequence alignment - TraesCS2B01G080500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G080500 chr2B 100.000 3464 0 0 1 3464 44943802 44940339 0.000000e+00 6397.0
1 TraesCS2B01G080500 chr2B 94.859 1770 72 10 738 2506 45608062 45609813 0.000000e+00 2747.0
2 TraesCS2B01G080500 chr2B 93.843 1819 95 5 911 2724 45642250 45640444 0.000000e+00 2723.0
3 TraesCS2B01G080500 chr2B 90.909 715 39 7 2720 3422 45640415 45639715 0.000000e+00 937.0
4 TraesCS2B01G080500 chr2B 89.628 376 35 2 1 372 786252834 786253209 3.130000e-130 475.0
5 TraesCS2B01G080500 chr2B 90.045 221 19 3 3004 3223 45610358 45610576 2.040000e-72 283.0
6 TraesCS2B01G080500 chr2B 86.667 255 32 2 2970 3223 45535276 45535023 7.320000e-72 281.0
7 TraesCS2B01G080500 chr2B 85.659 258 35 2 2967 3223 45040366 45040622 1.580000e-68 270.0
8 TraesCS2B01G080500 chr2B 87.850 214 24 1 1016 1229 45607551 45607762 2.060000e-62 250.0
9 TraesCS2B01G080500 chr2B 88.889 207 16 4 469 668 781583761 781583555 7.420000e-62 248.0
10 TraesCS2B01G080500 chr2B 87.981 208 18 5 466 666 746354979 746355186 4.470000e-59 239.0
11 TraesCS2B01G080500 chr2B 90.909 176 8 4 749 918 45643393 45643220 2.690000e-56 230.0
12 TraesCS2B01G080500 chr2B 94.828 116 6 0 349 464 206395360 206395475 7.640000e-42 182.0
13 TraesCS2B01G080500 chr2B 90.517 116 11 0 349 464 206411394 206411509 1.660000e-33 154.0
14 TraesCS2B01G080500 chr2B 92.000 75 6 0 678 752 45645121 45645047 4.730000e-19 106.0
15 TraesCS2B01G080500 chr2B 100.000 28 0 0 2695 2722 550116303 550116330 6.000000e-03 52.8
16 TraesCS2B01G080500 chr2D 92.234 1880 107 15 738 2608 28407460 28409309 0.000000e+00 2627.0
17 TraesCS2B01G080500 chr2D 90.515 738 55 9 772 1500 28048465 28049196 0.000000e+00 961.0
18 TraesCS2B01G080500 chr2D 89.507 629 33 7 674 1301 28099222 28099818 0.000000e+00 765.0
19 TraesCS2B01G080500 chr2D 86.713 429 31 11 2180 2608 28052157 28052559 1.470000e-123 453.0
20 TraesCS2B01G080500 chr2D 89.883 257 26 0 2967 3223 28411514 28411770 7.170000e-87 331.0
21 TraesCS2B01G080500 chr2D 84.013 319 30 6 915 1229 28364482 28364783 1.570000e-73 287.0
22 TraesCS2B01G080500 chr2D 86.220 254 33 2 2970 3222 27957773 27957521 1.220000e-69 274.0
23 TraesCS2B01G080500 chr2D 85.659 258 35 2 2967 3223 28008255 28008511 1.580000e-68 270.0
24 TraesCS2B01G080500 chr2D 86.730 211 22 5 1049 1259 28324982 28325186 2.690000e-56 230.0
25 TraesCS2B01G080500 chr2D 78.400 375 63 11 2060 2430 613326950 613327310 9.670000e-56 228.0
26 TraesCS2B01G080500 chr2D 95.122 41 2 0 680 720 28048409 28048449 8.020000e-07 65.8
27 TraesCS2B01G080500 chr2D 95.122 41 2 0 680 720 28407320 28407360 8.020000e-07 65.8
28 TraesCS2B01G080500 chr2D 100.000 28 0 0 2696 2723 616957387 616957414 6.000000e-03 52.8
29 TraesCS2B01G080500 chr2A 88.872 1986 146 39 738 2678 30222631 30224586 0.000000e+00 2374.0
30 TraesCS2B01G080500 chr2A 92.208 462 34 2 4 464 260865948 260865488 0.000000e+00 652.0
31 TraesCS2B01G080500 chr2A 93.333 270 17 1 2967 3236 30224966 30225234 6.970000e-107 398.0
32 TraesCS2B01G080500 chr2A 91.188 261 11 4 2713 2963 30224677 30224935 9.200000e-91 344.0
33 TraesCS2B01G080500 chr2A 86.047 258 34 2 2967 3223 30187097 30187353 3.410000e-70 276.0
34 TraesCS2B01G080500 chr2A 90.047 211 14 6 463 666 757536911 757537121 2.050000e-67 267.0
35 TraesCS2B01G080500 chr2A 88.462 208 17 4 466 666 456290717 456290924 9.600000e-61 244.0
36 TraesCS2B01G080500 chr5D 78.464 1458 253 40 1023 2430 464324750 464326196 0.000000e+00 896.0
37 TraesCS2B01G080500 chr5D 96.774 31 1 0 2695 2725 15957116 15957086 6.000000e-03 52.8
38 TraesCS2B01G080500 chr5D 100.000 28 0 0 2695 2722 489803869 489803896 6.000000e-03 52.8
39 TraesCS2B01G080500 chr5B 77.923 1454 268 35 1023 2430 571480055 571481501 0.000000e+00 857.0
40 TraesCS2B01G080500 chr5B 88.462 208 17 5 466 666 622203038 622202831 9.600000e-61 244.0
41 TraesCS2B01G080500 chr5B 100.000 28 0 0 2695 2722 603977909 603977936 6.000000e-03 52.8
42 TraesCS2B01G080500 chr5A 77.661 1428 259 40 1028 2430 584716389 584717781 0.000000e+00 815.0
43 TraesCS2B01G080500 chr7B 94.624 465 24 1 1 464 394967050 394967514 0.000000e+00 719.0
44 TraesCS2B01G080500 chr7B 93.333 465 30 1 1 464 408643315 408643779 0.000000e+00 686.0
45 TraesCS2B01G080500 chr7B 93.290 462 30 1 4 464 12023601 12023140 0.000000e+00 680.0
46 TraesCS2B01G080500 chr4A 91.489 470 31 2 4 464 252213200 252212731 3.770000e-179 638.0
47 TraesCS2B01G080500 chr4A 92.037 427 32 2 1 425 36780290 36780716 1.780000e-167 599.0
48 TraesCS2B01G080500 chr4A 100.000 28 0 0 2695 2722 701306520 701306493 6.000000e-03 52.8
49 TraesCS2B01G080500 chr7A 91.064 470 33 2 4 464 594509749 594509280 8.160000e-176 627.0
50 TraesCS2B01G080500 chr3B 92.233 412 31 1 1 411 553489396 553489807 1.790000e-162 582.0
51 TraesCS2B01G080500 chr3B 92.241 116 9 0 349 464 512170452 512170567 7.690000e-37 165.0
52 TraesCS2B01G080500 chr3B 100.000 29 0 0 2694 2722 598993499 598993527 2.000000e-03 54.7
53 TraesCS2B01G080500 chr7D 91.223 319 27 1 1 319 190145833 190146150 1.910000e-117 433.0
54 TraesCS2B01G080500 chr1B 89.423 208 15 5 466 666 504951638 504951845 4.440000e-64 255.0
55 TraesCS2B01G080500 chr6D 84.959 246 34 3 3220 3464 91829018 91828775 2.670000e-61 246.0
56 TraesCS2B01G080500 chrUn 88.462 208 17 6 466 666 138346159 138345952 9.600000e-61 244.0
57 TraesCS2B01G080500 chrUn 88.462 208 17 6 466 666 138415873 138415666 9.600000e-61 244.0
58 TraesCS2B01G080500 chrUn 88.462 208 17 6 466 666 312018947 312018740 9.600000e-61 244.0
59 TraesCS2B01G080500 chr1D 100.000 28 0 0 2698 2725 4645170 4645197 6.000000e-03 52.8
60 TraesCS2B01G080500 chr1A 96.774 31 1 0 2695 2725 584802980 584802950 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G080500 chr2B 44940339 44943802 3463 True 6397.000000 6397 100.000000 1 3464 1 chr2B.!!$R1 3463
1 TraesCS2B01G080500 chr2B 45607551 45610576 3025 False 1093.333333 2747 90.918000 738 3223 3 chr2B.!!$F7 2485
2 TraesCS2B01G080500 chr2B 45639715 45645121 5406 True 999.000000 2723 91.915250 678 3422 4 chr2B.!!$R4 2744
3 TraesCS2B01G080500 chr2D 28407320 28411770 4450 False 1007.933333 2627 92.413000 680 3223 3 chr2D.!!$F8 2543
4 TraesCS2B01G080500 chr2D 28099222 28099818 596 False 765.000000 765 89.507000 674 1301 1 chr2D.!!$F2 627
5 TraesCS2B01G080500 chr2D 28048409 28052559 4150 False 493.266667 961 90.783333 680 2608 3 chr2D.!!$F7 1928
6 TraesCS2B01G080500 chr2A 30222631 30225234 2603 False 1038.666667 2374 91.131000 738 3236 3 chr2A.!!$F4 2498
7 TraesCS2B01G080500 chr5D 464324750 464326196 1446 False 896.000000 896 78.464000 1023 2430 1 chr5D.!!$F1 1407
8 TraesCS2B01G080500 chr5B 571480055 571481501 1446 False 857.000000 857 77.923000 1023 2430 1 chr5B.!!$F1 1407
9 TraesCS2B01G080500 chr5A 584716389 584717781 1392 False 815.000000 815 77.661000 1028 2430 1 chr5A.!!$F1 1402

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 566 0.033503 CGGCCCCACCCTCTTAAAAT 60.034 55.0 0.0 0.0 33.26 1.82 F
640 641 0.034059 GGAGTACGGATGGGAGCATG 59.966 60.0 0.0 0.0 0.00 4.06 F
641 642 0.034059 GAGTACGGATGGGAGCATGG 59.966 60.0 0.0 0.0 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2279 7262 0.374758 CATGAAGGTCGTCAATGCCG 59.625 55.000 0.00 0.0 0.00 5.69 R
2352 7335 1.743623 CACCGCGGCATGAACCTTA 60.744 57.895 28.58 0.0 0.00 2.69 R
2508 7497 2.567169 AGACTGACCGACCATCATTCAA 59.433 45.455 0.00 0.0 30.31 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.426651 TGTAGGCATAGGCTCGACC 58.573 57.895 0.00 0.00 39.70 4.79
19 20 1.286260 GTAGGCATAGGCTCGACCG 59.714 63.158 0.00 0.00 46.52 4.79
20 21 1.149854 TAGGCATAGGCTCGACCGA 59.850 57.895 0.00 0.00 46.52 4.69
22 23 2.353607 GCATAGGCTCGACCGACG 60.354 66.667 0.00 0.00 46.52 5.12
32 33 3.786586 GACCGACGACGCGAGACT 61.787 66.667 15.93 0.00 38.29 3.24
34 35 4.517703 CCGACGACGCGAGACTCC 62.518 72.222 15.93 0.00 38.29 3.85
35 36 3.488978 CGACGACGCGAGACTCCT 61.489 66.667 15.93 0.00 0.00 3.69
36 37 2.400402 GACGACGCGAGACTCCTC 59.600 66.667 15.93 0.00 36.08 3.71
37 38 3.098377 GACGACGCGAGACTCCTCC 62.098 68.421 15.93 0.00 36.04 4.30
38 39 3.878519 CGACGCGAGACTCCTCCC 61.879 72.222 15.93 0.00 36.04 4.30
39 40 2.438795 GACGCGAGACTCCTCCCT 60.439 66.667 15.93 0.00 36.04 4.20
40 41 2.035940 ACGCGAGACTCCTCCCTT 59.964 61.111 15.93 0.00 36.04 3.95
41 42 1.596895 GACGCGAGACTCCTCCCTTT 61.597 60.000 15.93 0.00 36.04 3.11
42 43 1.139947 CGCGAGACTCCTCCCTTTC 59.860 63.158 0.00 0.00 36.04 2.62
43 44 1.518302 GCGAGACTCCTCCCTTTCC 59.482 63.158 0.00 0.00 36.04 3.13
44 45 1.810532 CGAGACTCCTCCCTTTCCG 59.189 63.158 0.00 0.00 36.04 4.30
45 46 1.518302 GAGACTCCTCCCTTTCCGC 59.482 63.158 0.00 0.00 33.30 5.54
47 48 0.973496 AGACTCCTCCCTTTCCGCTC 60.973 60.000 0.00 0.00 0.00 5.03
48 49 1.962321 GACTCCTCCCTTTCCGCTCC 61.962 65.000 0.00 0.00 0.00 4.70
49 50 3.075005 TCCTCCCTTTCCGCTCCG 61.075 66.667 0.00 0.00 0.00 4.63
95 96 4.516195 GAGCTTCTCCGCCCGGTC 62.516 72.222 6.61 0.00 36.47 4.79
98 99 2.434359 CTTCTCCGCCCGGTCAAC 60.434 66.667 6.61 0.00 36.47 3.18
99 100 2.920912 TTCTCCGCCCGGTCAACT 60.921 61.111 6.61 0.00 36.47 3.16
129 130 3.625897 CCTCCACGCCACAGGACA 61.626 66.667 0.00 0.00 0.00 4.02
130 131 2.665000 CTCCACGCCACAGGACAT 59.335 61.111 0.00 0.00 0.00 3.06
131 132 1.448540 CTCCACGCCACAGGACATC 60.449 63.158 0.00 0.00 0.00 3.06
132 133 2.436646 CCACGCCACAGGACATCC 60.437 66.667 0.00 0.00 0.00 3.51
133 134 2.436646 CACGCCACAGGACATCCC 60.437 66.667 0.00 0.00 36.42 3.85
136 137 2.187946 GCCACAGGACATCCCGAG 59.812 66.667 0.00 0.00 40.87 4.63
137 138 2.187946 CCACAGGACATCCCGAGC 59.812 66.667 0.00 0.00 40.87 5.03
139 140 3.461773 ACAGGACATCCCGAGCCG 61.462 66.667 0.00 0.00 40.87 5.52
140 141 3.147595 CAGGACATCCCGAGCCGA 61.148 66.667 0.00 0.00 40.87 5.54
141 142 2.123251 AGGACATCCCGAGCCGAT 60.123 61.111 0.00 0.00 40.87 4.18
155 156 4.237809 CGATCGCCTGCTCGACGA 62.238 66.667 0.26 0.00 41.62 4.20
157 158 4.538283 ATCGCCTGCTCGACGACG 62.538 66.667 0.00 0.00 41.62 5.12
161 162 4.039357 CCTGCTCGACGACGGTGT 62.039 66.667 7.55 0.00 40.21 4.16
162 163 2.502080 CTGCTCGACGACGGTGTC 60.502 66.667 7.55 0.00 40.21 3.67
163 164 3.948086 CTGCTCGACGACGGTGTCC 62.948 68.421 7.55 0.00 40.21 4.02
175 176 3.986006 GTGTCCGCACCGTGGAGA 61.986 66.667 0.00 0.00 43.30 3.71
176 177 3.986006 TGTCCGCACCGTGGAGAC 61.986 66.667 0.00 2.35 43.30 3.36
180 181 2.503375 CGCACCGTGGAGACGTAC 60.503 66.667 0.00 0.00 44.54 3.67
181 182 2.503375 GCACCGTGGAGACGTACG 60.503 66.667 15.01 15.01 44.54 3.67
186 187 2.382746 CGTGGAGACGTACGACCGA 61.383 63.158 24.41 4.63 42.54 4.69
187 188 1.133458 GTGGAGACGTACGACCGAC 59.867 63.158 24.41 12.88 0.00 4.79
188 189 2.034879 TGGAGACGTACGACCGACC 61.035 63.158 24.41 18.38 0.00 4.79
189 190 2.397252 GAGACGTACGACCGACCG 59.603 66.667 24.41 0.00 0.00 4.79
194 195 3.815396 GTACGACCGACCGGGGAC 61.815 72.222 13.43 0.00 41.60 4.46
206 207 3.552219 GGGGACGGGAGATTCCTC 58.448 66.667 0.00 0.00 36.57 3.71
215 216 3.092851 GAGATTCCTCCCTTGCTGC 57.907 57.895 0.00 0.00 33.30 5.25
217 218 0.545646 AGATTCCTCCCTTGCTGCTC 59.454 55.000 0.00 0.00 0.00 4.26
218 219 0.813210 GATTCCTCCCTTGCTGCTCG 60.813 60.000 0.00 0.00 0.00 5.03
221 222 4.399395 CTCCCTTGCTGCTCGGCA 62.399 66.667 0.00 0.00 40.74 5.69
234 235 3.588277 TCGGCAGAGAGACACAAAC 57.412 52.632 0.00 0.00 0.00 2.93
235 236 0.033504 TCGGCAGAGAGACACAAACC 59.966 55.000 0.00 0.00 0.00 3.27
236 237 0.034059 CGGCAGAGAGACACAAACCT 59.966 55.000 0.00 0.00 0.00 3.50
237 238 1.517242 GGCAGAGAGACACAAACCTG 58.483 55.000 0.00 0.00 0.00 4.00
238 239 0.871057 GCAGAGAGACACAAACCTGC 59.129 55.000 0.00 0.00 39.88 4.85
239 240 1.517242 CAGAGAGACACAAACCTGCC 58.483 55.000 0.00 0.00 0.00 4.85
240 241 0.398318 AGAGAGACACAAACCTGCCC 59.602 55.000 0.00 0.00 0.00 5.36
241 242 0.951040 GAGAGACACAAACCTGCCCG 60.951 60.000 0.00 0.00 0.00 6.13
242 243 1.966451 GAGACACAAACCTGCCCGG 60.966 63.158 0.00 0.00 39.35 5.73
243 244 3.670377 GACACAAACCTGCCCGGC 61.670 66.667 1.04 1.04 35.61 6.13
244 245 4.514585 ACACAAACCTGCCCGGCA 62.515 61.111 12.67 12.67 36.92 5.69
305 306 3.214123 CACGACGCGGGGATCCTA 61.214 66.667 12.47 0.00 0.00 2.94
306 307 3.214845 ACGACGCGGGGATCCTAC 61.215 66.667 12.47 4.25 0.00 3.18
307 308 4.323843 CGACGCGGGGATCCTACG 62.324 72.222 20.29 20.29 36.66 3.51
308 309 3.214845 GACGCGGGGATCCTACGT 61.215 66.667 21.54 21.54 43.14 3.57
309 310 3.191637 GACGCGGGGATCCTACGTC 62.192 68.421 26.83 26.83 45.74 4.34
310 311 4.323843 CGCGGGGATCCTACGTCG 62.324 72.222 23.53 21.99 0.00 5.12
311 312 3.974757 GCGGGGATCCTACGTCGG 61.975 72.222 23.53 0.00 0.00 4.79
312 313 3.292936 CGGGGATCCTACGTCGGG 61.293 72.222 12.58 3.68 0.00 5.14
313 314 3.613689 GGGGATCCTACGTCGGGC 61.614 72.222 12.58 0.00 0.00 6.13
314 315 2.521224 GGGATCCTACGTCGGGCT 60.521 66.667 12.58 0.00 0.00 5.19
315 316 2.728817 GGATCCTACGTCGGGCTG 59.271 66.667 3.84 0.00 0.00 4.85
316 317 2.027751 GATCCTACGTCGGGCTGC 59.972 66.667 6.24 0.00 0.00 5.25
317 318 3.501458 GATCCTACGTCGGGCTGCC 62.501 68.421 11.05 11.05 0.00 4.85
318 319 4.753662 TCCTACGTCGGGCTGCCT 62.754 66.667 19.68 0.00 0.00 4.75
319 320 4.514577 CCTACGTCGGGCTGCCTG 62.515 72.222 21.69 21.69 0.00 4.85
320 321 3.760035 CTACGTCGGGCTGCCTGT 61.760 66.667 25.92 17.12 0.00 4.00
321 322 3.989698 CTACGTCGGGCTGCCTGTG 62.990 68.421 25.92 20.94 0.00 3.66
326 327 4.659172 CGGGCTGCCTGTGGGAAA 62.659 66.667 19.55 0.00 33.58 3.13
327 328 2.203625 GGGCTGCCTGTGGGAAAA 60.204 61.111 19.68 0.00 33.58 2.29
328 329 2.278330 GGGCTGCCTGTGGGAAAAG 61.278 63.158 19.68 0.00 33.58 2.27
329 330 2.278330 GGCTGCCTGTGGGAAAAGG 61.278 63.158 12.43 0.00 36.58 3.11
330 331 1.228552 GCTGCCTGTGGGAAAAGGA 60.229 57.895 0.00 0.00 35.40 3.36
331 332 0.827507 GCTGCCTGTGGGAAAAGGAA 60.828 55.000 0.00 0.00 35.40 3.36
332 333 1.703411 CTGCCTGTGGGAAAAGGAAA 58.297 50.000 0.00 0.00 35.40 3.13
333 334 1.341209 CTGCCTGTGGGAAAAGGAAAC 59.659 52.381 0.00 0.00 35.40 2.78
334 335 1.342474 TGCCTGTGGGAAAAGGAAACA 60.342 47.619 0.00 0.00 35.40 2.83
335 336 1.068588 GCCTGTGGGAAAAGGAAACAC 59.931 52.381 0.00 0.00 35.40 3.32
336 337 1.686587 CCTGTGGGAAAAGGAAACACC 59.313 52.381 0.00 0.00 35.40 4.16
337 338 1.686587 CTGTGGGAAAAGGAAACACCC 59.313 52.381 0.00 0.00 40.05 4.61
338 339 1.007238 TGTGGGAAAAGGAAACACCCA 59.993 47.619 0.00 0.00 46.74 4.51
339 340 2.785357 TGGGAAAAGGAAACACCCAT 57.215 45.000 0.00 0.00 44.50 4.00
340 341 2.604139 TGGGAAAAGGAAACACCCATC 58.396 47.619 0.00 0.00 44.50 3.51
341 342 1.544246 GGGAAAAGGAAACACCCATCG 59.456 52.381 0.00 0.00 40.20 3.84
342 343 1.067846 GGAAAAGGAAACACCCATCGC 60.068 52.381 0.00 0.00 40.05 4.58
343 344 1.611491 GAAAAGGAAACACCCATCGCA 59.389 47.619 0.00 0.00 40.05 5.10
344 345 1.923356 AAAGGAAACACCCATCGCAT 58.077 45.000 0.00 0.00 40.05 4.73
345 346 1.176527 AAGGAAACACCCATCGCATG 58.823 50.000 0.00 0.00 40.05 4.06
346 347 1.139520 GGAAACACCCATCGCATGC 59.860 57.895 7.91 7.91 0.00 4.06
347 348 1.594194 GGAAACACCCATCGCATGCA 61.594 55.000 19.57 5.34 0.00 3.96
348 349 0.243365 GAAACACCCATCGCATGCAA 59.757 50.000 19.57 0.00 0.00 4.08
349 350 0.896923 AAACACCCATCGCATGCAAT 59.103 45.000 19.57 0.41 0.00 3.56
363 364 4.258935 CATGCAATGCTTCAATTTCAGC 57.741 40.909 6.82 0.00 37.62 4.26
364 365 3.671008 TGCAATGCTTCAATTTCAGCT 57.329 38.095 6.82 0.00 36.92 4.24
365 366 3.997762 TGCAATGCTTCAATTTCAGCTT 58.002 36.364 6.82 0.00 36.92 3.74
366 367 5.136816 TGCAATGCTTCAATTTCAGCTTA 57.863 34.783 6.82 0.00 36.92 3.09
367 368 5.539979 TGCAATGCTTCAATTTCAGCTTAA 58.460 33.333 6.82 0.00 36.92 1.85
368 369 6.167685 TGCAATGCTTCAATTTCAGCTTAAT 58.832 32.000 6.82 0.00 36.92 1.40
369 370 6.651643 TGCAATGCTTCAATTTCAGCTTAATT 59.348 30.769 6.82 0.00 36.92 1.40
370 371 7.818446 TGCAATGCTTCAATTTCAGCTTAATTA 59.182 29.630 6.82 0.00 36.92 1.40
371 372 8.325997 GCAATGCTTCAATTTCAGCTTAATTAG 58.674 33.333 0.00 1.61 36.92 1.73
372 373 9.362539 CAATGCTTCAATTTCAGCTTAATTAGT 57.637 29.630 7.08 0.00 36.92 2.24
375 376 9.231297 TGCTTCAATTTCAGCTTAATTAGTACT 57.769 29.630 0.00 0.00 36.92 2.73
376 377 9.495754 GCTTCAATTTCAGCTTAATTAGTACTG 57.504 33.333 5.39 5.53 32.87 2.74
379 380 8.869897 TCAATTTCAGCTTAATTAGTACTGACG 58.130 33.333 5.39 0.00 37.12 4.35
380 381 6.642683 TTTCAGCTTAATTAGTACTGACGC 57.357 37.500 5.39 0.00 37.12 5.19
381 382 4.679662 TCAGCTTAATTAGTACTGACGCC 58.320 43.478 5.39 0.00 32.65 5.68
382 383 4.158949 TCAGCTTAATTAGTACTGACGCCA 59.841 41.667 5.39 0.00 32.65 5.69
383 384 5.050490 CAGCTTAATTAGTACTGACGCCAT 58.950 41.667 5.39 0.00 0.00 4.40
384 385 5.523916 CAGCTTAATTAGTACTGACGCCATT 59.476 40.000 5.39 0.00 0.00 3.16
385 386 6.037172 CAGCTTAATTAGTACTGACGCCATTT 59.963 38.462 5.39 0.00 0.00 2.32
386 387 6.037172 AGCTTAATTAGTACTGACGCCATTTG 59.963 38.462 5.39 0.00 0.00 2.32
387 388 4.616181 AATTAGTACTGACGCCATTTGC 57.384 40.909 5.39 0.00 0.00 3.68
388 389 2.753055 TAGTACTGACGCCATTTGCA 57.247 45.000 5.39 0.00 41.33 4.08
389 390 2.113860 AGTACTGACGCCATTTGCAT 57.886 45.000 0.00 0.00 41.33 3.96
390 391 1.739466 AGTACTGACGCCATTTGCATG 59.261 47.619 0.00 0.00 41.33 4.06
391 392 0.451383 TACTGACGCCATTTGCATGC 59.549 50.000 11.82 11.82 41.33 4.06
392 393 1.213275 CTGACGCCATTTGCATGCA 59.787 52.632 18.46 18.46 41.33 3.96
393 394 0.800683 CTGACGCCATTTGCATGCAG 60.801 55.000 21.50 10.47 41.33 4.41
394 395 1.242665 TGACGCCATTTGCATGCAGA 61.243 50.000 21.50 17.73 41.33 4.26
395 396 0.101759 GACGCCATTTGCATGCAGAT 59.898 50.000 21.50 19.38 41.33 2.90
396 397 0.533491 ACGCCATTTGCATGCAGATT 59.467 45.000 20.32 7.10 41.33 2.40
397 398 1.205657 CGCCATTTGCATGCAGATTC 58.794 50.000 20.32 13.86 41.33 2.52
398 399 1.202371 CGCCATTTGCATGCAGATTCT 60.202 47.619 20.32 0.00 41.33 2.40
399 400 2.201732 GCCATTTGCATGCAGATTCTG 58.798 47.619 20.32 11.55 40.77 3.02
400 401 2.821546 CCATTTGCATGCAGATTCTGG 58.178 47.619 20.32 16.43 31.21 3.86
401 402 2.429250 CCATTTGCATGCAGATTCTGGA 59.571 45.455 20.32 13.00 36.05 3.86
402 403 3.444916 CATTTGCATGCAGATTCTGGAC 58.555 45.455 20.32 2.64 34.07 4.02
403 404 2.502142 TTGCATGCAGATTCTGGACT 57.498 45.000 21.50 0.77 34.07 3.85
404 405 2.502142 TGCATGCAGATTCTGGACTT 57.498 45.000 18.46 0.00 34.07 3.01
405 406 2.089201 TGCATGCAGATTCTGGACTTG 58.911 47.619 18.46 9.65 34.07 3.16
406 407 1.404391 GCATGCAGATTCTGGACTTGG 59.596 52.381 14.21 5.02 34.07 3.61
407 408 2.022195 CATGCAGATTCTGGACTTGGG 58.978 52.381 15.28 0.00 34.07 4.12
408 409 0.329261 TGCAGATTCTGGACTTGGGG 59.671 55.000 15.28 0.00 31.21 4.96
409 410 1.034292 GCAGATTCTGGACTTGGGGC 61.034 60.000 15.28 0.00 31.21 5.80
410 411 0.329261 CAGATTCTGGACTTGGGGCA 59.671 55.000 5.73 0.00 0.00 5.36
411 412 1.075601 AGATTCTGGACTTGGGGCAA 58.924 50.000 0.00 0.00 0.00 4.52
412 413 1.177401 GATTCTGGACTTGGGGCAAC 58.823 55.000 0.00 0.00 0.00 4.17
413 414 0.609131 ATTCTGGACTTGGGGCAACG 60.609 55.000 0.00 0.00 37.60 4.10
424 425 2.650196 GGCAACGCCTTCAATGCA 59.350 55.556 0.00 0.00 46.69 3.96
425 426 1.216178 GGCAACGCCTTCAATGCAT 59.784 52.632 0.00 0.00 46.69 3.96
426 427 0.390209 GGCAACGCCTTCAATGCATT 60.390 50.000 5.99 5.99 46.69 3.56
427 428 0.717224 GCAACGCCTTCAATGCATTG 59.283 50.000 29.75 29.75 38.63 2.82
428 429 1.352114 CAACGCCTTCAATGCATTGG 58.648 50.000 33.22 21.62 38.30 3.16
429 430 1.067706 CAACGCCTTCAATGCATTGGA 60.068 47.619 33.22 26.83 38.30 3.53
430 431 0.527565 ACGCCTTCAATGCATTGGAC 59.472 50.000 33.22 20.61 38.30 4.02
431 432 0.527113 CGCCTTCAATGCATTGGACA 59.473 50.000 33.22 19.29 38.30 4.02
432 433 1.135527 CGCCTTCAATGCATTGGACAT 59.864 47.619 33.22 0.00 38.30 3.06
433 434 2.546778 GCCTTCAATGCATTGGACATG 58.453 47.619 33.22 16.99 38.30 3.21
434 435 2.740580 GCCTTCAATGCATTGGACATGG 60.741 50.000 33.22 24.64 38.30 3.66
435 436 2.159014 CCTTCAATGCATTGGACATGGG 60.159 50.000 33.22 21.11 38.30 4.00
436 437 1.487300 TCAATGCATTGGACATGGGG 58.513 50.000 33.22 10.02 38.30 4.96
437 438 1.006878 TCAATGCATTGGACATGGGGA 59.993 47.619 33.22 12.69 38.30 4.81
438 439 1.137479 CAATGCATTGGACATGGGGAC 59.863 52.381 28.34 0.00 34.22 4.46
439 440 3.474900 CAATGCATTGGACATGGGGACA 61.475 50.000 28.34 0.00 38.34 4.02
440 441 4.944450 CAATGCATTGGACATGGGGACAA 61.944 47.826 28.34 0.00 37.80 3.18
441 442 6.943209 CAATGCATTGGACATGGGGACAAC 62.943 50.000 28.34 0.00 37.80 3.32
451 452 2.584835 TGGGGACAACTCCTTCAATG 57.415 50.000 0.00 0.00 37.59 2.82
452 453 1.780309 TGGGGACAACTCCTTCAATGT 59.220 47.619 0.00 0.00 37.59 2.71
453 454 2.983192 TGGGGACAACTCCTTCAATGTA 59.017 45.455 0.00 0.00 37.59 2.29
454 455 3.244770 TGGGGACAACTCCTTCAATGTAC 60.245 47.826 0.00 0.00 37.59 2.90
455 456 3.000727 GGGACAACTCCTTCAATGTACG 58.999 50.000 0.00 0.00 36.68 3.67
456 457 3.306502 GGGACAACTCCTTCAATGTACGA 60.307 47.826 0.00 0.00 36.68 3.43
457 458 4.312443 GGACAACTCCTTCAATGTACGAA 58.688 43.478 0.00 0.00 33.07 3.85
458 459 4.151867 GGACAACTCCTTCAATGTACGAAC 59.848 45.833 0.00 0.00 33.07 3.95
459 460 4.699637 ACAACTCCTTCAATGTACGAACA 58.300 39.130 0.00 0.00 40.69 3.18
460 461 4.750098 ACAACTCCTTCAATGTACGAACAG 59.250 41.667 0.00 0.00 39.49 3.16
461 462 4.602340 ACTCCTTCAATGTACGAACAGT 57.398 40.909 0.00 0.00 39.49 3.55
462 463 5.717078 ACTCCTTCAATGTACGAACAGTA 57.283 39.130 0.00 0.00 39.49 2.74
463 464 6.092955 ACTCCTTCAATGTACGAACAGTAA 57.907 37.500 0.00 0.00 39.49 2.24
464 465 6.518493 ACTCCTTCAATGTACGAACAGTAAA 58.482 36.000 0.00 0.00 39.49 2.01
465 466 6.645415 ACTCCTTCAATGTACGAACAGTAAAG 59.355 38.462 0.00 0.00 39.49 1.85
466 467 6.751157 TCCTTCAATGTACGAACAGTAAAGA 58.249 36.000 0.00 0.00 39.49 2.52
467 468 6.643770 TCCTTCAATGTACGAACAGTAAAGAC 59.356 38.462 0.00 0.00 39.49 3.01
468 469 6.399669 CCTTCAATGTACGAACAGTAAAGACG 60.400 42.308 0.00 0.00 39.49 4.18
469 470 5.761003 TCAATGTACGAACAGTAAAGACGA 58.239 37.500 0.00 0.00 39.49 4.20
470 471 5.854866 TCAATGTACGAACAGTAAAGACGAG 59.145 40.000 0.00 0.00 39.49 4.18
471 472 5.618056 ATGTACGAACAGTAAAGACGAGA 57.382 39.130 0.00 0.00 39.49 4.04
472 473 4.776743 TGTACGAACAGTAAAGACGAGAC 58.223 43.478 0.00 0.00 37.02 3.36
473 474 4.512944 TGTACGAACAGTAAAGACGAGACT 59.487 41.667 0.00 0.00 37.02 3.24
474 475 4.564940 ACGAACAGTAAAGACGAGACTT 57.435 40.909 0.00 0.00 0.00 3.01
475 476 4.288531 ACGAACAGTAAAGACGAGACTTG 58.711 43.478 0.00 0.00 0.00 3.16
476 477 3.119792 CGAACAGTAAAGACGAGACTTGC 59.880 47.826 0.00 0.00 0.00 4.01
477 478 3.027974 ACAGTAAAGACGAGACTTGCC 57.972 47.619 0.00 0.00 0.00 4.52
478 479 2.628657 ACAGTAAAGACGAGACTTGCCT 59.371 45.455 0.00 0.00 0.00 4.75
479 480 2.989840 CAGTAAAGACGAGACTTGCCTG 59.010 50.000 0.00 0.00 0.00 4.85
480 481 1.727335 GTAAAGACGAGACTTGCCTGC 59.273 52.381 0.00 0.00 0.00 4.85
481 482 0.394565 AAAGACGAGACTTGCCTGCT 59.605 50.000 0.00 0.00 0.00 4.24
482 483 0.394565 AAGACGAGACTTGCCTGCTT 59.605 50.000 0.00 0.00 0.00 3.91
483 484 0.037790 AGACGAGACTTGCCTGCTTC 60.038 55.000 0.00 0.00 0.00 3.86
484 485 0.037790 GACGAGACTTGCCTGCTTCT 60.038 55.000 0.00 0.00 0.00 2.85
485 486 0.037790 ACGAGACTTGCCTGCTTCTC 60.038 55.000 0.00 6.13 0.00 2.87
486 487 2.748268 GAGACTTGCCTGCTTCTCG 58.252 57.895 0.00 0.00 0.00 4.04
487 488 1.357991 GAGACTTGCCTGCTTCTCGC 61.358 60.000 0.00 0.00 39.77 5.03
488 489 2.734673 GACTTGCCTGCTTCTCGCG 61.735 63.158 0.00 0.00 43.27 5.87
489 490 2.740055 CTTGCCTGCTTCTCGCGT 60.740 61.111 5.77 0.00 43.27 6.01
490 491 3.020026 CTTGCCTGCTTCTCGCGTG 62.020 63.158 5.77 3.13 43.27 5.34
491 492 3.807631 TTGCCTGCTTCTCGCGTGT 62.808 57.895 5.77 0.00 43.27 4.49
492 493 3.782244 GCCTGCTTCTCGCGTGTG 61.782 66.667 5.77 2.78 43.27 3.82
493 494 3.782244 CCTGCTTCTCGCGTGTGC 61.782 66.667 5.77 13.30 43.27 4.57
494 495 3.782244 CTGCTTCTCGCGTGTGCC 61.782 66.667 19.45 6.97 43.27 5.01
495 496 4.299547 TGCTTCTCGCGTGTGCCT 62.300 61.111 19.45 0.00 43.27 4.75
496 497 2.126071 GCTTCTCGCGTGTGCCTA 60.126 61.111 5.77 0.00 38.08 3.93
497 498 1.519455 GCTTCTCGCGTGTGCCTAT 60.519 57.895 5.77 0.00 38.08 2.57
498 499 1.483424 GCTTCTCGCGTGTGCCTATC 61.483 60.000 5.77 0.00 38.08 2.08
499 500 0.872021 CTTCTCGCGTGTGCCTATCC 60.872 60.000 5.77 0.00 38.08 2.59
500 501 2.607668 TTCTCGCGTGTGCCTATCCG 62.608 60.000 5.77 0.00 38.08 4.18
501 502 3.411418 CTCGCGTGTGCCTATCCGT 62.411 63.158 5.77 0.00 38.08 4.69
502 503 3.254654 CGCGTGTGCCTATCCGTG 61.255 66.667 0.00 0.00 38.08 4.94
503 504 3.564027 GCGTGTGCCTATCCGTGC 61.564 66.667 0.00 0.00 33.98 5.34
504 505 2.184322 CGTGTGCCTATCCGTGCT 59.816 61.111 0.00 0.00 0.00 4.40
505 506 1.878522 CGTGTGCCTATCCGTGCTC 60.879 63.158 0.00 0.00 0.00 4.26
506 507 1.517832 GTGTGCCTATCCGTGCTCT 59.482 57.895 0.00 0.00 0.00 4.09
507 508 0.528684 GTGTGCCTATCCGTGCTCTC 60.529 60.000 0.00 0.00 0.00 3.20
508 509 1.299468 GTGCCTATCCGTGCTCTCG 60.299 63.158 0.00 0.00 0.00 4.04
509 510 1.753078 TGCCTATCCGTGCTCTCGT 60.753 57.895 0.00 0.00 0.00 4.18
510 511 1.299468 GCCTATCCGTGCTCTCGTG 60.299 63.158 0.00 0.00 0.00 4.35
511 512 2.005960 GCCTATCCGTGCTCTCGTGT 62.006 60.000 0.00 0.00 0.00 4.49
512 513 1.306148 CCTATCCGTGCTCTCGTGTA 58.694 55.000 0.00 0.00 0.00 2.90
513 514 1.002684 CCTATCCGTGCTCTCGTGTAC 60.003 57.143 0.00 0.00 0.00 2.90
514 515 0.654160 TATCCGTGCTCTCGTGTACG 59.346 55.000 0.00 0.00 43.66 3.67
515 516 1.303799 ATCCGTGCTCTCGTGTACGT 61.304 55.000 4.20 0.00 42.78 3.57
516 517 1.796355 CCGTGCTCTCGTGTACGTG 60.796 63.158 0.00 2.24 42.78 4.49
517 518 1.796355 CGTGCTCTCGTGTACGTGG 60.796 63.158 0.00 0.00 40.25 4.94
518 519 2.087009 GTGCTCTCGTGTACGTGGC 61.087 63.158 0.00 8.23 40.80 5.01
519 520 2.265904 TGCTCTCGTGTACGTGGCT 61.266 57.895 0.00 0.00 40.80 4.75
520 521 1.080705 GCTCTCGTGTACGTGGCTT 60.081 57.895 0.00 0.00 40.80 4.35
521 522 1.344942 GCTCTCGTGTACGTGGCTTG 61.345 60.000 0.00 0.00 40.80 4.01
522 523 0.240145 CTCTCGTGTACGTGGCTTGA 59.760 55.000 0.00 0.00 40.80 3.02
523 524 0.885879 TCTCGTGTACGTGGCTTGAT 59.114 50.000 0.00 0.00 40.80 2.57
524 525 1.271379 TCTCGTGTACGTGGCTTGATT 59.729 47.619 0.00 0.00 40.80 2.57
525 526 2.066262 CTCGTGTACGTGGCTTGATTT 58.934 47.619 0.00 0.00 40.80 2.17
526 527 1.795872 TCGTGTACGTGGCTTGATTTG 59.204 47.619 0.00 0.00 40.80 2.32
527 528 1.795872 CGTGTACGTGGCTTGATTTGA 59.204 47.619 0.00 0.00 34.11 2.69
528 529 2.415168 CGTGTACGTGGCTTGATTTGAT 59.585 45.455 0.00 0.00 34.11 2.57
529 530 3.120338 CGTGTACGTGGCTTGATTTGATT 60.120 43.478 0.00 0.00 34.11 2.57
530 531 4.158384 GTGTACGTGGCTTGATTTGATTG 58.842 43.478 0.00 0.00 0.00 2.67
531 532 4.068599 TGTACGTGGCTTGATTTGATTGA 58.931 39.130 0.00 0.00 0.00 2.57
532 533 4.517075 TGTACGTGGCTTGATTTGATTGAA 59.483 37.500 0.00 0.00 0.00 2.69
533 534 4.582701 ACGTGGCTTGATTTGATTGAAA 57.417 36.364 0.00 0.00 0.00 2.69
534 535 5.138125 ACGTGGCTTGATTTGATTGAAAT 57.862 34.783 0.00 0.00 36.94 2.17
535 536 6.266168 ACGTGGCTTGATTTGATTGAAATA 57.734 33.333 0.00 0.00 34.18 1.40
536 537 6.686630 ACGTGGCTTGATTTGATTGAAATAA 58.313 32.000 0.00 0.00 34.18 1.40
537 538 7.151308 ACGTGGCTTGATTTGATTGAAATAAA 58.849 30.769 0.00 0.00 34.18 1.40
538 539 7.655328 ACGTGGCTTGATTTGATTGAAATAAAA 59.345 29.630 0.00 0.00 34.18 1.52
539 540 8.658609 CGTGGCTTGATTTGATTGAAATAAAAT 58.341 29.630 0.00 0.00 34.18 1.82
546 547 9.612066 TGATTTGATTGAAATAAAATAAGGCCC 57.388 29.630 0.00 0.00 34.18 5.80
547 548 8.661352 ATTTGATTGAAATAAAATAAGGCCCG 57.339 30.769 0.00 0.00 32.10 6.13
548 549 6.155475 TGATTGAAATAAAATAAGGCCCGG 57.845 37.500 0.00 0.00 0.00 5.73
549 550 4.394439 TTGAAATAAAATAAGGCCCGGC 57.606 40.909 0.00 0.00 0.00 6.13
562 563 3.012722 CCGGCCCCACCCTCTTAA 61.013 66.667 0.00 0.00 33.26 1.85
563 564 2.608550 CCGGCCCCACCCTCTTAAA 61.609 63.158 0.00 0.00 33.26 1.52
564 565 1.381076 CGGCCCCACCCTCTTAAAA 59.619 57.895 0.00 0.00 33.26 1.52
565 566 0.033503 CGGCCCCACCCTCTTAAAAT 60.034 55.000 0.00 0.00 33.26 1.82
566 567 1.776662 GGCCCCACCCTCTTAAAATC 58.223 55.000 0.00 0.00 0.00 2.17
567 568 1.006639 GGCCCCACCCTCTTAAAATCA 59.993 52.381 0.00 0.00 0.00 2.57
568 569 2.379005 GCCCCACCCTCTTAAAATCAG 58.621 52.381 0.00 0.00 0.00 2.90
569 570 2.950418 GCCCCACCCTCTTAAAATCAGG 60.950 54.545 0.00 0.00 0.00 3.86
577 578 4.723309 CCTCTTAAAATCAGGGGGAGATG 58.277 47.826 0.00 0.00 0.00 2.90
578 579 4.413520 CCTCTTAAAATCAGGGGGAGATGA 59.586 45.833 0.00 0.00 0.00 2.92
579 580 5.074239 CCTCTTAAAATCAGGGGGAGATGAT 59.926 44.000 0.00 0.00 37.77 2.45
580 581 6.411320 CCTCTTAAAATCAGGGGGAGATGATT 60.411 42.308 0.00 0.00 45.67 2.57
581 582 7.202223 CCTCTTAAAATCAGGGGGAGATGATTA 60.202 40.741 1.20 0.00 43.56 1.75
582 583 7.749666 TCTTAAAATCAGGGGGAGATGATTAG 58.250 38.462 1.20 0.00 43.56 1.73
583 584 7.572485 TCTTAAAATCAGGGGGAGATGATTAGA 59.428 37.037 1.20 0.00 43.56 2.10
584 585 6.793518 AAAATCAGGGGGAGATGATTAGAT 57.206 37.500 1.20 0.00 43.56 1.98
585 586 6.793518 AAATCAGGGGGAGATGATTAGATT 57.206 37.500 1.20 0.00 43.56 2.40
586 587 7.895144 AAATCAGGGGGAGATGATTAGATTA 57.105 36.000 1.20 0.00 43.56 1.75
587 588 7.507797 AATCAGGGGGAGATGATTAGATTAG 57.492 40.000 0.00 0.00 42.77 1.73
588 589 6.233045 TCAGGGGGAGATGATTAGATTAGA 57.767 41.667 0.00 0.00 0.00 2.10
589 590 6.634041 TCAGGGGGAGATGATTAGATTAGAA 58.366 40.000 0.00 0.00 0.00 2.10
590 591 7.082316 TCAGGGGGAGATGATTAGATTAGAAA 58.918 38.462 0.00 0.00 0.00 2.52
591 592 7.572485 TCAGGGGGAGATGATTAGATTAGAAAA 59.428 37.037 0.00 0.00 0.00 2.29
592 593 8.220559 CAGGGGGAGATGATTAGATTAGAAAAA 58.779 37.037 0.00 0.00 0.00 1.94
593 594 8.443979 AGGGGGAGATGATTAGATTAGAAAAAG 58.556 37.037 0.00 0.00 0.00 2.27
594 595 8.440771 GGGGGAGATGATTAGATTAGAAAAAGA 58.559 37.037 0.00 0.00 0.00 2.52
595 596 9.853177 GGGGAGATGATTAGATTAGAAAAAGAA 57.147 33.333 0.00 0.00 0.00 2.52
622 623 1.247567 AAAACGCAGGATGAAGTGGG 58.752 50.000 0.00 0.00 39.69 4.61
623 624 0.400213 AAACGCAGGATGAAGTGGGA 59.600 50.000 0.00 0.00 39.69 4.37
624 625 0.036010 AACGCAGGATGAAGTGGGAG 60.036 55.000 0.00 0.00 39.69 4.30
625 626 1.194781 ACGCAGGATGAAGTGGGAGT 61.195 55.000 0.00 0.00 39.69 3.85
626 627 0.824109 CGCAGGATGAAGTGGGAGTA 59.176 55.000 0.00 0.00 39.69 2.59
627 628 1.471676 CGCAGGATGAAGTGGGAGTAC 60.472 57.143 0.00 0.00 39.69 2.73
628 629 1.471676 GCAGGATGAAGTGGGAGTACG 60.472 57.143 0.00 0.00 39.69 3.67
629 630 1.137086 CAGGATGAAGTGGGAGTACGG 59.863 57.143 0.00 0.00 39.69 4.02
630 631 1.006758 AGGATGAAGTGGGAGTACGGA 59.993 52.381 0.00 0.00 0.00 4.69
631 632 2.040178 GGATGAAGTGGGAGTACGGAT 58.960 52.381 0.00 0.00 0.00 4.18
632 633 2.224066 GGATGAAGTGGGAGTACGGATG 60.224 54.545 0.00 0.00 0.00 3.51
633 634 1.191535 TGAAGTGGGAGTACGGATGG 58.808 55.000 0.00 0.00 0.00 3.51
634 635 0.464452 GAAGTGGGAGTACGGATGGG 59.536 60.000 0.00 0.00 0.00 4.00
635 636 0.042131 AAGTGGGAGTACGGATGGGA 59.958 55.000 0.00 0.00 0.00 4.37
636 637 0.397254 AGTGGGAGTACGGATGGGAG 60.397 60.000 0.00 0.00 0.00 4.30
637 638 1.760875 TGGGAGTACGGATGGGAGC 60.761 63.158 0.00 0.00 0.00 4.70
638 639 1.760875 GGGAGTACGGATGGGAGCA 60.761 63.158 0.00 0.00 0.00 4.26
639 640 1.122019 GGGAGTACGGATGGGAGCAT 61.122 60.000 0.00 0.00 0.00 3.79
640 641 0.034059 GGAGTACGGATGGGAGCATG 59.966 60.000 0.00 0.00 0.00 4.06
641 642 0.034059 GAGTACGGATGGGAGCATGG 59.966 60.000 0.00 0.00 0.00 3.66
642 643 1.071471 GTACGGATGGGAGCATGGG 59.929 63.158 0.00 0.00 0.00 4.00
643 644 2.146724 TACGGATGGGAGCATGGGG 61.147 63.158 0.00 0.00 0.00 4.96
644 645 2.613576 TACGGATGGGAGCATGGGGA 62.614 60.000 0.00 0.00 0.00 4.81
645 646 2.842058 GGATGGGAGCATGGGGAG 59.158 66.667 0.00 0.00 0.00 4.30
646 647 2.838467 GGATGGGAGCATGGGGAGG 61.838 68.421 0.00 0.00 0.00 4.30
647 648 1.771746 GATGGGAGCATGGGGAGGA 60.772 63.158 0.00 0.00 0.00 3.71
648 649 1.309013 ATGGGAGCATGGGGAGGAA 60.309 57.895 0.00 0.00 0.00 3.36
649 650 1.358830 ATGGGAGCATGGGGAGGAAG 61.359 60.000 0.00 0.00 0.00 3.46
650 651 2.194326 GGAGCATGGGGAGGAAGC 59.806 66.667 0.00 0.00 0.00 3.86
651 652 2.683465 GGAGCATGGGGAGGAAGCA 61.683 63.158 0.00 0.00 0.00 3.91
652 653 1.153005 GAGCATGGGGAGGAAGCAG 60.153 63.158 0.00 0.00 0.00 4.24
653 654 2.123982 GCATGGGGAGGAAGCAGG 60.124 66.667 0.00 0.00 0.00 4.85
654 655 2.123982 CATGGGGAGGAAGCAGGC 60.124 66.667 0.00 0.00 0.00 4.85
655 656 2.614969 ATGGGGAGGAAGCAGGCA 60.615 61.111 0.00 0.00 0.00 4.75
656 657 2.240918 ATGGGGAGGAAGCAGGCAA 61.241 57.895 0.00 0.00 0.00 4.52
657 658 2.044551 GGGGAGGAAGCAGGCAAG 60.045 66.667 0.00 0.00 0.00 4.01
658 659 2.753446 GGGAGGAAGCAGGCAAGC 60.753 66.667 0.00 0.00 0.00 4.01
660 661 2.045131 GGAGGAAGCAGGCAAGCTG 61.045 63.158 5.21 0.00 45.89 4.24
661 662 2.035312 AGGAAGCAGGCAAGCTGG 59.965 61.111 5.21 0.00 45.89 4.85
662 663 2.034687 GGAAGCAGGCAAGCTGGA 59.965 61.111 5.21 0.00 45.89 3.86
663 664 1.379576 GGAAGCAGGCAAGCTGGAT 60.380 57.895 5.21 0.00 45.89 3.41
664 665 1.382692 GGAAGCAGGCAAGCTGGATC 61.383 60.000 5.21 0.17 45.89 3.36
665 666 1.379576 AAGCAGGCAAGCTGGATCC 60.380 57.895 4.20 4.20 45.89 3.36
666 667 3.207669 GCAGGCAAGCTGGATCCG 61.208 66.667 7.39 3.14 0.00 4.18
667 668 2.515523 CAGGCAAGCTGGATCCGG 60.516 66.667 16.98 16.98 0.00 5.14
668 669 2.688666 AGGCAAGCTGGATCCGGA 60.689 61.111 25.54 6.61 0.00 5.14
669 670 2.203126 GGCAAGCTGGATCCGGAG 60.203 66.667 25.54 13.59 0.00 4.63
670 671 2.899339 GCAAGCTGGATCCGGAGC 60.899 66.667 25.54 19.71 35.28 4.70
671 672 2.587194 CAAGCTGGATCCGGAGCG 60.587 66.667 25.54 6.95 40.34 5.03
713 714 5.408604 GGTGTTTCTAGATTGACAATCGTGT 59.591 40.000 19.87 7.86 42.75 4.49
714 715 6.588756 GGTGTTTCTAGATTGACAATCGTGTA 59.411 38.462 19.87 8.52 42.75 2.90
730 731 3.767673 TCGTGTAAGGATTCTAGCACCTT 59.232 43.478 15.39 15.39 44.67 3.50
745 2405 0.036306 ACCTTCAATCGTGGGTGGTC 59.964 55.000 0.00 0.00 0.00 4.02
753 2413 0.178984 TCGTGGGTGGTCTGTCACTA 60.179 55.000 0.00 0.00 37.75 2.74
878 2544 0.179084 TAGGCGTGCATTGAGCTACC 60.179 55.000 0.00 0.00 45.94 3.18
1207 3906 4.981415 GGTACGAGAACGGCAGTT 57.019 55.556 0.50 0.50 44.47 3.16
1377 4076 2.584418 CTCATCAGGGCGCAGTCG 60.584 66.667 10.83 0.00 39.07 4.18
1506 4208 1.447643 GATGCGCCATCTACTGGGT 59.552 57.895 4.18 0.00 46.06 4.51
1955 5070 0.475632 TTCCTGTGGGTGGTGAGGAT 60.476 55.000 0.00 0.00 34.53 3.24
2361 7344 1.224592 CCTGGCCGCTAAGGTTCAT 59.775 57.895 0.00 0.00 43.70 2.57
2438 7421 2.360350 CATGGAAGCTGCCGGTGT 60.360 61.111 6.16 0.00 0.00 4.16
2475 7464 4.156190 ACGACGATATGAAGTCAGACTTGT 59.844 41.667 21.00 10.68 38.80 3.16
2506 7495 8.937634 ATCCTTTCTTTTGCTGCTTTATTATG 57.062 30.769 0.00 0.00 0.00 1.90
2507 7496 8.121305 TCCTTTCTTTTGCTGCTTTATTATGA 57.879 30.769 0.00 0.00 0.00 2.15
2508 7497 8.752187 TCCTTTCTTTTGCTGCTTTATTATGAT 58.248 29.630 0.00 0.00 0.00 2.45
2681 7815 3.698029 AATAAATGATGTGTCTGCCGC 57.302 42.857 0.00 0.00 0.00 6.53
2682 7816 2.106477 TAAATGATGTGTCTGCCGCA 57.894 45.000 0.00 0.00 38.10 5.69
2805 8038 6.655003 AGATGTAAGGAATAACCAGTTGTGTG 59.345 38.462 0.00 0.00 42.04 3.82
2806 8039 4.517453 TGTAAGGAATAACCAGTTGTGTGC 59.483 41.667 0.00 0.00 42.04 4.57
2807 8040 3.508845 AGGAATAACCAGTTGTGTGCT 57.491 42.857 0.00 0.00 42.04 4.40
2808 8041 3.832527 AGGAATAACCAGTTGTGTGCTT 58.167 40.909 0.00 0.00 42.04 3.91
2809 8042 3.821033 AGGAATAACCAGTTGTGTGCTTC 59.179 43.478 0.00 0.00 42.04 3.86
2810 8043 3.821033 GGAATAACCAGTTGTGTGCTTCT 59.179 43.478 0.00 0.00 38.79 2.85
2811 8044 5.001232 GGAATAACCAGTTGTGTGCTTCTA 58.999 41.667 0.00 0.00 38.79 2.10
2812 8045 5.122396 GGAATAACCAGTTGTGTGCTTCTAG 59.878 44.000 0.00 0.00 38.79 2.43
2813 8046 1.884235 ACCAGTTGTGTGCTTCTAGC 58.116 50.000 0.00 0.00 42.82 3.42
2963 9860 2.262423 GACCTCCAGTCTGTTGCTTT 57.738 50.000 0.00 0.00 42.69 3.51
3069 9995 4.918588 AGGAAACGGAACATTACCTGATT 58.081 39.130 0.00 0.00 0.00 2.57
3105 10031 4.164843 AGGTCAAGGTCAAGCAGTTTTA 57.835 40.909 0.00 0.00 0.00 1.52
3125 10051 7.744715 AGTTTTATAATGCGACTCAAACTTTCG 59.255 33.333 0.00 0.00 30.61 3.46
3136 10062 7.412020 GCGACTCAAACTTTCGAGAATTAATCT 60.412 37.037 0.00 0.00 42.61 2.40
3275 10202 2.037367 ACTCTAGAGGCGCACCCA 59.963 61.111 23.50 0.00 36.11 4.51
3293 10220 3.680786 GCCGCCACCCAAAGAACC 61.681 66.667 0.00 0.00 0.00 3.62
3302 10229 2.325082 CCAAAGAACCGTCGGCCAG 61.325 63.158 12.28 0.00 0.00 4.85
3303 10230 1.301401 CAAAGAACCGTCGGCCAGA 60.301 57.895 12.28 0.00 0.00 3.86
3305 10232 0.036306 AAAGAACCGTCGGCCAGAAT 59.964 50.000 12.28 0.00 0.00 2.40
3306 10233 0.036306 AAGAACCGTCGGCCAGAATT 59.964 50.000 12.28 0.00 0.00 2.17
3316 10243 3.038280 TCGGCCAGAATTAGAATCCTCA 58.962 45.455 2.24 0.00 0.00 3.86
3322 10249 2.135933 GAATTAGAATCCTCACCGCCG 58.864 52.381 0.00 0.00 0.00 6.46
3408 10345 1.532868 CTTGGCTTCTGGTCTTGTTCG 59.467 52.381 0.00 0.00 0.00 3.95
3415 10352 0.861837 CTGGTCTTGTTCGTCAGCAC 59.138 55.000 0.00 0.00 0.00 4.40
3422 10359 1.371758 GTTCGTCAGCACGCTCAGA 60.372 57.895 0.00 0.00 46.28 3.27
3423 10360 1.371758 TTCGTCAGCACGCTCAGAC 60.372 57.895 0.00 0.00 46.28 3.51
3424 10361 2.749110 TTCGTCAGCACGCTCAGACC 62.749 60.000 4.47 0.00 46.28 3.85
3425 10362 2.433318 GTCAGCACGCTCAGACCC 60.433 66.667 0.00 0.00 0.00 4.46
3426 10363 4.056125 TCAGCACGCTCAGACCCG 62.056 66.667 0.00 0.00 0.00 5.28
3429 10366 4.148825 GCACGCTCAGACCCGGAT 62.149 66.667 0.73 0.00 0.00 4.18
3430 10367 2.105128 CACGCTCAGACCCGGATC 59.895 66.667 0.73 0.00 0.00 3.36
3431 10368 3.148279 ACGCTCAGACCCGGATCC 61.148 66.667 0.73 0.00 0.00 3.36
3432 10369 3.147595 CGCTCAGACCCGGATCCA 61.148 66.667 13.41 0.00 0.00 3.41
3433 10370 2.818132 GCTCAGACCCGGATCCAG 59.182 66.667 13.41 4.76 0.00 3.86
3434 10371 2.060980 GCTCAGACCCGGATCCAGT 61.061 63.158 13.41 8.47 0.00 4.00
3435 10372 1.819229 CTCAGACCCGGATCCAGTG 59.181 63.158 13.41 1.31 0.00 3.66
3436 10373 1.680522 CTCAGACCCGGATCCAGTGG 61.681 65.000 13.41 11.33 0.00 4.00
3440 10377 4.181010 CCCGGATCCAGTGGGCAG 62.181 72.222 13.41 2.77 35.82 4.85
3441 10378 4.181010 CCGGATCCAGTGGGCAGG 62.181 72.222 13.41 8.44 0.00 4.85
3442 10379 3.402681 CGGATCCAGTGGGCAGGT 61.403 66.667 13.41 0.00 0.00 4.00
3443 10380 2.592308 GGATCCAGTGGGCAGGTC 59.408 66.667 9.92 0.45 0.00 3.85
3444 10381 2.592308 GATCCAGTGGGCAGGTCC 59.408 66.667 9.92 0.00 0.00 4.46
3454 10391 2.916355 GGCAGGTCCCTACTCATGA 58.084 57.895 0.00 0.00 0.00 3.07
3455 10392 1.204146 GGCAGGTCCCTACTCATGAA 58.796 55.000 0.00 0.00 0.00 2.57
3456 10393 1.771255 GGCAGGTCCCTACTCATGAAT 59.229 52.381 0.00 0.00 0.00 2.57
3457 10394 2.972713 GGCAGGTCCCTACTCATGAATA 59.027 50.000 0.00 0.00 0.00 1.75
3458 10395 3.007398 GGCAGGTCCCTACTCATGAATAG 59.993 52.174 4.17 4.17 0.00 1.73
3459 10396 3.556004 GCAGGTCCCTACTCATGAATAGC 60.556 52.174 5.66 0.00 0.00 2.97
3460 10397 3.007398 CAGGTCCCTACTCATGAATAGCC 59.993 52.174 5.66 2.37 0.00 3.93
3461 10398 3.116551 AGGTCCCTACTCATGAATAGCCT 60.117 47.826 5.66 4.59 0.00 4.58
3462 10399 3.648545 GGTCCCTACTCATGAATAGCCTT 59.351 47.826 5.66 0.00 0.00 4.35
3463 10400 4.838986 GGTCCCTACTCATGAATAGCCTTA 59.161 45.833 5.66 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.452953 CGGTCGAGCCTATGCCTACA 61.453 60.000 9.39 0.00 38.69 2.74
1 2 1.170919 TCGGTCGAGCCTATGCCTAC 61.171 60.000 9.39 0.00 38.69 3.18
2 3 1.149854 TCGGTCGAGCCTATGCCTA 59.850 57.895 9.39 0.00 38.69 3.93
4 5 2.027751 GTCGGTCGAGCCTATGCC 59.972 66.667 9.39 0.00 38.69 4.40
5 6 2.353607 CGTCGGTCGAGCCTATGC 60.354 66.667 9.39 0.00 42.86 3.14
6 7 3.417601 TCGTCGGTCGAGCCTATG 58.582 61.111 9.39 3.34 44.01 2.23
15 16 3.699130 GAGTCTCGCGTCGTCGGTC 62.699 68.421 5.77 0.00 37.56 4.79
17 18 4.517703 GGAGTCTCGCGTCGTCGG 62.518 72.222 5.77 0.00 37.56 4.79
18 19 3.423077 GAGGAGTCTCGCGTCGTCG 62.423 68.421 5.77 0.00 40.37 5.12
19 20 2.400402 GAGGAGTCTCGCGTCGTC 59.600 66.667 5.77 3.51 0.00 4.20
20 21 3.126225 GGAGGAGTCTCGCGTCGT 61.126 66.667 5.77 0.00 40.85 4.34
26 27 1.810532 CGGAAAGGGAGGAGTCTCG 59.189 63.158 0.00 0.00 40.85 4.04
28 29 0.973496 GAGCGGAAAGGGAGGAGTCT 60.973 60.000 0.00 0.00 0.00 3.24
30 31 1.990614 GGAGCGGAAAGGGAGGAGT 60.991 63.158 0.00 0.00 0.00 3.85
31 32 2.904131 GGAGCGGAAAGGGAGGAG 59.096 66.667 0.00 0.00 0.00 3.69
32 33 3.075005 CGGAGCGGAAAGGGAGGA 61.075 66.667 0.00 0.00 0.00 3.71
78 79 4.516195 GACCGGGCGGAGAAGCTC 62.516 72.222 6.32 0.00 38.96 4.09
80 81 4.388499 TTGACCGGGCGGAGAAGC 62.388 66.667 6.32 0.00 38.96 3.86
81 82 2.434359 GTTGACCGGGCGGAGAAG 60.434 66.667 6.32 0.00 38.96 2.85
82 83 2.920912 AGTTGACCGGGCGGAGAA 60.921 61.111 6.32 0.00 38.96 2.87
83 84 3.691342 CAGTTGACCGGGCGGAGA 61.691 66.667 6.32 0.00 38.96 3.71
113 114 1.448540 GATGTCCTGTGGCGTGGAG 60.449 63.158 0.00 0.00 32.36 3.86
114 115 2.662596 GATGTCCTGTGGCGTGGA 59.337 61.111 0.00 0.00 0.00 4.02
115 116 2.436646 GGATGTCCTGTGGCGTGG 60.437 66.667 0.00 0.00 0.00 4.94
117 118 4.082523 CGGGATGTCCTGTGGCGT 62.083 66.667 0.00 0.00 37.62 5.68
118 119 3.723235 CTCGGGATGTCCTGTGGCG 62.723 68.421 7.71 0.00 43.01 5.69
120 121 2.187946 GCTCGGGATGTCCTGTGG 59.812 66.667 7.71 4.09 43.01 4.17
123 124 2.427540 GATCGGCTCGGGATGTCCTG 62.428 65.000 1.23 1.23 43.86 3.86
124 125 2.123251 ATCGGCTCGGGATGTCCT 60.123 61.111 0.00 0.00 35.95 3.85
125 126 2.340443 GATCGGCTCGGGATGTCC 59.660 66.667 0.00 0.00 0.00 4.02
126 127 2.049985 CGATCGGCTCGGGATGTC 60.050 66.667 7.38 0.00 43.82 3.06
144 145 3.948086 GACACCGTCGTCGAGCAGG 62.948 68.421 2.98 2.29 39.71 4.85
145 146 2.502080 GACACCGTCGTCGAGCAG 60.502 66.667 2.98 0.00 39.71 4.24
159 160 3.986006 GTCTCCACGGTGCGGACA 61.986 66.667 9.96 0.00 0.00 4.02
169 170 1.133458 GTCGGTCGTACGTCTCCAC 59.867 63.158 16.05 5.28 34.94 4.02
170 171 2.034879 GGTCGGTCGTACGTCTCCA 61.035 63.158 16.05 5.37 34.94 3.86
171 172 2.787915 GGTCGGTCGTACGTCTCC 59.212 66.667 16.05 14.56 34.94 3.71
172 173 2.397252 CGGTCGGTCGTACGTCTC 59.603 66.667 16.05 7.19 34.94 3.36
173 174 3.121030 CCGGTCGGTCGTACGTCT 61.121 66.667 16.05 0.00 34.94 4.18
177 178 3.815396 GTCCCCGGTCGGTCGTAC 61.815 72.222 8.67 0.00 0.00 3.67
188 189 2.444140 AGGAATCTCCCGTCCCCG 60.444 66.667 0.00 0.00 37.19 5.73
189 190 3.552219 GAGGAATCTCCCGTCCCC 58.448 66.667 0.00 0.00 37.19 4.81
197 198 0.545646 AGCAGCAAGGGAGGAATCTC 59.454 55.000 0.00 0.00 39.25 2.75
198 199 0.545646 GAGCAGCAAGGGAGGAATCT 59.454 55.000 0.00 0.00 0.00 2.40
200 201 1.222936 CGAGCAGCAAGGGAGGAAT 59.777 57.895 0.00 0.00 0.00 3.01
201 202 2.665000 CGAGCAGCAAGGGAGGAA 59.335 61.111 0.00 0.00 0.00 3.36
202 203 3.393970 CCGAGCAGCAAGGGAGGA 61.394 66.667 0.00 0.00 0.00 3.71
213 214 1.463553 TTGTGTCTCTCTGCCGAGCA 61.464 55.000 0.00 0.00 37.19 4.26
214 215 0.319900 TTTGTGTCTCTCTGCCGAGC 60.320 55.000 0.00 0.00 37.19 5.03
215 216 1.423395 GTTTGTGTCTCTCTGCCGAG 58.577 55.000 0.00 0.00 38.67 4.63
217 218 0.034059 AGGTTTGTGTCTCTCTGCCG 59.966 55.000 0.00 0.00 0.00 5.69
218 219 1.517242 CAGGTTTGTGTCTCTCTGCC 58.483 55.000 0.00 0.00 0.00 4.85
220 221 1.517242 GGCAGGTTTGTGTCTCTCTG 58.483 55.000 0.00 0.00 0.00 3.35
221 222 0.398318 GGGCAGGTTTGTGTCTCTCT 59.602 55.000 0.00 0.00 0.00 3.10
222 223 0.951040 CGGGCAGGTTTGTGTCTCTC 60.951 60.000 0.00 0.00 0.00 3.20
223 224 1.071471 CGGGCAGGTTTGTGTCTCT 59.929 57.895 0.00 0.00 0.00 3.10
224 225 1.966451 CCGGGCAGGTTTGTGTCTC 60.966 63.158 0.00 0.00 34.51 3.36
225 226 2.113139 CCGGGCAGGTTTGTGTCT 59.887 61.111 0.00 0.00 34.51 3.41
226 227 3.670377 GCCGGGCAGGTTTGTGTC 61.670 66.667 15.62 0.00 43.70 3.67
227 228 4.514585 TGCCGGGCAGGTTTGTGT 62.515 61.111 19.77 0.00 43.70 3.72
285 286 4.570663 GATCCCCGCGTCGTGGAG 62.571 72.222 26.19 13.68 36.78 3.86
288 289 3.214123 TAGGATCCCCGCGTCGTG 61.214 66.667 8.55 0.00 37.58 4.35
289 290 3.214845 GTAGGATCCCCGCGTCGT 61.215 66.667 8.55 0.00 37.58 4.34
290 291 4.323843 CGTAGGATCCCCGCGTCG 62.324 72.222 8.55 0.93 37.58 5.12
291 292 3.214845 ACGTAGGATCCCCGCGTC 61.215 66.667 18.54 0.00 42.10 5.19
292 293 3.214845 GACGTAGGATCCCCGCGT 61.215 66.667 20.84 20.84 45.89 6.01
293 294 4.323843 CGACGTAGGATCCCCGCG 62.324 72.222 18.54 17.07 39.99 6.46
294 295 3.974757 CCGACGTAGGATCCCCGC 61.975 72.222 18.54 11.67 37.58 6.13
295 296 3.292936 CCCGACGTAGGATCCCCG 61.293 72.222 17.16 17.36 37.58 5.73
296 297 3.613689 GCCCGACGTAGGATCCCC 61.614 72.222 17.16 0.00 0.00 4.81
297 298 2.521224 AGCCCGACGTAGGATCCC 60.521 66.667 17.16 1.70 0.00 3.85
298 299 2.728817 CAGCCCGACGTAGGATCC 59.271 66.667 17.16 2.48 0.00 3.36
299 300 2.027751 GCAGCCCGACGTAGGATC 59.972 66.667 17.16 7.50 0.00 3.36
300 301 3.537874 GGCAGCCCGACGTAGGAT 61.538 66.667 17.16 2.09 0.00 3.24
301 302 4.753662 AGGCAGCCCGACGTAGGA 62.754 66.667 17.16 0.00 35.76 2.94
302 303 4.514577 CAGGCAGCCCGACGTAGG 62.515 72.222 8.22 7.88 35.76 3.18
303 304 3.760035 ACAGGCAGCCCGACGTAG 61.760 66.667 8.22 0.00 35.76 3.51
304 305 4.063967 CACAGGCAGCCCGACGTA 62.064 66.667 8.22 0.00 35.76 3.57
309 310 4.659172 TTTCCCACAGGCAGCCCG 62.659 66.667 8.22 0.00 35.76 6.13
310 311 2.203625 TTTTCCCACAGGCAGCCC 60.204 61.111 8.22 0.00 0.00 5.19
311 312 2.278330 CCTTTTCCCACAGGCAGCC 61.278 63.158 1.84 1.84 0.00 4.85
312 313 0.827507 TTCCTTTTCCCACAGGCAGC 60.828 55.000 0.00 0.00 0.00 5.25
313 314 1.341209 GTTTCCTTTTCCCACAGGCAG 59.659 52.381 0.00 0.00 0.00 4.85
314 315 1.342474 TGTTTCCTTTTCCCACAGGCA 60.342 47.619 0.00 0.00 0.00 4.75
315 316 1.068588 GTGTTTCCTTTTCCCACAGGC 59.931 52.381 0.00 0.00 0.00 4.85
316 317 1.686587 GGTGTTTCCTTTTCCCACAGG 59.313 52.381 0.00 0.00 0.00 4.00
317 318 1.686587 GGGTGTTTCCTTTTCCCACAG 59.313 52.381 0.00 0.00 38.15 3.66
318 319 1.007238 TGGGTGTTTCCTTTTCCCACA 59.993 47.619 0.00 0.00 42.52 4.17
319 320 1.783071 TGGGTGTTTCCTTTTCCCAC 58.217 50.000 0.00 0.00 42.52 4.61
321 322 1.544246 CGATGGGTGTTTCCTTTTCCC 59.456 52.381 0.00 0.00 38.68 3.97
322 323 1.067846 GCGATGGGTGTTTCCTTTTCC 60.068 52.381 0.00 0.00 36.25 3.13
323 324 1.611491 TGCGATGGGTGTTTCCTTTTC 59.389 47.619 0.00 0.00 36.25 2.29
324 325 1.698506 TGCGATGGGTGTTTCCTTTT 58.301 45.000 0.00 0.00 36.25 2.27
325 326 1.545582 CATGCGATGGGTGTTTCCTTT 59.454 47.619 0.00 0.00 36.25 3.11
326 327 1.176527 CATGCGATGGGTGTTTCCTT 58.823 50.000 0.00 0.00 36.25 3.36
327 328 1.315257 GCATGCGATGGGTGTTTCCT 61.315 55.000 0.00 0.00 36.25 3.36
328 329 1.139520 GCATGCGATGGGTGTTTCC 59.860 57.895 0.00 0.00 0.00 3.13
329 330 0.243365 TTGCATGCGATGGGTGTTTC 59.757 50.000 14.09 0.00 0.00 2.78
330 331 0.896923 ATTGCATGCGATGGGTGTTT 59.103 45.000 19.93 0.00 0.00 2.83
331 332 0.173935 CATTGCATGCGATGGGTGTT 59.826 50.000 32.35 4.63 34.91 3.32
332 333 1.811195 CATTGCATGCGATGGGTGT 59.189 52.632 32.35 5.36 34.91 4.16
333 334 4.722008 CATTGCATGCGATGGGTG 57.278 55.556 32.35 14.73 34.91 4.61
342 343 3.932710 AGCTGAAATTGAAGCATTGCATG 59.067 39.130 11.91 0.00 42.06 4.06
343 344 4.202245 AGCTGAAATTGAAGCATTGCAT 57.798 36.364 11.91 0.00 42.06 3.96
344 345 3.671008 AGCTGAAATTGAAGCATTGCA 57.329 38.095 11.91 0.00 42.06 4.08
345 346 6.657836 ATTAAGCTGAAATTGAAGCATTGC 57.342 33.333 13.46 0.00 42.06 3.56
346 347 9.362539 ACTAATTAAGCTGAAATTGAAGCATTG 57.637 29.630 14.55 4.81 42.06 2.82
349 350 9.231297 AGTACTAATTAAGCTGAAATTGAAGCA 57.769 29.630 14.55 0.00 42.06 3.91
350 351 9.495754 CAGTACTAATTAAGCTGAAATTGAAGC 57.504 33.333 14.55 4.78 39.82 3.86
353 354 8.869897 CGTCAGTACTAATTAAGCTGAAATTGA 58.130 33.333 14.55 3.73 37.84 2.57
354 355 7.636359 GCGTCAGTACTAATTAAGCTGAAATTG 59.364 37.037 14.55 8.90 37.84 2.32
355 356 7.201617 GGCGTCAGTACTAATTAAGCTGAAATT 60.202 37.037 11.00 11.00 37.84 1.82
356 357 6.258068 GGCGTCAGTACTAATTAAGCTGAAAT 59.742 38.462 12.13 0.00 37.84 2.17
357 358 5.579511 GGCGTCAGTACTAATTAAGCTGAAA 59.420 40.000 12.13 0.00 37.84 2.69
358 359 5.107133 GGCGTCAGTACTAATTAAGCTGAA 58.893 41.667 12.13 0.00 37.84 3.02
359 360 4.158949 TGGCGTCAGTACTAATTAAGCTGA 59.841 41.667 0.00 8.38 34.30 4.26
360 361 4.430007 TGGCGTCAGTACTAATTAAGCTG 58.570 43.478 0.00 4.94 0.00 4.24
361 362 4.730949 TGGCGTCAGTACTAATTAAGCT 57.269 40.909 0.00 0.00 0.00 3.74
362 363 5.986004 AATGGCGTCAGTACTAATTAAGC 57.014 39.130 0.00 0.00 0.00 3.09
363 364 6.192360 GCAAATGGCGTCAGTACTAATTAAG 58.808 40.000 0.00 0.00 0.00 1.85
364 365 6.114221 GCAAATGGCGTCAGTACTAATTAA 57.886 37.500 0.00 0.00 0.00 1.40
365 366 5.728351 GCAAATGGCGTCAGTACTAATTA 57.272 39.130 0.00 0.00 0.00 1.40
366 367 4.616181 GCAAATGGCGTCAGTACTAATT 57.384 40.909 0.00 0.00 0.00 1.40
379 380 2.201732 CAGAATCTGCATGCAAATGGC 58.798 47.619 22.88 10.22 45.13 4.40
380 381 2.429250 TCCAGAATCTGCATGCAAATGG 59.571 45.455 22.88 21.95 0.00 3.16
381 382 3.130516 AGTCCAGAATCTGCATGCAAATG 59.869 43.478 22.88 14.64 0.00 2.32
382 383 3.362706 AGTCCAGAATCTGCATGCAAAT 58.637 40.909 22.88 12.00 0.00 2.32
383 384 2.799017 AGTCCAGAATCTGCATGCAAA 58.201 42.857 22.88 9.58 0.00 3.68
384 385 2.490509 CAAGTCCAGAATCTGCATGCAA 59.509 45.455 22.88 13.05 0.00 4.08
385 386 2.089201 CAAGTCCAGAATCTGCATGCA 58.911 47.619 21.29 21.29 0.00 3.96
386 387 1.404391 CCAAGTCCAGAATCTGCATGC 59.596 52.381 11.82 11.82 0.00 4.06
387 388 2.022195 CCCAAGTCCAGAATCTGCATG 58.978 52.381 4.40 0.84 0.00 4.06
388 389 1.064166 CCCCAAGTCCAGAATCTGCAT 60.064 52.381 4.40 0.00 0.00 3.96
389 390 0.329261 CCCCAAGTCCAGAATCTGCA 59.671 55.000 4.40 0.00 0.00 4.41
390 391 1.034292 GCCCCAAGTCCAGAATCTGC 61.034 60.000 4.40 0.00 0.00 4.26
391 392 0.329261 TGCCCCAAGTCCAGAATCTG 59.671 55.000 2.68 2.68 0.00 2.90
392 393 1.075601 TTGCCCCAAGTCCAGAATCT 58.924 50.000 0.00 0.00 0.00 2.40
393 394 1.177401 GTTGCCCCAAGTCCAGAATC 58.823 55.000 0.00 0.00 0.00 2.52
394 395 0.609131 CGTTGCCCCAAGTCCAGAAT 60.609 55.000 0.00 0.00 0.00 2.40
395 396 1.228124 CGTTGCCCCAAGTCCAGAA 60.228 57.895 0.00 0.00 0.00 3.02
396 397 2.429930 CGTTGCCCCAAGTCCAGA 59.570 61.111 0.00 0.00 0.00 3.86
397 398 3.365265 GCGTTGCCCCAAGTCCAG 61.365 66.667 0.00 0.00 0.00 3.86
398 399 4.966787 GGCGTTGCCCCAAGTCCA 62.967 66.667 0.00 0.00 44.06 4.02
408 409 3.126729 AATGCATTGAAGGCGTTGC 57.873 47.368 12.09 0.00 38.94 4.17
410 411 1.067635 GTCCAATGCATTGAAGGCGTT 60.068 47.619 35.47 3.15 40.93 4.84
411 412 0.527565 GTCCAATGCATTGAAGGCGT 59.472 50.000 35.47 0.00 40.14 5.68
412 413 0.527113 TGTCCAATGCATTGAAGGCG 59.473 50.000 35.47 20.62 40.14 5.52
413 414 2.546778 CATGTCCAATGCATTGAAGGC 58.453 47.619 35.47 23.28 40.14 4.35
414 415 2.159014 CCCATGTCCAATGCATTGAAGG 60.159 50.000 35.47 26.13 40.14 3.46
415 416 2.159014 CCCCATGTCCAATGCATTGAAG 60.159 50.000 35.47 21.95 40.14 3.02
416 417 1.832366 CCCCATGTCCAATGCATTGAA 59.168 47.619 35.47 18.21 40.14 2.69
417 418 1.006878 TCCCCATGTCCAATGCATTGA 59.993 47.619 35.47 19.56 40.14 2.57
418 419 1.137479 GTCCCCATGTCCAATGCATTG 59.863 52.381 28.91 28.91 37.52 2.82
419 420 1.273154 TGTCCCCATGTCCAATGCATT 60.273 47.619 5.99 5.99 0.00 3.56
420 421 0.335705 TGTCCCCATGTCCAATGCAT 59.664 50.000 0.00 0.00 0.00 3.96
421 422 0.113972 TTGTCCCCATGTCCAATGCA 59.886 50.000 0.00 0.00 0.00 3.96
422 423 0.532115 GTTGTCCCCATGTCCAATGC 59.468 55.000 0.00 0.00 0.00 3.56
423 424 2.094675 GAGTTGTCCCCATGTCCAATG 58.905 52.381 0.00 0.00 0.00 2.82
424 425 1.005924 GGAGTTGTCCCCATGTCCAAT 59.994 52.381 0.00 0.00 36.76 3.16
425 426 0.404040 GGAGTTGTCCCCATGTCCAA 59.596 55.000 0.00 0.00 36.76 3.53
426 427 0.475632 AGGAGTTGTCCCCATGTCCA 60.476 55.000 0.00 0.00 45.26 4.02
427 428 0.698818 AAGGAGTTGTCCCCATGTCC 59.301 55.000 0.00 0.00 45.26 4.02
428 429 1.351017 TGAAGGAGTTGTCCCCATGTC 59.649 52.381 0.00 0.00 45.26 3.06
429 430 1.444933 TGAAGGAGTTGTCCCCATGT 58.555 50.000 0.00 0.00 45.26 3.21
430 431 2.584835 TTGAAGGAGTTGTCCCCATG 57.415 50.000 0.00 0.00 45.26 3.66
431 432 2.379907 ACATTGAAGGAGTTGTCCCCAT 59.620 45.455 0.00 0.00 45.26 4.00
432 433 1.780309 ACATTGAAGGAGTTGTCCCCA 59.220 47.619 0.00 0.00 45.26 4.96
433 434 2.586648 ACATTGAAGGAGTTGTCCCC 57.413 50.000 0.00 0.00 45.26 4.81
434 435 3.000727 CGTACATTGAAGGAGTTGTCCC 58.999 50.000 0.00 0.00 45.26 4.46
435 436 3.921677 TCGTACATTGAAGGAGTTGTCC 58.078 45.455 0.00 0.00 44.33 4.02
436 437 4.748102 TGTTCGTACATTGAAGGAGTTGTC 59.252 41.667 0.00 0.00 0.00 3.18
437 438 4.699637 TGTTCGTACATTGAAGGAGTTGT 58.300 39.130 0.00 0.00 0.00 3.32
438 439 4.750098 ACTGTTCGTACATTGAAGGAGTTG 59.250 41.667 0.00 0.00 32.86 3.16
439 440 4.957296 ACTGTTCGTACATTGAAGGAGTT 58.043 39.130 0.00 0.00 32.86 3.01
440 441 4.602340 ACTGTTCGTACATTGAAGGAGT 57.398 40.909 0.00 0.00 32.86 3.85
441 442 6.866770 TCTTTACTGTTCGTACATTGAAGGAG 59.133 38.462 13.85 0.00 33.84 3.69
442 443 6.643770 GTCTTTACTGTTCGTACATTGAAGGA 59.356 38.462 13.85 5.05 33.84 3.36
443 444 6.399669 CGTCTTTACTGTTCGTACATTGAAGG 60.400 42.308 13.85 3.27 33.84 3.46
444 445 6.361481 TCGTCTTTACTGTTCGTACATTGAAG 59.639 38.462 9.61 9.61 34.13 3.02
445 446 6.207928 TCGTCTTTACTGTTCGTACATTGAA 58.792 36.000 0.00 0.00 32.86 2.69
446 447 5.761003 TCGTCTTTACTGTTCGTACATTGA 58.239 37.500 0.00 0.00 32.86 2.57
447 448 5.854866 TCTCGTCTTTACTGTTCGTACATTG 59.145 40.000 0.00 0.00 32.86 2.82
448 449 5.855395 GTCTCGTCTTTACTGTTCGTACATT 59.145 40.000 0.00 0.00 32.86 2.71
449 450 5.180868 AGTCTCGTCTTTACTGTTCGTACAT 59.819 40.000 0.00 0.00 32.86 2.29
450 451 4.512944 AGTCTCGTCTTTACTGTTCGTACA 59.487 41.667 0.00 0.00 0.00 2.90
451 452 5.028428 AGTCTCGTCTTTACTGTTCGTAC 57.972 43.478 0.00 0.00 0.00 3.67
452 453 5.446709 CAAGTCTCGTCTTTACTGTTCGTA 58.553 41.667 0.00 0.00 0.00 3.43
453 454 4.288531 CAAGTCTCGTCTTTACTGTTCGT 58.711 43.478 0.00 0.00 0.00 3.85
454 455 3.119792 GCAAGTCTCGTCTTTACTGTTCG 59.880 47.826 0.00 0.00 0.00 3.95
455 456 3.429207 GGCAAGTCTCGTCTTTACTGTTC 59.571 47.826 0.00 0.00 0.00 3.18
456 457 3.069729 AGGCAAGTCTCGTCTTTACTGTT 59.930 43.478 0.00 0.00 0.00 3.16
457 458 2.628657 AGGCAAGTCTCGTCTTTACTGT 59.371 45.455 0.00 0.00 0.00 3.55
458 459 2.989840 CAGGCAAGTCTCGTCTTTACTG 59.010 50.000 0.00 0.00 0.00 2.74
459 460 2.610727 GCAGGCAAGTCTCGTCTTTACT 60.611 50.000 0.00 0.00 0.00 2.24
460 461 1.727335 GCAGGCAAGTCTCGTCTTTAC 59.273 52.381 0.00 0.00 0.00 2.01
461 462 1.618837 AGCAGGCAAGTCTCGTCTTTA 59.381 47.619 0.00 0.00 0.00 1.85
462 463 0.394565 AGCAGGCAAGTCTCGTCTTT 59.605 50.000 0.00 0.00 0.00 2.52
463 464 0.394565 AAGCAGGCAAGTCTCGTCTT 59.605 50.000 0.00 0.00 0.00 3.01
464 465 0.037790 GAAGCAGGCAAGTCTCGTCT 60.038 55.000 0.00 0.00 0.00 4.18
465 466 0.037790 AGAAGCAGGCAAGTCTCGTC 60.038 55.000 0.00 0.00 0.00 4.20
466 467 0.037790 GAGAAGCAGGCAAGTCTCGT 60.038 55.000 0.00 0.00 0.00 4.18
467 468 2.748268 GAGAAGCAGGCAAGTCTCG 58.252 57.895 0.00 0.00 0.00 4.04
468 469 2.748268 CGAGAAGCAGGCAAGTCTC 58.252 57.895 8.66 8.66 34.43 3.36
479 480 1.483424 GATAGGCACACGCGAGAAGC 61.483 60.000 15.93 15.03 39.92 3.86
480 481 0.872021 GGATAGGCACACGCGAGAAG 60.872 60.000 15.93 4.59 39.92 2.85
481 482 1.141019 GGATAGGCACACGCGAGAA 59.859 57.895 15.93 0.00 39.92 2.87
482 483 2.805546 GGATAGGCACACGCGAGA 59.194 61.111 15.93 0.00 39.92 4.04
483 484 2.655364 CGGATAGGCACACGCGAG 60.655 66.667 15.93 7.88 39.92 5.03
484 485 3.445687 ACGGATAGGCACACGCGA 61.446 61.111 15.93 0.00 39.92 5.87
485 486 3.254654 CACGGATAGGCACACGCG 61.255 66.667 3.53 3.53 39.92 6.01
486 487 3.564027 GCACGGATAGGCACACGC 61.564 66.667 0.00 0.00 37.44 5.34
487 488 1.878522 GAGCACGGATAGGCACACG 60.879 63.158 0.00 0.00 0.00 4.49
488 489 0.528684 GAGAGCACGGATAGGCACAC 60.529 60.000 0.00 0.00 0.00 3.82
489 490 1.816537 GAGAGCACGGATAGGCACA 59.183 57.895 0.00 0.00 0.00 4.57
490 491 1.299468 CGAGAGCACGGATAGGCAC 60.299 63.158 0.00 0.00 0.00 5.01
491 492 1.753078 ACGAGAGCACGGATAGGCA 60.753 57.895 0.00 0.00 37.61 4.75
492 493 1.299468 CACGAGAGCACGGATAGGC 60.299 63.158 0.00 0.00 37.61 3.93
493 494 1.002684 GTACACGAGAGCACGGATAGG 60.003 57.143 0.00 0.00 37.61 2.57
494 495 1.332993 CGTACACGAGAGCACGGATAG 60.333 57.143 0.00 0.00 43.02 2.08
495 496 0.654160 CGTACACGAGAGCACGGATA 59.346 55.000 0.00 0.00 43.02 2.59
496 497 1.303799 ACGTACACGAGAGCACGGAT 61.304 55.000 9.04 0.00 43.02 4.18
497 498 1.962822 ACGTACACGAGAGCACGGA 60.963 57.895 9.04 0.00 43.02 4.69
498 499 1.796355 CACGTACACGAGAGCACGG 60.796 63.158 9.04 0.00 43.02 4.94
499 500 1.796355 CCACGTACACGAGAGCACG 60.796 63.158 9.04 0.00 43.02 5.34
500 501 2.087009 GCCACGTACACGAGAGCAC 61.087 63.158 9.04 0.00 43.02 4.40
501 502 1.802337 AAGCCACGTACACGAGAGCA 61.802 55.000 9.04 0.00 43.02 4.26
502 503 1.080705 AAGCCACGTACACGAGAGC 60.081 57.895 9.04 7.88 43.02 4.09
503 504 0.240145 TCAAGCCACGTACACGAGAG 59.760 55.000 9.04 0.00 43.02 3.20
504 505 0.885879 ATCAAGCCACGTACACGAGA 59.114 50.000 9.04 0.00 43.02 4.04
505 506 1.710013 AATCAAGCCACGTACACGAG 58.290 50.000 9.04 0.00 43.02 4.18
506 507 1.795872 CAAATCAAGCCACGTACACGA 59.204 47.619 9.04 0.00 43.02 4.35
507 508 1.795872 TCAAATCAAGCCACGTACACG 59.204 47.619 0.00 0.00 46.33 4.49
508 509 4.083537 TCAATCAAATCAAGCCACGTACAC 60.084 41.667 0.00 0.00 0.00 2.90
509 510 4.068599 TCAATCAAATCAAGCCACGTACA 58.931 39.130 0.00 0.00 0.00 2.90
510 511 4.678509 TCAATCAAATCAAGCCACGTAC 57.321 40.909 0.00 0.00 0.00 3.67
511 512 5.697473 TTTCAATCAAATCAAGCCACGTA 57.303 34.783 0.00 0.00 0.00 3.57
512 513 4.582701 TTTCAATCAAATCAAGCCACGT 57.417 36.364 0.00 0.00 0.00 4.49
513 514 7.579589 TTTATTTCAATCAAATCAAGCCACG 57.420 32.000 0.00 0.00 36.09 4.94
520 521 9.612066 GGGCCTTATTTTATTTCAATCAAATCA 57.388 29.630 0.84 0.00 36.09 2.57
521 522 8.764287 CGGGCCTTATTTTATTTCAATCAAATC 58.236 33.333 0.84 0.00 36.09 2.17
522 523 7.714813 CCGGGCCTTATTTTATTTCAATCAAAT 59.285 33.333 0.84 0.00 38.35 2.32
523 524 7.044798 CCGGGCCTTATTTTATTTCAATCAAA 58.955 34.615 0.84 0.00 0.00 2.69
524 525 6.578023 CCGGGCCTTATTTTATTTCAATCAA 58.422 36.000 0.84 0.00 0.00 2.57
525 526 5.452636 GCCGGGCCTTATTTTATTTCAATCA 60.453 40.000 8.12 0.00 0.00 2.57
526 527 4.988540 GCCGGGCCTTATTTTATTTCAATC 59.011 41.667 8.12 0.00 0.00 2.67
527 528 4.202315 GGCCGGGCCTTATTTTATTTCAAT 60.202 41.667 30.86 0.00 46.69 2.57
528 529 3.133183 GGCCGGGCCTTATTTTATTTCAA 59.867 43.478 30.86 0.00 46.69 2.69
529 530 2.696187 GGCCGGGCCTTATTTTATTTCA 59.304 45.455 30.86 0.00 46.69 2.69
530 531 3.380479 GGCCGGGCCTTATTTTATTTC 57.620 47.619 30.86 0.00 46.69 2.17
545 546 2.144859 TTTTAAGAGGGTGGGGCCGG 62.145 60.000 0.00 0.00 38.44 6.13
546 547 0.033503 ATTTTAAGAGGGTGGGGCCG 60.034 55.000 0.00 0.00 38.44 6.13
547 548 1.006639 TGATTTTAAGAGGGTGGGGCC 59.993 52.381 0.00 0.00 0.00 5.80
548 549 2.379005 CTGATTTTAAGAGGGTGGGGC 58.621 52.381 0.00 0.00 0.00 5.80
549 550 2.358195 CCCTGATTTTAAGAGGGTGGGG 60.358 54.545 0.00 0.00 41.58 4.96
550 551 2.358195 CCCCTGATTTTAAGAGGGTGGG 60.358 54.545 0.00 0.00 44.63 4.61
551 552 2.358195 CCCCCTGATTTTAAGAGGGTGG 60.358 54.545 0.00 0.00 44.63 4.61
552 553 2.580783 TCCCCCTGATTTTAAGAGGGTG 59.419 50.000 0.00 0.00 44.63 4.61
553 554 2.853077 CTCCCCCTGATTTTAAGAGGGT 59.147 50.000 0.00 0.00 44.63 4.34
554 555 3.123273 TCTCCCCCTGATTTTAAGAGGG 58.877 50.000 0.00 0.00 45.57 4.30
555 556 4.413520 TCATCTCCCCCTGATTTTAAGAGG 59.586 45.833 0.00 0.00 0.00 3.69
556 557 5.636903 TCATCTCCCCCTGATTTTAAGAG 57.363 43.478 0.00 0.00 0.00 2.85
557 558 6.596869 AATCATCTCCCCCTGATTTTAAGA 57.403 37.500 0.00 0.00 38.60 2.10
558 559 7.749666 TCTAATCATCTCCCCCTGATTTTAAG 58.250 38.462 3.40 0.00 41.22 1.85
559 560 7.705912 TCTAATCATCTCCCCCTGATTTTAA 57.294 36.000 3.40 0.00 41.22 1.52
560 561 7.895144 ATCTAATCATCTCCCCCTGATTTTA 57.105 36.000 3.40 0.00 41.22 1.52
561 562 6.793518 ATCTAATCATCTCCCCCTGATTTT 57.206 37.500 3.40 0.00 41.22 1.82
562 563 6.793518 AATCTAATCATCTCCCCCTGATTT 57.206 37.500 3.40 0.00 41.22 2.17
563 564 7.259391 TCTAATCTAATCATCTCCCCCTGATT 58.741 38.462 3.57 3.57 42.92 2.57
564 565 6.820205 TCTAATCTAATCATCTCCCCCTGAT 58.180 40.000 0.00 0.00 33.59 2.90
565 566 6.233045 TCTAATCTAATCATCTCCCCCTGA 57.767 41.667 0.00 0.00 0.00 3.86
566 567 6.942163 TTCTAATCTAATCATCTCCCCCTG 57.058 41.667 0.00 0.00 0.00 4.45
567 568 7.954539 TTTTCTAATCTAATCATCTCCCCCT 57.045 36.000 0.00 0.00 0.00 4.79
568 569 8.440771 TCTTTTTCTAATCTAATCATCTCCCCC 58.559 37.037 0.00 0.00 0.00 5.40
569 570 9.853177 TTCTTTTTCTAATCTAATCATCTCCCC 57.147 33.333 0.00 0.00 0.00 4.81
602 603 1.613437 CCCACTTCATCCTGCGTTTTT 59.387 47.619 0.00 0.00 0.00 1.94
603 604 1.202879 TCCCACTTCATCCTGCGTTTT 60.203 47.619 0.00 0.00 0.00 2.43
604 605 0.400213 TCCCACTTCATCCTGCGTTT 59.600 50.000 0.00 0.00 0.00 3.60
605 606 0.036010 CTCCCACTTCATCCTGCGTT 60.036 55.000 0.00 0.00 0.00 4.84
606 607 1.194781 ACTCCCACTTCATCCTGCGT 61.195 55.000 0.00 0.00 0.00 5.24
607 608 0.824109 TACTCCCACTTCATCCTGCG 59.176 55.000 0.00 0.00 0.00 5.18
608 609 1.471676 CGTACTCCCACTTCATCCTGC 60.472 57.143 0.00 0.00 0.00 4.85
609 610 1.137086 CCGTACTCCCACTTCATCCTG 59.863 57.143 0.00 0.00 0.00 3.86
610 611 1.006758 TCCGTACTCCCACTTCATCCT 59.993 52.381 0.00 0.00 0.00 3.24
611 612 1.481871 TCCGTACTCCCACTTCATCC 58.518 55.000 0.00 0.00 0.00 3.51
612 613 2.224066 CCATCCGTACTCCCACTTCATC 60.224 54.545 0.00 0.00 0.00 2.92
613 614 1.762957 CCATCCGTACTCCCACTTCAT 59.237 52.381 0.00 0.00 0.00 2.57
614 615 1.191535 CCATCCGTACTCCCACTTCA 58.808 55.000 0.00 0.00 0.00 3.02
615 616 0.464452 CCCATCCGTACTCCCACTTC 59.536 60.000 0.00 0.00 0.00 3.01
616 617 0.042131 TCCCATCCGTACTCCCACTT 59.958 55.000 0.00 0.00 0.00 3.16
617 618 0.397254 CTCCCATCCGTACTCCCACT 60.397 60.000 0.00 0.00 0.00 4.00
618 619 2.029307 GCTCCCATCCGTACTCCCAC 62.029 65.000 0.00 0.00 0.00 4.61
619 620 1.760875 GCTCCCATCCGTACTCCCA 60.761 63.158 0.00 0.00 0.00 4.37
620 621 1.122019 ATGCTCCCATCCGTACTCCC 61.122 60.000 0.00 0.00 0.00 4.30
621 622 0.034059 CATGCTCCCATCCGTACTCC 59.966 60.000 0.00 0.00 0.00 3.85
622 623 0.034059 CCATGCTCCCATCCGTACTC 59.966 60.000 0.00 0.00 0.00 2.59
623 624 1.410850 CCCATGCTCCCATCCGTACT 61.411 60.000 0.00 0.00 0.00 2.73
624 625 1.071471 CCCATGCTCCCATCCGTAC 59.929 63.158 0.00 0.00 0.00 3.67
625 626 2.146724 CCCCATGCTCCCATCCGTA 61.147 63.158 0.00 0.00 0.00 4.02
626 627 3.492353 CCCCATGCTCCCATCCGT 61.492 66.667 0.00 0.00 0.00 4.69
627 628 3.170672 TCCCCATGCTCCCATCCG 61.171 66.667 0.00 0.00 0.00 4.18
628 629 2.838467 CCTCCCCATGCTCCCATCC 61.838 68.421 0.00 0.00 0.00 3.51
629 630 1.355718 TTCCTCCCCATGCTCCCATC 61.356 60.000 0.00 0.00 0.00 3.51
630 631 1.309013 TTCCTCCCCATGCTCCCAT 60.309 57.895 0.00 0.00 0.00 4.00
631 632 2.002977 CTTCCTCCCCATGCTCCCA 61.003 63.158 0.00 0.00 0.00 4.37
632 633 2.922234 CTTCCTCCCCATGCTCCC 59.078 66.667 0.00 0.00 0.00 4.30
633 634 2.194326 GCTTCCTCCCCATGCTCC 59.806 66.667 0.00 0.00 0.00 4.70
634 635 1.153005 CTGCTTCCTCCCCATGCTC 60.153 63.158 0.00 0.00 0.00 4.26
635 636 2.687610 CCTGCTTCCTCCCCATGCT 61.688 63.158 0.00 0.00 0.00 3.79
636 637 2.123982 CCTGCTTCCTCCCCATGC 60.124 66.667 0.00 0.00 0.00 4.06
637 638 2.123982 GCCTGCTTCCTCCCCATG 60.124 66.667 0.00 0.00 0.00 3.66
638 639 2.220786 CTTGCCTGCTTCCTCCCCAT 62.221 60.000 0.00 0.00 0.00 4.00
639 640 2.858476 TTGCCTGCTTCCTCCCCA 60.858 61.111 0.00 0.00 0.00 4.96
640 641 2.044551 CTTGCCTGCTTCCTCCCC 60.045 66.667 0.00 0.00 0.00 4.81
641 642 2.753446 GCTTGCCTGCTTCCTCCC 60.753 66.667 0.00 0.00 0.00 4.30
642 643 2.045131 CAGCTTGCCTGCTTCCTCC 61.045 63.158 0.00 0.00 41.98 4.30
643 644 2.045131 CCAGCTTGCCTGCTTCCTC 61.045 63.158 0.00 0.00 41.98 3.71
644 645 1.860944 ATCCAGCTTGCCTGCTTCCT 61.861 55.000 0.00 0.00 41.98 3.36
645 646 1.379576 ATCCAGCTTGCCTGCTTCC 60.380 57.895 0.00 0.00 41.98 3.46
646 647 1.382692 GGATCCAGCTTGCCTGCTTC 61.383 60.000 6.95 0.00 41.98 3.86
647 648 1.379576 GGATCCAGCTTGCCTGCTT 60.380 57.895 6.95 0.00 41.98 3.91
648 649 2.274760 GGATCCAGCTTGCCTGCT 59.725 61.111 6.95 0.00 45.18 4.24
649 650 3.207669 CGGATCCAGCTTGCCTGC 61.208 66.667 13.41 0.00 40.36 4.85
650 651 2.515523 CCGGATCCAGCTTGCCTG 60.516 66.667 13.41 0.00 41.41 4.85
651 652 2.688666 TCCGGATCCAGCTTGCCT 60.689 61.111 13.41 0.00 0.00 4.75
652 653 2.203126 CTCCGGATCCAGCTTGCC 60.203 66.667 13.41 0.00 0.00 4.52
653 654 2.899339 GCTCCGGATCCAGCTTGC 60.899 66.667 15.24 0.00 32.48 4.01
654 655 2.587194 CGCTCCGGATCCAGCTTG 60.587 66.667 18.99 4.08 33.09 4.01
665 666 1.454201 TCTATAGCATCTCCGCTCCG 58.546 55.000 0.00 0.00 42.62 4.63
666 667 4.829064 CTATCTATAGCATCTCCGCTCC 57.171 50.000 0.00 0.00 42.62 4.70
713 714 5.128827 ACGATTGAAGGTGCTAGAATCCTTA 59.871 40.000 11.60 1.63 41.00 2.69
714 715 4.080863 ACGATTGAAGGTGCTAGAATCCTT 60.081 41.667 11.50 11.50 43.20 3.36
722 723 0.981183 ACCCACGATTGAAGGTGCTA 59.019 50.000 0.00 0.00 32.85 3.49
730 731 0.320374 GACAGACCACCCACGATTGA 59.680 55.000 0.00 0.00 0.00 2.57
745 2405 4.701651 TGCTGGAAATCCAATTAGTGACAG 59.298 41.667 3.35 0.00 46.97 3.51
753 2413 2.607499 TGTGGTGCTGGAAATCCAATT 58.393 42.857 3.35 0.00 46.97 2.32
878 2544 7.900352 GTCGATTGAAAGAATAAACTACTGCTG 59.100 37.037 0.00 0.00 0.00 4.41
920 3571 9.790344 GTATAAGTAGGAGTAGATGTTGGACTA 57.210 37.037 0.00 0.00 0.00 2.59
1207 3906 1.298340 CCACCTTCACCGGTATGCA 59.702 57.895 6.87 0.00 34.94 3.96
1261 3960 3.379445 GAGGTTCTCGACGCCCCA 61.379 66.667 0.00 0.00 0.00 4.96
1631 4464 1.823295 GCATAGAGCCGGTGGAAGA 59.177 57.895 1.90 0.00 37.23 2.87
2279 7262 0.374758 CATGAAGGTCGTCAATGCCG 59.625 55.000 0.00 0.00 0.00 5.69
2352 7335 1.743623 CACCGCGGCATGAACCTTA 60.744 57.895 28.58 0.00 0.00 2.69
2389 7372 2.731691 AAGCGGTGCAGATCACGGTT 62.732 55.000 0.00 0.00 46.56 4.44
2475 7464 5.673514 AGCAGCAAAAGAAAGGATTTTGAA 58.326 33.333 13.68 0.00 46.01 2.69
2506 7495 3.535561 ACTGACCGACCATCATTCAATC 58.464 45.455 0.00 0.00 0.00 2.67
2507 7496 3.198635 AGACTGACCGACCATCATTCAAT 59.801 43.478 0.00 0.00 30.31 2.57
2508 7497 2.567169 AGACTGACCGACCATCATTCAA 59.433 45.455 0.00 0.00 30.31 2.69
2614 7748 7.489160 ACAAGGGAAAAAGTGATTGTAAAGAC 58.511 34.615 0.00 0.00 0.00 3.01
2681 7815 2.288702 TGGTTCACGGCCAATTCATTTG 60.289 45.455 2.24 0.00 32.29 2.32
2682 7816 1.967066 TGGTTCACGGCCAATTCATTT 59.033 42.857 2.24 0.00 32.29 2.32
2705 7839 8.045720 ACTTATCTATAACCATCCAACCACAT 57.954 34.615 0.00 0.00 0.00 3.21
2724 7858 4.660789 ATGCTTTGGATGGCAACTTATC 57.339 40.909 0.00 0.00 41.90 1.75
2805 8038 1.557371 AGGGAGGAACTTGCTAGAAGC 59.443 52.381 1.04 0.00 41.55 3.86
2806 8039 5.622346 ATTAGGGAGGAACTTGCTAGAAG 57.378 43.478 1.04 0.00 41.55 2.85
2807 8040 6.203072 AGTATTAGGGAGGAACTTGCTAGAA 58.797 40.000 1.04 0.00 41.55 2.10
2808 8041 5.778542 AGTATTAGGGAGGAACTTGCTAGA 58.221 41.667 1.04 0.00 41.55 2.43
2809 8042 7.288158 AGTTAGTATTAGGGAGGAACTTGCTAG 59.712 40.741 0.00 0.00 41.55 3.42
2810 8043 7.069578 CAGTTAGTATTAGGGAGGAACTTGCTA 59.930 40.741 0.00 0.00 41.55 3.49
2811 8044 5.965091 AGTTAGTATTAGGGAGGAACTTGCT 59.035 40.000 0.00 0.00 41.55 3.91
2812 8045 6.049790 CAGTTAGTATTAGGGAGGAACTTGC 58.950 44.000 0.00 0.00 41.55 4.01
2813 8046 6.583562 CCAGTTAGTATTAGGGAGGAACTTG 58.416 44.000 0.00 0.00 41.55 3.16
2814 8047 5.130643 GCCAGTTAGTATTAGGGAGGAACTT 59.869 44.000 0.00 0.00 41.55 2.66
2816 8049 4.501058 CGCCAGTTAGTATTAGGGAGGAAC 60.501 50.000 0.00 0.00 0.00 3.62
2817 8050 3.640029 CGCCAGTTAGTATTAGGGAGGAA 59.360 47.826 0.00 0.00 0.00 3.36
2963 9860 2.569853 ACCATCTCACATTGGTTACGGA 59.430 45.455 0.00 0.00 43.73 4.69
2988 9914 3.055891 GGTAGCAATGGCATTTTTGGACT 60.056 43.478 10.65 4.23 44.61 3.85
3033 9959 3.252215 CCGTTTCCTCTTTACAACATGCA 59.748 43.478 0.00 0.00 0.00 3.96
3034 9960 3.500680 TCCGTTTCCTCTTTACAACATGC 59.499 43.478 0.00 0.00 0.00 4.06
3069 9995 6.655930 ACCTTGACCTAAGTTTCAACAGTTA 58.344 36.000 0.00 0.00 34.45 2.24
3105 10031 5.168569 TCTCGAAAGTTTGAGTCGCATTAT 58.831 37.500 7.94 0.00 39.30 1.28
3136 10062 4.072131 GCTCGGCCAAAATAGGATATCAA 58.928 43.478 2.24 0.00 0.00 2.57
3257 10184 2.010582 CTGGGTGCGCCTCTAGAGTC 62.011 65.000 17.49 4.70 34.45 3.36
3275 10202 2.597510 GTTCTTTGGGTGGCGGCT 60.598 61.111 11.43 0.00 0.00 5.52
3285 10212 0.882927 TTCTGGCCGACGGTTCTTTG 60.883 55.000 16.73 0.76 0.00 2.77
3293 10220 2.135933 GGATTCTAATTCTGGCCGACG 58.864 52.381 0.00 0.00 0.00 5.12
3302 10229 2.135933 CGGCGGTGAGGATTCTAATTC 58.864 52.381 0.00 0.00 0.00 2.17
3303 10230 1.810412 GCGGCGGTGAGGATTCTAATT 60.810 52.381 9.78 0.00 0.00 1.40
3305 10232 1.143183 GCGGCGGTGAGGATTCTAA 59.857 57.895 9.78 0.00 0.00 2.10
3306 10233 2.792947 GGCGGCGGTGAGGATTCTA 61.793 63.158 9.78 0.00 0.00 2.10
3341 10268 3.740397 CGCCACCGTCGTCTACCA 61.740 66.667 0.00 0.00 0.00 3.25
3372 10299 0.777446 CAAGGAAGGTTGGGAGGGAA 59.223 55.000 0.00 0.00 0.00 3.97
3373 10300 1.140134 CCAAGGAAGGTTGGGAGGGA 61.140 60.000 0.00 0.00 43.02 4.20
3408 10345 2.433318 GGGTCTGAGCGTGCTGAC 60.433 66.667 0.00 1.16 36.40 3.51
3415 10352 3.144120 CTGGATCCGGGTCTGAGCG 62.144 68.421 15.87 0.00 0.00 5.03
3423 10360 4.181010 CTGCCCACTGGATCCGGG 62.181 72.222 24.68 20.52 43.42 5.73
3424 10361 4.181010 CCTGCCCACTGGATCCGG 62.181 72.222 19.66 19.66 37.06 5.14
3425 10362 3.391665 GACCTGCCCACTGGATCCG 62.392 68.421 7.39 4.62 38.25 4.18
3426 10363 2.592308 GACCTGCCCACTGGATCC 59.408 66.667 4.20 4.20 38.25 3.36
3427 10364 2.592308 GGACCTGCCCACTGGATC 59.408 66.667 0.00 0.00 38.25 3.36
3436 10373 1.204146 TTCATGAGTAGGGACCTGCC 58.796 55.000 0.00 0.00 0.00 4.85
3437 10374 3.556004 GCTATTCATGAGTAGGGACCTGC 60.556 52.174 22.47 7.33 0.00 4.85
3438 10375 3.007398 GGCTATTCATGAGTAGGGACCTG 59.993 52.174 22.47 1.67 0.00 4.00
3439 10376 3.116551 AGGCTATTCATGAGTAGGGACCT 60.117 47.826 22.47 17.78 0.00 3.85
3440 10377 3.243724 AGGCTATTCATGAGTAGGGACC 58.756 50.000 22.47 16.21 0.00 4.46
3441 10378 4.965200 AAGGCTATTCATGAGTAGGGAC 57.035 45.455 22.47 9.30 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.