Multiple sequence alignment - TraesCS2B01G080200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G080200 chr2B 100.000 4951 0 0 1 4951 44755390 44750440 0.000000e+00 9143.0
1 TraesCS2B01G080200 chr2B 95.652 2898 108 9 482 3376 45542213 45545095 0.000000e+00 4638.0
2 TraesCS2B01G080200 chr2B 87.814 3463 355 27 644 4100 45033138 45029737 0.000000e+00 3995.0
3 TraesCS2B01G080200 chr2B 89.053 2978 263 31 1551 4521 45135922 45133001 0.000000e+00 3635.0
4 TraesCS2B01G080200 chr2B 91.409 2037 147 6 1874 3884 45667348 45669382 0.000000e+00 2767.0
5 TraesCS2B01G080200 chr2B 81.549 1588 251 26 2636 4216 44926463 44928015 0.000000e+00 1271.0
6 TraesCS2B01G080200 chr2B 81.195 1590 253 29 2636 4216 45617054 45615502 0.000000e+00 1238.0
7 TraesCS2B01G080200 chr2B 92.061 718 46 7 3869 4583 45669711 45670420 0.000000e+00 1000.0
8 TraesCS2B01G080200 chr2B 89.102 835 45 14 3364 4198 45545561 45546349 0.000000e+00 996.0
9 TraesCS2B01G080200 chr2B 88.344 489 52 5 4194 4678 45546428 45546915 2.570000e-162 582.0
10 TraesCS2B01G080200 chr2B 76.754 1140 178 56 1 1084 45688086 45689194 1.560000e-154 556.0
11 TraesCS2B01G080200 chr2B 78.692 535 65 31 3 500 45137533 45137011 1.340000e-80 311.0
12 TraesCS2B01G080200 chr2B 87.850 214 20 2 4 211 45034475 45034262 3.830000e-61 246.0
13 TraesCS2B01G080200 chr2B 83.636 220 22 5 286 499 45041694 45041483 1.410000e-45 195.0
14 TraesCS2B01G080200 chr2B 83.871 217 21 5 286 496 45532978 45533186 1.410000e-45 195.0
15 TraesCS2B01G080200 chr2B 75.163 459 65 21 48 499 45033700 45033284 2.370000e-38 171.0
16 TraesCS2B01G080200 chr2B 81.452 124 13 8 16 137 45042069 45041954 5.280000e-15 93.5
17 TraesCS2B01G080200 chr2D 93.338 4608 259 22 1 4583 28002416 27997832 0.000000e+00 6765.0
18 TraesCS2B01G080200 chr2D 87.722 4056 421 49 1 4009 27956130 27960155 0.000000e+00 4660.0
19 TraesCS2B01G080200 chr2D 81.753 2373 373 34 1881 4241 28417361 28415037 0.000000e+00 1929.0
20 TraesCS2B01G080200 chr2D 79.392 1019 132 45 112 1084 28095230 28094244 0.000000e+00 647.0
21 TraesCS2B01G080200 chr2D 89.306 346 32 4 4240 4583 52621087 52621429 3.540000e-116 429.0
22 TraesCS2B01G080200 chr2D 81.202 516 69 16 1 499 28009875 28009371 1.670000e-104 390.0
23 TraesCS2B01G080200 chr2D 85.417 384 45 9 4141 4515 27960450 27960831 6.010000e-104 388.0
24 TraesCS2B01G080200 chr2D 86.970 330 37 5 4354 4678 27969266 27968938 2.820000e-97 366.0
25 TraesCS2B01G080200 chr2A 88.017 4640 457 49 1 4583 30165592 30160995 0.000000e+00 5397.0
26 TraesCS2B01G080200 chr2A 83.474 3546 532 33 684 4212 30300994 30304502 0.000000e+00 3253.0
27 TraesCS2B01G080200 chr2A 84.093 3313 489 20 700 4002 30272069 30268785 0.000000e+00 3164.0
28 TraesCS2B01G080200 chr2A 83.594 3328 505 23 687 4002 30256435 30253137 0.000000e+00 3083.0
29 TraesCS2B01G080200 chr2A 79.884 517 51 25 1 499 30213197 30212716 3.690000e-86 329.0
30 TraesCS2B01G080200 chr2A 79.046 482 65 25 37 499 30188677 30188213 1.040000e-76 298.0
31 TraesCS2B01G080200 chr1A 78.571 448 42 23 56 464 240954028 240953596 3.830000e-61 246.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G080200 chr2B 44750440 44755390 4950 True 9143.000000 9143 100.000000 1 4951 1 chr2B.!!$R1 4950
1 TraesCS2B01G080200 chr2B 45542213 45546915 4702 False 2072.000000 4638 91.032667 482 4678 3 chr2B.!!$F4 4196
2 TraesCS2B01G080200 chr2B 45133001 45137533 4532 True 1973.000000 3635 83.872500 3 4521 2 chr2B.!!$R5 4518
3 TraesCS2B01G080200 chr2B 45667348 45670420 3072 False 1883.500000 2767 91.735000 1874 4583 2 chr2B.!!$F5 2709
4 TraesCS2B01G080200 chr2B 45029737 45034475 4738 True 1470.666667 3995 83.609000 4 4100 3 chr2B.!!$R3 4096
5 TraesCS2B01G080200 chr2B 44926463 44928015 1552 False 1271.000000 1271 81.549000 2636 4216 1 chr2B.!!$F1 1580
6 TraesCS2B01G080200 chr2B 45615502 45617054 1552 True 1238.000000 1238 81.195000 2636 4216 1 chr2B.!!$R2 1580
7 TraesCS2B01G080200 chr2B 45688086 45689194 1108 False 556.000000 556 76.754000 1 1084 1 chr2B.!!$F3 1083
8 TraesCS2B01G080200 chr2D 27997832 28002416 4584 True 6765.000000 6765 93.338000 1 4583 1 chr2D.!!$R2 4582
9 TraesCS2B01G080200 chr2D 27956130 27960831 4701 False 2524.000000 4660 86.569500 1 4515 2 chr2D.!!$F2 4514
10 TraesCS2B01G080200 chr2D 28415037 28417361 2324 True 1929.000000 1929 81.753000 1881 4241 1 chr2D.!!$R5 2360
11 TraesCS2B01G080200 chr2D 28094244 28095230 986 True 647.000000 647 79.392000 112 1084 1 chr2D.!!$R4 972
12 TraesCS2B01G080200 chr2D 28009371 28009875 504 True 390.000000 390 81.202000 1 499 1 chr2D.!!$R3 498
13 TraesCS2B01G080200 chr2A 30160995 30165592 4597 True 5397.000000 5397 88.017000 1 4583 1 chr2A.!!$R1 4582
14 TraesCS2B01G080200 chr2A 30300994 30304502 3508 False 3253.000000 3253 83.474000 684 4212 1 chr2A.!!$F1 3528
15 TraesCS2B01G080200 chr2A 30268785 30272069 3284 True 3164.000000 3164 84.093000 700 4002 1 chr2A.!!$R5 3302
16 TraesCS2B01G080200 chr2A 30253137 30256435 3298 True 3083.000000 3083 83.594000 687 4002 1 chr2A.!!$R4 3315

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
434 1205 0.543277 TCCATAACTCAGCCAGCCTG 59.457 55.000 0.00 0.0 43.17 4.85 F
1209 2019 0.545309 TGGCCAGTAGCTCCTCACTT 60.545 55.000 0.00 0.0 43.05 3.16 F
1344 2158 1.075601 TCCCACCTTTCCATGAAGCT 58.924 50.000 0.00 0.0 0.00 3.74 F
2835 3713 1.081509 CCAATTGGCGGTTGTGTCG 60.082 57.895 12.53 0.0 0.00 4.35 F
3509 4866 0.395173 GGATACATGGCACCCGGTTT 60.395 55.000 0.00 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2337 3186 0.179092 GTTCCGATGGTAGTTCCCCG 60.179 60.000 0.00 0.0 34.77 5.73 R
2421 3270 1.066716 TGCCATCTTGCTGGAATTTGC 60.067 47.619 0.00 0.0 38.69 3.68 R
3300 4180 1.093159 CAAGAGCAGAAGCCACATCC 58.907 55.000 0.00 0.0 43.56 3.51 R
3767 5128 1.848388 TGATGCTCCTCATGTCCCATT 59.152 47.619 0.00 0.0 35.05 3.16 R
4887 6892 0.179029 GACCGGAGAGGAGAGGAGAG 60.179 65.000 9.46 0.0 45.00 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.895962 AGTCCTAAAGCTAGATTCCCAATTTTT 59.104 33.333 0.00 0.00 0.00 1.94
69 71 6.966021 TGAAGTGCAGTTACCTACAAATTTC 58.034 36.000 6.80 0.00 0.00 2.17
78 80 8.147704 CAGTTACCTACAAATTTCCCATTGTTT 58.852 33.333 0.00 0.00 40.14 2.83
86 88 4.961438 ATTTCCCATTGTTTCAAGCTGT 57.039 36.364 0.00 0.00 0.00 4.40
230 952 1.745489 GGTCGATGCCACCAAGTCC 60.745 63.158 0.00 0.00 33.63 3.85
236 962 1.899437 ATGCCACCAAGTCCGACGAT 61.899 55.000 0.00 0.00 0.00 3.73
262 999 2.416431 GCATCAGTCAATGGCTTGGTTC 60.416 50.000 0.00 0.00 32.95 3.62
263 1000 2.655090 TCAGTCAATGGCTTGGTTCA 57.345 45.000 0.00 0.00 32.95 3.18
274 1011 1.810412 GCTTGGTTCACCTTCGTGTCT 60.810 52.381 0.00 0.00 41.09 3.41
276 1013 1.410004 TGGTTCACCTTCGTGTCTCT 58.590 50.000 0.00 0.00 41.09 3.10
277 1014 1.068588 TGGTTCACCTTCGTGTCTCTG 59.931 52.381 0.00 0.00 41.09 3.35
279 1044 2.483188 GGTTCACCTTCGTGTCTCTGTT 60.483 50.000 0.00 0.00 41.09 3.16
282 1047 2.429250 TCACCTTCGTGTCTCTGTTTGA 59.571 45.455 0.00 0.00 41.09 2.69
432 1203 0.543749 AGTCCATAACTCAGCCAGCC 59.456 55.000 0.00 0.00 30.02 4.85
433 1204 0.543749 GTCCATAACTCAGCCAGCCT 59.456 55.000 0.00 0.00 0.00 4.58
434 1205 0.543277 TCCATAACTCAGCCAGCCTG 59.457 55.000 0.00 0.00 43.17 4.85
438 1209 1.767654 TAACTCAGCCAGCCTGCACA 61.768 55.000 0.00 0.00 41.50 4.57
439 1210 3.054503 CTCAGCCAGCCTGCACAC 61.055 66.667 0.00 0.00 41.50 3.82
440 1211 4.994471 TCAGCCAGCCTGCACACG 62.994 66.667 0.00 0.00 41.50 4.49
446 1217 1.008538 CAGCCTGCACACGTTTTCC 60.009 57.895 0.00 0.00 0.00 3.13
473 1244 6.199719 GCAAAAGTCTTTGTTCCATTCTTCTG 59.800 38.462 0.00 0.00 43.34 3.02
492 1263 3.317993 TCTGCTTTTCTTTACCCTTGCAC 59.682 43.478 0.00 0.00 0.00 4.57
574 1370 7.990886 TCAACTTACTCAAACATAACTTCTGGT 59.009 33.333 0.00 0.00 0.00 4.00
673 1480 4.669866 TCTTGTAGTCCTCCACTTCCTA 57.330 45.455 0.00 0.00 36.43 2.94
776 1585 2.863312 GCAGCAGCACAAGCAAACATAA 60.863 45.455 0.00 0.00 45.49 1.90
884 1694 3.315191 TCACTAAACTTTTGCAGCTGGAC 59.685 43.478 17.12 0.00 0.00 4.02
1111 1921 4.020128 ACAGTCTTCAAGGTAACATCCCTC 60.020 45.833 0.00 0.00 41.41 4.30
1209 2019 0.545309 TGGCCAGTAGCTCCTCACTT 60.545 55.000 0.00 0.00 43.05 3.16
1291 2105 6.766467 TGATAACTCGTCTGAGCTTACTATGA 59.234 38.462 0.00 0.00 46.69 2.15
1344 2158 1.075601 TCCCACCTTTCCATGAAGCT 58.924 50.000 0.00 0.00 0.00 3.74
1495 2309 8.131100 CAGACACTTTGAGTCACATTACAAAAT 58.869 33.333 0.00 0.00 38.46 1.82
1524 2338 5.180117 TGAGCTTGATCTAAGTTTCAACAGC 59.820 40.000 0.00 0.00 38.70 4.40
1582 2429 5.330233 TGACATCACTCAGGTACTTTAGGA 58.670 41.667 0.00 0.00 34.60 2.94
1637 2485 6.351371 CCATCTCACATTGGTTACTCACTACT 60.351 42.308 0.00 0.00 0.00 2.57
1997 2846 4.721776 AGGCTCCATACCTGTTGAGATTAA 59.278 41.667 0.00 0.00 35.72 1.40
2156 3005 3.135225 CGGTTGGTGACATTACTCAACA 58.865 45.455 0.00 0.00 42.32 3.33
2337 3186 4.130118 ACTTCTCACACAACAATCTCACC 58.870 43.478 0.00 0.00 0.00 4.02
2421 3270 5.782893 TGGAAGTAAACAAGTTTCATGGG 57.217 39.130 0.81 0.00 34.23 4.00
2493 3371 4.223700 TCTCACAATGACTTATCTGGTGCT 59.776 41.667 0.00 0.00 0.00 4.40
2764 3642 5.338871 CCACCACTTACTATTGCTTCCCTAA 60.339 44.000 0.00 0.00 0.00 2.69
2835 3713 1.081509 CCAATTGGCGGTTGTGTCG 60.082 57.895 12.53 0.00 0.00 4.35
2931 3810 5.957771 AGCTAAAGAGGGTGTCATATCAA 57.042 39.130 0.00 0.00 0.00 2.57
3288 4168 3.092301 GCTAAACTTTGGCCAGAGGATT 58.908 45.455 25.88 20.93 0.00 3.01
3300 4180 0.882042 AGAGGATTTGCATAGCGGCG 60.882 55.000 0.51 0.51 36.28 6.46
3508 4865 1.226262 GGATACATGGCACCCGGTT 59.774 57.895 0.00 0.00 0.00 4.44
3509 4866 0.395173 GGATACATGGCACCCGGTTT 60.395 55.000 0.00 0.00 0.00 3.27
3578 4937 9.935682 CGTATGTGAATTATTCTAAAGCATTGT 57.064 29.630 6.50 0.00 0.00 2.71
3666 5025 1.055849 TCTGCTGGAGTTGCTTACCA 58.944 50.000 0.00 0.00 0.00 3.25
3767 5128 2.428491 GCGGAGATTCTAGATCCTCGA 58.572 52.381 8.82 0.00 0.00 4.04
4216 6207 9.836076 CTTGTACTAGTTAATTTTGTAAAGGGC 57.164 33.333 0.00 0.00 0.00 5.19
4423 6420 8.848474 AGTGTTGCTGTATTAGTAATGAAACT 57.152 30.769 5.61 0.00 33.48 2.66
4462 6462 8.507524 AAAGAGAAAATAGGAATTACGGGAAG 57.492 34.615 0.00 0.00 0.00 3.46
4478 6479 4.037565 ACGGGAAGAAGGAAAATGTGTTTC 59.962 41.667 0.00 0.00 0.00 2.78
4557 6561 4.465886 TCTGAAAACCCGAAATGAAAGGA 58.534 39.130 0.00 0.00 0.00 3.36
4568 6572 6.705825 CCCGAAATGAAAGGAAAACAAAGAAT 59.294 34.615 0.00 0.00 0.00 2.40
4638 6643 6.323739 TCATGAGTTGACTGTATATAGGCACA 59.676 38.462 4.21 0.60 34.86 4.57
4643 6648 8.807948 AGTTGACTGTATATAGGCACATTTTT 57.192 30.769 4.21 0.00 34.86 1.94
4647 6652 7.609918 TGACTGTATATAGGCACATTTTTGTGT 59.390 33.333 0.00 0.00 41.53 3.72
4661 6666 6.145371 ACATTTTTGTGTGTTTGTTCACTCAC 59.855 34.615 0.00 0.00 40.08 3.51
4666 6671 5.933790 TGTGTGTTTGTTCACTCACTTTAC 58.066 37.500 7.36 0.00 40.37 2.01
4678 6683 5.010314 TCACTCACTTTACTCCGTATGTTGT 59.990 40.000 0.00 0.00 0.00 3.32
4679 6684 5.694910 CACTCACTTTACTCCGTATGTTGTT 59.305 40.000 0.00 0.00 0.00 2.83
4680 6685 6.202188 CACTCACTTTACTCCGTATGTTGTTT 59.798 38.462 0.00 0.00 0.00 2.83
4681 6686 7.383029 CACTCACTTTACTCCGTATGTTGTTTA 59.617 37.037 0.00 0.00 0.00 2.01
4682 6687 8.092687 ACTCACTTTACTCCGTATGTTGTTTAT 58.907 33.333 0.00 0.00 0.00 1.40
4683 6688 9.577110 CTCACTTTACTCCGTATGTTGTTTATA 57.423 33.333 0.00 0.00 0.00 0.98
4718 6723 9.695526 TTCAAATCATCTTATGTTTGTGAAAGG 57.304 29.630 11.28 0.00 35.15 3.11
4719 6724 9.076781 TCAAATCATCTTATGTTTGTGAAAGGA 57.923 29.630 11.28 0.00 35.15 3.36
4720 6725 9.695526 CAAATCATCTTATGTTTGTGAAAGGAA 57.304 29.630 0.00 0.00 32.11 3.36
4721 6726 9.918630 AAATCATCTTATGTTTGTGAAAGGAAG 57.081 29.630 0.00 0.00 0.00 3.46
4722 6727 7.452880 TCATCTTATGTTTGTGAAAGGAAGG 57.547 36.000 0.00 0.00 0.00 3.46
4723 6728 6.434028 TCATCTTATGTTTGTGAAAGGAAGGG 59.566 38.462 0.00 0.00 0.00 3.95
4724 6729 5.947663 TCTTATGTTTGTGAAAGGAAGGGA 58.052 37.500 0.00 0.00 0.00 4.20
4725 6730 6.003950 TCTTATGTTTGTGAAAGGAAGGGAG 58.996 40.000 0.00 0.00 0.00 4.30
4726 6731 3.662759 TGTTTGTGAAAGGAAGGGAGT 57.337 42.857 0.00 0.00 0.00 3.85
4727 6732 4.781775 TGTTTGTGAAAGGAAGGGAGTA 57.218 40.909 0.00 0.00 0.00 2.59
4728 6733 4.714632 TGTTTGTGAAAGGAAGGGAGTAG 58.285 43.478 0.00 0.00 0.00 2.57
4729 6734 4.410883 TGTTTGTGAAAGGAAGGGAGTAGA 59.589 41.667 0.00 0.00 0.00 2.59
4730 6735 5.104277 TGTTTGTGAAAGGAAGGGAGTAGAA 60.104 40.000 0.00 0.00 0.00 2.10
4731 6736 4.891992 TGTGAAAGGAAGGGAGTAGAAG 57.108 45.455 0.00 0.00 0.00 2.85
4732 6737 4.489737 TGTGAAAGGAAGGGAGTAGAAGA 58.510 43.478 0.00 0.00 0.00 2.87
4733 6738 5.094387 TGTGAAAGGAAGGGAGTAGAAGAT 58.906 41.667 0.00 0.00 0.00 2.40
4734 6739 6.261435 TGTGAAAGGAAGGGAGTAGAAGATA 58.739 40.000 0.00 0.00 0.00 1.98
4735 6740 6.729100 TGTGAAAGGAAGGGAGTAGAAGATAA 59.271 38.462 0.00 0.00 0.00 1.75
4736 6741 7.236847 TGTGAAAGGAAGGGAGTAGAAGATAAA 59.763 37.037 0.00 0.00 0.00 1.40
4737 6742 8.101419 GTGAAAGGAAGGGAGTAGAAGATAAAA 58.899 37.037 0.00 0.00 0.00 1.52
4738 6743 8.836735 TGAAAGGAAGGGAGTAGAAGATAAAAT 58.163 33.333 0.00 0.00 0.00 1.82
4801 6806 9.874205 TGATAGGGATTATTTTGCTTTTCTTTG 57.126 29.630 0.00 0.00 0.00 2.77
4848 6853 9.647918 AAACAGGAGTTAGTCTGATATCTATGA 57.352 33.333 3.98 0.00 36.84 2.15
4849 6854 9.647918 AACAGGAGTTAGTCTGATATCTATGAA 57.352 33.333 3.98 0.00 35.85 2.57
4850 6855 9.647918 ACAGGAGTTAGTCTGATATCTATGAAA 57.352 33.333 3.98 0.00 35.20 2.69
4859 6864 8.932610 AGTCTGATATCTATGAAAATGACCACT 58.067 33.333 3.98 0.00 0.00 4.00
4860 6865 9.553064 GTCTGATATCTATGAAAATGACCACTT 57.447 33.333 3.98 0.00 0.00 3.16
4865 6870 7.881775 ATCTATGAAAATGACCACTTTACCC 57.118 36.000 0.00 0.00 0.00 3.69
4866 6871 6.184789 TCTATGAAAATGACCACTTTACCCC 58.815 40.000 0.00 0.00 0.00 4.95
4867 6872 4.463050 TGAAAATGACCACTTTACCCCT 57.537 40.909 0.00 0.00 0.00 4.79
4868 6873 4.403734 TGAAAATGACCACTTTACCCCTC 58.596 43.478 0.00 0.00 0.00 4.30
4869 6874 3.451402 AAATGACCACTTTACCCCTCC 57.549 47.619 0.00 0.00 0.00 4.30
4870 6875 1.296002 ATGACCACTTTACCCCTCCC 58.704 55.000 0.00 0.00 0.00 4.30
4871 6876 0.195096 TGACCACTTTACCCCTCCCT 59.805 55.000 0.00 0.00 0.00 4.20
4872 6877 1.369403 GACCACTTTACCCCTCCCTT 58.631 55.000 0.00 0.00 0.00 3.95
4873 6878 1.281287 GACCACTTTACCCCTCCCTTC 59.719 57.143 0.00 0.00 0.00 3.46
4874 6879 1.132168 ACCACTTTACCCCTCCCTTCT 60.132 52.381 0.00 0.00 0.00 2.85
4875 6880 1.993301 CCACTTTACCCCTCCCTTCTT 59.007 52.381 0.00 0.00 0.00 2.52
4876 6881 2.026169 CCACTTTACCCCTCCCTTCTTC 60.026 54.545 0.00 0.00 0.00 2.87
4877 6882 2.026169 CACTTTACCCCTCCCTTCTTCC 60.026 54.545 0.00 0.00 0.00 3.46
4878 6883 2.157833 ACTTTACCCCTCCCTTCTTCCT 60.158 50.000 0.00 0.00 0.00 3.36
4879 6884 2.265526 TTACCCCTCCCTTCTTCCTC 57.734 55.000 0.00 0.00 0.00 3.71
4880 6885 0.342313 TACCCCTCCCTTCTTCCTCC 59.658 60.000 0.00 0.00 0.00 4.30
4881 6886 1.694525 CCCCTCCCTTCTTCCTCCC 60.695 68.421 0.00 0.00 0.00 4.30
4882 6887 1.082954 CCCTCCCTTCTTCCTCCCA 59.917 63.158 0.00 0.00 0.00 4.37
4883 6888 0.550147 CCCTCCCTTCTTCCTCCCAA 60.550 60.000 0.00 0.00 0.00 4.12
4884 6889 1.372501 CCTCCCTTCTTCCTCCCAAA 58.627 55.000 0.00 0.00 0.00 3.28
4885 6890 1.925959 CCTCCCTTCTTCCTCCCAAAT 59.074 52.381 0.00 0.00 0.00 2.32
4886 6891 2.092158 CCTCCCTTCTTCCTCCCAAATC 60.092 54.545 0.00 0.00 0.00 2.17
4887 6892 1.923148 TCCCTTCTTCCTCCCAAATCC 59.077 52.381 0.00 0.00 0.00 3.01
4888 6893 1.925959 CCCTTCTTCCTCCCAAATCCT 59.074 52.381 0.00 0.00 0.00 3.24
4889 6894 2.092158 CCCTTCTTCCTCCCAAATCCTC 60.092 54.545 0.00 0.00 0.00 3.71
4890 6895 2.849318 CCTTCTTCCTCCCAAATCCTCT 59.151 50.000 0.00 0.00 0.00 3.69
4891 6896 3.118075 CCTTCTTCCTCCCAAATCCTCTC 60.118 52.174 0.00 0.00 0.00 3.20
4892 6897 2.482494 TCTTCCTCCCAAATCCTCTCC 58.518 52.381 0.00 0.00 0.00 3.71
4893 6898 2.046447 TCTTCCTCCCAAATCCTCTCCT 59.954 50.000 0.00 0.00 0.00 3.69
4894 6899 2.182516 TCCTCCCAAATCCTCTCCTC 57.817 55.000 0.00 0.00 0.00 3.71
4895 6900 1.653918 TCCTCCCAAATCCTCTCCTCT 59.346 52.381 0.00 0.00 0.00 3.69
4896 6901 2.046292 CCTCCCAAATCCTCTCCTCTC 58.954 57.143 0.00 0.00 0.00 3.20
4897 6902 2.046292 CTCCCAAATCCTCTCCTCTCC 58.954 57.143 0.00 0.00 0.00 3.71
4898 6903 1.653918 TCCCAAATCCTCTCCTCTCCT 59.346 52.381 0.00 0.00 0.00 3.69
4899 6904 2.046292 CCCAAATCCTCTCCTCTCCTC 58.954 57.143 0.00 0.00 0.00 3.71
4900 6905 2.360209 CCCAAATCCTCTCCTCTCCTCT 60.360 54.545 0.00 0.00 0.00 3.69
4901 6906 2.965147 CCAAATCCTCTCCTCTCCTCTC 59.035 54.545 0.00 0.00 0.00 3.20
4902 6907 2.965147 CAAATCCTCTCCTCTCCTCTCC 59.035 54.545 0.00 0.00 0.00 3.71
4903 6908 0.771127 ATCCTCTCCTCTCCTCTCCG 59.229 60.000 0.00 0.00 0.00 4.63
4904 6909 1.150536 CCTCTCCTCTCCTCTCCGG 59.849 68.421 0.00 0.00 0.00 5.14
4905 6910 1.641552 CCTCTCCTCTCCTCTCCGGT 61.642 65.000 0.00 0.00 0.00 5.28
4906 6911 0.179029 CTCTCCTCTCCTCTCCGGTC 60.179 65.000 0.00 0.00 0.00 4.79
4907 6912 0.914902 TCTCCTCTCCTCTCCGGTCA 60.915 60.000 0.00 0.00 0.00 4.02
4908 6913 0.750182 CTCCTCTCCTCTCCGGTCAC 60.750 65.000 0.00 0.00 0.00 3.67
4909 6914 2.115911 CCTCTCCTCTCCGGTCACG 61.116 68.421 0.00 0.00 40.55 4.35
4920 6925 3.845259 GGTCACGGCTCCGGCATA 61.845 66.667 13.31 0.00 44.69 3.14
4921 6926 2.585247 GTCACGGCTCCGGCATAC 60.585 66.667 13.31 1.64 44.69 2.39
4922 6927 3.845259 TCACGGCTCCGGCATACC 61.845 66.667 13.31 0.00 44.69 2.73
4932 6937 4.203076 GGCATACCGGTCGACGCT 62.203 66.667 12.40 0.00 42.52 5.07
4933 6938 2.654404 GCATACCGGTCGACGCTC 60.654 66.667 12.40 0.00 42.52 5.03
4934 6939 2.352001 CATACCGGTCGACGCTCG 60.352 66.667 12.40 7.61 42.52 5.03
4940 6945 4.570663 GGTCGACGCTCGGGGATG 62.571 72.222 9.92 0.00 40.88 3.51
4941 6946 3.515286 GTCGACGCTCGGGGATGA 61.515 66.667 0.00 0.00 40.88 2.92
4942 6947 3.209812 TCGACGCTCGGGGATGAG 61.210 66.667 7.39 0.00 40.88 2.90
4943 6948 3.209812 CGACGCTCGGGGATGAGA 61.210 66.667 0.00 0.00 38.28 3.27
4944 6949 2.771639 CGACGCTCGGGGATGAGAA 61.772 63.158 0.00 0.00 38.28 2.87
4945 6950 1.066587 GACGCTCGGGGATGAGAAG 59.933 63.158 0.00 0.00 38.28 2.85
4946 6951 2.279784 CGCTCGGGGATGAGAAGC 60.280 66.667 0.00 0.00 38.28 3.86
4947 6952 2.903357 GCTCGGGGATGAGAAGCA 59.097 61.111 0.00 0.00 38.28 3.91
4948 6953 1.227497 GCTCGGGGATGAGAAGCAG 60.227 63.158 0.00 0.00 38.28 4.24
4949 6954 1.227497 CTCGGGGATGAGAAGCAGC 60.227 63.158 0.00 0.00 38.28 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 6.389906 CACGAAAAATTGGGAATCTAGCTTT 58.610 36.000 0.00 0.00 0.00 3.51
11 12 5.622233 GCACGAAAAATTGGGAATCTAGCTT 60.622 40.000 0.00 0.00 0.00 3.74
30 31 3.126858 GCACTTCATCCAATTTAGCACGA 59.873 43.478 0.00 0.00 0.00 4.35
69 71 3.457610 AACACAGCTTGAAACAATGGG 57.542 42.857 3.37 0.00 0.00 4.00
86 88 4.927267 ACTGAATCTGAATGGGGTAACA 57.073 40.909 0.00 0.00 39.74 2.41
124 132 8.945057 TGATTCTGAATTACAATTTCGTGATGA 58.055 29.630 4.11 0.00 0.00 2.92
230 952 1.203928 GACTGATGCTGGAATCGTCG 58.796 55.000 0.00 0.00 0.00 5.12
236 962 1.005097 AGCCATTGACTGATGCTGGAA 59.995 47.619 0.00 0.00 0.00 3.53
389 1157 6.058833 TGTGACCAGTTAAATTGCAGTAAGA 58.941 36.000 0.00 0.00 0.00 2.10
432 1203 0.100325 TTGCAGGAAAACGTGTGCAG 59.900 50.000 8.99 0.00 46.09 4.41
433 1204 0.528017 TTTGCAGGAAAACGTGTGCA 59.472 45.000 5.89 5.89 44.01 4.57
434 1205 1.587946 CTTTTGCAGGAAAACGTGTGC 59.412 47.619 0.00 0.00 36.42 4.57
438 1209 4.173256 CAAAGACTTTTGCAGGAAAACGT 58.827 39.130 0.00 0.00 37.47 3.99
439 1210 4.173256 ACAAAGACTTTTGCAGGAAAACG 58.827 39.130 0.00 0.00 46.05 3.60
440 1211 5.063438 GGAACAAAGACTTTTGCAGGAAAAC 59.937 40.000 0.00 0.00 46.05 2.43
473 1244 2.364002 TGGTGCAAGGGTAAAGAAAAGC 59.636 45.455 0.00 0.00 0.00 3.51
492 1263 3.108144 CAGACTTTTGCAAGAAACGTGG 58.892 45.455 0.00 0.00 33.72 4.94
610 1409 2.525629 TTGGAGCCTGGACGACCA 60.526 61.111 6.42 6.42 44.76 4.02
612 1411 2.047179 GGTTGGAGCCTGGACGAC 60.047 66.667 0.00 0.00 0.00 4.34
776 1585 2.418910 CCTGGCGGTCGATCTCAGT 61.419 63.158 12.70 0.00 0.00 3.41
884 1694 2.113774 TGCTGCAGTTGACCCCTG 59.886 61.111 16.64 0.00 0.00 4.45
1111 1921 1.207329 ACTGGTAGCGCCTAAGGAAAG 59.793 52.381 2.29 0.00 38.35 2.62
1209 2019 6.499234 TTACGTGACAGTATAAGTGTGCTA 57.501 37.500 0.00 0.00 30.64 3.49
1291 2105 8.053963 AGTGAAAGAATTCATCTGGAGATCAAT 58.946 33.333 8.44 0.00 46.67 2.57
1344 2158 4.019860 AGGCAAAGAAATCTGAGAGCTGTA 60.020 41.667 0.00 0.00 0.00 2.74
1473 2287 7.436080 AGCAATTTTGTAATGTGACTCAAAGTG 59.564 33.333 0.00 0.00 32.67 3.16
1495 2309 5.764686 TGAAACTTAGATCAAGCTCAAGCAA 59.235 36.000 4.59 0.00 45.16 3.91
1637 2485 4.415512 CCAGGATTAGGGAATGGAGGTTTA 59.584 45.833 0.00 0.00 32.55 2.01
1997 2846 8.682936 AAGTGAAGTCAGATTAACAAGATTGT 57.317 30.769 0.00 0.00 44.72 2.71
2013 2862 4.579869 TGCTTTCCATCCTAAGTGAAGTC 58.420 43.478 0.00 0.00 0.00 3.01
2337 3186 0.179092 GTTCCGATGGTAGTTCCCCG 60.179 60.000 0.00 0.00 34.77 5.73
2421 3270 1.066716 TGCCATCTTGCTGGAATTTGC 60.067 47.619 0.00 0.00 38.69 3.68
2493 3371 4.020543 GGTACCCAAATAATTCAGGCACA 58.979 43.478 0.00 0.00 0.00 4.57
2764 3642 2.659428 GGGCAGAAACCATAGCAAGAT 58.341 47.619 0.00 0.00 0.00 2.40
2835 3713 8.141268 TGGGTAACAAAATGAAACATCTTCTTC 58.859 33.333 0.00 0.00 39.74 2.87
2931 3810 5.940470 CCAGTTGGTAGCTTTAAGAATGTCT 59.060 40.000 0.00 0.00 0.00 3.41
3288 4168 2.179547 CACATCCGCCGCTATGCAA 61.180 57.895 0.00 0.00 0.00 4.08
3300 4180 1.093159 CAAGAGCAGAAGCCACATCC 58.907 55.000 0.00 0.00 43.56 3.51
3508 4865 5.495640 AGTGGAAATGGAAAAGCAAAACAA 58.504 33.333 0.00 0.00 0.00 2.83
3509 4866 5.096443 AGTGGAAATGGAAAAGCAAAACA 57.904 34.783 0.00 0.00 0.00 2.83
3578 4937 4.081309 CCCATCCCGTACTCTACAAAGAAA 60.081 45.833 0.00 0.00 0.00 2.52
3586 4945 1.544093 CGTAGCCCATCCCGTACTCTA 60.544 57.143 0.00 0.00 0.00 2.43
3666 5025 6.173339 ACATATCATCAGTTGGTCGTTTTCT 58.827 36.000 0.00 0.00 0.00 2.52
3767 5128 1.848388 TGATGCTCCTCATGTCCCATT 59.152 47.619 0.00 0.00 35.05 3.16
4289 6280 6.968263 TTTATCATGGACCAAAAGTTGACA 57.032 33.333 0.00 0.00 0.00 3.58
4456 6456 4.546570 GAAACACATTTTCCTTCTTCCCG 58.453 43.478 0.00 0.00 0.00 5.14
4462 6462 5.462068 CCCTTTTCGAAACACATTTTCCTTC 59.538 40.000 10.79 0.00 0.00 3.46
4478 6479 4.458989 TCTGAAATGGATGTTCCCTTTTCG 59.541 41.667 13.15 9.71 45.68 3.46
4536 6540 4.846779 TCCTTTCATTTCGGGTTTTCAG 57.153 40.909 0.00 0.00 0.00 3.02
4543 6547 5.596845 TCTTTGTTTTCCTTTCATTTCGGG 58.403 37.500 0.00 0.00 0.00 5.14
4550 6554 5.451242 CCGTCCATTCTTTGTTTTCCTTTCA 60.451 40.000 0.00 0.00 0.00 2.69
4557 6561 3.292460 TGGTCCGTCCATTCTTTGTTTT 58.708 40.909 0.00 0.00 41.93 2.43
4611 6616 7.710907 GTGCCTATATACAGTCAACTCATGAAA 59.289 37.037 0.00 0.00 40.50 2.69
4614 6619 6.515832 TGTGCCTATATACAGTCAACTCATG 58.484 40.000 0.00 0.00 0.00 3.07
4615 6620 6.731292 TGTGCCTATATACAGTCAACTCAT 57.269 37.500 0.00 0.00 0.00 2.90
4638 6643 6.454795 AGTGAGTGAACAAACACACAAAAAT 58.545 32.000 7.47 0.00 42.12 1.82
4643 6648 5.703592 AGTAAAGTGAGTGAACAAACACACA 59.296 36.000 7.47 0.00 42.12 3.72
4647 6652 4.569162 CGGAGTAAAGTGAGTGAACAAACA 59.431 41.667 0.00 0.00 0.00 2.83
4692 6697 9.695526 CCTTTCACAAACATAAGATGATTTGAA 57.304 29.630 15.25 9.85 36.11 2.69
4693 6698 9.076781 TCCTTTCACAAACATAAGATGATTTGA 57.923 29.630 15.25 6.16 36.11 2.69
4694 6699 9.695526 TTCCTTTCACAAACATAAGATGATTTG 57.304 29.630 10.36 10.36 37.33 2.32
4695 6700 9.918630 CTTCCTTTCACAAACATAAGATGATTT 57.081 29.630 0.00 0.00 0.00 2.17
4696 6701 8.526147 CCTTCCTTTCACAAACATAAGATGATT 58.474 33.333 0.00 0.00 0.00 2.57
4697 6702 7.123247 CCCTTCCTTTCACAAACATAAGATGAT 59.877 37.037 0.00 0.00 0.00 2.45
4698 6703 6.434028 CCCTTCCTTTCACAAACATAAGATGA 59.566 38.462 0.00 0.00 0.00 2.92
4699 6704 6.434028 TCCCTTCCTTTCACAAACATAAGATG 59.566 38.462 0.00 0.00 0.00 2.90
4700 6705 6.552008 TCCCTTCCTTTCACAAACATAAGAT 58.448 36.000 0.00 0.00 0.00 2.40
4701 6706 5.947663 TCCCTTCCTTTCACAAACATAAGA 58.052 37.500 0.00 0.00 0.00 2.10
4702 6707 5.770162 ACTCCCTTCCTTTCACAAACATAAG 59.230 40.000 0.00 0.00 0.00 1.73
4703 6708 5.701224 ACTCCCTTCCTTTCACAAACATAA 58.299 37.500 0.00 0.00 0.00 1.90
4704 6709 5.319043 ACTCCCTTCCTTTCACAAACATA 57.681 39.130 0.00 0.00 0.00 2.29
4705 6710 4.184649 ACTCCCTTCCTTTCACAAACAT 57.815 40.909 0.00 0.00 0.00 2.71
4706 6711 3.662759 ACTCCCTTCCTTTCACAAACA 57.337 42.857 0.00 0.00 0.00 2.83
4707 6712 4.969484 TCTACTCCCTTCCTTTCACAAAC 58.031 43.478 0.00 0.00 0.00 2.93
4708 6713 5.368523 TCTTCTACTCCCTTCCTTTCACAAA 59.631 40.000 0.00 0.00 0.00 2.83
4709 6714 4.905456 TCTTCTACTCCCTTCCTTTCACAA 59.095 41.667 0.00 0.00 0.00 3.33
4710 6715 4.489737 TCTTCTACTCCCTTCCTTTCACA 58.510 43.478 0.00 0.00 0.00 3.58
4711 6716 5.685520 ATCTTCTACTCCCTTCCTTTCAC 57.314 43.478 0.00 0.00 0.00 3.18
4712 6717 7.808279 TTTATCTTCTACTCCCTTCCTTTCA 57.192 36.000 0.00 0.00 0.00 2.69
4775 6780 9.874205 CAAAGAAAAGCAAAATAATCCCTATCA 57.126 29.630 0.00 0.00 0.00 2.15
4822 6827 9.647918 TCATAGATATCAGACTAACTCCTGTTT 57.352 33.333 5.32 0.00 37.59 2.83
4823 6828 9.647918 TTCATAGATATCAGACTAACTCCTGTT 57.352 33.333 5.32 0.00 39.98 3.16
4824 6829 9.647918 TTTCATAGATATCAGACTAACTCCTGT 57.352 33.333 5.32 0.00 0.00 4.00
4833 6838 8.932610 AGTGGTCATTTTCATAGATATCAGACT 58.067 33.333 5.32 0.00 0.00 3.24
4834 6839 9.553064 AAGTGGTCATTTTCATAGATATCAGAC 57.447 33.333 5.32 0.00 0.00 3.51
4839 6844 9.574516 GGGTAAAGTGGTCATTTTCATAGATAT 57.425 33.333 0.00 0.00 0.00 1.63
4840 6845 7.996644 GGGGTAAAGTGGTCATTTTCATAGATA 59.003 37.037 0.00 0.00 0.00 1.98
4841 6846 6.833933 GGGGTAAAGTGGTCATTTTCATAGAT 59.166 38.462 0.00 0.00 0.00 1.98
4842 6847 6.011981 AGGGGTAAAGTGGTCATTTTCATAGA 60.012 38.462 0.00 0.00 0.00 1.98
4843 6848 6.187682 AGGGGTAAAGTGGTCATTTTCATAG 58.812 40.000 0.00 0.00 0.00 2.23
4844 6849 6.147437 AGGGGTAAAGTGGTCATTTTCATA 57.853 37.500 0.00 0.00 0.00 2.15
4845 6850 5.010708 AGGGGTAAAGTGGTCATTTTCAT 57.989 39.130 0.00 0.00 0.00 2.57
4846 6851 4.403734 GAGGGGTAAAGTGGTCATTTTCA 58.596 43.478 0.00 0.00 0.00 2.69
4847 6852 3.762288 GGAGGGGTAAAGTGGTCATTTTC 59.238 47.826 0.00 0.00 0.00 2.29
4848 6853 3.501568 GGGAGGGGTAAAGTGGTCATTTT 60.502 47.826 0.00 0.00 0.00 1.82
4849 6854 2.042569 GGGAGGGGTAAAGTGGTCATTT 59.957 50.000 0.00 0.00 0.00 2.32
4850 6855 1.639108 GGGAGGGGTAAAGTGGTCATT 59.361 52.381 0.00 0.00 0.00 2.57
4851 6856 1.203570 AGGGAGGGGTAAAGTGGTCAT 60.204 52.381 0.00 0.00 0.00 3.06
4852 6857 0.195096 AGGGAGGGGTAAAGTGGTCA 59.805 55.000 0.00 0.00 0.00 4.02
4853 6858 1.281287 GAAGGGAGGGGTAAAGTGGTC 59.719 57.143 0.00 0.00 0.00 4.02
4854 6859 1.132168 AGAAGGGAGGGGTAAAGTGGT 60.132 52.381 0.00 0.00 0.00 4.16
4855 6860 1.670059 AGAAGGGAGGGGTAAAGTGG 58.330 55.000 0.00 0.00 0.00 4.00
4856 6861 2.026169 GGAAGAAGGGAGGGGTAAAGTG 60.026 54.545 0.00 0.00 0.00 3.16
4857 6862 2.157833 AGGAAGAAGGGAGGGGTAAAGT 60.158 50.000 0.00 0.00 0.00 2.66
4858 6863 2.506231 GAGGAAGAAGGGAGGGGTAAAG 59.494 54.545 0.00 0.00 0.00 1.85
4859 6864 2.558974 GAGGAAGAAGGGAGGGGTAAA 58.441 52.381 0.00 0.00 0.00 2.01
4860 6865 1.274242 GGAGGAAGAAGGGAGGGGTAA 60.274 57.143 0.00 0.00 0.00 2.85
4861 6866 0.342313 GGAGGAAGAAGGGAGGGGTA 59.658 60.000 0.00 0.00 0.00 3.69
4862 6867 1.083141 GGAGGAAGAAGGGAGGGGT 59.917 63.158 0.00 0.00 0.00 4.95
4863 6868 1.694525 GGGAGGAAGAAGGGAGGGG 60.695 68.421 0.00 0.00 0.00 4.79
4864 6869 0.550147 TTGGGAGGAAGAAGGGAGGG 60.550 60.000 0.00 0.00 0.00 4.30
4865 6870 1.372501 TTTGGGAGGAAGAAGGGAGG 58.627 55.000 0.00 0.00 0.00 4.30
4866 6871 2.092158 GGATTTGGGAGGAAGAAGGGAG 60.092 54.545 0.00 0.00 0.00 4.30
4867 6872 1.923148 GGATTTGGGAGGAAGAAGGGA 59.077 52.381 0.00 0.00 0.00 4.20
4868 6873 1.925959 AGGATTTGGGAGGAAGAAGGG 59.074 52.381 0.00 0.00 0.00 3.95
4869 6874 2.849318 AGAGGATTTGGGAGGAAGAAGG 59.151 50.000 0.00 0.00 0.00 3.46
4870 6875 3.118075 GGAGAGGATTTGGGAGGAAGAAG 60.118 52.174 0.00 0.00 0.00 2.85
4871 6876 2.846827 GGAGAGGATTTGGGAGGAAGAA 59.153 50.000 0.00 0.00 0.00 2.52
4872 6877 2.046447 AGGAGAGGATTTGGGAGGAAGA 59.954 50.000 0.00 0.00 0.00 2.87
4873 6878 2.437651 GAGGAGAGGATTTGGGAGGAAG 59.562 54.545 0.00 0.00 0.00 3.46
4874 6879 2.046447 AGAGGAGAGGATTTGGGAGGAA 59.954 50.000 0.00 0.00 0.00 3.36
4875 6880 1.653918 AGAGGAGAGGATTTGGGAGGA 59.346 52.381 0.00 0.00 0.00 3.71
4876 6881 2.046292 GAGAGGAGAGGATTTGGGAGG 58.954 57.143 0.00 0.00 0.00 4.30
4877 6882 2.046292 GGAGAGGAGAGGATTTGGGAG 58.954 57.143 0.00 0.00 0.00 4.30
4878 6883 1.653918 AGGAGAGGAGAGGATTTGGGA 59.346 52.381 0.00 0.00 0.00 4.37
4879 6884 2.046292 GAGGAGAGGAGAGGATTTGGG 58.954 57.143 0.00 0.00 0.00 4.12
4880 6885 2.965147 GAGAGGAGAGGAGAGGATTTGG 59.035 54.545 0.00 0.00 0.00 3.28
4881 6886 2.965147 GGAGAGGAGAGGAGAGGATTTG 59.035 54.545 0.00 0.00 0.00 2.32
4882 6887 2.424234 CGGAGAGGAGAGGAGAGGATTT 60.424 54.545 0.00 0.00 0.00 2.17
4883 6888 1.144913 CGGAGAGGAGAGGAGAGGATT 59.855 57.143 0.00 0.00 0.00 3.01
4884 6889 0.771127 CGGAGAGGAGAGGAGAGGAT 59.229 60.000 0.00 0.00 0.00 3.24
4885 6890 1.349542 CCGGAGAGGAGAGGAGAGGA 61.350 65.000 0.00 0.00 45.00 3.71
4886 6891 1.150536 CCGGAGAGGAGAGGAGAGG 59.849 68.421 0.00 0.00 45.00 3.69
4887 6892 0.179029 GACCGGAGAGGAGAGGAGAG 60.179 65.000 9.46 0.00 45.00 3.20
4888 6893 0.914902 TGACCGGAGAGGAGAGGAGA 60.915 60.000 9.46 0.00 45.00 3.71
4889 6894 0.750182 GTGACCGGAGAGGAGAGGAG 60.750 65.000 9.46 0.00 45.00 3.69
4890 6895 1.303615 GTGACCGGAGAGGAGAGGA 59.696 63.158 9.46 0.00 45.00 3.71
4891 6896 2.115911 CGTGACCGGAGAGGAGAGG 61.116 68.421 9.46 0.00 45.00 3.69
4892 6897 3.503749 CGTGACCGGAGAGGAGAG 58.496 66.667 9.46 0.00 45.00 3.20
4903 6908 3.845259 TATGCCGGAGCCGTGACC 61.845 66.667 5.05 0.00 38.69 4.02
4904 6909 2.585247 GTATGCCGGAGCCGTGAC 60.585 66.667 5.05 0.00 38.69 3.67
4905 6910 3.845259 GGTATGCCGGAGCCGTGA 61.845 66.667 5.05 0.00 38.69 4.35
4923 6928 4.570663 CATCCCCGAGCGTCGACC 62.571 72.222 10.58 2.76 43.74 4.79
4924 6929 3.471244 CTCATCCCCGAGCGTCGAC 62.471 68.421 5.18 5.18 43.74 4.20
4925 6930 3.209812 CTCATCCCCGAGCGTCGA 61.210 66.667 0.00 0.00 43.74 4.20
4926 6931 2.669808 CTTCTCATCCCCGAGCGTCG 62.670 65.000 0.00 0.00 40.07 5.12
4927 6932 1.066587 CTTCTCATCCCCGAGCGTC 59.933 63.158 0.00 0.00 32.75 5.19
4928 6933 3.082579 GCTTCTCATCCCCGAGCGT 62.083 63.158 0.00 0.00 32.75 5.07
4929 6934 2.279784 GCTTCTCATCCCCGAGCG 60.280 66.667 0.00 0.00 32.75 5.03
4930 6935 1.227497 CTGCTTCTCATCCCCGAGC 60.227 63.158 0.00 0.00 32.75 5.03
4931 6936 1.227497 GCTGCTTCTCATCCCCGAG 60.227 63.158 0.00 0.00 0.00 4.63
4932 6937 2.735772 GGCTGCTTCTCATCCCCGA 61.736 63.158 0.00 0.00 0.00 5.14
4933 6938 2.203126 GGCTGCTTCTCATCCCCG 60.203 66.667 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.