Multiple sequence alignment - TraesCS2B01G080100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G080100 chr2B 100.000 4599 0 0 690 5288 44746221 44741623 0.000000e+00 8493.0
1 TraesCS2B01G080100 chr2B 95.794 4613 134 25 691 5283 45672273 45676845 0.000000e+00 7389.0
2 TraesCS2B01G080100 chr2B 87.055 4102 435 48 798 4856 45549834 45553882 0.000000e+00 4545.0
3 TraesCS2B01G080100 chr2B 100.000 493 0 0 1 493 44746910 44746418 0.000000e+00 911.0
4 TraesCS2B01G080100 chr2B 90.132 456 17 7 14 446 45671634 45672084 7.690000e-158 568.0
5 TraesCS2B01G080100 chr2B 90.574 244 17 3 5 242 45033945 45033702 8.550000e-83 318.0
6 TraesCS2B01G080100 chr2B 84.937 239 13 7 18 250 45549294 45549515 2.480000e-53 220.0
7 TraesCS2B01G080100 chr2D 88.841 4418 387 50 876 5259 27995589 27991244 0.000000e+00 5330.0
8 TraesCS2B01G080100 chr2D 89.969 3529 312 26 798 4302 27953500 27949990 0.000000e+00 4518.0
9 TraesCS2B01G080100 chr2D 85.995 3413 449 17 988 4382 27982195 27978794 0.000000e+00 3627.0
10 TraesCS2B01G080100 chr2D 86.799 3083 365 25 799 3863 27935681 27932623 0.000000e+00 3400.0
11 TraesCS2B01G080100 chr2D 89.114 1580 165 5 2699 4274 27965863 27964287 0.000000e+00 1958.0
12 TraesCS2B01G080100 chr2D 89.310 449 20 9 14 439 27996396 27995953 6.030000e-149 538.0
13 TraesCS2B01G080100 chr2D 93.450 229 13 2 4403 4629 27949986 27949758 6.560000e-89 339.0
14 TraesCS2B01G080100 chr2D 83.462 260 18 10 14 250 27968184 27967927 8.920000e-53 219.0
15 TraesCS2B01G080100 chr2D 90.741 54 4 1 441 493 27995930 27995877 2.640000e-08 71.3
16 TraesCS2B01G080100 chr2D 94.737 38 1 1 271 308 27995806 27995770 2.060000e-04 58.4
17 TraesCS2B01G080100 chr2A 88.452 3611 373 21 798 4382 30179256 30175664 0.000000e+00 4318.0
18 TraesCS2B01G080100 chr2A 84.041 3697 508 48 727 4382 30171082 30167427 0.000000e+00 3483.0
19 TraesCS2B01G080100 chr2A 88.179 2208 246 8 1400 3595 30157762 30155558 0.000000e+00 2617.0
20 TraesCS2B01G080100 chr2A 86.311 431 43 13 4833 5258 30173934 30173515 6.240000e-124 455.0
21 TraesCS2B01G080100 chr2A 85.122 410 61 0 3896 4305 30155148 30154739 2.280000e-113 420.0
22 TraesCS2B01G080100 chr2A 84.118 340 35 11 4519 4840 30175247 30174909 1.430000e-80 311.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G080100 chr2B 44741623 44746910 5287 True 4702.000 8493 100.00000 1 5288 2 chr2B.!!$R2 5287
1 TraesCS2B01G080100 chr2B 45671634 45676845 5211 False 3978.500 7389 92.96300 14 5283 2 chr2B.!!$F2 5269
2 TraesCS2B01G080100 chr2B 45549294 45553882 4588 False 2382.500 4545 85.99600 18 4856 2 chr2B.!!$F1 4838
3 TraesCS2B01G080100 chr2D 27978794 27982195 3401 True 3627.000 3627 85.99500 988 4382 1 chr2D.!!$R2 3394
4 TraesCS2B01G080100 chr2D 27932623 27935681 3058 True 3400.000 3400 86.79900 799 3863 1 chr2D.!!$R1 3064
5 TraesCS2B01G080100 chr2D 27949758 27953500 3742 True 2428.500 4518 91.70950 798 4629 2 chr2D.!!$R3 3831
6 TraesCS2B01G080100 chr2D 27991244 27996396 5152 True 1499.425 5330 90.90725 14 5259 4 chr2D.!!$R5 5245
7 TraesCS2B01G080100 chr2D 27964287 27968184 3897 True 1088.500 1958 86.28800 14 4274 2 chr2D.!!$R4 4260
8 TraesCS2B01G080100 chr2A 30167427 30179256 11829 True 2141.750 4318 85.73050 727 5258 4 chr2A.!!$R2 4531
9 TraesCS2B01G080100 chr2A 30154739 30157762 3023 True 1518.500 2617 86.65050 1400 4305 2 chr2A.!!$R1 2905

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
429 533 1.484038 TTTGGGTTGCAGAAGCTGTT 58.516 45.000 0.0 0.0 42.74 3.16 F
1627 1788 1.134699 TCCCAGCTAATCTGTTCAGCG 60.135 52.381 0.0 0.0 41.25 5.18 F
2714 3012 2.289565 GCCTATACCACAGGAAGTTGC 58.710 52.381 0.0 0.0 34.91 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1809 1970 0.036388 TTGCCGGAACTGATCCTGTC 60.036 55.0 5.05 0.0 46.98 3.51 R
3472 3797 2.092211 CGAAATCTACGGTTGAGCACAC 59.908 50.0 0.00 0.0 0.00 3.82 R
4293 13010 0.603569 CTGCTCGACCCACTAGTTGT 59.396 55.0 0.00 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 5.777223 TCTGGTATTATCATGTGGAGAGGAG 59.223 44.000 0.00 0.00 0.00 3.69
51 52 5.467738 TGGTATTATCATGTGGAGAGGAGT 58.532 41.667 0.00 0.00 0.00 3.85
250 274 4.380233 CCTTGATGACTGAATTGGCACTTC 60.380 45.833 10.36 10.36 0.00 3.01
251 275 4.025040 TGATGACTGAATTGGCACTTCT 57.975 40.909 17.05 0.00 0.00 2.85
253 277 3.777106 TGACTGAATTGGCACTTCTCT 57.223 42.857 17.05 3.73 0.00 3.10
429 533 1.484038 TTTGGGTTGCAGAAGCTGTT 58.516 45.000 0.00 0.00 42.74 3.16
488 631 7.996644 ACATAAACCTCTCACAAGTTCCTTTTA 59.003 33.333 0.00 0.00 0.00 1.52
873 1017 2.895404 ACTACCAAGCTAACCAAGACGA 59.105 45.455 0.00 0.00 0.00 4.20
874 1018 3.514309 ACTACCAAGCTAACCAAGACGAT 59.486 43.478 0.00 0.00 0.00 3.73
941 1097 6.478512 TCCACATATATCTAAGCACACACA 57.521 37.500 0.00 0.00 0.00 3.72
1067 1228 3.190118 CACCATGCACTCTTCCTTCTTTC 59.810 47.826 0.00 0.00 0.00 2.62
1098 1259 5.338708 CCTCATATTTCTGTCCTCCAACACT 60.339 44.000 0.00 0.00 0.00 3.55
1188 1349 2.276309 CTGGCATCTCCAAGGACCCC 62.276 65.000 0.00 0.00 46.01 4.95
1416 1577 3.621558 TGAAGAGATAGGTGAGCTTCGA 58.378 45.455 0.00 0.00 38.17 3.71
1474 1635 2.832129 TCAGGTAACATCCCTCTGTCAC 59.168 50.000 0.00 0.00 41.41 3.67
1579 1740 7.658525 AGTTCATCACTCAGTGAGATAATCT 57.341 36.000 26.86 11.84 46.04 2.40
1625 1786 4.412796 TGATCCCAGCTAATCTGTTCAG 57.587 45.455 0.00 0.00 41.25 3.02
1627 1788 1.134699 TCCCAGCTAATCTGTTCAGCG 60.135 52.381 0.00 0.00 41.25 5.18
1734 1895 6.985188 TTTCTCGATCTTACAGGGAATTTG 57.015 37.500 0.00 0.00 0.00 2.32
1735 1896 5.677319 TCTCGATCTTACAGGGAATTTGT 57.323 39.130 0.00 0.00 0.00 2.83
1809 1970 3.066621 TCCTGCTAGCACAAAACAACTTG 59.933 43.478 14.93 0.00 0.00 3.16
1854 2015 5.538849 TGGGTCAAATTCCAAACCTAAAC 57.461 39.130 0.00 0.00 32.22 2.01
1921 2082 2.995939 ACACTGTACAATGCGTCATCAG 59.004 45.455 3.81 0.00 0.00 2.90
2430 2591 4.715534 TCCCATGACAGTTTGGAACTTA 57.284 40.909 0.00 0.00 40.46 2.24
2541 2702 6.322969 AGCTTGATCTTGATGGCAATGAATTA 59.677 34.615 0.00 0.00 32.68 1.40
2658 2819 5.705905 ACTCTTTGGTATTTCTTCCCTTTCG 59.294 40.000 0.00 0.00 0.00 3.46
2714 3012 2.289565 GCCTATACCACAGGAAGTTGC 58.710 52.381 0.00 0.00 34.91 4.17
2830 3128 4.155826 CCCTTCAAATAGAACGCAACATGA 59.844 41.667 0.00 0.00 31.61 3.07
3472 3797 4.201891 GCAATCTGGTTCAAGCTATCACTG 60.202 45.833 0.00 0.00 0.00 3.66
3498 3823 2.426024 CTCAACCGTAGATTTCGAGGGA 59.574 50.000 6.44 0.00 32.14 4.20
3618 3949 0.512952 GCCAGCGGATAAGTATTGCG 59.487 55.000 0.00 0.00 0.00 4.85
3690 4159 6.298361 TCCTTTGATTCACTGTGATCTGAAA 58.702 36.000 11.86 8.05 30.32 2.69
3836 4305 0.460284 ATCGCTCCTGGTAAGTTGCG 60.460 55.000 0.00 0.00 41.52 4.85
3912 4383 7.539366 TGTTTTGTTAGTTTCACAAGCACTTAC 59.461 33.333 0.00 0.00 35.57 2.34
3987 4458 3.177249 GACGTGTACGGCTTCGGC 61.177 66.667 9.40 0.00 45.57 5.54
4102 4573 2.049077 CGAGAGGATCGCTGAGATTG 57.951 55.000 0.00 0.00 45.98 2.67
4293 13010 2.815503 TGTCGAGACCTTGTGATTACGA 59.184 45.455 0.34 0.00 0.00 3.43
4379 13109 6.599244 ACGGTTACTACACTACTGTAATGCTA 59.401 38.462 0.00 0.00 32.24 3.49
4380 13110 7.284034 ACGGTTACTACACTACTGTAATGCTAT 59.716 37.037 0.00 0.00 32.24 2.97
4381 13111 8.777413 CGGTTACTACACTACTGTAATGCTATA 58.223 37.037 0.00 0.00 32.24 1.31
4385 13115 8.624367 ACTACACTACTGTAATGCTATAGGAG 57.376 38.462 1.04 0.00 34.20 3.69
4386 13116 8.219178 ACTACACTACTGTAATGCTATAGGAGT 58.781 37.037 1.04 0.00 40.20 3.85
4389 13119 7.753309 ACTACTGTAATGCTATAGGAGTGAG 57.247 40.000 4.31 3.19 38.61 3.51
4390 13120 6.717540 ACTACTGTAATGCTATAGGAGTGAGG 59.282 42.308 4.31 0.00 38.61 3.86
4391 13121 4.282195 ACTGTAATGCTATAGGAGTGAGGC 59.718 45.833 4.31 0.00 0.00 4.70
4392 13122 4.483950 TGTAATGCTATAGGAGTGAGGCT 58.516 43.478 4.31 0.00 0.00 4.58
4393 13123 4.524714 TGTAATGCTATAGGAGTGAGGCTC 59.475 45.833 7.79 7.79 43.39 4.70
4394 13124 2.755952 TGCTATAGGAGTGAGGCTCA 57.244 50.000 14.43 14.43 45.88 4.26
4395 13125 2.591923 TGCTATAGGAGTGAGGCTCAG 58.408 52.381 19.38 4.51 45.88 3.35
4396 13126 2.175715 TGCTATAGGAGTGAGGCTCAGA 59.824 50.000 19.38 1.34 45.88 3.27
4397 13127 3.226777 GCTATAGGAGTGAGGCTCAGAA 58.773 50.000 19.38 1.98 45.88 3.02
4398 13128 3.831911 GCTATAGGAGTGAGGCTCAGAAT 59.168 47.826 19.38 7.00 45.88 2.40
4399 13129 4.283212 GCTATAGGAGTGAGGCTCAGAATT 59.717 45.833 19.38 7.08 45.88 2.17
4400 13130 4.686191 ATAGGAGTGAGGCTCAGAATTG 57.314 45.455 19.38 0.00 45.88 2.32
4401 13131 1.558756 AGGAGTGAGGCTCAGAATTGG 59.441 52.381 19.38 0.00 45.88 3.16
4402 13132 1.556911 GGAGTGAGGCTCAGAATTGGA 59.443 52.381 19.38 0.00 45.88 3.53
4403 13133 2.172293 GGAGTGAGGCTCAGAATTGGAT 59.828 50.000 19.38 0.00 45.88 3.41
4404 13134 3.389329 GGAGTGAGGCTCAGAATTGGATA 59.611 47.826 19.38 0.00 45.88 2.59
4405 13135 4.041444 GGAGTGAGGCTCAGAATTGGATAT 59.959 45.833 19.38 0.00 45.88 1.63
4406 13136 5.247110 GGAGTGAGGCTCAGAATTGGATATA 59.753 44.000 19.38 0.00 45.88 0.86
4407 13137 6.107901 AGTGAGGCTCAGAATTGGATATAC 57.892 41.667 19.38 0.81 0.00 1.47
4496 13237 1.527034 CATTATGCTATGTGCCCGCT 58.473 50.000 0.00 0.00 42.00 5.52
4504 13245 3.314080 TGCTATGTGCCCGCTAAAATAAC 59.686 43.478 0.00 0.00 42.00 1.89
4643 13388 7.108194 TCTGAGATGCTGATTAGTTCATGTTT 58.892 34.615 0.00 0.00 32.72 2.83
4660 13411 6.577103 TCATGTTTTTGAATAAGTGTTGCCA 58.423 32.000 0.00 0.00 0.00 4.92
4665 13416 9.383519 TGTTTTTGAATAAGTGTTGCCAATTTA 57.616 25.926 0.00 0.00 30.40 1.40
4703 13454 6.182627 AGCCATGAATGTCAAATACTGAAGA 58.817 36.000 0.00 0.00 35.22 2.87
4735 13487 5.543790 ACTTTCAAACCAGATAATTTGGCCT 59.456 36.000 3.32 0.00 39.39 5.19
4937 13705 6.721318 AGAATAGGCAACATAAAGAGGAACA 58.279 36.000 0.00 0.00 41.41 3.18
4941 13709 6.670695 AGGCAACATAAAGAGGAACATTTT 57.329 33.333 0.00 0.00 41.41 1.82
5084 13852 9.804977 ATAGAGAAAATGAGGAAATATGAAGGG 57.195 33.333 0.00 0.00 0.00 3.95
5114 13882 9.447157 AAAAGGAAAACATGTTTGAAATGAGAA 57.553 25.926 23.93 0.00 32.36 2.87
5115 13883 9.447157 AAAGGAAAACATGTTTGAAATGAGAAA 57.553 25.926 23.93 0.00 32.36 2.52
5199 13967 8.840833 TTGTTTTGTAATAGTAGAGTGCATCA 57.159 30.769 0.00 0.00 0.00 3.07
5283 14051 1.222300 TGTACGATGCAACGTGCTTT 58.778 45.000 30.61 9.92 45.31 3.51
5284 14052 2.405172 TGTACGATGCAACGTGCTTTA 58.595 42.857 30.61 13.96 45.31 1.85
5285 14053 2.410392 TGTACGATGCAACGTGCTTTAG 59.590 45.455 30.61 0.00 45.31 1.85
5286 14054 0.165944 ACGATGCAACGTGCTTTAGC 59.834 50.000 21.83 0.00 45.31 3.09
5287 14055 2.470509 ACGATGCAACGTGCTTTAGCA 61.471 47.619 21.83 0.00 45.31 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.092554 TGATTGAATTGTAGGCGTTAGGA 57.907 39.130 0.00 0.00 0.00 2.94
4 5 5.760253 AGATGATTGAATTGTAGGCGTTAGG 59.240 40.000 0.00 0.00 0.00 2.69
5 6 6.293081 CCAGATGATTGAATTGTAGGCGTTAG 60.293 42.308 0.00 0.00 0.00 2.34
7 8 4.336433 CCAGATGATTGAATTGTAGGCGTT 59.664 41.667 0.00 0.00 0.00 4.84
9 10 3.879295 ACCAGATGATTGAATTGTAGGCG 59.121 43.478 0.00 0.00 0.00 5.52
10 11 7.516198 AATACCAGATGATTGAATTGTAGGC 57.484 36.000 0.00 0.00 0.00 3.93
250 274 1.271597 ACTGTAAAGCCCAAGCCAGAG 60.272 52.381 0.00 0.00 41.25 3.35
251 275 0.771127 ACTGTAAAGCCCAAGCCAGA 59.229 50.000 0.00 0.00 41.25 3.86
253 277 1.004277 CCTACTGTAAAGCCCAAGCCA 59.996 52.381 0.00 0.00 41.25 4.75
429 533 7.339212 AGAAAATATGTGCTTGCTATACAACCA 59.661 33.333 0.00 0.00 33.68 3.67
446 550 9.956720 GAGGTTTATGTGGATGAAGAAAATATG 57.043 33.333 0.00 0.00 0.00 1.78
448 552 9.396022 GAGAGGTTTATGTGGATGAAGAAAATA 57.604 33.333 0.00 0.00 0.00 1.40
689 832 9.682298 GTGTTTGTTAAATATTTTGTGTGTGTG 57.318 29.630 5.91 0.00 0.00 3.82
699 842 9.887406 CTAACGGAGTGTGTTTGTTAAATATTT 57.113 29.630 5.89 5.89 45.00 1.40
773 916 2.037251 ACGTGTGCATAAACCAGTCTCT 59.963 45.455 0.00 0.00 0.00 3.10
774 917 2.413837 ACGTGTGCATAAACCAGTCTC 58.586 47.619 0.00 0.00 0.00 3.36
873 1017 8.854614 AAACTTCTATACTTTGACTTCAGCAT 57.145 30.769 0.00 0.00 0.00 3.79
874 1018 7.931407 TGAAACTTCTATACTTTGACTTCAGCA 59.069 33.333 0.00 0.00 0.00 4.41
941 1097 5.574891 AATATTTGTGTGTGTGTGTGTGT 57.425 34.783 0.00 0.00 0.00 3.72
1067 1228 4.103785 AGGACAGAAATATGAGGATGGTGG 59.896 45.833 0.00 0.00 0.00 4.61
1098 1259 4.621510 GCCTGTGCCGATGAGAATATGATA 60.622 45.833 0.00 0.00 0.00 2.15
1188 1349 0.744414 ATGATCCAAGAACACCGGCG 60.744 55.000 0.00 0.00 0.00 6.46
1299 1460 3.782244 GTTCCTGTGAGCTGCGCG 61.782 66.667 0.00 0.00 0.00 6.86
1416 1577 0.613012 GCATCAGGGTTTGGAGGCTT 60.613 55.000 0.00 0.00 37.79 4.35
1474 1635 4.339530 TGTAAGAGATGCAGCTGTACCTAG 59.660 45.833 10.40 0.00 0.00 3.02
1579 1740 5.421056 ACCCAGATAAGTCATTACGTGAGAA 59.579 40.000 0.00 0.00 37.56 2.87
1625 1786 0.318955 AGCAACAAGTTTGGATGCGC 60.319 50.000 0.00 0.00 44.54 6.09
1627 1788 2.514205 ACAGCAACAAGTTTGGATGC 57.486 45.000 13.61 13.61 42.05 3.91
1809 1970 0.036388 TTGCCGGAACTGATCCTGTC 60.036 55.000 5.05 0.00 46.98 3.51
1921 2082 3.680458 GTGCCTAAGCTAAAGAGTGTGAC 59.320 47.826 0.00 0.00 40.80 3.67
2413 2574 5.594317 AGTTGCTTAAGTTCCAAACTGTCAT 59.406 36.000 4.02 0.00 41.91 3.06
2430 2591 9.529325 GAAAGTTTTAGGACAATTAAGTTGCTT 57.471 29.630 0.00 0.00 41.69 3.91
2658 2819 3.517602 GTTTGACAAGTCCAAACCCAAC 58.482 45.455 0.00 0.00 44.42 3.77
2714 3012 4.133078 GAGGCCAAGATTGATCAGGTTAG 58.867 47.826 5.01 0.00 0.00 2.34
2830 3128 3.511477 ACTGAGGAATATACCCGCTGAT 58.489 45.455 10.07 0.00 0.00 2.90
2914 3212 6.074648 TGAAGTTCCCAAAATACTGTGGAAT 58.925 36.000 0.00 0.00 37.43 3.01
2961 3259 4.494484 GCCCTTCCAATTTGTTGTATGAC 58.506 43.478 0.00 0.00 0.00 3.06
3170 3495 9.150348 TCATAACAGTGACAACAACACATATAG 57.850 33.333 0.00 0.00 40.25 1.31
3472 3797 2.092211 CGAAATCTACGGTTGAGCACAC 59.908 50.000 0.00 0.00 0.00 3.82
3708 4177 1.467342 CGTGAGGTCATGTCGTAGTCA 59.533 52.381 0.00 0.00 0.00 3.41
3987 4458 2.202797 ATCGCCAGTAGCAGCACG 60.203 61.111 0.00 0.00 44.04 5.34
4001 4472 3.993234 GCATCGCCGTGAGCATCG 61.993 66.667 0.00 0.00 44.04 3.84
4102 4573 2.158900 CGGATGGCATATGGGGATCTAC 60.159 54.545 0.00 0.00 0.00 2.59
4293 13010 0.603569 CTGCTCGACCCACTAGTTGT 59.396 55.000 0.00 0.00 0.00 3.32
4379 13109 3.390639 CCAATTCTGAGCCTCACTCCTAT 59.609 47.826 0.00 0.00 45.61 2.57
4380 13110 2.768527 CCAATTCTGAGCCTCACTCCTA 59.231 50.000 0.00 0.00 45.61 2.94
4381 13111 1.558756 CCAATTCTGAGCCTCACTCCT 59.441 52.381 0.00 0.00 45.61 3.69
4382 13112 1.556911 TCCAATTCTGAGCCTCACTCC 59.443 52.381 0.00 0.00 45.61 3.85
4383 13113 3.557228 ATCCAATTCTGAGCCTCACTC 57.443 47.619 0.00 0.00 46.45 3.51
4385 13115 6.107901 AGTATATCCAATTCTGAGCCTCAC 57.892 41.667 0.00 0.00 0.00 3.51
4386 13116 6.753913 AAGTATATCCAATTCTGAGCCTCA 57.246 37.500 0.00 0.00 0.00 3.86
4389 13119 9.944376 TGTAATAAGTATATCCAATTCTGAGCC 57.056 33.333 0.00 0.00 0.00 4.70
4562 13306 7.535997 AGTTTTAAAAGAGCTTCAACTTTCGT 58.464 30.769 0.00 0.00 35.66 3.85
4660 13411 8.596293 TCATGGCTCCAAAAGAAGAATTAAATT 58.404 29.630 0.00 0.00 0.00 1.82
4665 13416 6.013984 ACATTCATGGCTCCAAAAGAAGAATT 60.014 34.615 0.00 0.00 0.00 2.17
4703 13454 7.639113 TTATCTGGTTTGAAAGTTGAGTGTT 57.361 32.000 0.00 0.00 0.00 3.32
4735 13487 0.036388 CCGCTTTGAGCCTGGTTAGA 60.036 55.000 0.00 0.00 38.18 2.10
5126 13894 3.475575 TCAACATGCTGCAACAGAACTA 58.524 40.909 6.36 0.00 32.44 2.24
5173 13941 9.448438 TGATGCACTCTACTATTACAAAACAAT 57.552 29.630 0.00 0.00 0.00 2.71
5174 13942 8.840833 TGATGCACTCTACTATTACAAAACAA 57.159 30.769 0.00 0.00 0.00 2.83
5175 13943 8.882736 CATGATGCACTCTACTATTACAAAACA 58.117 33.333 0.00 0.00 0.00 2.83
5176 13944 8.883731 ACATGATGCACTCTACTATTACAAAAC 58.116 33.333 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.