Multiple sequence alignment - TraesCS2B01G079600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G079600 chr2B 100.000 3429 0 0 1 3429 44401995 44405423 0.000000e+00 6333
1 TraesCS2B01G079600 chr2D 86.949 1632 115 50 812 2427 27906024 27907573 0.000000e+00 1744
2 TraesCS2B01G079600 chr2D 85.267 543 56 15 2885 3409 27908010 27908546 3.890000e-149 538
3 TraesCS2B01G079600 chr2D 92.568 148 9 2 2588 2735 27907750 27907895 9.640000e-51 211
4 TraesCS2B01G079600 chr2A 84.154 1666 123 77 811 2427 30130818 30132391 0.000000e+00 1483
5 TraesCS2B01G079600 chr2A 84.903 722 73 24 5 703 30129977 30130685 0.000000e+00 697
6 TraesCS2B01G079600 chr2A 85.152 559 58 18 2866 3409 30132816 30133364 1.800000e-152 549
7 TraesCS2B01G079600 chr7B 80.747 348 48 13 3098 3429 358106906 358106562 1.580000e-63 254


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G079600 chr2B 44401995 44405423 3428 False 6333.000000 6333 100.000000 1 3429 1 chr2B.!!$F1 3428
1 TraesCS2B01G079600 chr2D 27906024 27908546 2522 False 831.000000 1744 88.261333 812 3409 3 chr2D.!!$F1 2597
2 TraesCS2B01G079600 chr2A 30129977 30133364 3387 False 909.666667 1483 84.736333 5 3409 3 chr2A.!!$F1 3404

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 844 0.038892 GTTCGAACTCACCTACGCCA 60.039 55.0 20.97 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2756 2964 0.036022 AGGCTTCAGAGTGGAACAGC 59.964 55.0 0.0 0.0 41.8 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.300233 CGTAGGAGCTTCGGCCATC 60.300 63.158 2.24 0.00 43.01 3.51
30 31 4.162690 GAGCTTCGGCCATCGGGT 62.163 66.667 2.24 0.00 43.01 5.28
100 101 8.875803 TGACATCCAAATACAATTTACTACGAC 58.124 33.333 0.00 0.00 0.00 4.34
107 108 6.690194 ATACAATTTACTACGACTCCGAGT 57.310 37.500 0.00 0.00 39.50 4.18
109 110 5.873732 ACAATTTACTACGACTCCGAGTAC 58.126 41.667 0.00 0.00 39.50 2.73
211 213 6.440010 TCCCATTTATTTCAATGTGTGGATGT 59.560 34.615 0.00 0.00 32.95 3.06
213 215 7.607223 CCCATTTATTTCAATGTGTGGATGTTT 59.393 33.333 0.00 0.00 32.95 2.83
239 242 4.904241 ACTTGCAATAGGAGATGCTATCC 58.096 43.478 0.00 0.00 42.97 2.59
268 273 7.066284 GTCTACGAGTTACCTTACCAAGATACA 59.934 40.741 0.00 0.00 0.00 2.29
270 275 7.886629 ACGAGTTACCTTACCAAGATACATA 57.113 36.000 0.00 0.00 0.00 2.29
301 307 7.989416 TTTCATTACCTTGTTTTACTCCGAT 57.011 32.000 0.00 0.00 0.00 4.18
320 326 0.386858 TTCTAGTGTCTCGTGCGTGC 60.387 55.000 0.00 0.00 0.00 5.34
322 328 0.387367 CTAGTGTCTCGTGCGTGCTT 60.387 55.000 0.00 0.00 0.00 3.91
368 374 5.536554 GCTCAGTGCATATATAACGCATT 57.463 39.130 11.96 6.59 42.31 3.56
388 394 7.804129 ACGCATTATTACGTTACAACATGTTTT 59.196 29.630 8.77 5.26 40.09 2.43
404 412 9.781834 CAACATGTTTTATGTACATATCGGTTT 57.218 29.630 16.16 2.49 34.59 3.27
426 434 1.535028 CGTTTTGCACAGACCAGCATA 59.465 47.619 0.00 0.00 40.94 3.14
427 435 2.665519 CGTTTTGCACAGACCAGCATAC 60.666 50.000 0.00 0.00 40.94 2.39
459 467 7.649705 TGTTGAACACATATTTGTTTACGCATT 59.350 29.630 8.58 0.00 39.88 3.56
460 468 9.119329 GTTGAACACATATTTGTTTACGCATTA 57.881 29.630 8.58 0.00 39.88 1.90
461 469 9.847706 TTGAACACATATTTGTTTACGCATTAT 57.152 25.926 8.58 0.00 39.88 1.28
462 470 9.847706 TGAACACATATTTGTTTACGCATTATT 57.152 25.926 8.58 0.00 39.88 1.40
500 508 2.949177 TGCCATTATAGCATCGGGTT 57.051 45.000 0.00 0.00 34.69 4.11
502 510 2.158682 TGCCATTATAGCATCGGGTTGT 60.159 45.455 0.00 0.00 34.69 3.32
503 511 3.071747 TGCCATTATAGCATCGGGTTGTA 59.928 43.478 0.00 0.00 34.69 2.41
505 513 4.094887 GCCATTATAGCATCGGGTTGTATG 59.905 45.833 0.00 0.00 0.00 2.39
506 514 5.487433 CCATTATAGCATCGGGTTGTATGA 58.513 41.667 0.00 0.00 0.00 2.15
507 515 6.115446 CCATTATAGCATCGGGTTGTATGAT 58.885 40.000 0.00 0.00 0.00 2.45
508 516 6.599244 CCATTATAGCATCGGGTTGTATGATT 59.401 38.462 0.00 0.00 0.00 2.57
510 518 5.947228 ATAGCATCGGGTTGTATGATTTG 57.053 39.130 0.00 0.00 0.00 2.32
512 520 2.948979 GCATCGGGTTGTATGATTTGGA 59.051 45.455 0.00 0.00 0.00 3.53
513 521 3.569701 GCATCGGGTTGTATGATTTGGAT 59.430 43.478 0.00 0.00 0.00 3.41
522 542 8.076178 GGGTTGTATGATTTGGATCTTTAATCG 58.924 37.037 0.00 0.00 32.30 3.34
523 543 8.621286 GGTTGTATGATTTGGATCTTTAATCGT 58.379 33.333 11.60 11.60 32.30 3.73
525 545 7.639039 TGTATGATTTGGATCTTTAATCGTGC 58.361 34.615 14.47 13.78 33.35 5.34
537 557 5.640357 TCTTTAATCGTGCGGTTCTTACATT 59.360 36.000 0.00 0.00 0.00 2.71
540 560 0.179200 CGTGCGGTTCTTACATTGGC 60.179 55.000 0.00 0.00 0.00 4.52
541 561 0.179200 GTGCGGTTCTTACATTGGCG 60.179 55.000 0.00 0.00 0.00 5.69
542 562 0.320858 TGCGGTTCTTACATTGGCGA 60.321 50.000 0.00 0.00 0.00 5.54
558 578 3.531538 TGGCGATACATTCCTCTCAAAC 58.468 45.455 0.00 0.00 0.00 2.93
561 581 2.216488 CGATACATTCCTCTCAAACGCG 59.784 50.000 3.53 3.53 0.00 6.01
562 582 2.736144 TACATTCCTCTCAAACGCGT 57.264 45.000 5.58 5.58 0.00 6.01
564 584 0.366871 CATTCCTCTCAAACGCGTCG 59.633 55.000 14.44 7.35 0.00 5.12
565 585 0.242825 ATTCCTCTCAAACGCGTCGA 59.757 50.000 14.44 11.99 0.00 4.20
567 587 1.801913 CCTCTCAAACGCGTCGAGG 60.802 63.158 28.21 25.67 35.75 4.63
568 588 1.081376 CTCTCAAACGCGTCGAGGT 60.081 57.895 28.21 6.68 0.00 3.85
581 601 4.683334 GAGGTGTGCGCCGTTTGC 62.683 66.667 4.18 0.00 0.00 3.68
635 655 1.216941 AAAACGCGACGACCGTCAAT 61.217 50.000 15.93 4.26 44.77 2.57
651 671 0.179174 CAATTACTGCCCGTTTCGCC 60.179 55.000 0.00 0.00 0.00 5.54
653 673 0.743345 ATTACTGCCCGTTTCGCCTC 60.743 55.000 0.00 0.00 0.00 4.70
660 680 1.153628 CCGTTTCGCCTCTCCGAAT 60.154 57.895 0.00 0.00 45.40 3.34
670 690 2.740256 GCCTCTCCGAATCCAGAGAAAC 60.740 54.545 5.65 0.00 38.85 2.78
671 691 2.497675 CCTCTCCGAATCCAGAGAAACA 59.502 50.000 5.65 0.00 38.85 2.83
676 696 6.889198 TCTCCGAATCCAGAGAAACATAAAT 58.111 36.000 0.00 0.00 36.22 1.40
679 699 7.217200 TCCGAATCCAGAGAAACATAAATAGG 58.783 38.462 0.00 0.00 0.00 2.57
687 707 6.255887 CAGAGAAACATAAATAGGACACGACC 59.744 42.308 0.00 0.00 0.00 4.79
688 708 6.045072 AGAAACATAAATAGGACACGACCA 57.955 37.500 0.00 0.00 0.00 4.02
706 769 2.425668 ACCAAAACTCCGTCAAACTTGG 59.574 45.455 0.00 0.00 38.23 3.61
707 770 2.459934 CAAAACTCCGTCAAACTTGGC 58.540 47.619 0.00 0.00 0.00 4.52
723 786 1.484038 TGGCTGGTTTGAAGCAAGTT 58.516 45.000 0.00 0.00 42.69 2.66
725 788 2.204237 GGCTGGTTTGAAGCAAGTTTG 58.796 47.619 0.00 0.00 42.69 2.93
726 789 2.159114 GGCTGGTTTGAAGCAAGTTTGA 60.159 45.455 0.00 0.00 42.69 2.69
727 790 3.520569 GCTGGTTTGAAGCAAGTTTGAA 58.479 40.909 0.00 0.00 40.52 2.69
728 791 3.306973 GCTGGTTTGAAGCAAGTTTGAAC 59.693 43.478 0.00 0.00 40.52 3.18
730 793 4.887748 TGGTTTGAAGCAAGTTTGAACAA 58.112 34.783 0.00 0.00 32.80 2.83
731 794 5.300752 TGGTTTGAAGCAAGTTTGAACAAA 58.699 33.333 0.00 0.00 32.80 2.83
732 795 5.407995 TGGTTTGAAGCAAGTTTGAACAAAG 59.592 36.000 0.00 0.00 32.80 2.77
733 796 5.408299 GGTTTGAAGCAAGTTTGAACAAAGT 59.592 36.000 0.00 1.22 35.61 2.66
734 797 6.401047 GGTTTGAAGCAAGTTTGAACAAAGTC 60.401 38.462 7.87 0.00 33.15 3.01
750 815 1.878522 GTCTGGCACGATGCGGTAG 60.879 63.158 0.00 0.00 46.21 3.18
762 827 1.128200 TGCGGTAGCCTGGATATGTT 58.872 50.000 0.00 0.00 44.33 2.71
763 828 1.070134 TGCGGTAGCCTGGATATGTTC 59.930 52.381 0.00 0.00 44.33 3.18
764 829 1.935300 GCGGTAGCCTGGATATGTTCG 60.935 57.143 0.00 0.42 37.42 3.95
765 830 1.611977 CGGTAGCCTGGATATGTTCGA 59.388 52.381 0.00 0.00 0.00 3.71
766 831 2.035449 CGGTAGCCTGGATATGTTCGAA 59.965 50.000 0.00 0.00 0.00 3.71
767 832 3.391049 GGTAGCCTGGATATGTTCGAAC 58.609 50.000 21.42 21.42 0.00 3.95
768 833 3.069729 GGTAGCCTGGATATGTTCGAACT 59.930 47.826 27.32 15.81 0.00 3.01
769 834 3.460857 AGCCTGGATATGTTCGAACTC 57.539 47.619 27.32 17.01 0.00 3.01
770 835 2.766263 AGCCTGGATATGTTCGAACTCA 59.234 45.455 27.32 15.94 0.00 3.41
771 836 2.866762 GCCTGGATATGTTCGAACTCAC 59.133 50.000 27.32 15.74 0.00 3.51
772 837 3.458189 CCTGGATATGTTCGAACTCACC 58.542 50.000 27.32 22.54 0.00 4.02
773 838 3.133003 CCTGGATATGTTCGAACTCACCT 59.867 47.826 27.32 9.11 0.00 4.00
774 839 4.341235 CCTGGATATGTTCGAACTCACCTA 59.659 45.833 27.32 8.00 0.00 3.08
775 840 5.258456 TGGATATGTTCGAACTCACCTAC 57.742 43.478 27.32 12.82 0.00 3.18
776 841 4.201980 TGGATATGTTCGAACTCACCTACG 60.202 45.833 27.32 0.00 0.00 3.51
777 842 1.992170 ATGTTCGAACTCACCTACGC 58.008 50.000 27.32 0.00 0.00 4.42
779 844 0.038892 GTTCGAACTCACCTACGCCA 60.039 55.000 20.97 0.00 0.00 5.69
780 845 0.892755 TTCGAACTCACCTACGCCAT 59.107 50.000 0.00 0.00 0.00 4.40
781 846 0.172578 TCGAACTCACCTACGCCATG 59.827 55.000 0.00 0.00 0.00 3.66
783 848 0.462047 GAACTCACCTACGCCATGGG 60.462 60.000 15.13 6.26 34.27 4.00
795 860 4.051167 CATGGGCCCTGCACTGGA 62.051 66.667 25.70 0.00 30.56 3.86
796 861 3.025599 ATGGGCCCTGCACTGGAT 61.026 61.111 25.70 1.42 30.56 3.41
797 862 2.629498 ATGGGCCCTGCACTGGATT 61.629 57.895 25.70 0.00 30.56 3.01
798 863 2.757099 GGGCCCTGCACTGGATTG 60.757 66.667 17.04 0.00 0.00 2.67
799 864 3.455469 GGCCCTGCACTGGATTGC 61.455 66.667 0.00 0.00 43.31 3.56
805 870 3.357919 GCACTGGATTGCACTGCA 58.642 55.556 0.00 0.00 42.49 4.41
806 871 1.080974 GCACTGGATTGCACTGCAC 60.081 57.895 2.26 0.00 42.49 4.57
807 872 1.582968 CACTGGATTGCACTGCACC 59.417 57.895 2.26 3.34 38.71 5.01
808 873 1.968017 ACTGGATTGCACTGCACCG 60.968 57.895 2.26 2.68 38.71 4.94
809 874 2.672651 TGGATTGCACTGCACCGG 60.673 61.111 2.26 0.00 38.71 5.28
810 875 4.120331 GGATTGCACTGCACCGGC 62.120 66.667 2.26 0.00 38.71 6.13
833 898 1.129811 CCACCTTAATTCGACCGTTGC 59.870 52.381 0.00 0.00 0.00 4.17
835 900 0.730840 CCTTAATTCGACCGTTGCCC 59.269 55.000 0.00 0.00 0.00 5.36
864 930 2.161030 CCGATTTAAACCGGTTTCCCA 58.839 47.619 34.79 20.12 40.78 4.37
875 941 1.077716 GTTTCCCACCTCCCATCCG 60.078 63.158 0.00 0.00 0.00 4.18
880 946 4.552365 CACCTCCCATCCGCGCAT 62.552 66.667 8.75 0.00 0.00 4.73
934 1007 0.588252 CAACCAACACTCTGCTTCCG 59.412 55.000 0.00 0.00 0.00 4.30
941 1014 0.390472 CACTCTGCTTCCGTCCTTCC 60.390 60.000 0.00 0.00 0.00 3.46
942 1015 0.543174 ACTCTGCTTCCGTCCTTCCT 60.543 55.000 0.00 0.00 0.00 3.36
943 1016 0.610687 CTCTGCTTCCGTCCTTCCTT 59.389 55.000 0.00 0.00 0.00 3.36
944 1017 0.608640 TCTGCTTCCGTCCTTCCTTC 59.391 55.000 0.00 0.00 0.00 3.46
1009 1084 2.835431 CGCCTCCGATGGACTCCT 60.835 66.667 0.00 0.00 36.29 3.69
1143 1218 1.281287 TCCACGGTACTACTGCTCTCT 59.719 52.381 0.00 0.00 0.00 3.10
1144 1219 1.671845 CCACGGTACTACTGCTCTCTC 59.328 57.143 0.00 0.00 0.00 3.20
1145 1220 1.328069 CACGGTACTACTGCTCTCTCG 59.672 57.143 0.00 0.00 0.00 4.04
1147 1222 0.664224 GGTACTACTGCTCTCTCGCC 59.336 60.000 0.00 0.00 0.00 5.54
1148 1223 0.305313 GTACTACTGCTCTCTCGCCG 59.695 60.000 0.00 0.00 0.00 6.46
1149 1224 1.437772 TACTACTGCTCTCTCGCCGC 61.438 60.000 0.00 0.00 0.00 6.53
1150 1225 3.477224 CTACTGCTCTCTCGCCGCC 62.477 68.421 0.00 0.00 0.00 6.13
1190 1265 3.056322 CCTGGCTGAAATCCCTCTTTTTG 60.056 47.826 0.00 0.00 0.00 2.44
1195 1271 4.212004 GCTGAAATCCCTCTTTTTGTTTGC 59.788 41.667 0.00 0.00 0.00 3.68
1221 1297 3.823330 GGACGGATCCTGACGCGT 61.823 66.667 13.85 13.85 42.45 6.01
1232 1308 4.436448 GACGCGTGCTTGCTCTGC 62.436 66.667 20.70 0.00 0.00 4.26
1389 1466 1.675219 GCCCAGAAGGTAACCACGA 59.325 57.895 0.00 0.00 38.26 4.35
1396 1473 2.904434 AGAAGGTAACCACGATTCCAGT 59.096 45.455 0.00 0.00 37.17 4.00
1400 1477 2.028385 GGTAACCACGATTCCAGTCACT 60.028 50.000 0.00 0.00 0.00 3.41
1401 1478 2.169832 AACCACGATTCCAGTCACTG 57.830 50.000 0.00 0.00 0.00 3.66
1417 1494 3.067106 TCACTGTTGCGATTTCTTCTCC 58.933 45.455 0.00 0.00 0.00 3.71
1440 1517 1.769098 CGTTCCGATCCGACGCTCTA 61.769 60.000 0.00 0.00 0.00 2.43
1444 1521 0.387367 CCGATCCGACGCTCTAATGG 60.387 60.000 0.00 0.00 0.00 3.16
1460 1537 4.978110 TAATGGCGACCATCTGACGCTG 62.978 54.545 11.08 0.00 44.40 5.18
1462 1539 2.885113 CGACCATCTGACGCTGGA 59.115 61.111 2.90 0.00 36.35 3.86
1463 1540 1.439228 CGACCATCTGACGCTGGAT 59.561 57.895 2.90 0.00 36.35 3.41
1464 1541 0.596083 CGACCATCTGACGCTGGATC 60.596 60.000 2.90 0.00 36.35 3.36
1467 1544 0.463204 CCATCTGACGCTGGATCTGT 59.537 55.000 0.00 0.00 34.24 3.41
1468 1545 1.568606 CATCTGACGCTGGATCTGTG 58.431 55.000 0.00 0.00 0.00 3.66
1469 1546 0.179089 ATCTGACGCTGGATCTGTGC 60.179 55.000 0.00 0.00 0.00 4.57
1481 1558 2.731691 ATCTGTGCGTGCTCCGGTTT 62.732 55.000 0.00 0.00 36.94 3.27
1482 1559 2.515057 TGTGCGTGCTCCGGTTTT 60.515 55.556 0.00 0.00 36.94 2.43
1619 1696 1.014564 GGTCGCCCAGAAAGAAGTCG 61.015 60.000 0.00 0.00 0.00 4.18
1620 1697 1.374252 TCGCCCAGAAAGAAGTCGC 60.374 57.895 0.00 0.00 0.00 5.19
1621 1698 2.391389 CGCCCAGAAAGAAGTCGCC 61.391 63.158 0.00 0.00 0.00 5.54
1623 1700 1.741770 CCCAGAAAGAAGTCGCCGG 60.742 63.158 0.00 0.00 0.00 6.13
1624 1701 2.391389 CCAGAAAGAAGTCGCCGGC 61.391 63.158 19.07 19.07 0.00 6.13
1626 1703 2.431942 GAAAGAAGTCGCCGGCGA 60.432 61.111 45.37 45.37 46.87 5.54
1641 1718 3.793144 CGAAGCTCTGGGCAACGC 61.793 66.667 0.74 0.00 44.79 4.84
1642 1719 3.793144 GAAGCTCTGGGCAACGCG 61.793 66.667 3.53 3.53 44.79 6.01
1782 1859 4.091509 GCGAGCAGAAAGAATCTCGTTTTA 59.908 41.667 11.33 0.00 46.98 1.52
1784 1861 6.406820 CGAGCAGAAAGAATCTCGTTTTATC 58.593 40.000 0.00 0.00 42.24 1.75
1812 1909 3.602491 CGATTTCCGCTGATGATTTCGTC 60.602 47.826 0.00 0.00 0.00 4.20
1827 1924 2.488355 GTCGCTGATTCCGACCGA 59.512 61.111 2.79 0.00 46.78 4.69
1829 1926 2.949678 CGCTGATTCCGACCGACG 60.950 66.667 0.00 0.00 42.18 5.12
1832 1929 0.734942 GCTGATTCCGACCGACGAAA 60.735 55.000 0.00 0.00 45.77 3.46
1833 1930 1.705256 CTGATTCCGACCGACGAAAA 58.295 50.000 0.00 0.00 45.77 2.29
1961 2064 2.125350 GAGGAGAACAGGCGGCTG 60.125 66.667 34.75 34.75 0.00 4.85
1980 2083 4.527157 GGGACGGCTACGACGACG 62.527 72.222 5.58 5.58 44.60 5.12
2024 2127 5.622914 CGAGGAAGACGACCTGGTAATTAAA 60.623 44.000 0.00 0.00 37.93 1.52
2025 2128 6.309389 AGGAAGACGACCTGGTAATTAAAT 57.691 37.500 0.00 0.00 36.30 1.40
2026 2129 6.346896 AGGAAGACGACCTGGTAATTAAATC 58.653 40.000 0.00 0.00 36.30 2.17
2031 2134 5.562635 ACGACCTGGTAATTAAATCACCAA 58.437 37.500 0.00 0.00 41.65 3.67
2033 2136 5.163693 CGACCTGGTAATTAAATCACCAACC 60.164 44.000 0.00 0.00 41.65 3.77
2034 2137 5.899278 ACCTGGTAATTAAATCACCAACCT 58.101 37.500 0.00 0.00 41.65 3.50
2036 2139 5.065988 CCTGGTAATTAAATCACCAACCTCG 59.934 44.000 7.39 0.00 41.65 4.63
2056 2169 4.373527 TCGAGAACCAAAATCGACAGAAA 58.626 39.130 0.00 0.00 40.29 2.52
2057 2170 4.994852 TCGAGAACCAAAATCGACAGAAAT 59.005 37.500 0.00 0.00 40.29 2.17
2076 2198 2.358737 GTCACCGGTCTTGCCTGG 60.359 66.667 2.59 0.00 37.10 4.45
2077 2199 4.329545 TCACCGGTCTTGCCTGGC 62.330 66.667 12.87 12.87 35.33 4.85
2078 2200 4.335647 CACCGGTCTTGCCTGGCT 62.336 66.667 21.03 0.00 35.33 4.75
2079 2201 2.606519 ACCGGTCTTGCCTGGCTA 60.607 61.111 21.03 11.84 35.33 3.93
2096 2218 4.386711 TGGCTAGCTGATGATCAATCTTG 58.613 43.478 15.72 0.00 36.15 3.02
2097 2219 4.102054 TGGCTAGCTGATGATCAATCTTGA 59.898 41.667 15.72 0.00 42.14 3.02
2251 2373 3.465403 CTCACCGCCCAGGAGGAG 61.465 72.222 13.96 5.46 45.00 3.69
2260 2382 1.958288 CCCAGGAGGAGGAAGAAGAA 58.042 55.000 0.00 0.00 38.24 2.52
2341 2463 2.876645 GACTTCTCGTCGCCGCTG 60.877 66.667 0.00 0.00 32.04 5.18
2377 2499 4.790861 GGCGAGTTCGACGGGGTC 62.791 72.222 5.60 0.00 43.02 4.46
2422 2544 1.956170 CGTGCTGGTGTCACCTGAC 60.956 63.158 27.89 20.67 44.97 3.51
2431 2553 3.971858 GTCACCTGACGAGTAGACG 57.028 57.895 0.00 0.00 35.12 4.18
2432 2554 0.447011 GTCACCTGACGAGTAGACGG 59.553 60.000 0.00 0.00 35.12 4.79
2433 2555 0.322648 TCACCTGACGAGTAGACGGA 59.677 55.000 0.00 0.00 37.61 4.69
2434 2556 1.065636 TCACCTGACGAGTAGACGGAT 60.066 52.381 0.00 0.00 37.61 4.18
2435 2557 1.064208 CACCTGACGAGTAGACGGATG 59.936 57.143 0.00 0.00 37.61 3.51
2436 2558 0.029567 CCTGACGAGTAGACGGATGC 59.970 60.000 0.00 0.00 37.61 3.91
2437 2559 0.029567 CTGACGAGTAGACGGATGCC 59.970 60.000 0.00 0.00 37.61 4.40
2438 2560 1.359475 GACGAGTAGACGGATGCCC 59.641 63.158 0.00 0.00 37.61 5.36
2464 2586 3.329093 GGGGGAGAATGAGCTGCT 58.671 61.111 0.00 0.00 0.00 4.24
2465 2587 1.153005 GGGGGAGAATGAGCTGCTG 60.153 63.158 7.01 0.00 0.00 4.41
2466 2588 1.153005 GGGGAGAATGAGCTGCTGG 60.153 63.158 7.01 0.00 0.00 4.85
2467 2589 1.153005 GGGAGAATGAGCTGCTGGG 60.153 63.158 7.01 0.00 0.00 4.45
2468 2590 1.606531 GGAGAATGAGCTGCTGGGT 59.393 57.895 7.01 0.00 0.00 4.51
2469 2591 0.747283 GGAGAATGAGCTGCTGGGTG 60.747 60.000 7.01 0.00 0.00 4.61
2470 2592 0.747283 GAGAATGAGCTGCTGGGTGG 60.747 60.000 7.01 0.00 0.00 4.61
2471 2593 1.001641 GAATGAGCTGCTGGGTGGT 60.002 57.895 7.01 0.00 0.00 4.16
2472 2594 1.303888 AATGAGCTGCTGGGTGGTG 60.304 57.895 7.01 0.00 0.00 4.17
2473 2595 2.072874 AATGAGCTGCTGGGTGGTGT 62.073 55.000 7.01 0.00 0.00 4.16
2474 2596 2.670934 GAGCTGCTGGGTGGTGTG 60.671 66.667 7.01 0.00 0.00 3.82
2475 2597 3.482232 GAGCTGCTGGGTGGTGTGT 62.482 63.158 7.01 0.00 0.00 3.72
2476 2598 2.519302 GCTGCTGGGTGGTGTGTT 60.519 61.111 0.00 0.00 0.00 3.32
2477 2599 2.555547 GCTGCTGGGTGGTGTGTTC 61.556 63.158 0.00 0.00 0.00 3.18
2478 2600 1.898574 CTGCTGGGTGGTGTGTTCC 60.899 63.158 0.00 0.00 0.00 3.62
2479 2601 2.194597 GCTGGGTGGTGTGTTCCA 59.805 61.111 0.00 0.00 34.85 3.53
2480 2602 1.454847 GCTGGGTGGTGTGTTCCAA 60.455 57.895 0.00 0.00 39.34 3.53
2481 2603 0.827507 GCTGGGTGGTGTGTTCCAAT 60.828 55.000 0.00 0.00 39.34 3.16
2482 2604 0.961019 CTGGGTGGTGTGTTCCAATG 59.039 55.000 0.00 0.00 39.34 2.82
2483 2605 0.468958 TGGGTGGTGTGTTCCAATGG 60.469 55.000 0.00 0.00 39.34 3.16
2484 2606 0.469144 GGGTGGTGTGTTCCAATGGT 60.469 55.000 0.00 0.00 39.34 3.55
2485 2607 0.673437 GGTGGTGTGTTCCAATGGTG 59.327 55.000 0.00 0.00 39.34 4.17
2500 2622 2.214376 TGGTGGAATTTCTTCGGCAT 57.786 45.000 0.00 0.00 31.75 4.40
2504 2641 2.231235 GTGGAATTTCTTCGGCATGGTT 59.769 45.455 0.00 0.00 31.75 3.67
2505 2642 2.491693 TGGAATTTCTTCGGCATGGTTC 59.508 45.455 0.00 0.00 31.75 3.62
2508 2645 1.582610 TTTCTTCGGCATGGTTCGGC 61.583 55.000 0.00 0.00 0.00 5.54
2511 2648 1.586154 CTTCGGCATGGTTCGGCTTT 61.586 55.000 0.00 0.00 0.00 3.51
2513 2650 0.321741 TCGGCATGGTTCGGCTTTTA 60.322 50.000 0.00 0.00 0.00 1.52
2515 2652 0.885196 GGCATGGTTCGGCTTTTACA 59.115 50.000 0.00 0.00 0.00 2.41
2519 2656 3.564511 CATGGTTCGGCTTTTACAGTTG 58.435 45.455 0.00 0.00 0.00 3.16
2520 2657 2.645802 TGGTTCGGCTTTTACAGTTGT 58.354 42.857 0.00 0.00 0.00 3.32
2524 2661 4.266739 GGTTCGGCTTTTACAGTTGTTTTG 59.733 41.667 0.00 0.00 0.00 2.44
2525 2662 3.440228 TCGGCTTTTACAGTTGTTTTGC 58.560 40.909 0.00 0.00 0.00 3.68
2526 2663 2.215363 CGGCTTTTACAGTTGTTTTGCG 59.785 45.455 0.00 0.00 0.00 4.85
2559 2699 0.390472 GTTTGAGCACTCTCTCCGGG 60.390 60.000 0.00 0.00 40.03 5.73
2560 2700 0.541998 TTTGAGCACTCTCTCCGGGA 60.542 55.000 0.00 0.00 40.03 5.14
2561 2701 1.251527 TTGAGCACTCTCTCCGGGAC 61.252 60.000 0.00 0.00 40.03 4.46
2562 2702 1.379309 GAGCACTCTCTCCGGGACT 60.379 63.158 0.00 0.00 36.42 3.85
2564 2704 1.379309 GCACTCTCTCCGGGACTCT 60.379 63.158 0.00 0.00 0.00 3.24
2565 2705 0.968393 GCACTCTCTCCGGGACTCTT 60.968 60.000 0.00 0.00 0.00 2.85
2566 2706 1.551452 CACTCTCTCCGGGACTCTTT 58.449 55.000 0.00 0.00 0.00 2.52
2609 2817 0.599728 GGCTTCAGCGCCTCAGATAG 60.600 60.000 2.29 0.00 46.63 2.08
2648 2856 5.998454 ACTGCACAGATTATTAGCATGTC 57.002 39.130 4.31 0.00 34.35 3.06
2650 2858 3.809279 TGCACAGATTATTAGCATGTCCG 59.191 43.478 0.00 0.00 0.00 4.79
2654 2862 4.692625 ACAGATTATTAGCATGTCCGATGC 59.307 41.667 0.00 0.00 44.85 3.91
2673 2881 2.692557 TGCTCTCTCCATAAGCTCTGAC 59.307 50.000 0.00 0.00 36.96 3.51
2714 2922 0.176680 CCTGGGATGGTTCTGACGAG 59.823 60.000 0.00 0.00 0.00 4.18
2717 2925 1.482182 TGGGATGGTTCTGACGAGATG 59.518 52.381 0.00 0.00 0.00 2.90
2728 2936 0.594110 GACGAGATGATCTCCGGGAC 59.406 60.000 16.26 0.40 40.34 4.46
2735 2943 5.183331 CGAGATGATCTCCGGGACTTAATTA 59.817 44.000 16.26 0.00 40.34 1.40
2737 2945 7.560796 AGATGATCTCCGGGACTTAATTATT 57.439 36.000 0.00 0.00 0.00 1.40
2738 2946 8.666129 AGATGATCTCCGGGACTTAATTATTA 57.334 34.615 0.00 0.00 0.00 0.98
2741 2949 7.667557 TGATCTCCGGGACTTAATTATTACTG 58.332 38.462 0.00 0.00 0.00 2.74
2742 2950 5.850614 TCTCCGGGACTTAATTATTACTGC 58.149 41.667 0.00 0.00 0.00 4.40
2743 2951 5.364446 TCTCCGGGACTTAATTATTACTGCA 59.636 40.000 0.00 0.00 0.00 4.41
2745 2953 6.597562 TCCGGGACTTAATTATTACTGCATT 58.402 36.000 0.00 0.00 0.00 3.56
2746 2954 6.708949 TCCGGGACTTAATTATTACTGCATTC 59.291 38.462 0.00 0.00 0.00 2.67
2747 2955 6.710744 CCGGGACTTAATTATTACTGCATTCT 59.289 38.462 0.00 0.00 0.00 2.40
2750 2958 9.998106 GGGACTTAATTATTACTGCATTCTCTA 57.002 33.333 0.00 0.00 0.00 2.43
2758 2966 5.620738 TTACTGCATTCTCTATTCAGGCT 57.379 39.130 0.00 0.00 32.52 4.58
2773 3004 0.036022 AGGCTGTTCCACTCTGAAGC 59.964 55.000 0.00 0.00 37.29 3.86
2800 3031 3.200825 ACCTGGGATGATTCTGACGAAAT 59.799 43.478 0.00 0.00 31.91 2.17
2802 3033 4.445453 CTGGGATGATTCTGACGAAATGA 58.555 43.478 0.00 0.00 31.91 2.57
2803 3034 5.039920 TGGGATGATTCTGACGAAATGAT 57.960 39.130 0.00 0.00 31.91 2.45
2804 3035 5.059161 TGGGATGATTCTGACGAAATGATC 58.941 41.667 0.00 0.00 31.91 2.92
2805 3036 5.163269 TGGGATGATTCTGACGAAATGATCT 60.163 40.000 0.00 0.00 31.91 2.75
2806 3037 5.407995 GGGATGATTCTGACGAAATGATCTC 59.592 44.000 0.00 0.00 31.91 2.75
2808 3039 6.073873 GGATGATTCTGACGAAATGATCTCAC 60.074 42.308 0.00 0.00 31.91 3.51
2809 3040 5.723295 TGATTCTGACGAAATGATCTCACA 58.277 37.500 0.00 0.00 31.91 3.58
2810 3041 5.809051 TGATTCTGACGAAATGATCTCACAG 59.191 40.000 0.00 0.00 31.91 3.66
2811 3042 3.515630 TCTGACGAAATGATCTCACAGC 58.484 45.455 0.00 0.00 0.00 4.40
2812 3043 3.194329 TCTGACGAAATGATCTCACAGCT 59.806 43.478 0.00 0.00 0.00 4.24
2813 3044 3.930336 TGACGAAATGATCTCACAGCTT 58.070 40.909 0.00 0.00 0.00 3.74
2814 3045 3.928992 TGACGAAATGATCTCACAGCTTC 59.071 43.478 0.00 0.00 0.00 3.86
2815 3046 4.180057 GACGAAATGATCTCACAGCTTCT 58.820 43.478 0.00 0.00 0.00 2.85
2816 3047 3.931468 ACGAAATGATCTCACAGCTTCTG 59.069 43.478 0.00 0.00 37.52 3.02
2817 3048 3.931468 CGAAATGATCTCACAGCTTCTGT 59.069 43.478 0.00 0.00 46.51 3.41
2818 3049 4.391216 CGAAATGATCTCACAGCTTCTGTT 59.609 41.667 0.00 0.00 42.59 3.16
2819 3050 5.106791 CGAAATGATCTCACAGCTTCTGTTT 60.107 40.000 0.00 0.00 42.59 2.83
2820 3051 6.091305 CGAAATGATCTCACAGCTTCTGTTTA 59.909 38.462 0.00 0.00 42.59 2.01
2821 3052 7.201591 CGAAATGATCTCACAGCTTCTGTTTAT 60.202 37.037 0.00 0.00 42.59 1.40
2822 3053 7.934855 AATGATCTCACAGCTTCTGTTTATT 57.065 32.000 0.00 0.00 42.59 1.40
2823 3054 7.934855 ATGATCTCACAGCTTCTGTTTATTT 57.065 32.000 0.00 0.00 42.59 1.40
2824 3055 9.453572 AATGATCTCACAGCTTCTGTTTATTTA 57.546 29.630 0.00 0.00 42.59 1.40
2825 3056 8.484641 TGATCTCACAGCTTCTGTTTATTTAG 57.515 34.615 0.00 0.00 42.59 1.85
2826 3057 8.097038 TGATCTCACAGCTTCTGTTTATTTAGT 58.903 33.333 0.00 0.00 42.59 2.24
2827 3058 9.587772 GATCTCACAGCTTCTGTTTATTTAGTA 57.412 33.333 0.00 0.00 42.59 1.82
2854 3085 4.625972 AAAACAAGTAAACCGAGGTGTG 57.374 40.909 0.00 0.00 0.00 3.82
2855 3086 3.547054 AACAAGTAAACCGAGGTGTGA 57.453 42.857 0.00 0.00 0.00 3.58
2856 3087 3.764237 ACAAGTAAACCGAGGTGTGAT 57.236 42.857 0.00 0.00 0.00 3.06
2857 3088 3.660865 ACAAGTAAACCGAGGTGTGATC 58.339 45.455 0.00 0.00 0.00 2.92
2858 3089 3.323979 ACAAGTAAACCGAGGTGTGATCT 59.676 43.478 0.00 0.00 0.00 2.75
2859 3090 4.202326 ACAAGTAAACCGAGGTGTGATCTT 60.202 41.667 0.00 0.00 0.00 2.40
2860 3091 3.926616 AGTAAACCGAGGTGTGATCTTG 58.073 45.455 0.00 0.00 0.00 3.02
2861 3092 3.576982 AGTAAACCGAGGTGTGATCTTGA 59.423 43.478 0.00 0.00 0.00 3.02
2862 3093 2.751166 AACCGAGGTGTGATCTTGAG 57.249 50.000 0.00 0.00 0.00 3.02
2863 3094 0.247736 ACCGAGGTGTGATCTTGAGC 59.752 55.000 0.00 0.00 0.00 4.26
2864 3095 0.803768 CCGAGGTGTGATCTTGAGCG 60.804 60.000 0.00 0.00 0.00 5.03
2878 3109 0.612174 TGAGCGAGGGAAGCTACTGT 60.612 55.000 0.00 0.00 46.13 3.55
2879 3110 0.533032 GAGCGAGGGAAGCTACTGTT 59.467 55.000 0.00 0.00 46.13 3.16
2882 3113 1.066787 GCGAGGGAAGCTACTGTTCTT 60.067 52.381 0.00 0.00 0.00 2.52
2883 3114 2.165845 GCGAGGGAAGCTACTGTTCTTA 59.834 50.000 0.00 0.00 0.00 2.10
2889 3120 4.101119 GGGAAGCTACTGTTCTTAGCCATA 59.899 45.833 0.00 0.00 42.63 2.74
2927 3158 8.606602 TCACGATTACATTTTCTTGATGATCTG 58.393 33.333 0.00 0.00 0.00 2.90
2956 3197 2.851195 AGACGATTTGAAGTGGTGCTT 58.149 42.857 0.00 0.00 40.76 3.91
2958 3199 1.001378 ACGATTTGAAGTGGTGCTTGC 60.001 47.619 0.00 0.00 37.59 4.01
2969 3210 0.731417 GGTGCTTGCTGTCTATGCTG 59.269 55.000 0.00 0.00 0.00 4.41
2970 3211 1.446907 GTGCTTGCTGTCTATGCTGT 58.553 50.000 0.00 0.00 0.00 4.40
2971 3212 2.621338 GTGCTTGCTGTCTATGCTGTA 58.379 47.619 0.00 0.00 0.00 2.74
2972 3213 2.349886 GTGCTTGCTGTCTATGCTGTAC 59.650 50.000 0.00 0.00 0.00 2.90
2973 3214 2.234661 TGCTTGCTGTCTATGCTGTACT 59.765 45.455 0.00 0.00 0.00 2.73
2974 3215 3.447229 TGCTTGCTGTCTATGCTGTACTA 59.553 43.478 0.00 0.00 0.00 1.82
2975 3216 4.081697 TGCTTGCTGTCTATGCTGTACTAA 60.082 41.667 0.00 0.00 0.00 2.24
2976 3217 4.870426 GCTTGCTGTCTATGCTGTACTAAA 59.130 41.667 0.00 0.00 0.00 1.85
2977 3218 5.351465 GCTTGCTGTCTATGCTGTACTAAAA 59.649 40.000 0.00 0.00 0.00 1.52
2978 3219 6.673316 GCTTGCTGTCTATGCTGTACTAAAAC 60.673 42.308 0.00 0.00 0.00 2.43
2979 3220 6.037786 TGCTGTCTATGCTGTACTAAAACT 57.962 37.500 0.00 0.00 0.00 2.66
2980 3221 7.165460 TGCTGTCTATGCTGTACTAAAACTA 57.835 36.000 0.00 0.00 0.00 2.24
2981 3222 7.033791 TGCTGTCTATGCTGTACTAAAACTAC 58.966 38.462 0.00 0.00 0.00 2.73
2990 3231 7.729116 TGCTGTACTAAAACTACAACCTAGTT 58.271 34.615 0.00 0.00 39.24 2.24
3003 3244 8.958506 ACTACAACCTAGTTAGTCTCTAATGTG 58.041 37.037 0.00 0.00 0.00 3.21
3038 3279 8.110860 ACTAATTTACAACCATTTCACTCCAG 57.889 34.615 0.00 0.00 0.00 3.86
3048 3289 4.380867 CCATTTCACTCCAGCACCAATTAC 60.381 45.833 0.00 0.00 0.00 1.89
3054 3295 4.012374 ACTCCAGCACCAATTACAAGATG 58.988 43.478 0.00 0.00 0.00 2.90
3086 3327 5.509501 GGAGGAGCACAAACATCATCAAAAA 60.510 40.000 0.00 0.00 0.00 1.94
3129 3370 1.687146 CACAGGAGGGGAGCTGCTA 60.687 63.158 0.15 0.00 0.00 3.49
3153 3394 1.986413 CCTCAACTGGCTAGCACCT 59.014 57.895 18.24 0.00 0.00 4.00
3168 3409 4.800554 CCTGCTGGGTTCTTCGTT 57.199 55.556 0.71 0.00 0.00 3.85
3174 3415 1.542547 GCTGGGTTCTTCGTTTCCTGA 60.543 52.381 0.00 0.00 0.00 3.86
3183 3424 4.404640 TCTTCGTTTCCTGAGGAGAGTAA 58.595 43.478 0.00 0.00 31.21 2.24
3235 3476 4.223032 GTGAGTTGATGGAGAGAGGGTTTA 59.777 45.833 0.00 0.00 0.00 2.01
3262 3503 3.990092 TCGGTGTCATAACCTGCATATC 58.010 45.455 0.00 0.00 38.14 1.63
3264 3505 3.067106 GGTGTCATAACCTGCATATCCG 58.933 50.000 0.00 0.00 37.24 4.18
3265 3506 2.480419 GTGTCATAACCTGCATATCCGC 59.520 50.000 0.00 0.00 0.00 5.54
3266 3507 2.103941 TGTCATAACCTGCATATCCGCA 59.896 45.455 0.00 0.00 40.32 5.69
3267 3508 2.480419 GTCATAACCTGCATATCCGCAC 59.520 50.000 0.00 0.00 36.86 5.34
3268 3509 2.103941 TCATAACCTGCATATCCGCACA 59.896 45.455 0.00 0.00 36.86 4.57
3271 3512 2.057137 ACCTGCATATCCGCACAAAT 57.943 45.000 0.00 0.00 36.86 2.32
3272 3513 1.677576 ACCTGCATATCCGCACAAATG 59.322 47.619 0.00 0.00 36.86 2.32
3274 3515 2.031420 CCTGCATATCCGCACAAATGAG 60.031 50.000 0.00 0.00 36.86 2.90
3316 3572 9.695526 TTCTATGAAGAAACAAAACATTCATGG 57.304 29.630 8.56 6.21 40.02 3.66
3317 3573 8.859090 TCTATGAAGAAACAAAACATTCATGGT 58.141 29.630 8.56 0.00 40.02 3.55
3372 3628 2.719426 TCTTCCTTTCTCGGTCGAAC 57.281 50.000 0.00 0.00 0.00 3.95
3375 3631 0.039798 TCCTTTCTCGGTCGAACACG 60.040 55.000 0.00 0.00 0.00 4.49
3396 3652 4.685447 CGGACACCGGTCATGAAA 57.315 55.556 2.59 0.00 46.17 2.69
3399 3655 1.396996 CGGACACCGGTCATGAAATTC 59.603 52.381 2.59 0.00 46.17 2.17
3403 3659 4.382685 GGACACCGGTCATGAAATTCTCTA 60.383 45.833 2.59 0.00 46.17 2.43
3409 3665 4.330074 CGGTCATGAAATTCTCTACACCAC 59.670 45.833 0.00 0.00 0.00 4.16
3410 3666 5.245531 GGTCATGAAATTCTCTACACCACA 58.754 41.667 0.00 0.00 0.00 4.17
3411 3667 5.705441 GGTCATGAAATTCTCTACACCACAA 59.295 40.000 0.00 0.00 0.00 3.33
3412 3668 6.206634 GGTCATGAAATTCTCTACACCACAAA 59.793 38.462 0.00 0.00 0.00 2.83
3413 3669 7.078228 GTCATGAAATTCTCTACACCACAAAC 58.922 38.462 0.00 0.00 0.00 2.93
3414 3670 6.770303 TCATGAAATTCTCTACACCACAAACA 59.230 34.615 0.00 0.00 0.00 2.83
3415 3671 7.284261 TCATGAAATTCTCTACACCACAAACAA 59.716 33.333 0.00 0.00 0.00 2.83
3416 3672 7.581213 TGAAATTCTCTACACCACAAACAAT 57.419 32.000 0.00 0.00 0.00 2.71
3417 3673 7.424803 TGAAATTCTCTACACCACAAACAATG 58.575 34.615 0.00 0.00 0.00 2.82
3418 3674 4.829064 TTCTCTACACCACAAACAATGC 57.171 40.909 0.00 0.00 0.00 3.56
3419 3675 3.814625 TCTCTACACCACAAACAATGCA 58.185 40.909 0.00 0.00 0.00 3.96
3420 3676 3.814842 TCTCTACACCACAAACAATGCAG 59.185 43.478 0.00 0.00 0.00 4.41
3421 3677 3.814625 TCTACACCACAAACAATGCAGA 58.185 40.909 0.00 0.00 0.00 4.26
3422 3678 3.814842 TCTACACCACAAACAATGCAGAG 59.185 43.478 0.00 0.00 0.00 3.35
3423 3679 2.378038 ACACCACAAACAATGCAGAGT 58.622 42.857 0.00 0.00 0.00 3.24
3424 3680 2.358898 ACACCACAAACAATGCAGAGTC 59.641 45.455 0.00 0.00 0.00 3.36
3425 3681 1.956477 ACCACAAACAATGCAGAGTCC 59.044 47.619 0.00 0.00 0.00 3.85
3426 3682 1.955778 CCACAAACAATGCAGAGTCCA 59.044 47.619 0.00 0.00 0.00 4.02
3427 3683 2.559668 CCACAAACAATGCAGAGTCCAT 59.440 45.455 0.00 0.00 0.00 3.41
3428 3684 3.006110 CCACAAACAATGCAGAGTCCATT 59.994 43.478 0.00 0.00 33.41 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.249657 GAAGCTCCTACGCCATCAGG 60.250 60.000 0.00 0.00 38.23 3.86
1 2 0.596083 CGAAGCTCCTACGCCATCAG 60.596 60.000 0.00 0.00 0.00 2.90
2 3 1.437573 CGAAGCTCCTACGCCATCA 59.562 57.895 0.00 0.00 0.00 3.07
3 4 1.300233 CCGAAGCTCCTACGCCATC 60.300 63.158 0.00 0.00 0.00 3.51
61 62 6.907853 TTTGGATGTCAAAATATGTCACCA 57.092 33.333 0.00 0.00 41.87 4.17
107 108 4.023792 CAGTACCATATCGTAACAGCCGTA 60.024 45.833 0.00 0.00 0.00 4.02
109 110 3.305964 CAGTACCATATCGTAACAGCCG 58.694 50.000 0.00 0.00 0.00 5.52
192 193 9.853555 GTCATAAACATCCACACATTGAAATAA 57.146 29.630 0.00 0.00 0.00 1.40
201 202 4.140536 TGCAAGTCATAAACATCCACACA 58.859 39.130 0.00 0.00 0.00 3.72
211 213 6.359804 AGCATCTCCTATTGCAAGTCATAAA 58.640 36.000 4.94 0.00 41.35 1.40
213 215 5.557576 AGCATCTCCTATTGCAAGTCATA 57.442 39.130 4.94 0.00 41.35 2.15
215 217 3.920231 AGCATCTCCTATTGCAAGTCA 57.080 42.857 4.94 0.00 41.35 3.41
216 218 4.934602 GGATAGCATCTCCTATTGCAAGTC 59.065 45.833 4.94 0.00 41.35 3.01
297 303 1.828832 GCACGAGACACTAGAATCGG 58.171 55.000 0.00 0.00 39.42 4.18
301 307 0.386858 GCACGCACGAGACACTAGAA 60.387 55.000 0.00 0.00 0.00 2.10
322 328 9.448438 AGCAAGTATCAATGTTTATACACTTCA 57.552 29.630 0.00 0.00 37.03 3.02
376 382 9.602568 ACCGATATGTACATAAAACATGTTGTA 57.397 29.630 19.11 11.78 38.05 2.41
378 384 9.781834 AAACCGATATGTACATAAAACATGTTG 57.218 29.630 19.11 2.41 38.05 3.33
388 394 6.479436 CAAAACGCAAACCGATATGTACATA 58.521 36.000 17.65 17.65 41.02 2.29
483 491 5.487433 TCATACAACCCGATGCTATAATGG 58.513 41.667 0.00 0.00 0.00 3.16
484 492 7.615582 AATCATACAACCCGATGCTATAATG 57.384 36.000 0.00 0.00 0.00 1.90
491 499 2.948979 TCCAAATCATACAACCCGATGC 59.051 45.455 0.00 0.00 0.00 3.91
493 501 5.310409 AGATCCAAATCATACAACCCGAT 57.690 39.130 0.00 0.00 34.07 4.18
499 507 8.128582 GCACGATTAAAGATCCAAATCATACAA 58.871 33.333 10.94 0.00 34.07 2.41
500 508 7.518211 CGCACGATTAAAGATCCAAATCATACA 60.518 37.037 10.94 0.00 34.07 2.29
502 510 6.073276 CCGCACGATTAAAGATCCAAATCATA 60.073 38.462 10.94 0.00 34.07 2.15
503 511 5.277974 CCGCACGATTAAAGATCCAAATCAT 60.278 40.000 10.94 0.00 34.07 2.45
505 513 4.035208 ACCGCACGATTAAAGATCCAAATC 59.965 41.667 0.00 0.00 0.00 2.17
506 514 3.945285 ACCGCACGATTAAAGATCCAAAT 59.055 39.130 0.00 0.00 0.00 2.32
507 515 3.340034 ACCGCACGATTAAAGATCCAAA 58.660 40.909 0.00 0.00 0.00 3.28
508 516 2.980568 ACCGCACGATTAAAGATCCAA 58.019 42.857 0.00 0.00 0.00 3.53
510 518 3.195661 AGAACCGCACGATTAAAGATCC 58.804 45.455 0.00 0.00 0.00 3.36
512 520 5.172934 TGTAAGAACCGCACGATTAAAGAT 58.827 37.500 0.00 0.00 0.00 2.40
513 521 4.558178 TGTAAGAACCGCACGATTAAAGA 58.442 39.130 0.00 0.00 0.00 2.52
522 542 0.179200 CGCCAATGTAAGAACCGCAC 60.179 55.000 0.00 0.00 0.00 5.34
523 543 0.320858 TCGCCAATGTAAGAACCGCA 60.321 50.000 0.00 0.00 0.00 5.69
525 545 3.191669 TGTATCGCCAATGTAAGAACCG 58.808 45.455 0.00 0.00 0.00 4.44
537 557 3.531538 GTTTGAGAGGAATGTATCGCCA 58.468 45.455 0.00 0.00 0.00 5.69
540 560 2.216488 CGCGTTTGAGAGGAATGTATCG 59.784 50.000 0.00 0.00 0.00 2.92
541 561 3.187700 ACGCGTTTGAGAGGAATGTATC 58.812 45.455 5.58 0.00 0.00 2.24
542 562 3.187700 GACGCGTTTGAGAGGAATGTAT 58.812 45.455 15.53 0.00 0.00 2.29
562 582 4.595538 AAACGGCGCACACCTCGA 62.596 61.111 10.83 0.00 0.00 4.04
564 584 4.683334 GCAAACGGCGCACACCTC 62.683 66.667 10.83 0.00 0.00 3.85
581 601 3.036084 GATGCGGGCGTGGTATCG 61.036 66.667 0.00 0.00 0.00 2.92
594 614 1.270094 TGTCGGATTATGTCGGGATGC 60.270 52.381 0.00 0.00 0.00 3.91
630 650 1.465187 GCGAAACGGGCAGTAATTGAC 60.465 52.381 0.00 0.00 0.00 3.18
635 655 1.375013 GAGGCGAAACGGGCAGTAA 60.375 57.895 0.00 0.00 34.40 2.24
653 673 7.386299 CCTATTTATGTTTCTCTGGATTCGGAG 59.614 40.741 3.04 3.04 45.49 4.63
660 680 6.153851 TCGTGTCCTATTTATGTTTCTCTGGA 59.846 38.462 0.00 0.00 0.00 3.86
670 690 6.183360 GGAGTTTTGGTCGTGTCCTATTTATG 60.183 42.308 0.00 0.00 0.00 1.90
671 691 5.878669 GGAGTTTTGGTCGTGTCCTATTTAT 59.121 40.000 0.00 0.00 0.00 1.40
676 696 1.000060 CGGAGTTTTGGTCGTGTCCTA 60.000 52.381 0.00 0.00 0.00 2.94
679 699 2.981997 ACGGAGTTTTGGTCGTGTC 58.018 52.632 0.00 0.00 37.78 3.67
706 769 3.163630 TCAAACTTGCTTCAAACCAGC 57.836 42.857 0.00 0.00 37.82 4.85
707 770 4.493547 TGTTCAAACTTGCTTCAAACCAG 58.506 39.130 0.00 0.00 0.00 4.00
723 786 2.031258 TCGTGCCAGACTTTGTTCAA 57.969 45.000 0.00 0.00 0.00 2.69
725 788 1.400242 GCATCGTGCCAGACTTTGTTC 60.400 52.381 0.00 0.00 37.42 3.18
726 789 0.593128 GCATCGTGCCAGACTTTGTT 59.407 50.000 0.00 0.00 37.42 2.83
727 790 1.568612 CGCATCGTGCCAGACTTTGT 61.569 55.000 4.73 0.00 41.12 2.83
728 791 1.133253 CGCATCGTGCCAGACTTTG 59.867 57.895 4.73 0.00 41.12 2.77
730 793 1.884075 TACCGCATCGTGCCAGACTT 61.884 55.000 4.73 0.00 41.12 3.01
731 794 2.284798 CTACCGCATCGTGCCAGACT 62.285 60.000 4.73 0.00 41.12 3.24
732 795 1.878522 CTACCGCATCGTGCCAGAC 60.879 63.158 4.73 0.00 41.12 3.51
733 796 2.494445 CTACCGCATCGTGCCAGA 59.506 61.111 4.73 0.00 41.12 3.86
734 797 3.264897 GCTACCGCATCGTGCCAG 61.265 66.667 4.73 0.39 41.12 4.85
750 815 2.866762 GTGAGTTCGAACATATCCAGGC 59.133 50.000 28.78 7.83 0.00 4.85
762 827 0.172578 CATGGCGTAGGTGAGTTCGA 59.827 55.000 0.00 0.00 0.00 3.71
763 828 0.806102 CCATGGCGTAGGTGAGTTCG 60.806 60.000 0.00 0.00 0.00 3.95
764 829 0.462047 CCCATGGCGTAGGTGAGTTC 60.462 60.000 6.09 0.00 0.00 3.01
765 830 1.602237 CCCATGGCGTAGGTGAGTT 59.398 57.895 6.09 0.00 0.00 3.01
766 831 3.031417 GCCCATGGCGTAGGTGAGT 62.031 63.158 6.09 0.00 39.62 3.41
767 832 2.203070 GCCCATGGCGTAGGTGAG 60.203 66.667 6.09 0.00 39.62 3.51
779 844 2.629498 AATCCAGTGCAGGGCCCAT 61.629 57.895 27.56 6.18 0.00 4.00
780 845 3.267233 AATCCAGTGCAGGGCCCA 61.267 61.111 27.56 0.00 0.00 5.36
781 846 2.757099 CAATCCAGTGCAGGGCCC 60.757 66.667 16.46 16.46 0.00 5.80
789 854 1.582968 GGTGCAGTGCAATCCAGTG 59.417 57.895 21.67 0.00 45.75 3.66
792 857 2.672651 CCGGTGCAGTGCAATCCA 60.673 61.111 21.67 0.00 41.47 3.41
793 858 4.120331 GCCGGTGCAGTGCAATCC 62.120 66.667 21.67 16.94 41.47 3.01
794 859 4.120331 GGCCGGTGCAGTGCAATC 62.120 66.667 21.67 14.17 41.47 2.67
795 860 4.666253 AGGCCGGTGCAGTGCAAT 62.666 61.111 21.67 0.00 41.47 3.56
803 868 2.552231 ATTAAGGTGGAGGCCGGTGC 62.552 60.000 1.90 0.00 0.00 5.01
804 869 0.034477 AATTAAGGTGGAGGCCGGTG 60.034 55.000 1.90 0.00 0.00 4.94
805 870 0.255033 GAATTAAGGTGGAGGCCGGT 59.745 55.000 1.90 0.00 0.00 5.28
806 871 0.814010 CGAATTAAGGTGGAGGCCGG 60.814 60.000 0.00 0.00 0.00 6.13
807 872 0.177141 TCGAATTAAGGTGGAGGCCG 59.823 55.000 0.00 0.00 0.00 6.13
808 873 1.664873 GTCGAATTAAGGTGGAGGCC 58.335 55.000 0.00 0.00 0.00 5.19
809 874 1.664873 GGTCGAATTAAGGTGGAGGC 58.335 55.000 0.00 0.00 0.00 4.70
810 875 1.206371 ACGGTCGAATTAAGGTGGAGG 59.794 52.381 0.00 0.00 0.00 4.30
817 882 0.372334 CGGGCAACGGTCGAATTAAG 59.628 55.000 0.00 0.00 39.42 1.85
835 900 1.816259 TTTAAATCGGGAGCGGGCG 60.816 57.895 0.00 0.00 0.00 6.13
864 930 4.241555 GATGCGCGGATGGGAGGT 62.242 66.667 20.78 0.00 0.00 3.85
875 941 3.869272 CTCTGCGGTTGGATGCGC 61.869 66.667 0.00 0.00 0.00 6.09
877 943 2.747460 TGCTCTGCGGTTGGATGC 60.747 61.111 0.00 0.00 0.00 3.91
880 946 2.659016 CTCTGCTCTGCGGTTGGA 59.341 61.111 0.00 0.00 36.18 3.53
934 1007 0.252742 TGGGGGAGAGAAGGAAGGAC 60.253 60.000 0.00 0.00 0.00 3.85
941 1014 2.825264 GGCGATGGGGGAGAGAAG 59.175 66.667 0.00 0.00 0.00 2.85
942 1015 3.154473 CGGCGATGGGGGAGAGAA 61.154 66.667 0.00 0.00 0.00 2.87
984 1057 2.919856 ATCGGAGGCGGGATCAGG 60.920 66.667 0.00 0.00 0.00 3.86
1122 1197 2.092321 AGAGAGCAGTAGTACCGTGGAT 60.092 50.000 0.00 0.00 0.00 3.41
1133 1208 3.518998 GGCGGCGAGAGAGCAGTA 61.519 66.667 12.98 0.00 39.27 2.74
1149 1224 3.490793 ATCGAGATCGTGGCTGCGG 62.491 63.158 1.70 0.00 40.80 5.69
1150 1225 2.013483 GATCGAGATCGTGGCTGCG 61.013 63.158 1.70 0.00 40.80 5.18
1151 1226 1.663074 GGATCGAGATCGTGGCTGC 60.663 63.158 6.96 0.00 38.69 5.25
1152 1227 0.318529 CAGGATCGAGATCGTGGCTG 60.319 60.000 21.43 12.73 45.10 4.85
1153 1228 2.037053 CAGGATCGAGATCGTGGCT 58.963 57.895 21.43 6.00 45.10 4.75
1154 1229 4.643733 CAGGATCGAGATCGTGGC 57.356 61.111 21.43 4.10 45.10 5.01
1157 1232 0.466372 TCAGCCAGGATCGAGATCGT 60.466 55.000 6.96 4.90 38.69 3.73
1158 1233 0.670706 TTCAGCCAGGATCGAGATCG 59.329 55.000 6.96 0.00 38.69 3.69
1159 1234 2.898729 TTTCAGCCAGGATCGAGATC 57.101 50.000 4.58 4.58 37.11 2.75
1160 1235 2.038295 GGATTTCAGCCAGGATCGAGAT 59.962 50.000 0.00 0.00 0.00 2.75
1161 1236 1.414181 GGATTTCAGCCAGGATCGAGA 59.586 52.381 0.00 0.00 0.00 4.04
1162 1237 1.542108 GGGATTTCAGCCAGGATCGAG 60.542 57.143 0.00 0.00 0.00 4.04
1163 1238 0.469917 GGGATTTCAGCCAGGATCGA 59.530 55.000 0.00 0.00 0.00 3.59
1164 1239 0.471617 AGGGATTTCAGCCAGGATCG 59.528 55.000 0.00 0.00 0.00 3.69
1190 1265 3.056328 GTCCAGCTCCGGGCAAAC 61.056 66.667 15.92 7.78 44.79 2.93
1195 1271 3.917760 GATCCGTCCAGCTCCGGG 61.918 72.222 14.17 0.00 44.32 5.73
1221 1297 0.903236 AGATCAGAGCAGAGCAAGCA 59.097 50.000 0.00 0.00 0.00 3.91
1232 1308 1.336148 GCCGAGCAGATCAGATCAGAG 60.336 57.143 13.14 3.50 0.00 3.35
1389 1466 2.479566 ATCGCAACAGTGACTGGAAT 57.520 45.000 17.92 0.00 35.51 3.01
1396 1473 3.067106 GGAGAAGAAATCGCAACAGTGA 58.933 45.455 0.00 0.00 0.00 3.41
1400 1477 1.613255 GGGGGAGAAGAAATCGCAACA 60.613 52.381 0.00 0.00 0.00 3.33
1401 1478 1.095600 GGGGGAGAAGAAATCGCAAC 58.904 55.000 0.00 0.00 0.00 4.17
1440 1517 1.815421 GCGTCAGATGGTCGCCATT 60.815 57.895 11.82 1.75 45.26 3.16
1460 1537 2.887568 CGGAGCACGCACAGATCC 60.888 66.667 0.00 0.00 34.82 3.36
1461 1538 2.887568 CCGGAGCACGCACAGATC 60.888 66.667 0.00 0.00 42.52 2.75
1462 1539 2.731691 AAACCGGAGCACGCACAGAT 62.732 55.000 9.46 0.00 42.52 2.90
1463 1540 2.933878 AAAACCGGAGCACGCACAGA 62.934 55.000 9.46 0.00 42.52 3.41
1464 1541 2.058829 AAAAACCGGAGCACGCACAG 62.059 55.000 9.46 0.00 42.52 3.66
1481 1558 2.026522 CGTTCACGCCCTGGAAAAA 58.973 52.632 0.00 0.00 0.00 1.94
1482 1559 3.739167 CGTTCACGCCCTGGAAAA 58.261 55.556 0.00 0.00 0.00 2.29
1602 1679 1.374252 GCGACTTCTTTCTGGGCGA 60.374 57.895 0.00 0.00 0.00 5.54
1603 1680 2.391389 GGCGACTTCTTTCTGGGCG 61.391 63.158 0.00 0.00 0.00 6.13
1623 1700 3.793144 CGTTGCCCAGAGCTTCGC 61.793 66.667 0.00 0.00 44.23 4.70
1624 1701 3.793144 GCGTTGCCCAGAGCTTCG 61.793 66.667 0.00 0.00 44.23 3.79
1763 1840 5.354234 TGGGATAAAACGAGATTCTTTCTGC 59.646 40.000 0.00 0.00 33.74 4.26
1803 1900 1.135228 TCGGAATCAGCGACGAAATCA 60.135 47.619 0.00 0.00 31.79 2.57
1808 1905 2.488355 GGTCGGAATCAGCGACGA 59.512 61.111 0.00 0.00 33.92 4.20
1812 1909 2.860690 TTCGTCGGTCGGAATCAGCG 62.861 60.000 0.00 0.00 40.32 5.18
1824 1921 1.154225 GCTGCACCATTTTCGTCGG 60.154 57.895 0.00 0.00 0.00 4.79
1825 1922 0.453282 CAGCTGCACCATTTTCGTCG 60.453 55.000 0.00 0.00 0.00 5.12
1826 1923 0.109597 CCAGCTGCACCATTTTCGTC 60.110 55.000 8.66 0.00 0.00 4.20
1827 1924 1.959085 CCAGCTGCACCATTTTCGT 59.041 52.632 8.66 0.00 0.00 3.85
1829 1926 1.444895 CGCCAGCTGCACCATTTTC 60.445 57.895 8.66 0.00 41.33 2.29
1832 1929 4.666253 ACCGCCAGCTGCACCATT 62.666 61.111 8.66 0.00 41.33 3.16
1880 1983 4.148825 ATGGTCGTCAGCTCCCGC 62.149 66.667 0.00 0.00 0.00 6.13
1934 2037 1.220477 GTTCTCCTCCTCCAGCAGC 59.780 63.158 0.00 0.00 0.00 5.25
2024 2127 1.348064 TGGTTCTCGAGGTTGGTGAT 58.652 50.000 13.56 0.00 0.00 3.06
2025 2128 1.124780 TTGGTTCTCGAGGTTGGTGA 58.875 50.000 13.56 0.00 0.00 4.02
2026 2129 1.961793 TTTGGTTCTCGAGGTTGGTG 58.038 50.000 13.56 0.00 0.00 4.17
2031 2134 2.036733 TGTCGATTTTGGTTCTCGAGGT 59.963 45.455 13.56 0.00 41.59 3.85
2033 2136 3.575630 TCTGTCGATTTTGGTTCTCGAG 58.424 45.455 5.93 5.93 41.59 4.04
2034 2137 3.653539 TCTGTCGATTTTGGTTCTCGA 57.346 42.857 0.00 0.00 38.95 4.04
2036 2139 6.438763 ACAATTTCTGTCGATTTTGGTTCTC 58.561 36.000 0.00 0.00 29.87 2.87
2056 2169 0.606401 CAGGCAAGACCGGTGACAAT 60.606 55.000 14.63 0.00 46.52 2.71
2057 2170 1.227823 CAGGCAAGACCGGTGACAA 60.228 57.895 14.63 0.00 46.52 3.18
2061 2183 2.859273 CTAGCCAGGCAAGACCGGTG 62.859 65.000 14.63 0.00 46.52 4.94
2063 2185 2.187946 CTAGCCAGGCAAGACCGG 59.812 66.667 15.80 0.00 46.52 5.28
2064 2186 2.512515 GCTAGCCAGGCAAGACCG 60.513 66.667 15.80 0.00 46.52 4.79
2066 2188 0.179936 ATCAGCTAGCCAGGCAAGAC 59.820 55.000 15.80 0.00 0.00 3.01
2096 2218 1.209128 CCGCCGTATCACACAAGATC 58.791 55.000 0.00 0.00 0.00 2.75
2097 2219 0.179084 CCCGCCGTATCACACAAGAT 60.179 55.000 0.00 0.00 0.00 2.40
2099 2221 2.461110 GCCCGCCGTATCACACAAG 61.461 63.158 0.00 0.00 0.00 3.16
2100 2222 2.435234 GCCCGCCGTATCACACAA 60.435 61.111 0.00 0.00 0.00 3.33
2251 2373 2.093711 GTCCTCCAGCTCTTCTTCTTCC 60.094 54.545 0.00 0.00 0.00 3.46
2447 2569 1.153005 CAGCAGCTCATTCTCCCCC 60.153 63.158 0.00 0.00 0.00 5.40
2448 2570 1.153005 CCAGCAGCTCATTCTCCCC 60.153 63.158 0.00 0.00 0.00 4.81
2449 2571 1.153005 CCCAGCAGCTCATTCTCCC 60.153 63.158 0.00 0.00 0.00 4.30
2450 2572 0.747283 CACCCAGCAGCTCATTCTCC 60.747 60.000 0.00 0.00 0.00 3.71
2451 2573 0.747283 CCACCCAGCAGCTCATTCTC 60.747 60.000 0.00 0.00 0.00 2.87
2452 2574 1.302285 CCACCCAGCAGCTCATTCT 59.698 57.895 0.00 0.00 0.00 2.40
2453 2575 1.001641 ACCACCCAGCAGCTCATTC 60.002 57.895 0.00 0.00 0.00 2.67
2454 2576 1.303888 CACCACCCAGCAGCTCATT 60.304 57.895 0.00 0.00 0.00 2.57
2455 2577 2.353958 CACCACCCAGCAGCTCAT 59.646 61.111 0.00 0.00 0.00 2.90
2456 2578 3.170672 ACACCACCCAGCAGCTCA 61.171 61.111 0.00 0.00 0.00 4.26
2457 2579 2.670934 CACACCACCCAGCAGCTC 60.671 66.667 0.00 0.00 0.00 4.09
2458 2580 2.965716 GAACACACCACCCAGCAGCT 62.966 60.000 0.00 0.00 0.00 4.24
2459 2581 2.519302 AACACACCACCCAGCAGC 60.519 61.111 0.00 0.00 0.00 5.25
2460 2582 1.898574 GGAACACACCACCCAGCAG 60.899 63.158 0.00 0.00 0.00 4.24
2461 2583 2.194597 GGAACACACCACCCAGCA 59.805 61.111 0.00 0.00 0.00 4.41
2462 2584 0.827507 ATTGGAACACACCACCCAGC 60.828 55.000 0.00 0.00 39.29 4.85
2463 2585 0.961019 CATTGGAACACACCACCCAG 59.039 55.000 0.00 0.00 39.29 4.45
2464 2586 0.468958 CCATTGGAACACACCACCCA 60.469 55.000 0.00 0.00 39.29 4.51
2465 2587 0.469144 ACCATTGGAACACACCACCC 60.469 55.000 10.37 0.00 39.29 4.61
2466 2588 0.673437 CACCATTGGAACACACCACC 59.327 55.000 10.37 0.00 39.29 4.61
2477 2599 2.417243 GCCGAAGAAATTCCACCATTGG 60.417 50.000 0.00 0.00 45.56 3.16
2478 2600 2.230992 TGCCGAAGAAATTCCACCATTG 59.769 45.455 0.00 0.00 0.00 2.82
2479 2601 2.524306 TGCCGAAGAAATTCCACCATT 58.476 42.857 0.00 0.00 0.00 3.16
2480 2602 2.214376 TGCCGAAGAAATTCCACCAT 57.786 45.000 0.00 0.00 0.00 3.55
2481 2603 1.818060 CATGCCGAAGAAATTCCACCA 59.182 47.619 0.00 0.00 0.00 4.17
2482 2604 1.134946 CCATGCCGAAGAAATTCCACC 59.865 52.381 0.00 0.00 0.00 4.61
2483 2605 1.818674 ACCATGCCGAAGAAATTCCAC 59.181 47.619 0.00 0.00 0.00 4.02
2484 2606 2.214376 ACCATGCCGAAGAAATTCCA 57.786 45.000 0.00 0.00 0.00 3.53
2485 2607 2.477863 CGAACCATGCCGAAGAAATTCC 60.478 50.000 0.00 0.00 0.00 3.01
2487 2609 1.472480 CCGAACCATGCCGAAGAAATT 59.528 47.619 2.62 0.00 0.00 1.82
2491 2613 2.435938 GCCGAACCATGCCGAAGA 60.436 61.111 2.62 0.00 0.00 2.87
2494 2616 0.321741 TAAAAGCCGAACCATGCCGA 60.322 50.000 2.62 0.00 0.00 5.54
2500 2622 2.645802 ACAACTGTAAAAGCCGAACCA 58.354 42.857 0.00 0.00 0.00 3.67
2504 2641 3.440228 GCAAAACAACTGTAAAAGCCGA 58.560 40.909 0.00 0.00 0.00 5.54
2505 2642 2.215363 CGCAAAACAACTGTAAAAGCCG 59.785 45.455 0.00 0.00 0.00 5.52
2508 2645 4.491763 GCAACCGCAAAACAACTGTAAAAG 60.492 41.667 0.00 0.00 38.36 2.27
2511 2648 2.531206 GCAACCGCAAAACAACTGTAA 58.469 42.857 0.00 0.00 38.36 2.41
2513 2650 0.800300 CGCAACCGCAAAACAACTGT 60.800 50.000 0.00 0.00 38.40 3.55
2515 2652 0.800300 CACGCAACCGCAAAACAACT 60.800 50.000 0.00 0.00 38.40 3.16
2519 2656 1.807242 GAAGCACGCAACCGCAAAAC 61.807 55.000 0.00 0.00 38.40 2.43
2520 2657 1.587613 GAAGCACGCAACCGCAAAA 60.588 52.632 0.00 0.00 38.40 2.44
2524 2661 2.662091 AAACTGAAGCACGCAACCGC 62.662 55.000 0.00 0.00 38.22 5.68
2525 2662 0.929824 CAAACTGAAGCACGCAACCG 60.930 55.000 0.00 0.00 41.14 4.44
2526 2663 0.380378 TCAAACTGAAGCACGCAACC 59.620 50.000 0.00 0.00 0.00 3.77
2566 2706 7.285566 CCTCTGAATCTGGATCTGGATAAAAA 58.714 38.462 0.00 0.00 0.00 1.94
2570 2710 3.837146 GCCTCTGAATCTGGATCTGGATA 59.163 47.826 0.00 0.00 0.00 2.59
2571 2711 2.638855 GCCTCTGAATCTGGATCTGGAT 59.361 50.000 0.00 0.00 0.00 3.41
2573 2713 2.048601 AGCCTCTGAATCTGGATCTGG 58.951 52.381 0.00 0.00 0.00 3.86
2575 2715 3.382278 TGAAGCCTCTGAATCTGGATCT 58.618 45.455 0.00 0.00 0.00 2.75
2576 2716 3.731089 CTGAAGCCTCTGAATCTGGATC 58.269 50.000 0.00 0.00 0.00 3.36
2577 2717 2.158784 GCTGAAGCCTCTGAATCTGGAT 60.159 50.000 0.00 0.00 34.31 3.41
2579 2719 1.666054 GCTGAAGCCTCTGAATCTGG 58.334 55.000 0.00 0.00 34.31 3.86
2580 2720 1.288350 CGCTGAAGCCTCTGAATCTG 58.712 55.000 0.00 0.00 37.91 2.90
2582 2722 2.013021 GCGCTGAAGCCTCTGAATC 58.987 57.895 0.00 0.00 37.91 2.52
2583 2723 4.215349 GCGCTGAAGCCTCTGAAT 57.785 55.556 0.00 0.00 37.91 2.57
2609 2817 5.064198 TGTGCAGTTACAACACAGTTTCTAC 59.936 40.000 6.40 0.00 39.29 2.59
2648 2856 1.617850 AGCTTATGGAGAGAGCATCGG 59.382 52.381 0.00 0.00 42.67 4.18
2650 2858 3.573538 TCAGAGCTTATGGAGAGAGCATC 59.426 47.826 0.00 0.00 38.85 3.91
2654 2862 4.464008 AGAGTCAGAGCTTATGGAGAGAG 58.536 47.826 0.00 0.00 0.00 3.20
2655 2863 4.518278 AGAGTCAGAGCTTATGGAGAGA 57.482 45.455 0.00 0.00 0.00 3.10
2656 2864 5.596836 AAAGAGTCAGAGCTTATGGAGAG 57.403 43.478 0.00 0.00 0.00 3.20
2673 2881 6.805271 CAGGATTGCACTGTGATTAAAAAGAG 59.195 38.462 12.86 0.00 0.00 2.85
2714 2922 8.532819 AGTAATAATTAAGTCCCGGAGATCATC 58.467 37.037 0.73 0.00 0.00 2.92
2717 2925 6.590677 GCAGTAATAATTAAGTCCCGGAGATC 59.409 42.308 0.73 0.00 0.00 2.75
2735 2943 5.996513 CAGCCTGAATAGAGAATGCAGTAAT 59.003 40.000 0.00 0.00 39.41 1.89
2737 2945 4.406972 ACAGCCTGAATAGAGAATGCAGTA 59.593 41.667 0.00 0.00 39.41 2.74
2738 2946 3.199508 ACAGCCTGAATAGAGAATGCAGT 59.800 43.478 0.00 0.00 39.41 4.40
2741 2949 3.563390 GGAACAGCCTGAATAGAGAATGC 59.437 47.826 0.00 0.00 0.00 3.56
2742 2950 4.574013 GTGGAACAGCCTGAATAGAGAATG 59.426 45.833 0.00 0.00 41.80 2.67
2743 2951 4.472833 AGTGGAACAGCCTGAATAGAGAAT 59.527 41.667 0.00 0.00 41.80 2.40
2745 2953 3.445008 AGTGGAACAGCCTGAATAGAGA 58.555 45.455 0.00 0.00 41.80 3.10
2746 2954 3.450457 AGAGTGGAACAGCCTGAATAGAG 59.550 47.826 0.00 0.00 41.80 2.43
2747 2955 3.196469 CAGAGTGGAACAGCCTGAATAGA 59.804 47.826 0.00 0.00 41.80 1.98
2750 2958 1.980765 TCAGAGTGGAACAGCCTGAAT 59.019 47.619 0.00 0.00 42.28 2.57
2751 2959 1.423584 TCAGAGTGGAACAGCCTGAA 58.576 50.000 0.00 0.00 42.28 3.02
2753 2961 1.805869 CTTCAGAGTGGAACAGCCTG 58.194 55.000 0.00 0.00 41.80 4.85
2755 2963 0.957888 GGCTTCAGAGTGGAACAGCC 60.958 60.000 0.00 0.00 41.80 4.85
2756 2964 0.036022 AGGCTTCAGAGTGGAACAGC 59.964 55.000 0.00 0.00 41.80 4.40
2758 2966 1.423584 TCAGGCTTCAGAGTGGAACA 58.576 50.000 0.00 0.00 41.43 3.18
2773 3004 2.507058 TCAGAATCATCCCAGGTTCAGG 59.493 50.000 0.00 0.00 0.00 3.86
2800 3031 8.097038 ACTAAATAAACAGAAGCTGTGAGATCA 58.903 33.333 0.22 0.00 44.62 2.92
2832 3063 4.701171 TCACACCTCGGTTTACTTGTTTTT 59.299 37.500 0.00 0.00 0.00 1.94
2833 3064 4.263435 TCACACCTCGGTTTACTTGTTTT 58.737 39.130 0.00 0.00 0.00 2.43
2834 3065 3.876341 TCACACCTCGGTTTACTTGTTT 58.124 40.909 0.00 0.00 0.00 2.83
2835 3066 3.547054 TCACACCTCGGTTTACTTGTT 57.453 42.857 0.00 0.00 0.00 2.83
2836 3067 3.323979 AGATCACACCTCGGTTTACTTGT 59.676 43.478 0.00 0.00 0.00 3.16
2837 3068 3.926616 AGATCACACCTCGGTTTACTTG 58.073 45.455 0.00 0.00 0.00 3.16
2838 3069 4.039973 TCAAGATCACACCTCGGTTTACTT 59.960 41.667 0.00 0.00 0.00 2.24
2839 3070 3.576982 TCAAGATCACACCTCGGTTTACT 59.423 43.478 0.00 0.00 0.00 2.24
2840 3071 3.921677 TCAAGATCACACCTCGGTTTAC 58.078 45.455 0.00 0.00 0.00 2.01
2841 3072 3.616560 GCTCAAGATCACACCTCGGTTTA 60.617 47.826 0.00 0.00 0.00 2.01
2842 3073 2.872038 GCTCAAGATCACACCTCGGTTT 60.872 50.000 0.00 0.00 0.00 3.27
2843 3074 1.338200 GCTCAAGATCACACCTCGGTT 60.338 52.381 0.00 0.00 0.00 4.44
2844 3075 0.247736 GCTCAAGATCACACCTCGGT 59.752 55.000 0.00 0.00 0.00 4.69
2845 3076 0.803768 CGCTCAAGATCACACCTCGG 60.804 60.000 0.00 0.00 0.00 4.63
2846 3077 0.171231 TCGCTCAAGATCACACCTCG 59.829 55.000 0.00 0.00 0.00 4.63
2847 3078 1.470632 CCTCGCTCAAGATCACACCTC 60.471 57.143 0.00 0.00 0.00 3.85
2848 3079 0.534412 CCTCGCTCAAGATCACACCT 59.466 55.000 0.00 0.00 0.00 4.00
2849 3080 0.460987 CCCTCGCTCAAGATCACACC 60.461 60.000 0.00 0.00 0.00 4.16
2850 3081 0.532573 TCCCTCGCTCAAGATCACAC 59.467 55.000 0.00 0.00 0.00 3.82
2851 3082 1.205655 CTTCCCTCGCTCAAGATCACA 59.794 52.381 0.00 0.00 0.00 3.58
2852 3083 1.933247 CTTCCCTCGCTCAAGATCAC 58.067 55.000 0.00 0.00 0.00 3.06
2853 3084 0.176680 GCTTCCCTCGCTCAAGATCA 59.823 55.000 0.00 0.00 0.00 2.92
2854 3085 0.463620 AGCTTCCCTCGCTCAAGATC 59.536 55.000 0.00 0.00 30.49 2.75
2855 3086 1.410882 GTAGCTTCCCTCGCTCAAGAT 59.589 52.381 0.00 0.00 38.86 2.40
2856 3087 0.818296 GTAGCTTCCCTCGCTCAAGA 59.182 55.000 0.00 0.00 38.86 3.02
2857 3088 0.820871 AGTAGCTTCCCTCGCTCAAG 59.179 55.000 0.00 0.00 38.86 3.02
2858 3089 0.532573 CAGTAGCTTCCCTCGCTCAA 59.467 55.000 0.00 0.00 38.86 3.02
2859 3090 0.612174 ACAGTAGCTTCCCTCGCTCA 60.612 55.000 0.00 0.00 38.86 4.26
2860 3091 0.533032 AACAGTAGCTTCCCTCGCTC 59.467 55.000 0.00 0.00 38.86 5.03
2861 3092 0.533032 GAACAGTAGCTTCCCTCGCT 59.467 55.000 0.00 0.00 41.35 4.93
2862 3093 0.533032 AGAACAGTAGCTTCCCTCGC 59.467 55.000 0.00 0.00 0.00 5.03
2863 3094 3.735514 GCTAAGAACAGTAGCTTCCCTCG 60.736 52.174 0.00 0.00 40.71 4.63
2864 3095 3.431068 GGCTAAGAACAGTAGCTTCCCTC 60.431 52.174 0.00 0.00 42.98 4.30
2906 3137 8.812513 TGTCCAGATCATCAAGAAAATGTAAT 57.187 30.769 0.00 0.00 0.00 1.89
2927 3158 5.292101 CCACTTCAAATCGTCTATTCTGTCC 59.708 44.000 0.00 0.00 0.00 4.02
2956 3197 6.037786 AGTTTTAGTACAGCATAGACAGCA 57.962 37.500 0.00 0.00 0.00 4.41
2958 3199 8.861101 GTTGTAGTTTTAGTACAGCATAGACAG 58.139 37.037 0.00 0.00 35.92 3.51
2971 3212 9.585369 AGAGACTAACTAGGTTGTAGTTTTAGT 57.415 33.333 0.00 2.22 38.55 2.24
2976 3217 9.531158 ACATTAGAGACTAACTAGGTTGTAGTT 57.469 33.333 0.00 3.13 40.48 2.24
2977 3218 8.958506 CACATTAGAGACTAACTAGGTTGTAGT 58.041 37.037 0.00 0.00 0.00 2.73
2978 3219 8.958506 ACACATTAGAGACTAACTAGGTTGTAG 58.041 37.037 0.00 0.00 0.00 2.74
2979 3220 8.874744 ACACATTAGAGACTAACTAGGTTGTA 57.125 34.615 0.00 0.00 0.00 2.41
2980 3221 7.670559 AGACACATTAGAGACTAACTAGGTTGT 59.329 37.037 0.00 0.00 0.00 3.32
2981 3222 8.057536 AGACACATTAGAGACTAACTAGGTTG 57.942 38.462 0.00 0.00 0.00 3.77
3029 3270 3.500448 TGTAATTGGTGCTGGAGTGAA 57.500 42.857 0.00 0.00 0.00 3.18
3038 3279 4.439305 TTGCTCATCTTGTAATTGGTGC 57.561 40.909 0.00 0.00 0.00 5.01
3048 3289 2.358267 GCTCCTCCATTTGCTCATCTTG 59.642 50.000 0.00 0.00 0.00 3.02
3054 3295 1.538047 TTGTGCTCCTCCATTTGCTC 58.462 50.000 0.00 0.00 0.00 4.26
3086 3327 5.299279 GTGTGGTGGCACAATAATAGCTTAT 59.701 40.000 20.82 0.00 44.16 1.73
3153 3394 0.472471 AGGAAACGAAGAACCCAGCA 59.528 50.000 0.00 0.00 0.00 4.41
3183 3424 1.204704 TCGCGTTCATCACCTGAGAAT 59.795 47.619 5.77 0.00 34.68 2.40
3189 3430 1.154016 CTCGTCGCGTTCATCACCT 60.154 57.895 5.77 0.00 0.00 4.00
3192 3433 0.731514 GGAACTCGTCGCGTTCATCA 60.732 55.000 24.74 0.00 41.86 3.07
3194 3435 1.800315 CGGAACTCGTCGCGTTCAT 60.800 57.895 24.74 0.00 41.86 2.57
3195 3436 2.427905 CGGAACTCGTCGCGTTCA 60.428 61.111 24.74 0.00 41.86 3.18
3235 3476 3.741388 GCAGGTTATGACACCGATAGCTT 60.741 47.826 0.00 0.00 42.33 3.74
3262 3503 1.132834 TGCTTATGCTCATTTGTGCGG 59.867 47.619 1.96 0.00 40.48 5.69
3264 3505 4.865925 TCATTTGCTTATGCTCATTTGTGC 59.134 37.500 1.96 0.00 40.48 4.57
3265 3506 6.097356 AGTCATTTGCTTATGCTCATTTGTG 58.903 36.000 1.96 0.00 40.48 3.33
3266 3507 6.276832 AGTCATTTGCTTATGCTCATTTGT 57.723 33.333 1.96 0.00 40.48 2.83
3267 3508 7.544566 AGAAAGTCATTTGCTTATGCTCATTTG 59.455 33.333 1.96 0.00 40.48 2.32
3268 3509 7.609056 AGAAAGTCATTTGCTTATGCTCATTT 58.391 30.769 1.96 0.00 40.48 2.32
3271 3512 7.553760 TCATAGAAAGTCATTTGCTTATGCTCA 59.446 33.333 1.96 0.00 40.48 4.26
3272 3513 7.923888 TCATAGAAAGTCATTTGCTTATGCTC 58.076 34.615 1.96 0.00 40.48 4.26
3274 3515 8.400947 TCTTCATAGAAAGTCATTTGCTTATGC 58.599 33.333 0.00 0.00 40.20 3.14
3323 3579 5.241728 GGCTGGAAGAAATTCAACTGTAAGT 59.758 40.000 0.00 0.00 46.07 2.24
3375 3631 4.430765 ATGACCGGTGTCCGCGTC 62.431 66.667 14.63 16.64 46.86 5.19
3396 3652 4.826733 TGCATTGTTTGTGGTGTAGAGAAT 59.173 37.500 0.00 0.00 0.00 2.40
3399 3655 3.814842 TCTGCATTGTTTGTGGTGTAGAG 59.185 43.478 0.00 0.00 31.29 2.43
3403 3659 2.358898 GACTCTGCATTGTTTGTGGTGT 59.641 45.455 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.