Multiple sequence alignment - TraesCS2B01G078800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G078800 chr2B 100.000 2866 0 0 1 2866 44157834 44160699 0.000000e+00 5293.0
1 TraesCS2B01G078800 chr2B 81.835 534 73 17 2345 2863 44277733 44278257 7.340000e-116 427.0
2 TraesCS2B01G078800 chr2A 91.773 2674 129 34 164 2801 29988714 29991332 0.000000e+00 3635.0
3 TraesCS2B01G078800 chr2A 98.125 160 3 0 4 163 225251149 225250990 2.170000e-71 279.0
4 TraesCS2B01G078800 chr2D 92.870 2202 88 22 164 2346 27835981 27838132 0.000000e+00 3133.0
5 TraesCS2B01G078800 chr2D 92.008 513 34 4 2359 2866 27838183 27838693 0.000000e+00 713.0
6 TraesCS2B01G078800 chr4B 80.000 620 113 11 1231 1846 547093972 547094584 5.630000e-122 448.0
7 TraesCS2B01G078800 chr4B 95.322 171 7 1 4 174 32629963 32629794 1.310000e-68 270.0
8 TraesCS2B01G078800 chr3D 77.634 541 104 15 1232 1765 157443377 157442847 2.140000e-81 313.0
9 TraesCS2B01G078800 chr3A 77.532 543 104 15 1232 1765 170811690 170812223 7.710000e-81 311.0
10 TraesCS2B01G078800 chr7D 83.333 324 51 2 1233 1553 501116276 501116599 2.160000e-76 296.0
11 TraesCS2B01G078800 chr7D 95.429 175 8 0 1 175 89589812 89589986 2.170000e-71 279.0
12 TraesCS2B01G078800 chr7D 94.595 37 2 0 327 363 197341561 197341597 1.110000e-04 58.4
13 TraesCS2B01G078800 chr3B 76.965 547 109 15 1232 1771 228690784 228690248 2.160000e-76 296.0
14 TraesCS2B01G078800 chr3B 95.480 177 5 2 1 177 687666847 687666674 2.170000e-71 279.0
15 TraesCS2B01G078800 chr3B 94.318 176 8 2 1 176 579935435 579935608 4.710000e-68 268.0
16 TraesCS2B01G078800 chr3B 75.676 555 105 25 1230 1769 228750720 228750181 1.700000e-62 250.0
17 TraesCS2B01G078800 chr4D 98.148 162 3 0 4 165 24546201 24546040 1.680000e-72 283.0
18 TraesCS2B01G078800 chr7B 97.006 167 3 2 4 168 712010280 712010114 2.170000e-71 279.0
19 TraesCS2B01G078800 chr1D 96.988 166 5 0 1 166 4896483 4896648 2.170000e-71 279.0
20 TraesCS2B01G078800 chr1D 77.273 506 96 14 1232 1729 191374481 191374975 2.170000e-71 279.0
21 TraesCS2B01G078800 chr1B 98.125 160 3 0 4 163 505694574 505694415 2.170000e-71 279.0
22 TraesCS2B01G078800 chr5D 80.615 325 59 3 1231 1553 499246583 499246261 6.130000e-62 248.0
23 TraesCS2B01G078800 chr5D 75.298 336 67 13 1227 1552 526572117 526571788 2.300000e-31 147.0
24 TraesCS2B01G078800 chr5B 77.252 444 85 13 1117 1553 619927318 619926884 2.210000e-61 246.0
25 TraesCS2B01G078800 chr5B 75.371 337 65 17 1227 1552 662036914 662036585 2.300000e-31 147.0
26 TraesCS2B01G078800 chr5A 80.061 326 61 3 1230 1553 623504298 623503975 3.690000e-59 239.0
27 TraesCS2B01G078800 chr5A 95.556 45 2 0 1117 1161 653717283 653717239 3.960000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G078800 chr2B 44157834 44160699 2865 False 5293 5293 100.000 1 2866 1 chr2B.!!$F1 2865
1 TraesCS2B01G078800 chr2B 44277733 44278257 524 False 427 427 81.835 2345 2863 1 chr2B.!!$F2 518
2 TraesCS2B01G078800 chr2A 29988714 29991332 2618 False 3635 3635 91.773 164 2801 1 chr2A.!!$F1 2637
3 TraesCS2B01G078800 chr2D 27835981 27838693 2712 False 1923 3133 92.439 164 2866 2 chr2D.!!$F1 2702
4 TraesCS2B01G078800 chr4B 547093972 547094584 612 False 448 448 80.000 1231 1846 1 chr4B.!!$F1 615
5 TraesCS2B01G078800 chr3D 157442847 157443377 530 True 313 313 77.634 1232 1765 1 chr3D.!!$R1 533
6 TraesCS2B01G078800 chr3A 170811690 170812223 533 False 311 311 77.532 1232 1765 1 chr3A.!!$F1 533
7 TraesCS2B01G078800 chr3B 228690248 228690784 536 True 296 296 76.965 1232 1771 1 chr3B.!!$R1 539
8 TraesCS2B01G078800 chr3B 228750181 228750720 539 True 250 250 75.676 1230 1769 1 chr3B.!!$R2 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.034896 TTCCACGCAAAGGAGAGTCC 59.965 55.0 0.00 0.00 36.33 3.85 F
56 57 0.036010 CACGCAAAGGAGAGTCCCAT 60.036 55.0 1.17 0.00 37.19 4.00 F
61 62 0.042731 AAAGGAGAGTCCCATCCGGA 59.957 55.0 6.61 6.61 40.73 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1163 1189 1.961394 TGAAGTTGACTACTCCTGCGT 59.039 47.619 0.00 0.0 35.54 5.24 R
1787 1828 1.966451 GTTGGGGAAGGTGAGCGTG 60.966 63.158 0.00 0.0 0.00 5.34 R
1977 2030 2.362397 AGAAGATATCACCGCGACACAT 59.638 45.455 8.23 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.885881 AGAAGATCTACATATCCGAATCGC 58.114 41.667 0.00 0.00 0.00 4.58
24 25 4.640789 AGATCTACATATCCGAATCGCC 57.359 45.455 0.00 0.00 0.00 5.54
25 26 4.017126 AGATCTACATATCCGAATCGCCA 58.983 43.478 0.00 0.00 0.00 5.69
26 27 4.462834 AGATCTACATATCCGAATCGCCAA 59.537 41.667 0.00 0.00 0.00 4.52
27 28 4.174411 TCTACATATCCGAATCGCCAAG 57.826 45.455 0.00 0.00 0.00 3.61
28 29 1.512926 ACATATCCGAATCGCCAAGC 58.487 50.000 0.00 0.00 0.00 4.01
29 30 1.070758 ACATATCCGAATCGCCAAGCT 59.929 47.619 0.00 0.00 0.00 3.74
30 31 2.146342 CATATCCGAATCGCCAAGCTT 58.854 47.619 0.00 0.00 0.00 3.74
31 32 1.581934 TATCCGAATCGCCAAGCTTG 58.418 50.000 19.93 19.93 0.00 4.01
32 33 1.718757 ATCCGAATCGCCAAGCTTGC 61.719 55.000 21.43 14.85 0.00 4.01
33 34 2.100991 CGAATCGCCAAGCTTGCC 59.899 61.111 21.43 9.45 0.00 4.52
34 35 2.401766 CGAATCGCCAAGCTTGCCT 61.402 57.895 21.43 2.43 0.00 4.75
35 36 1.885871 GAATCGCCAAGCTTGCCTT 59.114 52.632 21.43 10.35 0.00 4.35
36 37 0.179153 GAATCGCCAAGCTTGCCTTC 60.179 55.000 21.43 14.81 0.00 3.46
37 38 1.598701 AATCGCCAAGCTTGCCTTCC 61.599 55.000 21.43 5.26 0.00 3.46
38 39 2.769652 ATCGCCAAGCTTGCCTTCCA 62.770 55.000 21.43 1.33 0.00 3.53
39 40 2.653115 GCCAAGCTTGCCTTCCAC 59.347 61.111 21.43 0.12 0.00 4.02
40 41 2.956987 CCAAGCTTGCCTTCCACG 59.043 61.111 21.43 0.62 0.00 4.94
41 42 2.256461 CAAGCTTGCCTTCCACGC 59.744 61.111 14.65 0.00 38.87 5.34
42 43 2.203337 AAGCTTGCCTTCCACGCA 60.203 55.556 0.00 0.00 40.87 5.24
43 44 1.827789 AAGCTTGCCTTCCACGCAA 60.828 52.632 0.00 0.00 43.71 4.85
44 45 1.391157 AAGCTTGCCTTCCACGCAAA 61.391 50.000 0.00 0.00 45.11 3.68
45 46 1.372128 GCTTGCCTTCCACGCAAAG 60.372 57.895 0.00 0.00 45.11 2.77
46 47 1.286880 CTTGCCTTCCACGCAAAGG 59.713 57.895 6.69 6.69 45.11 3.11
47 48 1.152860 TTGCCTTCCACGCAAAGGA 60.153 52.632 13.57 0.00 45.15 3.36
48 49 1.172180 TTGCCTTCCACGCAAAGGAG 61.172 55.000 13.57 0.00 45.15 3.69
49 50 1.302511 GCCTTCCACGCAAAGGAGA 60.303 57.895 13.57 0.00 45.15 3.71
50 51 1.301677 GCCTTCCACGCAAAGGAGAG 61.302 60.000 13.57 3.40 45.15 3.20
51 52 0.035458 CCTTCCACGCAAAGGAGAGT 59.965 55.000 5.37 0.00 45.15 3.24
52 53 1.433534 CTTCCACGCAAAGGAGAGTC 58.566 55.000 0.00 0.00 36.33 3.36
53 54 0.034896 TTCCACGCAAAGGAGAGTCC 59.965 55.000 0.00 0.00 36.33 3.85
54 55 1.376037 CCACGCAAAGGAGAGTCCC 60.376 63.158 0.00 0.00 37.19 4.46
55 56 1.371183 CACGCAAAGGAGAGTCCCA 59.629 57.895 1.17 0.00 37.19 4.37
56 57 0.036010 CACGCAAAGGAGAGTCCCAT 60.036 55.000 1.17 0.00 37.19 4.00
57 58 0.250513 ACGCAAAGGAGAGTCCCATC 59.749 55.000 1.17 0.00 37.19 3.51
58 59 0.462759 CGCAAAGGAGAGTCCCATCC 60.463 60.000 1.17 0.00 37.19 3.51
59 60 0.462759 GCAAAGGAGAGTCCCATCCG 60.463 60.000 1.17 0.00 40.73 4.18
60 61 0.179000 CAAAGGAGAGTCCCATCCGG 59.821 60.000 0.00 0.00 40.73 5.14
61 62 0.042731 AAAGGAGAGTCCCATCCGGA 59.957 55.000 6.61 6.61 40.73 5.14
68 69 2.357446 TCCCATCCGGACACGAGA 59.643 61.111 6.12 0.00 44.60 4.04
69 70 2.050350 TCCCATCCGGACACGAGAC 61.050 63.158 6.12 0.00 44.60 3.36
70 71 2.102357 CCATCCGGACACGAGACG 59.898 66.667 6.12 0.00 44.60 4.18
71 72 2.404186 CCATCCGGACACGAGACGA 61.404 63.158 6.12 0.00 44.60 4.20
72 73 1.504900 CATCCGGACACGAGACGAA 59.495 57.895 6.12 0.00 44.60 3.85
73 74 0.523546 CATCCGGACACGAGACGAAG 60.524 60.000 6.12 0.00 44.60 3.79
74 75 0.959372 ATCCGGACACGAGACGAAGT 60.959 55.000 6.12 0.00 45.45 3.01
92 93 7.820044 ACGAAGTCTTCAATCTTGTATCTTC 57.180 36.000 12.99 0.00 29.74 2.87
93 94 7.378966 ACGAAGTCTTCAATCTTGTATCTTCA 58.621 34.615 12.99 0.00 29.74 3.02
94 95 8.037758 ACGAAGTCTTCAATCTTGTATCTTCAT 58.962 33.333 12.99 0.00 29.74 2.57
95 96 9.521503 CGAAGTCTTCAATCTTGTATCTTCATA 57.478 33.333 12.99 0.00 32.10 2.15
99 100 9.255304 GTCTTCAATCTTGTATCTTCATAGTCC 57.745 37.037 0.00 0.00 0.00 3.85
100 101 8.981659 TCTTCAATCTTGTATCTTCATAGTCCA 58.018 33.333 0.00 0.00 0.00 4.02
101 102 9.605275 CTTCAATCTTGTATCTTCATAGTCCAA 57.395 33.333 0.00 0.00 0.00 3.53
102 103 8.948631 TCAATCTTGTATCTTCATAGTCCAAC 57.051 34.615 0.00 0.00 0.00 3.77
103 104 8.539544 TCAATCTTGTATCTTCATAGTCCAACA 58.460 33.333 0.00 0.00 0.00 3.33
104 105 8.824781 CAATCTTGTATCTTCATAGTCCAACAG 58.175 37.037 0.00 0.00 0.00 3.16
105 106 7.482169 TCTTGTATCTTCATAGTCCAACAGT 57.518 36.000 0.00 0.00 0.00 3.55
106 107 7.548097 TCTTGTATCTTCATAGTCCAACAGTC 58.452 38.462 0.00 0.00 0.00 3.51
107 108 6.222038 TGTATCTTCATAGTCCAACAGTCC 57.778 41.667 0.00 0.00 0.00 3.85
108 109 5.719563 TGTATCTTCATAGTCCAACAGTCCA 59.280 40.000 0.00 0.00 0.00 4.02
109 110 4.808414 TCTTCATAGTCCAACAGTCCAG 57.192 45.455 0.00 0.00 0.00 3.86
110 111 3.055819 TCTTCATAGTCCAACAGTCCAGC 60.056 47.826 0.00 0.00 0.00 4.85
111 112 1.555075 TCATAGTCCAACAGTCCAGCC 59.445 52.381 0.00 0.00 0.00 4.85
112 113 1.278985 CATAGTCCAACAGTCCAGCCA 59.721 52.381 0.00 0.00 0.00 4.75
113 114 1.429930 TAGTCCAACAGTCCAGCCAA 58.570 50.000 0.00 0.00 0.00 4.52
114 115 0.550914 AGTCCAACAGTCCAGCCAAA 59.449 50.000 0.00 0.00 0.00 3.28
115 116 0.954452 GTCCAACAGTCCAGCCAAAG 59.046 55.000 0.00 0.00 0.00 2.77
116 117 0.550914 TCCAACAGTCCAGCCAAAGT 59.449 50.000 0.00 0.00 0.00 2.66
117 118 1.771854 TCCAACAGTCCAGCCAAAGTA 59.228 47.619 0.00 0.00 0.00 2.24
118 119 2.375174 TCCAACAGTCCAGCCAAAGTAT 59.625 45.455 0.00 0.00 0.00 2.12
119 120 3.585289 TCCAACAGTCCAGCCAAAGTATA 59.415 43.478 0.00 0.00 0.00 1.47
120 121 4.227300 TCCAACAGTCCAGCCAAAGTATAT 59.773 41.667 0.00 0.00 0.00 0.86
121 122 5.427157 TCCAACAGTCCAGCCAAAGTATATA 59.573 40.000 0.00 0.00 0.00 0.86
122 123 5.760253 CCAACAGTCCAGCCAAAGTATATAG 59.240 44.000 0.00 0.00 0.00 1.31
123 124 6.349300 CAACAGTCCAGCCAAAGTATATAGT 58.651 40.000 0.00 0.00 0.00 2.12
124 125 6.163135 ACAGTCCAGCCAAAGTATATAGTC 57.837 41.667 0.00 0.00 0.00 2.59
125 126 5.070580 ACAGTCCAGCCAAAGTATATAGTCC 59.929 44.000 0.00 0.00 0.00 3.85
126 127 4.281182 AGTCCAGCCAAAGTATATAGTCCG 59.719 45.833 0.00 0.00 0.00 4.79
127 128 3.576982 TCCAGCCAAAGTATATAGTCCGG 59.423 47.826 0.00 0.00 0.00 5.14
128 129 3.326747 CAGCCAAAGTATATAGTCCGGC 58.673 50.000 17.03 17.03 38.60 6.13
129 130 3.240302 AGCCAAAGTATATAGTCCGGCT 58.760 45.455 19.90 19.90 43.65 5.52
130 131 3.006967 AGCCAAAGTATATAGTCCGGCTG 59.993 47.826 22.87 5.00 46.53 4.85
131 132 3.244112 GCCAAAGTATATAGTCCGGCTGT 60.244 47.826 17.30 0.00 35.39 4.40
132 133 4.557205 CCAAAGTATATAGTCCGGCTGTC 58.443 47.826 0.00 0.00 0.00 3.51
133 134 4.557205 CAAAGTATATAGTCCGGCTGTCC 58.443 47.826 0.00 0.00 0.00 4.02
143 144 2.509422 GGCTGTCCGAATACCCCC 59.491 66.667 0.00 0.00 0.00 5.40
144 145 2.070650 GGCTGTCCGAATACCCCCT 61.071 63.158 0.00 0.00 0.00 4.79
145 146 0.761702 GGCTGTCCGAATACCCCCTA 60.762 60.000 0.00 0.00 0.00 3.53
146 147 1.125633 GCTGTCCGAATACCCCCTAA 58.874 55.000 0.00 0.00 0.00 2.69
147 148 1.697982 GCTGTCCGAATACCCCCTAAT 59.302 52.381 0.00 0.00 0.00 1.73
148 149 2.289506 GCTGTCCGAATACCCCCTAATC 60.290 54.545 0.00 0.00 0.00 1.75
149 150 2.302157 CTGTCCGAATACCCCCTAATCC 59.698 54.545 0.00 0.00 0.00 3.01
150 151 2.332117 GTCCGAATACCCCCTAATCCA 58.668 52.381 0.00 0.00 0.00 3.41
151 152 2.302157 GTCCGAATACCCCCTAATCCAG 59.698 54.545 0.00 0.00 0.00 3.86
152 153 1.628846 CCGAATACCCCCTAATCCAGG 59.371 57.143 0.00 0.00 45.07 4.45
168 169 2.037527 GGACTCCCTCACGGACCT 59.962 66.667 0.00 0.00 34.86 3.85
187 188 3.075005 ACCGTCGCCAGCACCTAT 61.075 61.111 0.00 0.00 0.00 2.57
189 190 2.173669 CCGTCGCCAGCACCTATTG 61.174 63.158 0.00 0.00 0.00 1.90
272 273 2.125512 CCCCTCGGTCGCTTTCAG 60.126 66.667 0.00 0.00 0.00 3.02
294 295 2.280552 CGACACGAGGGAAAGGGGA 61.281 63.158 0.00 0.00 0.00 4.81
358 359 5.653769 CCCTTCAATACAGACATCCAAACAT 59.346 40.000 0.00 0.00 0.00 2.71
375 376 4.989279 AACATAGCGCCATCATTTCTTT 57.011 36.364 2.29 0.00 0.00 2.52
423 426 4.080526 CCCGGACTATATTAATTCCTGGGG 60.081 50.000 0.73 11.36 37.86 4.96
429 432 8.615705 GGACTATATTAATTCCTGGGGATCTTT 58.384 37.037 0.00 0.00 0.00 2.52
475 482 3.638627 GGCCCTATGAAAATCCAAGGAAG 59.361 47.826 0.00 0.00 0.00 3.46
506 520 1.102222 TGTGTACCCACGGCCAAAAC 61.102 55.000 2.24 0.00 44.92 2.43
540 559 2.845784 TGTGCAGCACAGGGGAAT 59.154 55.556 24.84 0.00 39.62 3.01
563 582 2.831742 AAGCCCGGATCTACGCGA 60.832 61.111 15.93 0.00 0.00 5.87
602 628 1.623359 TGCAAATTAAACGCCGCATC 58.377 45.000 0.00 0.00 0.00 3.91
603 629 0.920664 GCAAATTAAACGCCGCATCC 59.079 50.000 0.00 0.00 0.00 3.51
604 630 1.555477 CAAATTAAACGCCGCATCCC 58.445 50.000 0.00 0.00 0.00 3.85
605 631 0.099791 AAATTAAACGCCGCATCCCG 59.900 50.000 0.00 0.00 0.00 5.14
606 632 2.331019 AATTAAACGCCGCATCCCGC 62.331 55.000 0.00 0.00 35.03 6.13
607 633 4.761845 TAAACGCCGCATCCCGCA 62.762 61.111 0.00 0.00 42.60 5.69
636 662 3.374402 AGCCTCGACCCGACACAG 61.374 66.667 0.00 0.00 0.00 3.66
680 706 4.820744 CCCGGGAACATGGGCAGG 62.821 72.222 18.48 0.00 38.69 4.85
781 807 2.989824 CTCGTGTCCCCGTCACCT 60.990 66.667 0.00 0.00 32.86 4.00
783 809 3.299977 CGTGTCCCCGTCACCTCA 61.300 66.667 0.00 0.00 32.86 3.86
815 841 1.295101 CACACACTCCACCCGCATA 59.705 57.895 0.00 0.00 0.00 3.14
899 925 3.825623 GGGCTTCCATCCCCCAGG 61.826 72.222 0.00 0.00 38.70 4.45
900 926 3.825623 GGCTTCCATCCCCCAGGG 61.826 72.222 0.00 0.00 46.11 4.45
901 927 4.529731 GCTTCCATCCCCCAGGGC 62.530 72.222 0.00 0.00 43.94 5.19
965 991 2.591753 CCTGTCATGTCCGGCCAT 59.408 61.111 2.24 0.00 0.00 4.40
1016 1042 2.821366 CATGGGGACGTCAGCTGC 60.821 66.667 18.91 3.23 0.00 5.25
1017 1043 3.005539 ATGGGGACGTCAGCTGCT 61.006 61.111 18.91 0.00 0.00 4.24
1018 1044 3.320879 ATGGGGACGTCAGCTGCTG 62.321 63.158 23.31 23.31 0.00 4.41
1019 1045 4.767255 GGGGACGTCAGCTGCTGG 62.767 72.222 27.79 15.99 31.51 4.85
1020 1046 3.695606 GGGACGTCAGCTGCTGGA 61.696 66.667 27.79 12.97 31.51 3.86
1021 1047 2.433318 GGACGTCAGCTGCTGGAC 60.433 66.667 27.79 21.50 31.51 4.02
1023 1049 4.363990 ACGTCAGCTGCTGGACCG 62.364 66.667 27.79 25.95 31.51 4.79
1024 1050 4.363990 CGTCAGCTGCTGGACCGT 62.364 66.667 27.79 0.00 31.51 4.83
1025 1051 2.433318 GTCAGCTGCTGGACCGTC 60.433 66.667 27.79 9.30 31.51 4.79
1027 1053 2.433838 CAGCTGCTGGACCGTCTG 60.434 66.667 21.71 0.00 0.00 3.51
1028 1054 4.385405 AGCTGCTGGACCGTCTGC 62.385 66.667 0.00 4.52 0.00 4.26
1038 1064 4.016706 CCGTCTGCCCGGTTCCTT 62.017 66.667 0.00 0.00 43.07 3.36
1039 1065 2.742372 CGTCTGCCCGGTTCCTTG 60.742 66.667 0.00 0.00 0.00 3.61
1040 1066 2.359975 GTCTGCCCGGTTCCTTGG 60.360 66.667 0.00 0.00 0.00 3.61
1176 1202 1.328986 GGTACGTACGCAGGAGTAGTC 59.671 57.143 16.72 0.00 0.00 2.59
1866 1907 4.520492 CCACCAACAAGCAGTTCTCTTAAT 59.480 41.667 0.00 0.00 38.74 1.40
1867 1908 5.010012 CCACCAACAAGCAGTTCTCTTAATT 59.990 40.000 0.00 0.00 38.74 1.40
1868 1909 6.206634 CCACCAACAAGCAGTTCTCTTAATTA 59.793 38.462 0.00 0.00 38.74 1.40
1869 1910 7.255451 CCACCAACAAGCAGTTCTCTTAATTAA 60.255 37.037 0.00 0.00 38.74 1.40
1870 1911 8.299570 CACCAACAAGCAGTTCTCTTAATTAAT 58.700 33.333 0.00 0.00 38.74 1.40
1871 1912 8.860088 ACCAACAAGCAGTTCTCTTAATTAATT 58.140 29.630 5.89 5.89 38.74 1.40
1893 1934 8.604640 AATTAGAGACGATCATAAGTACGAGA 57.395 34.615 0.00 0.00 0.00 4.04
1894 1935 8.604640 ATTAGAGACGATCATAAGTACGAGAA 57.395 34.615 0.00 0.00 0.00 2.87
1958 2000 4.271696 TGTCTTTGATCAGTGATCGGTT 57.728 40.909 24.52 0.00 41.51 4.44
2022 2079 2.159296 TGACGAGGTATTGTGTCCATCG 60.159 50.000 0.00 0.00 33.81 3.84
2058 2115 2.842457 CATCCGAGGCTTCATGATGAA 58.158 47.619 16.05 7.73 35.67 2.57
2079 2136 7.887996 TGAACAATATGCCAAAAGTTTCATC 57.112 32.000 0.00 0.00 0.00 2.92
2099 2156 7.465353 TCATCAAATTTGAAGCTATGGTTGA 57.535 32.000 23.91 16.03 41.13 3.18
2100 2157 8.070034 TCATCAAATTTGAAGCTATGGTTGAT 57.930 30.769 23.91 0.79 41.13 2.57
2101 2158 8.533657 TCATCAAATTTGAAGCTATGGTTGATT 58.466 29.630 23.91 0.35 41.13 2.57
2102 2159 9.158233 CATCAAATTTGAAGCTATGGTTGATTT 57.842 29.630 23.91 0.00 41.13 2.17
2103 2160 8.537049 TCAAATTTGAAGCTATGGTTGATTTG 57.463 30.769 18.45 0.00 33.55 2.32
2232 2289 6.973229 AAAGTCAAAAGGCAAATATCATGC 57.027 33.333 5.16 5.16 43.08 4.06
2453 2560 5.601583 TCAGTACCACTGTTAACACTTCA 57.398 39.130 3.59 0.00 46.03 3.02
2493 2600 7.820044 AGATTTACTTCAATCTGTTCTCGAC 57.180 36.000 0.00 0.00 41.20 4.20
2503 2610 6.037830 TCAATCTGTTCTCGACGACATGTATA 59.962 38.462 0.00 0.00 0.00 1.47
2529 2636 1.743394 GGGGAGCTGTATTTTCCAACG 59.257 52.381 0.00 0.00 32.50 4.10
2605 2712 5.630121 TGGTTATGCCGGATATTGATTCTT 58.370 37.500 5.05 0.00 41.21 2.52
2635 2742 5.336849 CCGGCCCTGAAATAAATGTTACAAA 60.337 40.000 0.00 0.00 0.00 2.83
2636 2743 5.575218 CGGCCCTGAAATAAATGTTACAAAC 59.425 40.000 0.00 0.00 0.00 2.93
2651 2764 9.777297 AATGTTACAAACTTTTGCTAAATCCAT 57.223 25.926 1.49 0.00 41.79 3.41
2654 2767 9.255304 GTTACAAACTTTTGCTAAATCCATTCA 57.745 29.630 1.49 0.00 41.79 2.57
2730 2847 2.036346 GCTTCTCATTTGGCCAGTTTGT 59.964 45.455 5.11 0.00 0.00 2.83
2743 2860 3.859386 GCCAGTTTGTTTTGAGTGTCAAG 59.141 43.478 0.00 0.00 37.70 3.02
2810 2927 2.539277 TAGGCCCAAGATCCCGGACA 62.539 60.000 0.73 0.00 0.00 4.02
2813 2930 0.035458 GCCCAAGATCCCGGACATAG 59.965 60.000 0.73 0.00 0.00 2.23
2826 2943 0.168128 GACATAGTGCCGTTGGTTGC 59.832 55.000 0.00 0.00 0.00 4.17
2846 2963 4.202441 TGCTAGAATGGAAAGGAGATTGC 58.798 43.478 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.163602 GGCGATTCGGATATGTAGATCTTCT 60.164 44.000 8.34 0.00 0.00 2.85
1 2 5.038033 GGCGATTCGGATATGTAGATCTTC 58.962 45.833 8.34 0.00 0.00 2.87
2 3 4.462834 TGGCGATTCGGATATGTAGATCTT 59.537 41.667 8.34 0.00 0.00 2.40
3 4 4.017126 TGGCGATTCGGATATGTAGATCT 58.983 43.478 8.34 0.00 0.00 2.75
4 5 4.371855 TGGCGATTCGGATATGTAGATC 57.628 45.455 8.34 0.00 0.00 2.75
5 6 4.748892 CTTGGCGATTCGGATATGTAGAT 58.251 43.478 8.34 0.00 0.00 1.98
6 7 3.614150 GCTTGGCGATTCGGATATGTAGA 60.614 47.826 8.34 0.00 0.00 2.59
7 8 2.668457 GCTTGGCGATTCGGATATGTAG 59.332 50.000 8.34 0.00 0.00 2.74
8 9 2.299013 AGCTTGGCGATTCGGATATGTA 59.701 45.455 8.34 0.00 0.00 2.29
9 10 1.070758 AGCTTGGCGATTCGGATATGT 59.929 47.619 8.34 0.00 0.00 2.29
10 11 1.800805 AGCTTGGCGATTCGGATATG 58.199 50.000 8.34 0.00 0.00 1.78
11 12 2.146342 CAAGCTTGGCGATTCGGATAT 58.854 47.619 19.14 0.00 0.00 1.63
12 13 1.581934 CAAGCTTGGCGATTCGGATA 58.418 50.000 19.14 0.00 0.00 2.59
13 14 1.718757 GCAAGCTTGGCGATTCGGAT 61.719 55.000 27.10 0.00 0.00 4.18
14 15 2.398554 GCAAGCTTGGCGATTCGGA 61.399 57.895 27.10 0.00 0.00 4.55
15 16 2.100991 GCAAGCTTGGCGATTCGG 59.899 61.111 27.10 0.00 0.00 4.30
16 17 2.100991 GGCAAGCTTGGCGATTCG 59.899 61.111 33.68 4.49 43.97 3.34
23 24 2.956987 CGTGGAAGGCAAGCTTGG 59.043 61.111 27.10 9.80 0.00 3.61
32 33 0.035458 ACTCTCCTTTGCGTGGAAGG 59.965 55.000 7.12 7.12 44.06 3.46
33 34 1.433534 GACTCTCCTTTGCGTGGAAG 58.566 55.000 0.00 0.00 32.61 3.46
34 35 0.034896 GGACTCTCCTTTGCGTGGAA 59.965 55.000 0.00 0.00 32.53 3.53
35 36 1.671742 GGACTCTCCTTTGCGTGGA 59.328 57.895 0.00 0.00 32.53 4.02
36 37 1.376037 GGGACTCTCCTTTGCGTGG 60.376 63.158 0.00 0.00 36.57 4.94
37 38 0.036010 ATGGGACTCTCCTTTGCGTG 60.036 55.000 0.00 0.00 36.57 5.34
38 39 0.250513 GATGGGACTCTCCTTTGCGT 59.749 55.000 0.00 0.00 36.57 5.24
39 40 0.462759 GGATGGGACTCTCCTTTGCG 60.463 60.000 0.00 0.00 36.57 4.85
40 41 0.462759 CGGATGGGACTCTCCTTTGC 60.463 60.000 0.00 0.00 36.57 3.68
41 42 0.179000 CCGGATGGGACTCTCCTTTG 59.821 60.000 0.00 0.00 38.47 2.77
42 43 0.042731 TCCGGATGGGACTCTCCTTT 59.957 55.000 0.00 0.00 40.94 3.11
43 44 1.704082 TCCGGATGGGACTCTCCTT 59.296 57.895 0.00 0.00 40.94 3.36
44 45 3.440023 TCCGGATGGGACTCTCCT 58.560 61.111 0.00 0.00 40.94 3.69
51 52 2.050350 GTCTCGTGTCCGGATGGGA 61.050 63.158 7.81 3.17 44.68 4.37
52 53 2.494918 GTCTCGTGTCCGGATGGG 59.505 66.667 7.81 0.18 35.24 4.00
53 54 1.929806 TTCGTCTCGTGTCCGGATGG 61.930 60.000 7.81 0.00 33.95 3.51
54 55 0.523546 CTTCGTCTCGTGTCCGGATG 60.524 60.000 7.81 0.31 33.95 3.51
55 56 0.959372 ACTTCGTCTCGTGTCCGGAT 60.959 55.000 7.81 0.00 33.95 4.18
56 57 1.572085 GACTTCGTCTCGTGTCCGGA 61.572 60.000 0.00 0.00 33.95 5.14
57 58 1.154263 GACTTCGTCTCGTGTCCGG 60.154 63.158 0.00 0.00 33.95 5.14
58 59 0.237761 AAGACTTCGTCTCGTGTCCG 59.762 55.000 0.00 0.00 42.59 4.79
59 60 1.266175 TGAAGACTTCGTCTCGTGTCC 59.734 52.381 10.56 0.00 42.59 4.02
60 61 2.682952 TGAAGACTTCGTCTCGTGTC 57.317 50.000 10.56 8.76 42.59 3.67
61 62 3.253677 AGATTGAAGACTTCGTCTCGTGT 59.746 43.478 14.05 0.00 42.59 4.49
62 63 3.827625 AGATTGAAGACTTCGTCTCGTG 58.172 45.455 14.05 0.00 42.59 4.35
63 64 4.230657 CAAGATTGAAGACTTCGTCTCGT 58.769 43.478 18.03 8.11 42.59 4.18
64 65 4.230657 ACAAGATTGAAGACTTCGTCTCG 58.769 43.478 18.03 12.49 42.59 4.04
65 66 7.254852 AGATACAAGATTGAAGACTTCGTCTC 58.745 38.462 18.03 11.38 42.59 3.36
66 67 7.164230 AGATACAAGATTGAAGACTTCGTCT 57.836 36.000 14.05 14.05 45.64 4.18
67 68 7.542477 TGAAGATACAAGATTGAAGACTTCGTC 59.458 37.037 10.56 10.67 34.37 4.20
68 69 7.378966 TGAAGATACAAGATTGAAGACTTCGT 58.621 34.615 10.56 1.87 34.37 3.85
69 70 7.818493 TGAAGATACAAGATTGAAGACTTCG 57.182 36.000 10.56 0.00 34.37 3.79
73 74 9.255304 GGACTATGAAGATACAAGATTGAAGAC 57.745 37.037 0.00 0.00 0.00 3.01
74 75 8.981659 TGGACTATGAAGATACAAGATTGAAGA 58.018 33.333 0.00 0.00 0.00 2.87
75 76 9.605275 TTGGACTATGAAGATACAAGATTGAAG 57.395 33.333 0.00 0.00 0.00 3.02
76 77 9.383519 GTTGGACTATGAAGATACAAGATTGAA 57.616 33.333 0.00 0.00 0.00 2.69
77 78 8.539544 TGTTGGACTATGAAGATACAAGATTGA 58.460 33.333 0.00 0.00 0.00 2.57
78 79 8.722480 TGTTGGACTATGAAGATACAAGATTG 57.278 34.615 0.00 0.00 0.00 2.67
79 80 8.543774 ACTGTTGGACTATGAAGATACAAGATT 58.456 33.333 0.00 0.00 0.00 2.40
80 81 8.083828 ACTGTTGGACTATGAAGATACAAGAT 57.916 34.615 0.00 0.00 0.00 2.40
81 82 7.363880 GGACTGTTGGACTATGAAGATACAAGA 60.364 40.741 0.00 0.00 0.00 3.02
82 83 6.758886 GGACTGTTGGACTATGAAGATACAAG 59.241 42.308 0.00 0.00 0.00 3.16
83 84 6.212589 TGGACTGTTGGACTATGAAGATACAA 59.787 38.462 0.00 0.00 0.00 2.41
84 85 5.719563 TGGACTGTTGGACTATGAAGATACA 59.280 40.000 0.00 0.00 0.00 2.29
85 86 6.222038 TGGACTGTTGGACTATGAAGATAC 57.778 41.667 0.00 0.00 0.00 2.24
86 87 5.163405 GCTGGACTGTTGGACTATGAAGATA 60.163 44.000 0.00 0.00 0.00 1.98
87 88 4.383552 GCTGGACTGTTGGACTATGAAGAT 60.384 45.833 0.00 0.00 0.00 2.40
88 89 3.055819 GCTGGACTGTTGGACTATGAAGA 60.056 47.826 0.00 0.00 0.00 2.87
89 90 3.265791 GCTGGACTGTTGGACTATGAAG 58.734 50.000 0.00 0.00 0.00 3.02
90 91 2.027192 GGCTGGACTGTTGGACTATGAA 60.027 50.000 0.00 0.00 0.00 2.57
91 92 1.555075 GGCTGGACTGTTGGACTATGA 59.445 52.381 0.00 0.00 0.00 2.15
92 93 1.278985 TGGCTGGACTGTTGGACTATG 59.721 52.381 0.00 0.00 0.00 2.23
93 94 1.656587 TGGCTGGACTGTTGGACTAT 58.343 50.000 0.00 0.00 0.00 2.12
94 95 1.429930 TTGGCTGGACTGTTGGACTA 58.570 50.000 0.00 0.00 0.00 2.59
95 96 0.550914 TTTGGCTGGACTGTTGGACT 59.449 50.000 0.00 0.00 0.00 3.85
96 97 0.954452 CTTTGGCTGGACTGTTGGAC 59.046 55.000 0.00 0.00 0.00 4.02
97 98 0.550914 ACTTTGGCTGGACTGTTGGA 59.449 50.000 0.00 0.00 0.00 3.53
98 99 2.270352 TACTTTGGCTGGACTGTTGG 57.730 50.000 0.00 0.00 0.00 3.77
99 100 6.349300 ACTATATACTTTGGCTGGACTGTTG 58.651 40.000 0.00 0.00 0.00 3.33
100 101 6.408206 GGACTATATACTTTGGCTGGACTGTT 60.408 42.308 0.00 0.00 0.00 3.16
101 102 5.070580 GGACTATATACTTTGGCTGGACTGT 59.929 44.000 0.00 0.00 0.00 3.55
102 103 5.542779 GGACTATATACTTTGGCTGGACTG 58.457 45.833 0.00 0.00 0.00 3.51
103 104 4.281182 CGGACTATATACTTTGGCTGGACT 59.719 45.833 0.00 0.00 0.00 3.85
104 105 4.557205 CGGACTATATACTTTGGCTGGAC 58.443 47.826 0.00 0.00 0.00 4.02
105 106 3.576982 CCGGACTATATACTTTGGCTGGA 59.423 47.826 0.00 0.00 0.00 3.86
106 107 3.864921 GCCGGACTATATACTTTGGCTGG 60.865 52.174 5.05 0.00 38.22 4.85
107 108 3.326747 GCCGGACTATATACTTTGGCTG 58.673 50.000 5.05 0.00 38.22 4.85
108 109 3.240302 AGCCGGACTATATACTTTGGCT 58.760 45.455 5.05 7.63 46.21 4.75
109 110 3.244112 ACAGCCGGACTATATACTTTGGC 60.244 47.826 5.05 0.00 41.50 4.52
110 111 4.557205 GACAGCCGGACTATATACTTTGG 58.443 47.826 5.05 0.00 0.00 3.28
111 112 4.557205 GGACAGCCGGACTATATACTTTG 58.443 47.826 5.05 0.00 0.00 2.77
112 113 4.868314 GGACAGCCGGACTATATACTTT 57.132 45.455 5.05 0.00 0.00 2.66
126 127 0.761702 TAGGGGGTATTCGGACAGCC 60.762 60.000 0.00 0.00 0.00 4.85
127 128 1.125633 TTAGGGGGTATTCGGACAGC 58.874 55.000 0.00 0.00 0.00 4.40
128 129 2.302157 GGATTAGGGGGTATTCGGACAG 59.698 54.545 0.00 0.00 0.00 3.51
129 130 2.332117 GGATTAGGGGGTATTCGGACA 58.668 52.381 0.00 0.00 0.00 4.02
130 131 2.302157 CTGGATTAGGGGGTATTCGGAC 59.698 54.545 0.00 0.00 0.00 4.79
131 132 2.616524 CTGGATTAGGGGGTATTCGGA 58.383 52.381 0.00 0.00 0.00 4.55
132 133 1.628846 CCTGGATTAGGGGGTATTCGG 59.371 57.143 0.00 0.00 43.33 4.30
142 143 2.043227 GTGAGGGAGTCCTGGATTAGG 58.957 57.143 9.58 0.00 45.05 2.69
143 144 1.683917 CGTGAGGGAGTCCTGGATTAG 59.316 57.143 9.58 0.00 45.05 1.73
144 145 1.776662 CGTGAGGGAGTCCTGGATTA 58.223 55.000 9.58 0.00 45.05 1.75
145 146 2.596776 CGTGAGGGAGTCCTGGATT 58.403 57.895 9.58 0.00 45.05 3.01
146 147 4.364318 CGTGAGGGAGTCCTGGAT 57.636 61.111 9.58 0.00 45.05 3.41
219 220 4.201523 GCTACTAGGCCTCCTCCC 57.798 66.667 9.68 0.00 34.61 4.30
272 273 1.446272 CTTTCCCTCGTGTCGCTCC 60.446 63.158 0.00 0.00 0.00 4.70
307 308 6.040955 TCTGTATCGGCAAAGATCTAACATCT 59.959 38.462 0.00 0.00 32.39 2.90
314 315 2.224161 GGCTCTGTATCGGCAAAGATCT 60.224 50.000 0.00 0.00 32.39 2.75
358 359 2.997980 TCCAAAGAAATGATGGCGCTA 58.002 42.857 7.64 0.00 34.13 4.26
375 376 5.868454 TCACTGAGTTCAAGATCAAATCCA 58.132 37.500 0.00 0.00 0.00 3.41
452 455 2.091333 TCCTTGGATTTTCATAGGGCCC 60.091 50.000 16.46 16.46 0.00 5.80
475 482 1.244816 GGTACACAAGGGGAAAGTGC 58.755 55.000 0.00 0.00 36.76 4.40
506 520 0.238289 ACAGTCAAATTCGGCGCTTG 59.762 50.000 7.64 3.27 0.00 4.01
540 559 1.027357 GTAGATCCGGGCTTCGTGTA 58.973 55.000 0.00 0.00 37.11 2.90
602 628 4.818863 TGGATGGGTGCATGCGGG 62.819 66.667 14.09 0.00 0.00 6.13
603 629 3.214123 CTGGATGGGTGCATGCGG 61.214 66.667 14.09 0.00 0.00 5.69
604 630 3.896133 GCTGGATGGGTGCATGCG 61.896 66.667 14.09 0.00 0.00 4.73
605 631 3.534056 GGCTGGATGGGTGCATGC 61.534 66.667 11.82 11.82 0.00 4.06
606 632 1.826921 GAGGCTGGATGGGTGCATG 60.827 63.158 0.00 0.00 0.00 4.06
607 633 2.599597 GAGGCTGGATGGGTGCAT 59.400 61.111 0.00 0.00 0.00 3.96
608 634 4.100084 CGAGGCTGGATGGGTGCA 62.100 66.667 0.00 0.00 0.00 4.57
612 638 3.866582 GGGTCGAGGCTGGATGGG 61.867 72.222 1.57 0.00 0.00 4.00
636 662 4.329545 TGTTGGGCGCCTCTGACC 62.330 66.667 28.56 9.02 0.00 4.02
680 706 1.341852 GGAGATTCTAACGGGAGAGCC 59.658 57.143 0.00 0.00 0.00 4.70
690 716 2.032620 GAGGCTCGTGGGAGATTCTAA 58.967 52.381 0.00 0.00 43.27 2.10
758 784 3.518998 CGGGGACACGAGCTCGAT 61.519 66.667 40.58 27.61 43.02 3.59
875 901 2.107141 GATGGAAGCCCGGACGAG 59.893 66.667 0.73 0.00 34.29 4.18
965 991 3.603158 TGAAGCTTGTGGTATCGCTAA 57.397 42.857 2.10 0.00 31.48 3.09
1023 1049 2.359975 CCAAGGAACCGGGCAGAC 60.360 66.667 6.32 0.00 0.00 3.51
1024 1050 3.646715 CCCAAGGAACCGGGCAGA 61.647 66.667 6.32 0.00 34.63 4.26
1028 1054 3.507377 AACAGCCCAAGGAACCGGG 62.507 63.158 6.32 0.00 43.85 5.73
1029 1055 1.971695 GAACAGCCCAAGGAACCGG 60.972 63.158 0.00 0.00 0.00 5.28
1031 1057 2.626780 GCGAACAGCCCAAGGAACC 61.627 63.158 0.00 0.00 40.81 3.62
1032 1058 2.954611 GCGAACAGCCCAAGGAAC 59.045 61.111 0.00 0.00 40.81 3.62
1036 1062 3.423154 GACCGCGAACAGCCCAAG 61.423 66.667 8.23 0.00 44.76 3.61
1163 1189 1.961394 TGAAGTTGACTACTCCTGCGT 59.039 47.619 0.00 0.00 35.54 5.24
1176 1202 5.163963 TGTTCATCACGATCGAATGAAGTTG 60.164 40.000 31.63 19.05 32.69 3.16
1787 1828 1.966451 GTTGGGGAAGGTGAGCGTG 60.966 63.158 0.00 0.00 0.00 5.34
1867 1908 9.702494 TCTCGTACTTATGATCGTCTCTAATTA 57.298 33.333 0.00 0.00 0.00 1.40
1868 1909 8.604640 TCTCGTACTTATGATCGTCTCTAATT 57.395 34.615 0.00 0.00 0.00 1.40
1869 1910 8.604640 TTCTCGTACTTATGATCGTCTCTAAT 57.395 34.615 0.00 0.00 0.00 1.73
1870 1911 7.710044 ACTTCTCGTACTTATGATCGTCTCTAA 59.290 37.037 0.00 0.00 0.00 2.10
1871 1912 7.208777 ACTTCTCGTACTTATGATCGTCTCTA 58.791 38.462 0.00 0.00 0.00 2.43
1872 1913 6.050432 ACTTCTCGTACTTATGATCGTCTCT 58.950 40.000 0.00 0.00 0.00 3.10
1958 2000 2.702898 TCGATGACCGAACGTTACAA 57.297 45.000 0.00 0.00 45.43 2.41
1977 2030 2.362397 AGAAGATATCACCGCGACACAT 59.638 45.455 8.23 0.00 0.00 3.21
2058 2115 8.851541 ATTTGATGAAACTTTTGGCATATTGT 57.148 26.923 0.00 0.00 0.00 2.71
2079 2136 8.537049 TCAAATCAACCATAGCTTCAAATTTG 57.463 30.769 12.15 12.15 34.50 2.32
2144 2201 7.148423 CGACATGTGTCATATTCCTTTTCAGAA 60.148 37.037 1.15 0.00 44.99 3.02
2145 2202 6.313658 CGACATGTGTCATATTCCTTTTCAGA 59.686 38.462 1.15 0.00 44.99 3.27
2157 2214 3.352648 TCAGAGGACGACATGTGTCATA 58.647 45.455 21.81 5.74 44.99 2.15
2163 2220 1.406069 GCCAATCAGAGGACGACATGT 60.406 52.381 0.00 0.00 0.00 3.21
2176 2233 2.519771 AATTCAGCTCTGGCCAATCA 57.480 45.000 7.01 0.00 39.73 2.57
2232 2289 1.110518 TGCCATATGCTGCCACATGG 61.111 55.000 15.85 15.85 46.60 3.66
2233 2290 0.966179 ATGCCATATGCTGCCACATG 59.034 50.000 0.00 0.00 42.00 3.21
2234 2291 1.343142 CAATGCCATATGCTGCCACAT 59.657 47.619 0.00 0.00 42.00 3.21
2235 2292 0.747852 CAATGCCATATGCTGCCACA 59.252 50.000 0.00 0.00 42.00 4.17
2236 2293 0.032952 CCAATGCCATATGCTGCCAC 59.967 55.000 0.00 0.00 42.00 5.01
2237 2294 0.397394 ACCAATGCCATATGCTGCCA 60.397 50.000 0.00 0.00 42.00 4.92
2238 2295 0.032952 CACCAATGCCATATGCTGCC 59.967 55.000 0.00 0.00 42.00 4.85
2239 2296 0.032952 CCACCAATGCCATATGCTGC 59.967 55.000 0.00 0.00 42.00 5.25
2240 2297 1.694844 TCCACCAATGCCATATGCTG 58.305 50.000 0.00 0.00 42.00 4.41
2241 2298 2.688902 ATCCACCAATGCCATATGCT 57.311 45.000 0.00 0.00 42.00 3.79
2242 2299 3.756933 AAATCCACCAATGCCATATGC 57.243 42.857 0.00 0.00 41.77 3.14
2243 2300 5.069383 TCTCAAAATCCACCAATGCCATATG 59.931 40.000 0.00 0.00 0.00 1.78
2244 2301 5.210430 TCTCAAAATCCACCAATGCCATAT 58.790 37.500 0.00 0.00 0.00 1.78
2245 2302 4.608269 TCTCAAAATCCACCAATGCCATA 58.392 39.130 0.00 0.00 0.00 2.74
2453 2560 4.612264 AAATCTGCTGGCAAGACAAATT 57.388 36.364 0.00 0.00 0.00 1.82
2493 2600 3.575630 CTCCCCACGAATATACATGTCG 58.424 50.000 0.00 1.24 40.56 4.35
2503 2610 3.279434 GAAAATACAGCTCCCCACGAAT 58.721 45.455 0.00 0.00 0.00 3.34
2529 2636 1.227674 GTCCGGATCATGAGGTGGC 60.228 63.158 7.81 0.00 0.00 5.01
2605 2712 1.502690 TATTTCAGGGCCGGAAGCTA 58.497 50.000 18.39 11.81 43.05 3.32
2635 2742 9.558396 TTTCAAATGAATGGATTTAGCAAAAGT 57.442 25.926 0.00 0.00 33.54 2.66
2651 2764 9.445786 GAGTACGAAAATTCACTTTCAAATGAA 57.554 29.630 0.00 0.00 39.09 2.57
2654 2767 7.936584 TGGAGTACGAAAATTCACTTTCAAAT 58.063 30.769 0.00 0.00 35.43 2.32
2730 2847 5.105567 TCTTACCCACTTGACACTCAAAA 57.894 39.130 0.00 0.00 35.73 2.44
2743 2860 3.073274 AGTGAAAGGCATCTTACCCAC 57.927 47.619 0.00 0.00 32.83 4.61
2810 2927 1.553248 TCTAGCAACCAACGGCACTAT 59.447 47.619 0.00 0.00 0.00 2.12
2813 2930 1.135689 CATTCTAGCAACCAACGGCAC 60.136 52.381 0.00 0.00 0.00 5.01
2826 2943 5.700373 GCTAGCAATCTCCTTTCCATTCTAG 59.300 44.000 10.63 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.