Multiple sequence alignment - TraesCS2B01G078600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G078600 chr2B 100.000 3338 0 0 1 3338 44026687 44030024 0.000000e+00 6165.0
1 TraesCS2B01G078600 chr2B 89.883 1453 107 29 867 2294 44109861 44108424 0.000000e+00 1832.0
2 TraesCS2B01G078600 chr2B 87.941 879 69 11 4 845 611427711 611426833 0.000000e+00 1002.0
3 TraesCS2B01G078600 chr2B 88.520 723 45 11 1 690 52691666 52692383 0.000000e+00 841.0
4 TraesCS2B01G078600 chr2B 90.436 596 36 4 1 577 216856970 216857563 0.000000e+00 765.0
5 TraesCS2B01G078600 chr2B 87.812 361 25 4 502 843 52692253 52692613 4.010000e-109 405.0
6 TraesCS2B01G078600 chr2B 76.162 839 159 29 2436 3257 764660432 764661246 1.440000e-108 403.0
7 TraesCS2B01G078600 chr2B 92.222 270 17 3 578 845 216857511 216857778 2.430000e-101 379.0
8 TraesCS2B01G078600 chr2B 77.760 643 122 16 2534 3160 706716578 706715941 3.140000e-100 375.0
9 TraesCS2B01G078600 chr2B 85.609 271 27 7 585 845 800775258 800774990 1.180000e-69 274.0
10 TraesCS2B01G078600 chr2B 84.151 265 23 3 6 251 757242901 757242637 4.300000e-59 239.0
11 TraesCS2B01G078600 chr2B 84.264 197 26 4 2010 2205 47249104 47248912 1.580000e-43 187.0
12 TraesCS2B01G078600 chr2D 92.241 1379 73 16 858 2209 27824722 27823351 0.000000e+00 1923.0
13 TraesCS2B01G078600 chr2D 85.103 725 105 1 1118 1839 29285121 29285845 0.000000e+00 737.0
14 TraesCS2B01G078600 chr2D 81.159 207 34 4 2000 2205 29286247 29286449 9.580000e-36 161.0
15 TraesCS2B01G078600 chr2D 78.173 197 32 7 2534 2728 542747462 542747649 7.570000e-22 115.0
16 TraesCS2B01G078600 chr2D 87.179 78 6 4 2885 2962 28090148 28090221 5.930000e-13 86.1
17 TraesCS2B01G078600 chr2A 90.358 1369 73 31 858 2199 29933580 29934916 0.000000e+00 1742.0
18 TraesCS2B01G078600 chr2A 90.358 1369 73 31 858 2199 29956770 29955434 0.000000e+00 1742.0
19 TraesCS2B01G078600 chr2A 84.521 730 110 1 1113 1839 31597559 31598288 0.000000e+00 719.0
20 TraesCS2B01G078600 chr2A 82.587 201 31 3 2000 2200 31598729 31598925 1.230000e-39 174.0
21 TraesCS2B01G078600 chr3B 89.534 879 54 8 4 847 693650360 693651235 0.000000e+00 1079.0
22 TraesCS2B01G078600 chr3B 78.247 639 118 16 2523 3149 808046108 808045479 1.120000e-104 390.0
23 TraesCS2B01G078600 chr3B 75.418 419 75 16 2738 3134 423871068 423871480 9.520000e-41 178.0
24 TraesCS2B01G078600 chr5B 88.826 877 53 8 4 845 680996798 680995932 0.000000e+00 1035.0
25 TraesCS2B01G078600 chr5B 91.194 511 37 5 6 508 140116689 140116179 0.000000e+00 688.0
26 TraesCS2B01G078600 chr5B 88.697 522 39 8 6 508 509474419 509473899 1.320000e-173 619.0
27 TraesCS2B01G078600 chr5B 76.361 643 121 27 2536 3160 369605320 369605949 1.930000e-82 316.0
28 TraesCS2B01G078600 chr5B 72.800 375 67 13 2609 2972 216390567 216390217 9.860000e-16 95.3
29 TraesCS2B01G078600 chr1B 87.879 891 68 22 4 856 344366726 344365838 0.000000e+00 1011.0
30 TraesCS2B01G078600 chr7B 87.642 882 70 13 1 843 585911370 585912251 0.000000e+00 989.0
31 TraesCS2B01G078600 chr7B 91.275 596 33 6 1 577 586332464 586333059 0.000000e+00 795.0
32 TraesCS2B01G078600 chr7B 91.606 274 17 4 578 845 586333007 586333280 1.130000e-99 374.0
33 TraesCS2B01G078600 chr7B 76.376 436 93 8 2556 2985 460567997 460567566 3.350000e-55 226.0
34 TraesCS2B01G078600 chr6B 90.157 762 51 6 102 847 517460351 517461104 0.000000e+00 970.0
35 TraesCS2B01G078600 chr3D 88.571 525 38 5 6 508 517006438 517006962 4.730000e-173 617.0
36 TraesCS2B01G078600 chr7D 74.587 606 132 16 1224 1818 487739148 487739742 2.570000e-61 246.0
37 TraesCS2B01G078600 chr6D 79.715 281 51 4 1503 1780 449217419 449217142 7.300000e-47 198.0
38 TraesCS2B01G078600 chr7A 77.812 329 55 11 2934 3252 26666667 26666347 1.580000e-43 187.0
39 TraesCS2B01G078600 chr6A 83.529 170 24 3 6 174 132938445 132938279 4.460000e-34 156.0
40 TraesCS2B01G078600 chr6A 97.826 46 1 0 2131 2176 186995362 186995407 2.760000e-11 80.5
41 TraesCS2B01G078600 chr5A 74.424 434 73 23 2735 3134 682922802 682923231 5.770000e-33 152.0
42 TraesCS2B01G078600 chr5D 76.339 224 47 4 2737 2956 562719185 562718964 7.570000e-22 115.0
43 TraesCS2B01G078600 chr4D 90.000 60 6 0 2650 2709 364083425 364083366 9.930000e-11 78.7
44 TraesCS2B01G078600 chr4B 93.878 49 3 0 3128 3176 21231936 21231888 1.280000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G078600 chr2B 44026687 44030024 3337 False 6165.0 6165 100.0000 1 3338 1 chr2B.!!$F1 3337
1 TraesCS2B01G078600 chr2B 44108424 44109861 1437 True 1832.0 1832 89.8830 867 2294 1 chr2B.!!$R1 1427
2 TraesCS2B01G078600 chr2B 611426833 611427711 878 True 1002.0 1002 87.9410 4 845 1 chr2B.!!$R3 841
3 TraesCS2B01G078600 chr2B 52691666 52692613 947 False 623.0 841 88.1660 1 843 2 chr2B.!!$F3 842
4 TraesCS2B01G078600 chr2B 216856970 216857778 808 False 572.0 765 91.3290 1 845 2 chr2B.!!$F4 844
5 TraesCS2B01G078600 chr2B 764660432 764661246 814 False 403.0 403 76.1620 2436 3257 1 chr2B.!!$F2 821
6 TraesCS2B01G078600 chr2B 706715941 706716578 637 True 375.0 375 77.7600 2534 3160 1 chr2B.!!$R4 626
7 TraesCS2B01G078600 chr2D 27823351 27824722 1371 True 1923.0 1923 92.2410 858 2209 1 chr2D.!!$R1 1351
8 TraesCS2B01G078600 chr2D 29285121 29286449 1328 False 449.0 737 83.1310 1118 2205 2 chr2D.!!$F3 1087
9 TraesCS2B01G078600 chr2A 29933580 29934916 1336 False 1742.0 1742 90.3580 858 2199 1 chr2A.!!$F1 1341
10 TraesCS2B01G078600 chr2A 29955434 29956770 1336 True 1742.0 1742 90.3580 858 2199 1 chr2A.!!$R1 1341
11 TraesCS2B01G078600 chr2A 31597559 31598925 1366 False 446.5 719 83.5540 1113 2200 2 chr2A.!!$F2 1087
12 TraesCS2B01G078600 chr3B 693650360 693651235 875 False 1079.0 1079 89.5340 4 847 1 chr3B.!!$F2 843
13 TraesCS2B01G078600 chr3B 808045479 808046108 629 True 390.0 390 78.2470 2523 3149 1 chr3B.!!$R1 626
14 TraesCS2B01G078600 chr5B 680995932 680996798 866 True 1035.0 1035 88.8260 4 845 1 chr5B.!!$R4 841
15 TraesCS2B01G078600 chr5B 140116179 140116689 510 True 688.0 688 91.1940 6 508 1 chr5B.!!$R1 502
16 TraesCS2B01G078600 chr5B 509473899 509474419 520 True 619.0 619 88.6970 6 508 1 chr5B.!!$R3 502
17 TraesCS2B01G078600 chr5B 369605320 369605949 629 False 316.0 316 76.3610 2536 3160 1 chr5B.!!$F1 624
18 TraesCS2B01G078600 chr1B 344365838 344366726 888 True 1011.0 1011 87.8790 4 856 1 chr1B.!!$R1 852
19 TraesCS2B01G078600 chr7B 585911370 585912251 881 False 989.0 989 87.6420 1 843 1 chr7B.!!$F1 842
20 TraesCS2B01G078600 chr7B 586332464 586333280 816 False 584.5 795 91.4405 1 845 2 chr7B.!!$F2 844
21 TraesCS2B01G078600 chr6B 517460351 517461104 753 False 970.0 970 90.1570 102 847 1 chr6B.!!$F1 745
22 TraesCS2B01G078600 chr3D 517006438 517006962 524 False 617.0 617 88.5710 6 508 1 chr3D.!!$F1 502
23 TraesCS2B01G078600 chr7D 487739148 487739742 594 False 246.0 246 74.5870 1224 1818 1 chr7D.!!$F1 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
911 1169 0.032615 TCAAGTGCAACCACCCCTTT 60.033 50.0 0.0 0.0 43.09 3.11 F
2332 2920 0.099968 TGGTCGATCATTCCGTCGTC 59.900 55.0 0.0 0.0 38.85 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2336 2924 0.096976 CGCCTTGTCCGCTTGTATTG 59.903 55.0 0.0 0.0 0.0 1.90 R
3262 3895 0.036952 TCGGGCTTCTTTCTCTGCTG 60.037 55.0 0.0 0.0 0.0 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 87 3.541831 CGCGCGTACGATGTTGCT 61.542 61.111 24.19 0.00 43.93 3.91
145 166 2.036256 GGGCACAGGAGTTGGCAT 59.964 61.111 0.00 0.00 0.00 4.40
154 175 0.322546 GGAGTTGGCATCTTTCCCGT 60.323 55.000 0.00 0.00 0.00 5.28
214 235 3.064987 GAGCGCCGTCTTAGCCTGA 62.065 63.158 2.29 0.00 0.00 3.86
381 413 2.011222 CGGAAGGCGGTTGCTAAATAA 58.989 47.619 0.00 0.00 42.25 1.40
402 434 1.070275 CATGGCGCTAGGAGATGCA 59.930 57.895 7.64 0.00 0.00 3.96
452 484 1.069823 CCTTGACGCCTATGCTCAGAT 59.930 52.381 0.00 0.00 34.43 2.90
482 514 0.247736 GACATCACCGAGGCAGAGTT 59.752 55.000 0.00 0.00 0.00 3.01
535 567 9.530633 ACTATATATCGTTGGAAAAGTCAGTTC 57.469 33.333 0.00 0.00 0.00 3.01
565 597 2.375146 TCGTAGAAGCAGGCTATGTGA 58.625 47.619 0.00 0.00 0.00 3.58
624 737 4.275810 AGAAGTAGGCTATGTGGACGTAA 58.724 43.478 0.00 0.00 0.00 3.18
654 901 0.830648 TATCGTTGGAGAAGCCTGGG 59.169 55.000 0.00 0.00 37.63 4.45
741 997 0.368907 CGCGTGCTACATTTTAGCGT 59.631 50.000 0.00 0.00 43.13 5.07
804 1060 2.073220 CGCGCGCGGTATAGTAGTG 61.073 63.158 43.28 12.95 35.56 2.74
847 1105 4.210120 CGCCTGTTGAAGATGCTCTAATAC 59.790 45.833 0.00 0.00 0.00 1.89
848 1106 4.210120 GCCTGTTGAAGATGCTCTAATACG 59.790 45.833 0.00 0.00 0.00 3.06
849 1107 5.352284 CCTGTTGAAGATGCTCTAATACGT 58.648 41.667 0.00 0.00 0.00 3.57
850 1108 5.460419 CCTGTTGAAGATGCTCTAATACGTC 59.540 44.000 0.00 0.00 0.00 4.34
851 1109 5.961272 TGTTGAAGATGCTCTAATACGTCA 58.039 37.500 0.00 0.00 0.00 4.35
852 1110 6.036470 TGTTGAAGATGCTCTAATACGTCAG 58.964 40.000 0.00 0.00 0.00 3.51
853 1111 4.611943 TGAAGATGCTCTAATACGTCAGC 58.388 43.478 0.00 0.00 0.00 4.26
854 1112 4.097892 TGAAGATGCTCTAATACGTCAGCA 59.902 41.667 0.00 0.00 45.65 4.41
884 1142 8.349983 AGTGTTTAATGATTATATTTGACGCCC 58.650 33.333 0.00 0.00 0.00 6.13
911 1169 0.032615 TCAAGTGCAACCACCCCTTT 60.033 50.000 0.00 0.00 43.09 3.11
916 1174 3.427573 AGTGCAACCACCCCTTTATAAC 58.572 45.455 0.00 0.00 43.09 1.89
917 1175 3.075432 AGTGCAACCACCCCTTTATAACT 59.925 43.478 0.00 0.00 43.09 2.24
918 1176 4.290196 AGTGCAACCACCCCTTTATAACTA 59.710 41.667 0.00 0.00 43.09 2.24
919 1177 5.044402 AGTGCAACCACCCCTTTATAACTAT 60.044 40.000 0.00 0.00 43.09 2.12
920 1178 5.655090 GTGCAACCACCCCTTTATAACTATT 59.345 40.000 0.00 0.00 35.92 1.73
922 1180 7.339976 GTGCAACCACCCCTTTATAACTATTTA 59.660 37.037 0.00 0.00 35.92 1.40
923 1181 7.558444 TGCAACCACCCCTTTATAACTATTTAG 59.442 37.037 0.00 0.00 0.00 1.85
925 1183 9.689501 CAACCACCCCTTTATAACTATTTAGAA 57.310 33.333 0.00 0.00 0.00 2.10
948 1206 6.812879 ACGAAATTAACCTAACCTCCAAAG 57.187 37.500 0.00 0.00 0.00 2.77
949 1207 5.182570 ACGAAATTAACCTAACCTCCAAAGC 59.817 40.000 0.00 0.00 0.00 3.51
953 1214 3.876309 AACCTAACCTCCAAAGCAAGA 57.124 42.857 0.00 0.00 0.00 3.02
968 1229 6.371809 AAAGCAAGACTTTACAAACGATCA 57.628 33.333 0.00 0.00 46.95 2.92
973 1250 7.602644 AGCAAGACTTTACAAACGATCAGAATA 59.397 33.333 0.00 0.00 0.00 1.75
980 1257 7.827819 TTACAAACGATCAGAATAGACCAAG 57.172 36.000 0.00 0.00 0.00 3.61
986 1263 0.924090 CAGAATAGACCAAGCGCGTC 59.076 55.000 8.43 3.38 0.00 5.19
987 1264 0.818296 AGAATAGACCAAGCGCGTCT 59.182 50.000 18.36 18.36 43.05 4.18
1020 1304 2.889678 ACTATAAGTAGCCGTGGGTAGC 59.110 50.000 0.00 0.00 0.00 3.58
1069 1364 0.538057 CCAGCACCACAGACACCAAT 60.538 55.000 0.00 0.00 0.00 3.16
1087 1384 6.998074 ACACCAATAATCTTTCACTGTCTCAA 59.002 34.615 0.00 0.00 0.00 3.02
1090 1387 6.404074 CCAATAATCTTTCACTGTCTCAAGCC 60.404 42.308 0.00 0.00 0.00 4.35
1240 1537 0.389757 TGGACGACGTCACCATCAAA 59.610 50.000 27.77 4.95 33.68 2.69
1345 1642 2.579787 GAGATCACCGGCGTCGTG 60.580 66.667 9.28 8.13 33.95 4.35
1486 1783 1.153628 GGTCGCGCTCACCTACAAT 60.154 57.895 16.17 0.00 0.00 2.71
1645 1942 1.756950 CAGCCCCATGAAGCAGCAT 60.757 57.895 9.24 0.00 0.00 3.79
1839 2142 2.108566 CGAGAGGCAGATGCAGGG 59.891 66.667 7.19 0.00 44.36 4.45
2035 2623 1.225704 GACAGGGGGCATGAAGGAG 59.774 63.158 0.00 0.00 0.00 3.69
2037 2625 2.286732 AGGGGGCATGAAGGAGCT 60.287 61.111 0.00 0.00 0.00 4.09
2090 2678 2.824041 GGCATCACCGCCGACATT 60.824 61.111 0.00 0.00 43.52 2.71
2117 2705 0.686441 TCTCCACCGACGGGATCAAT 60.686 55.000 20.00 0.00 36.97 2.57
2120 2708 0.106708 CCACCGACGGGATCAATGAT 59.893 55.000 20.00 0.00 36.97 2.45
2206 2794 2.366916 GCTCCAGGCTCTAGCTATTTGA 59.633 50.000 9.76 0.00 41.70 2.69
2209 2797 5.220710 TCCAGGCTCTAGCTATTTGATTC 57.779 43.478 1.39 0.00 41.70 2.52
2210 2798 4.040952 TCCAGGCTCTAGCTATTTGATTCC 59.959 45.833 1.39 0.00 41.70 3.01
2211 2799 3.993081 CAGGCTCTAGCTATTTGATTCCG 59.007 47.826 1.39 0.00 41.70 4.30
2212 2800 3.643792 AGGCTCTAGCTATTTGATTCCGT 59.356 43.478 1.39 0.00 41.70 4.69
2215 2803 4.149046 GCTCTAGCTATTTGATTCCGTTCG 59.851 45.833 0.00 0.00 38.21 3.95
2218 2806 1.002792 GCTATTTGATTCCGTTCGGGC 60.003 52.381 11.37 0.01 34.94 6.13
2220 2808 1.094785 ATTTGATTCCGTTCGGGCTG 58.905 50.000 11.37 0.00 34.94 4.85
2221 2809 1.582610 TTTGATTCCGTTCGGGCTGC 61.583 55.000 11.37 0.00 34.94 5.25
2228 2816 2.281484 GTTCGGGCTGCCTGTTCA 60.281 61.111 25.92 9.74 0.00 3.18
2231 2819 0.539438 TTCGGGCTGCCTGTTCATTT 60.539 50.000 25.92 0.00 0.00 2.32
2233 2821 0.109132 CGGGCTGCCTGTTCATTTTC 60.109 55.000 19.55 0.00 0.00 2.29
2234 2822 0.968405 GGGCTGCCTGTTCATTTTCA 59.032 50.000 19.68 0.00 0.00 2.69
2235 2823 1.067354 GGGCTGCCTGTTCATTTTCAG 60.067 52.381 19.68 0.00 0.00 3.02
2238 2826 2.555757 GCTGCCTGTTCATTTTCAGAGT 59.444 45.455 0.00 0.00 34.02 3.24
2240 2828 4.397417 GCTGCCTGTTCATTTTCAGAGTAT 59.603 41.667 0.00 0.00 34.02 2.12
2242 2830 4.701651 TGCCTGTTCATTTTCAGAGTATGG 59.298 41.667 0.00 0.00 34.02 2.74
2246 2834 6.881065 CCTGTTCATTTTCAGAGTATGGAAGA 59.119 38.462 0.00 0.00 34.02 2.87
2248 2836 8.327941 TGTTCATTTTCAGAGTATGGAAGAAG 57.672 34.615 0.00 0.00 0.00 2.85
2250 2838 7.257790 TCATTTTCAGAGTATGGAAGAAGGA 57.742 36.000 0.00 0.00 0.00 3.36
2251 2839 7.865820 TCATTTTCAGAGTATGGAAGAAGGAT 58.134 34.615 0.00 0.00 0.00 3.24
2252 2840 7.772292 TCATTTTCAGAGTATGGAAGAAGGATG 59.228 37.037 0.00 0.00 0.00 3.51
2253 2841 5.620738 TTCAGAGTATGGAAGAAGGATGG 57.379 43.478 0.00 0.00 0.00 3.51
2277 2865 5.420739 GGTACCTATTTCATTTTCAGCCCAA 59.579 40.000 4.06 0.00 0.00 4.12
2282 2870 7.092757 ACCTATTTCATTTTCAGCCCAATTCAT 60.093 33.333 0.00 0.00 0.00 2.57
2286 2874 8.915057 TTTCATTTTCAGCCCAATTCATTTTA 57.085 26.923 0.00 0.00 0.00 1.52
2294 2882 8.593945 TCAGCCCAATTCATTTTAAGAGTATT 57.406 30.769 0.00 0.00 0.00 1.89
2295 2883 9.034800 TCAGCCCAATTCATTTTAAGAGTATTT 57.965 29.630 0.00 0.00 0.00 1.40
2296 2884 9.657419 CAGCCCAATTCATTTTAAGAGTATTTT 57.343 29.630 0.00 0.00 0.00 1.82
2297 2885 9.875691 AGCCCAATTCATTTTAAGAGTATTTTC 57.124 29.630 0.00 0.00 0.00 2.29
2298 2886 9.651913 GCCCAATTCATTTTAAGAGTATTTTCA 57.348 29.630 0.00 0.00 0.00 2.69
2315 2903 9.442047 AGTATTTTCAGAGTTTATCAAGAGTGG 57.558 33.333 0.00 0.00 0.00 4.00
2316 2904 9.220767 GTATTTTCAGAGTTTATCAAGAGTGGT 57.779 33.333 0.00 0.00 0.00 4.16
2317 2905 7.730364 TTTTCAGAGTTTATCAAGAGTGGTC 57.270 36.000 0.00 0.00 0.00 4.02
2318 2906 5.060662 TCAGAGTTTATCAAGAGTGGTCG 57.939 43.478 0.00 0.00 0.00 4.79
2319 2907 4.765339 TCAGAGTTTATCAAGAGTGGTCGA 59.235 41.667 0.00 0.00 0.00 4.20
2320 2908 5.419155 TCAGAGTTTATCAAGAGTGGTCGAT 59.581 40.000 0.00 0.00 0.00 3.59
2321 2909 5.746245 CAGAGTTTATCAAGAGTGGTCGATC 59.254 44.000 0.00 0.00 0.00 3.69
2322 2910 5.419155 AGAGTTTATCAAGAGTGGTCGATCA 59.581 40.000 0.00 0.00 0.00 2.92
2323 2911 6.097554 AGAGTTTATCAAGAGTGGTCGATCAT 59.902 38.462 0.00 0.00 0.00 2.45
2324 2912 6.644347 AGTTTATCAAGAGTGGTCGATCATT 58.356 36.000 0.00 0.00 0.00 2.57
2325 2913 6.758886 AGTTTATCAAGAGTGGTCGATCATTC 59.241 38.462 12.94 12.94 0.00 2.67
2326 2914 3.526931 TCAAGAGTGGTCGATCATTCC 57.473 47.619 16.71 0.00 0.00 3.01
2327 2915 2.159240 TCAAGAGTGGTCGATCATTCCG 60.159 50.000 16.71 9.30 0.00 4.30
2328 2916 1.475403 AGAGTGGTCGATCATTCCGT 58.525 50.000 16.71 0.00 0.00 4.69
2329 2917 1.405821 AGAGTGGTCGATCATTCCGTC 59.594 52.381 16.71 2.77 0.00 4.79
2330 2918 0.100682 AGTGGTCGATCATTCCGTCG 59.899 55.000 0.00 0.00 39.11 5.12
2331 2919 0.179145 GTGGTCGATCATTCCGTCGT 60.179 55.000 0.00 0.00 38.85 4.34
2332 2920 0.099968 TGGTCGATCATTCCGTCGTC 59.900 55.000 0.00 0.00 38.85 4.20
2333 2921 0.099968 GGTCGATCATTCCGTCGTCA 59.900 55.000 0.00 0.00 38.85 4.35
2334 2922 1.269102 GGTCGATCATTCCGTCGTCAT 60.269 52.381 0.00 0.00 38.85 3.06
2335 2923 1.781429 GTCGATCATTCCGTCGTCATG 59.219 52.381 0.00 0.00 38.85 3.07
2336 2924 0.504384 CGATCATTCCGTCGTCATGC 59.496 55.000 0.00 0.00 33.42 4.06
2337 2925 1.570813 GATCATTCCGTCGTCATGCA 58.429 50.000 0.00 0.00 0.00 3.96
2338 2926 1.933181 GATCATTCCGTCGTCATGCAA 59.067 47.619 0.00 0.00 0.00 4.08
2339 2927 2.022764 TCATTCCGTCGTCATGCAAT 57.977 45.000 0.00 0.00 0.00 3.56
2340 2928 3.172229 TCATTCCGTCGTCATGCAATA 57.828 42.857 0.00 0.00 0.00 1.90
2341 2929 2.863740 TCATTCCGTCGTCATGCAATAC 59.136 45.455 0.00 0.00 0.00 1.89
2342 2930 2.371910 TTCCGTCGTCATGCAATACA 57.628 45.000 0.00 0.00 0.00 2.29
2343 2931 2.371910 TCCGTCGTCATGCAATACAA 57.628 45.000 0.00 0.00 0.00 2.41
2344 2932 2.267426 TCCGTCGTCATGCAATACAAG 58.733 47.619 0.00 0.00 0.00 3.16
2345 2933 1.267532 CCGTCGTCATGCAATACAAGC 60.268 52.381 0.00 0.00 0.00 4.01
2346 2934 1.589731 CGTCGTCATGCAATACAAGCG 60.590 52.381 0.00 0.00 33.85 4.68
2347 2935 1.006086 TCGTCATGCAATACAAGCGG 58.994 50.000 0.00 0.00 33.85 5.52
2348 2936 1.006086 CGTCATGCAATACAAGCGGA 58.994 50.000 0.00 0.00 33.85 5.54
2349 2937 1.267532 CGTCATGCAATACAAGCGGAC 60.268 52.381 0.00 0.00 36.31 4.79
2350 2938 1.737236 GTCATGCAATACAAGCGGACA 59.263 47.619 0.00 0.00 38.21 4.02
2351 2939 2.161410 GTCATGCAATACAAGCGGACAA 59.839 45.455 0.00 0.00 38.21 3.18
2352 2940 2.419673 TCATGCAATACAAGCGGACAAG 59.580 45.455 0.00 0.00 33.85 3.16
2353 2941 1.164411 TGCAATACAAGCGGACAAGG 58.836 50.000 0.00 0.00 33.85 3.61
2354 2942 0.179163 GCAATACAAGCGGACAAGGC 60.179 55.000 0.00 0.00 0.00 4.35
2355 2943 0.096976 CAATACAAGCGGACAAGGCG 59.903 55.000 0.00 0.00 35.00 5.52
2356 2944 0.321298 AATACAAGCGGACAAGGCGT 60.321 50.000 0.00 0.00 35.00 5.68
2357 2945 0.321298 ATACAAGCGGACAAGGCGTT 60.321 50.000 0.00 0.00 35.00 4.84
2358 2946 1.225376 TACAAGCGGACAAGGCGTTG 61.225 55.000 17.21 17.21 39.82 4.10
2370 2958 5.710613 ACAAGGCGTTGTTAATTTTTGTG 57.289 34.783 18.62 0.00 45.00 3.33
2371 2959 4.033472 ACAAGGCGTTGTTAATTTTTGTGC 59.967 37.500 18.62 0.00 45.00 4.57
2372 2960 3.786635 AGGCGTTGTTAATTTTTGTGCA 58.213 36.364 0.00 0.00 0.00 4.57
2373 2961 4.376146 AGGCGTTGTTAATTTTTGTGCAT 58.624 34.783 0.00 0.00 0.00 3.96
2374 2962 4.210955 AGGCGTTGTTAATTTTTGTGCATG 59.789 37.500 0.00 0.00 0.00 4.06
2375 2963 3.899531 GCGTTGTTAATTTTTGTGCATGC 59.100 39.130 11.82 11.82 0.00 4.06
2376 2964 4.133128 CGTTGTTAATTTTTGTGCATGCG 58.867 39.130 14.09 0.00 0.00 4.73
2377 2965 3.784883 TGTTAATTTTTGTGCATGCGC 57.215 38.095 24.25 24.25 39.24 6.09
2393 2981 3.354678 GCATGTGGGCGTGAAGTT 58.645 55.556 0.00 0.00 33.58 2.66
2394 2982 2.550487 GCATGTGGGCGTGAAGTTA 58.450 52.632 0.00 0.00 33.58 2.24
2395 2983 0.447801 GCATGTGGGCGTGAAGTTAG 59.552 55.000 0.00 0.00 33.58 2.34
2396 2984 1.086696 CATGTGGGCGTGAAGTTAGG 58.913 55.000 0.00 0.00 33.58 2.69
2397 2985 0.676782 ATGTGGGCGTGAAGTTAGGC 60.677 55.000 0.00 0.00 0.00 3.93
2398 2986 1.302192 GTGGGCGTGAAGTTAGGCA 60.302 57.895 0.00 0.00 33.36 4.75
2399 2987 0.676782 GTGGGCGTGAAGTTAGGCAT 60.677 55.000 0.00 0.00 33.36 4.40
2400 2988 0.392461 TGGGCGTGAAGTTAGGCATC 60.392 55.000 0.00 0.00 33.36 3.91
2401 2989 0.107654 GGGCGTGAAGTTAGGCATCT 60.108 55.000 0.00 0.00 33.36 2.90
2402 2990 1.291132 GGCGTGAAGTTAGGCATCTC 58.709 55.000 0.00 0.00 33.36 2.75
2403 2991 0.924090 GCGTGAAGTTAGGCATCTCG 59.076 55.000 0.00 0.00 35.68 4.04
2404 2992 1.469251 GCGTGAAGTTAGGCATCTCGA 60.469 52.381 0.00 0.00 34.89 4.04
2405 2993 2.876091 CGTGAAGTTAGGCATCTCGAA 58.124 47.619 0.00 0.00 34.89 3.71
2406 2994 2.599082 CGTGAAGTTAGGCATCTCGAAC 59.401 50.000 0.00 0.00 34.89 3.95
2407 2995 2.599082 GTGAAGTTAGGCATCTCGAACG 59.401 50.000 0.00 0.00 0.00 3.95
2408 2996 1.588861 GAAGTTAGGCATCTCGAACGC 59.411 52.381 0.00 0.00 0.00 4.84
2409 2997 0.179108 AGTTAGGCATCTCGAACGCC 60.179 55.000 10.63 10.63 46.62 5.68
2412 3000 4.508128 GGCATCTCGAACGCCCGA 62.508 66.667 7.95 0.00 40.07 5.14
2413 3001 3.255379 GCATCTCGAACGCCCGAC 61.255 66.667 0.00 0.00 34.56 4.79
2414 3002 2.582498 CATCTCGAACGCCCGACC 60.582 66.667 0.00 0.00 34.56 4.79
2415 3003 3.834799 ATCTCGAACGCCCGACCC 61.835 66.667 0.00 0.00 34.56 4.46
2417 3005 4.493747 CTCGAACGCCCGACCCTC 62.494 72.222 0.00 0.00 34.56 4.30
2420 3008 4.060038 GAACGCCCGACCCTCGAA 62.060 66.667 0.00 0.00 43.74 3.71
2421 3009 4.368543 AACGCCCGACCCTCGAAC 62.369 66.667 0.00 0.00 43.74 3.95
2423 3011 4.796231 CGCCCGACCCTCGAACAG 62.796 72.222 0.00 0.00 43.74 3.16
2425 3013 4.452733 CCCGACCCTCGAACAGCC 62.453 72.222 0.00 0.00 43.74 4.85
2426 3014 4.452733 CCGACCCTCGAACAGCCC 62.453 72.222 0.00 0.00 43.74 5.19
2427 3015 4.796231 CGACCCTCGAACAGCCCG 62.796 72.222 0.00 0.00 43.74 6.13
2428 3016 3.692406 GACCCTCGAACAGCCCGT 61.692 66.667 0.00 0.00 0.00 5.28
2429 3017 3.934391 GACCCTCGAACAGCCCGTG 62.934 68.421 0.00 0.00 0.00 4.94
2448 3036 2.175811 GCGGGTGTCATTCAACGC 59.824 61.111 0.00 0.00 43.38 4.84
2459 3047 0.960364 ATTCAACGCGGTCCTGCATT 60.960 50.000 12.47 0.00 34.15 3.56
2461 3049 2.031919 AACGCGGTCCTGCATTGA 59.968 55.556 12.47 0.00 34.15 2.57
2463 3051 0.960364 AACGCGGTCCTGCATTGATT 60.960 50.000 12.47 0.00 34.15 2.57
2465 3053 1.091771 CGCGGTCCTGCATTGATTCT 61.092 55.000 0.00 0.00 34.15 2.40
2469 3057 3.732212 CGGTCCTGCATTGATTCTCATA 58.268 45.455 0.00 0.00 0.00 2.15
2473 3061 2.483106 CCTGCATTGATTCTCATAGCGG 59.517 50.000 0.00 0.00 34.61 5.52
2475 3063 3.544684 TGCATTGATTCTCATAGCGGTT 58.455 40.909 0.00 0.00 31.73 4.44
2477 3065 3.363378 GCATTGATTCTCATAGCGGTTCG 60.363 47.826 0.00 0.00 0.00 3.95
2481 3069 1.179152 TTCTCATAGCGGTTCGGACA 58.821 50.000 0.00 0.00 0.00 4.02
2484 3072 0.108992 TCATAGCGGTTCGGACACAC 60.109 55.000 0.00 0.00 0.00 3.82
2488 3076 0.463116 AGCGGTTCGGACACACTTTT 60.463 50.000 0.00 0.00 0.00 2.27
2494 3082 0.178533 TCGGACACACTTTTTCCCGT 59.821 50.000 0.00 0.00 38.25 5.28
2498 3086 3.251487 CGGACACACTTTTTCCCGTAAAT 59.749 43.478 0.00 0.00 33.02 1.40
2500 3088 4.276431 GGACACACTTTTTCCCGTAAATCA 59.724 41.667 0.00 0.00 0.00 2.57
2501 3089 5.221087 GGACACACTTTTTCCCGTAAATCAA 60.221 40.000 0.00 0.00 0.00 2.57
2505 3093 7.145323 CACACTTTTTCCCGTAAATCAAAGAT 58.855 34.615 0.00 0.00 0.00 2.40
2506 3094 7.114811 CACACTTTTTCCCGTAAATCAAAGATG 59.885 37.037 0.00 0.00 0.00 2.90
2510 3098 6.885952 TTTCCCGTAAATCAAAGATGAACA 57.114 33.333 0.00 0.00 39.49 3.18
2511 3099 7.461182 TTTCCCGTAAATCAAAGATGAACAT 57.539 32.000 0.00 0.00 39.49 2.71
2512 3100 6.435430 TCCCGTAAATCAAAGATGAACATG 57.565 37.500 0.00 0.00 39.49 3.21
2513 3101 6.176896 TCCCGTAAATCAAAGATGAACATGA 58.823 36.000 0.00 0.00 39.49 3.07
2514 3102 6.657117 TCCCGTAAATCAAAGATGAACATGAA 59.343 34.615 0.00 0.00 39.49 2.57
2517 3105 6.470235 CGTAAATCAAAGATGAACATGAAGGC 59.530 38.462 0.00 0.00 39.49 4.35
2521 3116 3.726557 AAGATGAACATGAAGGCTGGA 57.273 42.857 0.00 0.00 0.00 3.86
2530 3125 2.683933 AAGGCTGGACGTCCGGAT 60.684 61.111 41.26 27.49 45.36 4.18
2531 3126 2.240162 GAAGGCTGGACGTCCGGATT 62.240 60.000 41.26 32.83 45.36 3.01
2541 3136 0.177141 CGTCCGGATTACACCCACAT 59.823 55.000 7.81 0.00 0.00 3.21
2567 3163 2.063015 CTAACACCCTGGCCCACACA 62.063 60.000 0.00 0.00 0.00 3.72
2575 3172 1.002274 TGGCCCACACAAAACCCTT 59.998 52.632 0.00 0.00 0.00 3.95
2583 3180 1.850345 ACACAAAACCCTTCTCCCTCA 59.150 47.619 0.00 0.00 0.00 3.86
2585 3182 1.850345 ACAAAACCCTTCTCCCTCACA 59.150 47.619 0.00 0.00 0.00 3.58
2586 3183 2.447047 ACAAAACCCTTCTCCCTCACAT 59.553 45.455 0.00 0.00 0.00 3.21
2591 3192 1.817099 CTTCTCCCTCACATGCGCC 60.817 63.158 4.18 0.00 0.00 6.53
2596 3197 3.803082 CCTCACATGCGCCCGTTG 61.803 66.667 4.18 0.00 0.00 4.10
2681 3283 1.974343 AGAGCAGACGCGACCTCTT 60.974 57.895 15.93 0.00 45.49 2.85
2701 3307 6.392625 TCTTACTATCTCCGTCATTGAAGG 57.607 41.667 11.94 11.94 32.60 3.46
2733 3340 2.746277 GGACGCACCCGCTTCATT 60.746 61.111 0.00 0.00 38.13 2.57
2756 3369 1.664965 GCTGAACACGCCTTCTCGT 60.665 57.895 0.00 0.00 44.35 4.18
2768 3381 1.200020 CCTTCTCGTGGCATTCAAACC 59.800 52.381 0.00 0.00 0.00 3.27
2773 3386 1.659794 GTGGCATTCAAACCGCTGT 59.340 52.632 0.00 0.00 33.53 4.40
2780 3393 2.902705 TTCAAACCGCTGTAGACTGT 57.097 45.000 0.00 0.00 0.00 3.55
2788 3401 0.037232 GCTGTAGACTGTCCGCCTTT 60.037 55.000 3.76 0.00 0.00 3.11
2802 3417 1.400494 CGCCTTTCTCCATTAAACCCG 59.600 52.381 0.00 0.00 0.00 5.28
2803 3418 1.749063 GCCTTTCTCCATTAAACCCGG 59.251 52.381 0.00 0.00 0.00 5.73
2813 3428 2.280404 TTAAACCCGGGTGTGTGCCA 62.280 55.000 31.05 1.97 0.00 4.92
2820 3435 1.101049 CGGGTGTGTGCCAAGAAACT 61.101 55.000 0.00 0.00 0.00 2.66
2825 3440 3.380320 GGTGTGTGCCAAGAAACTTACTT 59.620 43.478 0.00 0.00 0.00 2.24
2831 3446 2.095718 GCCAAGAAACTTACTTCAGCCG 60.096 50.000 0.00 0.00 0.00 5.52
2869 3489 3.243367 GCCAGCTGACATTAAACACAACA 60.243 43.478 17.39 0.00 0.00 3.33
2870 3490 4.736168 GCCAGCTGACATTAAACACAACAA 60.736 41.667 17.39 0.00 0.00 2.83
2873 3493 6.207928 CAGCTGACATTAAACACAACAATGA 58.792 36.000 8.42 0.00 34.48 2.57
2916 3539 0.604073 TAAACGATGCCAGACACCGA 59.396 50.000 0.00 0.00 0.00 4.69
2970 3593 7.256083 CCATTTCCTCCTTGAACAATTTTCTCT 60.256 37.037 0.00 0.00 0.00 3.10
2980 3603 5.951148 TGAACAATTTTCTCTATGGCATCCA 59.049 36.000 1.65 0.00 38.19 3.41
2981 3604 6.436847 TGAACAATTTTCTCTATGGCATCCAA 59.563 34.615 1.65 0.00 36.95 3.53
2985 3608 3.904800 TTCTCTATGGCATCCAACGAA 57.095 42.857 1.65 0.00 36.95 3.85
2986 3609 3.904800 TCTCTATGGCATCCAACGAAA 57.095 42.857 1.65 0.00 36.95 3.46
2987 3610 3.531538 TCTCTATGGCATCCAACGAAAC 58.468 45.455 1.65 0.00 36.95 2.78
2990 3613 0.322098 ATGGCATCCAACGAAACGGA 60.322 50.000 0.00 0.00 36.95 4.69
3000 3623 5.058490 TCCAACGAAACGGAAGAAGTATTT 58.942 37.500 0.00 0.00 0.00 1.40
3008 3631 2.718563 GGAAGAAGTATTTTCCGGCCA 58.281 47.619 2.24 0.00 34.09 5.36
3060 3683 1.139654 GTGTCATGAGCCAGGCATCTA 59.860 52.381 15.80 0.00 0.00 1.98
3062 3685 2.440627 TGTCATGAGCCAGGCATCTATT 59.559 45.455 15.80 0.00 0.00 1.73
3093 3726 2.196925 ATCGACGCTCTAGGCCAGG 61.197 63.158 5.01 0.00 37.74 4.45
3094 3727 4.577246 CGACGCTCTAGGCCAGGC 62.577 72.222 5.01 1.26 37.74 4.85
3095 3728 4.577246 GACGCTCTAGGCCAGGCG 62.577 72.222 22.90 22.90 44.52 5.52
3160 3793 1.648467 GGAATGGCGAGTTGCTCCAC 61.648 60.000 1.51 0.00 45.43 4.02
3161 3794 0.955428 GAATGGCGAGTTGCTCCACA 60.955 55.000 1.51 0.00 45.43 4.17
3165 3798 2.338620 CGAGTTGCTCCACACCGA 59.661 61.111 0.00 0.00 0.00 4.69
3168 3801 0.946221 GAGTTGCTCCACACCGACAG 60.946 60.000 0.00 0.00 0.00 3.51
3170 3803 3.177194 TTGCTCCACACCGACAGGG 62.177 63.158 0.00 0.00 43.47 4.45
3204 3837 1.531149 GGCACCATGGAACGAATATCG 59.469 52.381 21.47 0.00 46.93 2.92
3221 3854 3.044305 GTGGCTGCTGTGGACGAC 61.044 66.667 0.00 0.00 0.00 4.34
3223 3856 4.664677 GGCTGCTGTGGACGACGT 62.665 66.667 0.00 0.00 0.00 4.34
3237 3870 1.790387 GACGTCGTAGTGTACCGCT 59.210 57.895 0.00 0.00 0.00 5.52
3244 3877 1.108776 GTAGTGTACCGCTCCATCCA 58.891 55.000 0.00 0.00 0.00 3.41
3257 3890 0.748450 CCATCCACCATCAATGTGCC 59.252 55.000 0.00 0.00 0.00 5.01
3258 3891 0.748450 CATCCACCATCAATGTGCCC 59.252 55.000 0.00 0.00 0.00 5.36
3259 3892 0.632835 ATCCACCATCAATGTGCCCT 59.367 50.000 0.00 0.00 0.00 5.19
3260 3893 0.323633 TCCACCATCAATGTGCCCTG 60.324 55.000 0.00 0.00 0.00 4.45
3261 3894 1.514087 CACCATCAATGTGCCCTGC 59.486 57.895 0.00 0.00 0.00 4.85
3262 3895 1.683365 ACCATCAATGTGCCCTGCC 60.683 57.895 0.00 0.00 0.00 4.85
3263 3896 1.683025 CCATCAATGTGCCCTGCCA 60.683 57.895 0.00 0.00 0.00 4.92
3264 3897 1.672854 CCATCAATGTGCCCTGCCAG 61.673 60.000 0.00 0.00 0.00 4.85
3265 3898 2.056223 ATCAATGTGCCCTGCCAGC 61.056 57.895 0.00 0.00 0.00 4.85
3266 3899 2.791613 ATCAATGTGCCCTGCCAGCA 62.792 55.000 0.00 0.00 38.08 4.41
3267 3900 2.678934 AATGTGCCCTGCCAGCAG 60.679 61.111 12.78 12.78 41.87 4.24
3268 3901 3.214190 AATGTGCCCTGCCAGCAGA 62.214 57.895 21.01 0.62 46.30 4.26
3269 3902 3.640257 ATGTGCCCTGCCAGCAGAG 62.640 63.158 21.01 9.13 46.30 3.35
3270 3903 4.025858 GTGCCCTGCCAGCAGAGA 62.026 66.667 21.01 1.41 46.30 3.10
3271 3904 3.251509 TGCCCTGCCAGCAGAGAA 61.252 61.111 21.01 0.00 46.30 2.87
3272 3905 2.034687 GCCCTGCCAGCAGAGAAA 59.965 61.111 21.01 0.00 46.30 2.52
3273 3906 2.045131 GCCCTGCCAGCAGAGAAAG 61.045 63.158 21.01 3.67 46.30 2.62
3274 3907 1.681666 CCCTGCCAGCAGAGAAAGA 59.318 57.895 21.01 0.00 46.30 2.52
3275 3908 0.037303 CCCTGCCAGCAGAGAAAGAA 59.963 55.000 21.01 0.00 46.30 2.52
3276 3909 1.451067 CCTGCCAGCAGAGAAAGAAG 58.549 55.000 21.01 0.00 46.30 2.85
3277 3910 0.803740 CTGCCAGCAGAGAAAGAAGC 59.196 55.000 14.54 0.00 46.30 3.86
3278 3911 0.607489 TGCCAGCAGAGAAAGAAGCC 60.607 55.000 0.00 0.00 0.00 4.35
3279 3912 1.311651 GCCAGCAGAGAAAGAAGCCC 61.312 60.000 0.00 0.00 0.00 5.19
3280 3913 1.023513 CCAGCAGAGAAAGAAGCCCG 61.024 60.000 0.00 0.00 0.00 6.13
3281 3914 0.036952 CAGCAGAGAAAGAAGCCCGA 60.037 55.000 0.00 0.00 0.00 5.14
3282 3915 0.908198 AGCAGAGAAAGAAGCCCGAT 59.092 50.000 0.00 0.00 0.00 4.18
3283 3916 2.111384 AGCAGAGAAAGAAGCCCGATA 58.889 47.619 0.00 0.00 0.00 2.92
3284 3917 2.703007 AGCAGAGAAAGAAGCCCGATAT 59.297 45.455 0.00 0.00 0.00 1.63
3285 3918 2.805099 GCAGAGAAAGAAGCCCGATATG 59.195 50.000 0.00 0.00 0.00 1.78
3286 3919 2.805099 CAGAGAAAGAAGCCCGATATGC 59.195 50.000 0.00 0.00 0.00 3.14
3287 3920 1.795286 GAGAAAGAAGCCCGATATGCG 59.205 52.381 0.00 0.00 40.47 4.73
3297 3930 3.472263 CGATATGCGGACATCGACA 57.528 52.632 12.59 0.00 45.32 4.35
3298 3931 1.766069 CGATATGCGGACATCGACAA 58.234 50.000 12.59 0.00 45.32 3.18
3299 3932 1.716050 CGATATGCGGACATCGACAAG 59.284 52.381 12.59 0.00 45.32 3.16
3300 3933 2.061773 GATATGCGGACATCGACAAGG 58.938 52.381 0.00 0.00 42.43 3.61
3301 3934 0.529773 TATGCGGACATCGACAAGGC 60.530 55.000 0.00 0.00 42.43 4.35
3302 3935 3.554692 GCGGACATCGACAAGGCG 61.555 66.667 0.00 0.00 42.43 5.52
3303 3936 2.885644 CGGACATCGACAAGGCGG 60.886 66.667 0.00 0.00 42.43 6.13
3304 3937 3.195698 GGACATCGACAAGGCGGC 61.196 66.667 0.00 0.00 0.00 6.53
3305 3938 2.434185 GACATCGACAAGGCGGCA 60.434 61.111 13.08 0.00 0.00 5.69
3306 3939 2.434884 ACATCGACAAGGCGGCAG 60.435 61.111 13.08 5.73 0.00 4.85
3307 3940 3.869272 CATCGACAAGGCGGCAGC 61.869 66.667 13.08 0.00 44.18 5.25
3328 3961 4.805231 CACGTACCGCGCCATCCA 62.805 66.667 0.00 0.00 46.11 3.41
3329 3962 4.807039 ACGTACCGCGCCATCCAC 62.807 66.667 0.00 0.00 46.11 4.02
3336 3969 2.824041 GCGCCATCCACCGTCAAT 60.824 61.111 0.00 0.00 0.00 2.57
3337 3970 3.101209 CGCCATCCACCGTCAATG 58.899 61.111 0.00 0.00 0.00 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.508840 GCCGCCCGACTGAATTGG 61.509 66.667 0.00 0.00 0.00 3.16
119 140 4.767255 CCTGTGCCCGCTCTCACC 62.767 72.222 0.00 0.00 32.51 4.02
121 142 3.385384 CTCCTGTGCCCGCTCTCA 61.385 66.667 0.00 0.00 0.00 3.27
123 144 2.925170 AACTCCTGTGCCCGCTCT 60.925 61.111 0.00 0.00 0.00 4.09
145 166 2.454369 TGGTAAGCCACGGGAAAGA 58.546 52.632 0.00 0.00 40.46 2.52
154 175 0.541063 TCCTCGTCAGTGGTAAGCCA 60.541 55.000 0.00 0.00 43.73 4.75
214 235 1.668101 GCTTCCTCGTCCATCTCGGT 61.668 60.000 0.00 0.00 35.57 4.69
381 413 1.959042 CATCTCCTAGCGCCATGTTT 58.041 50.000 2.29 0.00 0.00 2.83
402 434 2.442272 CGGGAGTCCCAGGACGAT 60.442 66.667 28.08 0.00 45.83 3.73
452 484 0.970937 GGTGATGTCCTCCTCCGACA 60.971 60.000 0.00 0.00 44.00 4.35
482 514 2.775890 ACTACTCGTTCTCCGACTCAA 58.224 47.619 0.00 0.00 41.60 3.02
529 561 8.248253 TGCTTCTACGATACAAAATAGAACTGA 58.752 33.333 0.00 0.00 31.87 3.41
535 567 5.986135 AGCCTGCTTCTACGATACAAAATAG 59.014 40.000 0.00 0.00 0.00 1.73
565 597 7.549615 AAAACTTGCTTCTTTCTACTACGTT 57.450 32.000 0.00 0.00 0.00 3.99
624 737 8.688151 GGCTTCTCCAACGATATATAGTTCTAT 58.312 37.037 8.12 0.00 34.01 1.98
654 901 8.708742 TGCTTCTATGATACAAAATGCGTATAC 58.291 33.333 0.00 0.00 29.70 1.47
726 980 1.737236 CAGCCACGCTAAAATGTAGCA 59.263 47.619 3.08 0.00 40.39 3.49
795 1051 2.602933 CGCCGCGCTAAACACTACTATA 60.603 50.000 5.56 0.00 0.00 1.31
847 1105 5.281693 TCATTAAACACTTCATGCTGACG 57.718 39.130 0.00 0.00 0.00 4.35
884 1142 1.160137 GGTTGCACTTGACCTGCTAG 58.840 55.000 0.00 0.00 35.53 3.42
918 1176 9.170734 GGAGGTTAGGTTAATTTCGTTCTAAAT 57.829 33.333 0.00 0.00 0.00 1.40
919 1177 8.156165 TGGAGGTTAGGTTAATTTCGTTCTAAA 58.844 33.333 0.00 0.00 0.00 1.85
920 1178 7.678837 TGGAGGTTAGGTTAATTTCGTTCTAA 58.321 34.615 0.00 0.00 0.00 2.10
922 1180 6.117975 TGGAGGTTAGGTTAATTTCGTTCT 57.882 37.500 0.00 0.00 0.00 3.01
923 1181 6.806388 TTGGAGGTTAGGTTAATTTCGTTC 57.194 37.500 0.00 0.00 0.00 3.95
925 1183 5.182570 GCTTTGGAGGTTAGGTTAATTTCGT 59.817 40.000 0.00 0.00 0.00 3.85
948 1206 5.591643 TCTGATCGTTTGTAAAGTCTTGC 57.408 39.130 0.00 0.00 0.00 4.01
949 1207 9.140286 TCTATTCTGATCGTTTGTAAAGTCTTG 57.860 33.333 0.00 0.00 0.00 3.02
953 1214 7.383687 TGGTCTATTCTGATCGTTTGTAAAGT 58.616 34.615 0.00 0.00 0.00 2.66
957 1218 5.810587 GCTTGGTCTATTCTGATCGTTTGTA 59.189 40.000 0.00 0.00 0.00 2.41
960 1221 3.865745 CGCTTGGTCTATTCTGATCGTTT 59.134 43.478 0.00 0.00 0.00 3.60
966 1227 0.530744 ACGCGCTTGGTCTATTCTGA 59.469 50.000 5.73 0.00 0.00 3.27
968 1229 0.818296 AGACGCGCTTGGTCTATTCT 59.182 50.000 13.79 0.00 42.69 2.40
973 1250 2.182030 GCTAGACGCGCTTGGTCT 59.818 61.111 18.36 18.36 46.05 3.85
980 1257 3.611792 CGCTTGAGCTAGACGCGC 61.612 66.667 5.73 0.00 45.59 6.86
986 1263 3.971150 ACTTATAGTGCGCTTGAGCTAG 58.029 45.455 9.73 0.55 39.32 3.42
987 1264 4.556898 GCTACTTATAGTGCGCTTGAGCTA 60.557 45.833 9.73 3.92 39.32 3.32
1020 1304 1.134075 GTTGTGCATCTCAGCAGCG 59.866 57.895 0.00 0.00 46.69 5.18
1069 1364 4.041567 TGGGCTTGAGACAGTGAAAGATTA 59.958 41.667 0.00 0.00 0.00 1.75
1090 1387 2.740055 GTGCGAGTGCCTCTGTGG 60.740 66.667 0.00 0.00 41.78 4.17
1187 1484 2.048603 GCTTGAAGGCGAAGGGCAT 61.049 57.895 0.00 0.00 46.16 4.40
1447 1744 1.905637 TGTCGCAGTAGTTCTCCTCA 58.094 50.000 0.00 0.00 0.00 3.86
1486 1783 2.989639 CCGTCCCAGAAGATGCCA 59.010 61.111 0.00 0.00 0.00 4.92
1708 2011 1.600916 GGCCTTGCCGAACTTGACT 60.601 57.895 0.00 0.00 39.62 3.41
1846 2271 0.965866 TCACGTAGTCCAGGCTCCTG 60.966 60.000 8.93 8.93 41.61 3.86
1993 2581 2.657237 CCGCTCACCGTCCTCTTT 59.343 61.111 0.00 0.00 34.38 2.52
2037 2625 1.957177 GTCCATCATCTCCTGCGTCTA 59.043 52.381 0.00 0.00 0.00 2.59
2090 2678 2.033602 TCGGTGGAGACGAGCTCA 59.966 61.111 15.40 0.00 45.81 4.26
2179 2767 0.396974 CTAGAGCCTGGAGCCAGTCT 60.397 60.000 14.97 13.62 45.47 3.24
2206 2794 3.717294 AGGCAGCCCGAACGGAAT 61.717 61.111 15.07 0.00 37.50 3.01
2210 2798 3.423154 GAACAGGCAGCCCGAACG 61.423 66.667 8.22 0.00 35.76 3.95
2211 2799 1.244019 AATGAACAGGCAGCCCGAAC 61.244 55.000 8.22 0.00 35.76 3.95
2212 2800 0.539438 AAATGAACAGGCAGCCCGAA 60.539 50.000 8.22 0.00 35.76 4.30
2215 2803 0.968405 TGAAAATGAACAGGCAGCCC 59.032 50.000 8.22 0.00 0.00 5.19
2218 2806 5.163683 CCATACTCTGAAAATGAACAGGCAG 60.164 44.000 0.00 0.00 35.20 4.85
2220 2808 4.943705 TCCATACTCTGAAAATGAACAGGC 59.056 41.667 0.00 0.00 35.20 4.85
2221 2809 6.881065 TCTTCCATACTCTGAAAATGAACAGG 59.119 38.462 0.00 0.00 35.20 4.00
2225 2813 7.689299 TCCTTCTTCCATACTCTGAAAATGAA 58.311 34.615 1.56 0.00 0.00 2.57
2228 2816 7.059156 CCATCCTTCTTCCATACTCTGAAAAT 58.941 38.462 0.00 0.00 0.00 1.82
2231 2819 4.410228 CCCATCCTTCTTCCATACTCTGAA 59.590 45.833 0.00 0.00 0.00 3.02
2233 2821 3.713764 ACCCATCCTTCTTCCATACTCTG 59.286 47.826 0.00 0.00 0.00 3.35
2234 2822 4.014273 ACCCATCCTTCTTCCATACTCT 57.986 45.455 0.00 0.00 0.00 3.24
2235 2823 4.040584 GGTACCCATCCTTCTTCCATACTC 59.959 50.000 0.00 0.00 0.00 2.59
2238 2826 4.295905 AGGTACCCATCCTTCTTCCATA 57.704 45.455 8.74 0.00 30.18 2.74
2240 2828 2.661176 AGGTACCCATCCTTCTTCCA 57.339 50.000 8.74 0.00 30.18 3.53
2242 2830 6.248569 TGAAATAGGTACCCATCCTTCTTC 57.751 41.667 8.74 1.60 36.60 2.87
2246 2834 7.418378 TGAAAATGAAATAGGTACCCATCCTT 58.582 34.615 8.74 2.22 36.60 3.36
2248 2836 6.239036 GCTGAAAATGAAATAGGTACCCATCC 60.239 42.308 8.74 0.00 0.00 3.51
2250 2838 5.598417 GGCTGAAAATGAAATAGGTACCCAT 59.402 40.000 8.74 0.00 0.00 4.00
2251 2839 4.953579 GGCTGAAAATGAAATAGGTACCCA 59.046 41.667 8.74 0.00 0.00 4.51
2252 2840 4.341235 GGGCTGAAAATGAAATAGGTACCC 59.659 45.833 8.74 0.00 0.00 3.69
2253 2841 4.953579 TGGGCTGAAAATGAAATAGGTACC 59.046 41.667 2.73 2.73 0.00 3.34
2260 2848 8.411991 AAAATGAATTGGGCTGAAAATGAAAT 57.588 26.923 0.00 0.00 0.00 2.17
2261 2849 7.820578 AAAATGAATTGGGCTGAAAATGAAA 57.179 28.000 0.00 0.00 0.00 2.69
2294 2882 5.926542 CGACCACTCTTGATAAACTCTGAAA 59.073 40.000 0.00 0.00 0.00 2.69
2295 2883 5.243060 TCGACCACTCTTGATAAACTCTGAA 59.757 40.000 0.00 0.00 0.00 3.02
2296 2884 4.765339 TCGACCACTCTTGATAAACTCTGA 59.235 41.667 0.00 0.00 0.00 3.27
2297 2885 5.060662 TCGACCACTCTTGATAAACTCTG 57.939 43.478 0.00 0.00 0.00 3.35
2298 2886 5.419155 TGATCGACCACTCTTGATAAACTCT 59.581 40.000 0.00 0.00 0.00 3.24
2299 2887 5.651530 TGATCGACCACTCTTGATAAACTC 58.348 41.667 0.00 0.00 0.00 3.01
2300 2888 5.661056 TGATCGACCACTCTTGATAAACT 57.339 39.130 0.00 0.00 0.00 2.66
2301 2889 6.018669 GGAATGATCGACCACTCTTGATAAAC 60.019 42.308 0.00 0.00 0.00 2.01
2302 2890 6.049149 GGAATGATCGACCACTCTTGATAAA 58.951 40.000 0.00 0.00 0.00 1.40
2303 2891 5.601662 GGAATGATCGACCACTCTTGATAA 58.398 41.667 0.00 0.00 0.00 1.75
2304 2892 4.261614 CGGAATGATCGACCACTCTTGATA 60.262 45.833 0.00 0.00 0.00 2.15
2305 2893 3.491619 CGGAATGATCGACCACTCTTGAT 60.492 47.826 0.00 0.00 0.00 2.57
2306 2894 2.159240 CGGAATGATCGACCACTCTTGA 60.159 50.000 0.00 0.00 0.00 3.02
2307 2895 2.196749 CGGAATGATCGACCACTCTTG 58.803 52.381 0.00 0.00 0.00 3.02
2308 2896 1.825474 ACGGAATGATCGACCACTCTT 59.175 47.619 0.00 0.00 0.00 2.85
2309 2897 1.405821 GACGGAATGATCGACCACTCT 59.594 52.381 0.00 0.00 0.00 3.24
2310 2898 1.841450 GACGGAATGATCGACCACTC 58.159 55.000 0.00 0.00 0.00 3.51
2311 2899 0.100682 CGACGGAATGATCGACCACT 59.899 55.000 0.00 0.00 40.86 4.00
2312 2900 0.179145 ACGACGGAATGATCGACCAC 60.179 55.000 0.00 0.00 40.86 4.16
2313 2901 0.099968 GACGACGGAATGATCGACCA 59.900 55.000 0.00 0.00 40.86 4.02
2314 2902 0.099968 TGACGACGGAATGATCGACC 59.900 55.000 0.00 0.00 40.86 4.79
2315 2903 1.781429 CATGACGACGGAATGATCGAC 59.219 52.381 0.00 0.00 40.86 4.20
2316 2904 1.864029 GCATGACGACGGAATGATCGA 60.864 52.381 14.13 0.00 40.86 3.59
2317 2905 0.504384 GCATGACGACGGAATGATCG 59.496 55.000 14.13 0.00 43.97 3.69
2318 2906 1.570813 TGCATGACGACGGAATGATC 58.429 50.000 14.13 0.00 0.00 2.92
2319 2907 2.022764 TTGCATGACGACGGAATGAT 57.977 45.000 14.13 0.00 0.00 2.45
2320 2908 2.022764 ATTGCATGACGACGGAATGA 57.977 45.000 14.13 0.00 0.00 2.57
2321 2909 2.607180 TGTATTGCATGACGACGGAATG 59.393 45.455 0.00 3.71 0.00 2.67
2322 2910 2.899976 TGTATTGCATGACGACGGAAT 58.100 42.857 0.00 0.00 0.00 3.01
2323 2911 2.371910 TGTATTGCATGACGACGGAA 57.628 45.000 0.00 0.00 0.00 4.30
2324 2912 2.267426 CTTGTATTGCATGACGACGGA 58.733 47.619 0.00 0.00 0.00 4.69
2325 2913 1.267532 GCTTGTATTGCATGACGACGG 60.268 52.381 0.00 0.00 0.00 4.79
2326 2914 1.589731 CGCTTGTATTGCATGACGACG 60.590 52.381 0.00 0.00 0.00 5.12
2327 2915 1.267532 CCGCTTGTATTGCATGACGAC 60.268 52.381 0.00 0.00 0.00 4.34
2328 2916 1.006086 CCGCTTGTATTGCATGACGA 58.994 50.000 0.00 0.00 0.00 4.20
2329 2917 1.006086 TCCGCTTGTATTGCATGACG 58.994 50.000 0.00 0.00 0.00 4.35
2330 2918 1.737236 TGTCCGCTTGTATTGCATGAC 59.263 47.619 0.00 0.00 34.51 3.06
2331 2919 2.106477 TGTCCGCTTGTATTGCATGA 57.894 45.000 0.00 0.00 0.00 3.07
2332 2920 2.478370 CCTTGTCCGCTTGTATTGCATG 60.478 50.000 0.00 0.00 0.00 4.06
2333 2921 1.745087 CCTTGTCCGCTTGTATTGCAT 59.255 47.619 0.00 0.00 0.00 3.96
2334 2922 1.164411 CCTTGTCCGCTTGTATTGCA 58.836 50.000 0.00 0.00 0.00 4.08
2335 2923 0.179163 GCCTTGTCCGCTTGTATTGC 60.179 55.000 0.00 0.00 0.00 3.56
2336 2924 0.096976 CGCCTTGTCCGCTTGTATTG 59.903 55.000 0.00 0.00 0.00 1.90
2337 2925 0.321298 ACGCCTTGTCCGCTTGTATT 60.321 50.000 0.00 0.00 0.00 1.89
2338 2926 0.321298 AACGCCTTGTCCGCTTGTAT 60.321 50.000 0.00 0.00 0.00 2.29
2339 2927 1.070105 AACGCCTTGTCCGCTTGTA 59.930 52.632 0.00 0.00 0.00 2.41
2340 2928 2.203153 AACGCCTTGTCCGCTTGT 60.203 55.556 0.00 0.00 0.00 3.16
2341 2929 2.058829 AACAACGCCTTGTCCGCTTG 62.059 55.000 1.42 0.00 39.88 4.01
2342 2930 0.533308 TAACAACGCCTTGTCCGCTT 60.533 50.000 1.42 0.00 39.88 4.68
2343 2931 0.533308 TTAACAACGCCTTGTCCGCT 60.533 50.000 1.42 0.00 39.88 5.52
2344 2932 0.519961 ATTAACAACGCCTTGTCCGC 59.480 50.000 1.42 0.00 39.88 5.54
2345 2933 2.981400 AATTAACAACGCCTTGTCCG 57.019 45.000 1.42 0.00 39.88 4.79
2346 2934 4.806775 ACAAAAATTAACAACGCCTTGTCC 59.193 37.500 1.42 0.00 39.88 4.02
2347 2935 5.723237 CACAAAAATTAACAACGCCTTGTC 58.277 37.500 1.42 0.00 39.88 3.18
2348 2936 4.033472 GCACAAAAATTAACAACGCCTTGT 59.967 37.500 0.00 0.00 42.81 3.16
2349 2937 4.033358 TGCACAAAAATTAACAACGCCTTG 59.967 37.500 0.00 0.00 0.00 3.61
2350 2938 4.184629 TGCACAAAAATTAACAACGCCTT 58.815 34.783 0.00 0.00 0.00 4.35
2351 2939 3.786635 TGCACAAAAATTAACAACGCCT 58.213 36.364 0.00 0.00 0.00 5.52
2352 2940 4.453339 CATGCACAAAAATTAACAACGCC 58.547 39.130 0.00 0.00 0.00 5.68
2353 2941 3.899531 GCATGCACAAAAATTAACAACGC 59.100 39.130 14.21 0.00 0.00 4.84
2354 2942 4.133128 CGCATGCACAAAAATTAACAACG 58.867 39.130 19.57 0.00 0.00 4.10
2355 2943 3.899531 GCGCATGCACAAAAATTAACAAC 59.100 39.130 19.57 0.00 42.15 3.32
2356 2944 4.125912 GCGCATGCACAAAAATTAACAA 57.874 36.364 19.57 0.00 42.15 2.83
2357 2945 3.784883 GCGCATGCACAAAAATTAACA 57.215 38.095 19.57 0.00 42.15 2.41
2376 2964 0.447801 CTAACTTCACGCCCACATGC 59.552 55.000 0.00 0.00 0.00 4.06
2377 2965 1.086696 CCTAACTTCACGCCCACATG 58.913 55.000 0.00 0.00 0.00 3.21
2378 2966 0.676782 GCCTAACTTCACGCCCACAT 60.677 55.000 0.00 0.00 0.00 3.21
2379 2967 1.302192 GCCTAACTTCACGCCCACA 60.302 57.895 0.00 0.00 0.00 4.17
2380 2968 0.676782 ATGCCTAACTTCACGCCCAC 60.677 55.000 0.00 0.00 0.00 4.61
2381 2969 0.392461 GATGCCTAACTTCACGCCCA 60.392 55.000 0.00 0.00 0.00 5.36
2382 2970 0.107654 AGATGCCTAACTTCACGCCC 60.108 55.000 0.00 0.00 0.00 6.13
2383 2971 1.291132 GAGATGCCTAACTTCACGCC 58.709 55.000 0.00 0.00 0.00 5.68
2384 2972 0.924090 CGAGATGCCTAACTTCACGC 59.076 55.000 0.00 0.00 31.82 5.34
2385 2973 2.561733 TCGAGATGCCTAACTTCACG 57.438 50.000 0.00 0.00 37.70 4.35
2386 2974 2.599082 CGTTCGAGATGCCTAACTTCAC 59.401 50.000 0.00 0.00 0.00 3.18
2387 2975 2.876091 CGTTCGAGATGCCTAACTTCA 58.124 47.619 0.00 0.00 0.00 3.02
2388 2976 1.588861 GCGTTCGAGATGCCTAACTTC 59.411 52.381 0.00 0.00 34.03 3.01
2389 2977 1.641577 GCGTTCGAGATGCCTAACTT 58.358 50.000 0.00 0.00 34.03 2.66
2390 2978 3.347411 GCGTTCGAGATGCCTAACT 57.653 52.632 0.00 0.00 34.03 2.24
2396 2984 3.255379 GTCGGGCGTTCGAGATGC 61.255 66.667 2.72 3.97 40.01 3.91
2397 2985 2.582498 GGTCGGGCGTTCGAGATG 60.582 66.667 2.72 0.00 40.01 2.90
2398 2986 3.834799 GGGTCGGGCGTTCGAGAT 61.835 66.667 2.72 0.00 40.01 2.75
2400 2988 4.493747 GAGGGTCGGGCGTTCGAG 62.494 72.222 2.72 0.00 40.01 4.04
2403 2991 4.060038 TTCGAGGGTCGGGCGTTC 62.060 66.667 0.00 0.00 40.88 3.95
2404 2992 4.368543 GTTCGAGGGTCGGGCGTT 62.369 66.667 0.00 0.00 40.88 4.84
2406 2994 4.796231 CTGTTCGAGGGTCGGGCG 62.796 72.222 0.00 0.00 40.88 6.13
2408 2996 4.452733 GGCTGTTCGAGGGTCGGG 62.453 72.222 0.00 0.00 40.88 5.14
2409 2997 4.452733 GGGCTGTTCGAGGGTCGG 62.453 72.222 0.00 0.00 40.88 4.79
2410 2998 4.796231 CGGGCTGTTCGAGGGTCG 62.796 72.222 0.00 0.00 42.10 4.79
2411 2999 3.692406 ACGGGCTGTTCGAGGGTC 61.692 66.667 0.00 0.00 0.00 4.46
2412 3000 4.003788 CACGGGCTGTTCGAGGGT 62.004 66.667 0.00 0.00 0.00 4.34
2426 3014 4.147322 GAATGACACCCGCGCACG 62.147 66.667 8.75 0.00 39.67 5.34
2427 3015 2.612567 TTGAATGACACCCGCGCAC 61.613 57.895 8.75 0.00 0.00 5.34
2428 3016 2.281139 TTGAATGACACCCGCGCA 60.281 55.556 8.75 0.00 0.00 6.09
2429 3017 2.175811 GTTGAATGACACCCGCGC 59.824 61.111 0.00 0.00 0.00 6.86
2430 3018 2.474266 CGTTGAATGACACCCGCG 59.526 61.111 0.00 0.00 0.00 6.46
2431 3019 2.175811 GCGTTGAATGACACCCGC 59.824 61.111 0.00 0.00 40.18 6.13
2432 3020 2.474266 CGCGTTGAATGACACCCG 59.526 61.111 0.00 0.00 0.00 5.28
2433 3021 1.908066 GACCGCGTTGAATGACACCC 61.908 60.000 4.92 0.00 0.00 4.61
2434 3022 1.495951 GACCGCGTTGAATGACACC 59.504 57.895 4.92 0.00 0.00 4.16
2438 3026 2.032634 GCAGGACCGCGTTGAATGA 61.033 57.895 4.92 0.00 0.00 2.57
2442 3030 2.031919 AATGCAGGACCGCGTTGA 59.968 55.556 4.92 0.00 39.62 3.18
2448 3036 2.028420 TGAGAATCAATGCAGGACCG 57.972 50.000 0.00 0.00 45.97 4.79
2461 3049 1.754803 TGTCCGAACCGCTATGAGAAT 59.245 47.619 0.00 0.00 0.00 2.40
2463 3051 0.454600 GTGTCCGAACCGCTATGAGA 59.545 55.000 0.00 0.00 0.00 3.27
2465 3053 0.108992 GTGTGTCCGAACCGCTATGA 60.109 55.000 0.00 0.00 0.00 2.15
2469 3057 0.463116 AAAAGTGTGTCCGAACCGCT 60.463 50.000 0.00 0.00 0.00 5.52
2473 3061 1.003223 CGGGAAAAAGTGTGTCCGAAC 60.003 52.381 0.00 0.00 39.83 3.95
2475 3063 0.178533 ACGGGAAAAAGTGTGTCCGA 59.821 50.000 6.57 0.00 40.53 4.55
2477 3065 4.276431 TGATTTACGGGAAAAAGTGTGTCC 59.724 41.667 0.00 0.00 0.00 4.02
2481 3069 6.702716 TCTTTGATTTACGGGAAAAAGTGT 57.297 33.333 0.00 0.00 0.00 3.55
2484 3072 7.865385 TGTTCATCTTTGATTTACGGGAAAAAG 59.135 33.333 0.00 0.00 0.00 2.27
2488 3076 6.657117 TCATGTTCATCTTTGATTTACGGGAA 59.343 34.615 0.00 0.00 0.00 3.97
2494 3082 7.363181 CCAGCCTTCATGTTCATCTTTGATTTA 60.363 37.037 0.00 0.00 0.00 1.40
2498 3086 3.760151 CCAGCCTTCATGTTCATCTTTGA 59.240 43.478 0.00 0.00 0.00 2.69
2500 3088 3.760684 GTCCAGCCTTCATGTTCATCTTT 59.239 43.478 0.00 0.00 0.00 2.52
2501 3089 3.350833 GTCCAGCCTTCATGTTCATCTT 58.649 45.455 0.00 0.00 0.00 2.40
2505 3093 0.396435 ACGTCCAGCCTTCATGTTCA 59.604 50.000 0.00 0.00 0.00 3.18
2506 3094 1.079503 GACGTCCAGCCTTCATGTTC 58.920 55.000 3.51 0.00 0.00 3.18
2510 3098 2.579201 CGGACGTCCAGCCTTCAT 59.421 61.111 32.80 0.00 35.14 2.57
2511 3099 3.691342 CCGGACGTCCAGCCTTCA 61.691 66.667 32.80 0.00 35.14 3.02
2512 3100 2.240162 AATCCGGACGTCCAGCCTTC 62.240 60.000 32.80 5.52 35.14 3.46
2513 3101 0.974010 TAATCCGGACGTCCAGCCTT 60.974 55.000 32.80 21.02 35.14 4.35
2514 3102 1.380785 TAATCCGGACGTCCAGCCT 60.381 57.895 32.80 16.94 35.14 4.58
2517 3105 0.179119 GGTGTAATCCGGACGTCCAG 60.179 60.000 32.80 23.19 35.14 3.86
2521 3116 1.186917 TGTGGGTGTAATCCGGACGT 61.187 55.000 6.12 0.00 0.00 4.34
2530 3125 4.348461 TGTTAGAAGTGGATGTGGGTGTAA 59.652 41.667 0.00 0.00 0.00 2.41
2531 3126 3.904965 TGTTAGAAGTGGATGTGGGTGTA 59.095 43.478 0.00 0.00 0.00 2.90
2541 3136 0.690762 GCCAGGGTGTTAGAAGTGGA 59.309 55.000 0.00 0.00 0.00 4.02
2567 3163 2.819348 GCATGTGAGGGAGAAGGGTTTT 60.819 50.000 0.00 0.00 0.00 2.43
2575 3172 3.785859 GGGCGCATGTGAGGGAGA 61.786 66.667 10.83 0.00 0.00 3.71
2603 3204 3.574074 AATGAGGGCAGCTGGCGTT 62.574 57.895 32.33 23.50 46.16 4.84
2604 3205 3.984193 GAATGAGGGCAGCTGGCGT 62.984 63.158 32.36 32.36 46.16 5.68
2668 3270 3.132925 GAGATAGTAAGAGGTCGCGTCT 58.867 50.000 5.77 5.06 0.00 4.18
2681 3283 3.895656 CCCCTTCAATGACGGAGATAGTA 59.104 47.826 7.40 0.00 0.00 1.82
2729 3336 1.375396 CGTGTTCAGCCGGGAATGA 60.375 57.895 2.18 0.00 0.00 2.57
2751 3364 1.573829 GCGGTTTGAATGCCACGAGA 61.574 55.000 0.00 0.00 0.00 4.04
2756 3369 1.164411 CTACAGCGGTTTGAATGCCA 58.836 50.000 0.00 0.00 0.00 4.92
2757 3370 1.130561 GTCTACAGCGGTTTGAATGCC 59.869 52.381 0.00 0.00 0.00 4.40
2768 3381 2.202623 GGCGGACAGTCTACAGCG 60.203 66.667 0.00 0.00 0.00 5.18
2773 3386 1.183549 GGAGAAAGGCGGACAGTCTA 58.816 55.000 0.00 0.00 32.25 2.59
2780 3393 2.619590 GGGTTTAATGGAGAAAGGCGGA 60.620 50.000 0.00 0.00 0.00 5.54
2788 3401 1.003812 CACACCCGGGTTTAATGGAGA 59.996 52.381 27.83 0.00 0.00 3.71
2802 3417 1.111277 AAGTTTCTTGGCACACACCC 58.889 50.000 0.00 0.00 39.29 4.61
2803 3418 2.949644 AGTAAGTTTCTTGGCACACACC 59.050 45.455 0.00 0.00 39.29 4.16
2813 3428 2.548480 GTGCGGCTGAAGTAAGTTTCTT 59.452 45.455 0.00 0.00 0.00 2.52
2820 3435 1.373748 GGACGTGCGGCTGAAGTAA 60.374 57.895 0.00 0.00 0.00 2.24
2850 3470 6.389830 TCATTGTTGTGTTTAATGTCAGCT 57.610 33.333 0.00 0.00 34.35 4.24
2853 3473 6.423302 GCCAATCATTGTTGTGTTTAATGTCA 59.577 34.615 0.00 0.00 34.35 3.58
2869 3489 2.173669 CGGACGCGAGCCAATCATT 61.174 57.895 15.93 0.00 0.00 2.57
2870 3490 2.586079 CGGACGCGAGCCAATCAT 60.586 61.111 15.93 0.00 0.00 2.45
2916 3539 2.186826 GTGTGGTGCGGTTCTTGCT 61.187 57.895 0.00 0.00 0.00 3.91
2970 3593 1.066071 TCCGTTTCGTTGGATGCCATA 60.066 47.619 0.00 0.00 31.53 2.74
2980 3603 5.993891 GGAAAATACTTCTTCCGTTTCGTT 58.006 37.500 0.00 0.00 32.23 3.85
2981 3604 5.602458 GGAAAATACTTCTTCCGTTTCGT 57.398 39.130 0.00 0.00 32.23 3.85
2990 3613 5.538118 CTTTTTGGCCGGAAAATACTTCTT 58.462 37.500 5.05 0.00 0.00 2.52
3007 3630 1.659794 CCACCCAGACGGCTTTTTG 59.340 57.895 0.00 0.00 33.26 2.44
3008 3631 2.200337 GCCACCCAGACGGCTTTTT 61.200 57.895 0.00 0.00 45.29 1.94
3029 3652 0.036105 TCATGACACGCAGGCTTGAT 60.036 50.000 0.00 0.00 0.00 2.57
3032 3655 2.037136 GCTCATGACACGCAGGCTT 61.037 57.895 0.00 0.00 0.00 4.35
3037 3660 2.046988 CCTGGCTCATGACACGCA 60.047 61.111 7.62 0.00 0.00 5.24
3040 3663 0.107312 AGATGCCTGGCTCATGACAC 60.107 55.000 21.03 2.57 0.00 3.67
3041 3664 1.499368 TAGATGCCTGGCTCATGACA 58.501 50.000 21.03 0.00 0.00 3.58
3060 3683 2.711542 GTCGATGGAGGTGGAACAAAT 58.288 47.619 0.00 0.00 44.16 2.32
3062 3685 0.037697 CGTCGATGGAGGTGGAACAA 60.038 55.000 0.00 0.00 44.16 2.83
3094 3727 4.749310 AGCTTCAGCCTCCACGCG 62.749 66.667 3.53 3.53 43.38 6.01
3095 3728 2.817396 GAGCTTCAGCCTCCACGC 60.817 66.667 0.00 0.00 43.38 5.34
3098 3731 1.681666 CTTGGAGCTTCAGCCTCCA 59.318 57.895 13.07 13.07 42.39 3.86
3138 3771 0.391661 GAGCAACTCGCCATTCCTCA 60.392 55.000 0.00 0.00 44.04 3.86
3144 3777 1.672356 GTGTGGAGCAACTCGCCAT 60.672 57.895 0.00 0.00 46.38 4.40
3182 3815 0.106918 TATTCGTTCCATGGTGCCCC 60.107 55.000 12.58 0.00 0.00 5.80
3184 3817 1.531149 CGATATTCGTTCCATGGTGCC 59.469 52.381 12.58 0.00 34.72 5.01
3185 3818 2.949714 CGATATTCGTTCCATGGTGC 57.050 50.000 12.58 4.94 34.72 5.01
3196 3829 0.578683 CACAGCAGCCACGATATTCG 59.421 55.000 0.00 0.00 46.93 3.34
3197 3830 0.940126 CCACAGCAGCCACGATATTC 59.060 55.000 0.00 0.00 0.00 1.75
3198 3831 0.541392 TCCACAGCAGCCACGATATT 59.459 50.000 0.00 0.00 0.00 1.28
3199 3832 0.179073 GTCCACAGCAGCCACGATAT 60.179 55.000 0.00 0.00 0.00 1.63
3200 3833 1.218047 GTCCACAGCAGCCACGATA 59.782 57.895 0.00 0.00 0.00 2.92
3204 3837 3.044305 GTCGTCCACAGCAGCCAC 61.044 66.667 0.00 0.00 0.00 5.01
3207 3840 3.106407 GACGTCGTCCACAGCAGC 61.106 66.667 14.60 0.00 0.00 5.25
3221 3854 1.061570 GGAGCGGTACACTACGACG 59.938 63.158 0.00 0.00 0.00 5.12
3223 3856 1.019673 GATGGAGCGGTACACTACGA 58.980 55.000 0.00 0.00 0.00 3.43
3227 3860 1.614241 GGTGGATGGAGCGGTACACT 61.614 60.000 0.00 0.00 0.00 3.55
3228 3861 1.153429 GGTGGATGGAGCGGTACAC 60.153 63.158 0.00 0.00 0.00 2.90
3229 3862 0.980754 ATGGTGGATGGAGCGGTACA 60.981 55.000 0.00 0.00 0.00 2.90
3230 3863 0.249911 GATGGTGGATGGAGCGGTAC 60.250 60.000 0.00 0.00 0.00 3.34
3232 3865 1.561769 TTGATGGTGGATGGAGCGGT 61.562 55.000 0.00 0.00 0.00 5.68
3237 3870 1.685803 GGCACATTGATGGTGGATGGA 60.686 52.381 0.00 0.00 36.76 3.41
3244 3877 1.683365 GGCAGGGCACATTGATGGT 60.683 57.895 0.00 0.00 0.00 3.55
3257 3890 1.451067 CTTCTTTCTCTGCTGGCAGG 58.549 55.000 17.64 12.25 43.75 4.85
3258 3891 0.803740 GCTTCTTTCTCTGCTGGCAG 59.196 55.000 10.94 10.94 44.86 4.85
3259 3892 0.607489 GGCTTCTTTCTCTGCTGGCA 60.607 55.000 0.00 0.00 0.00 4.92
3260 3893 1.311651 GGGCTTCTTTCTCTGCTGGC 61.312 60.000 0.00 0.00 0.00 4.85
3261 3894 1.023513 CGGGCTTCTTTCTCTGCTGG 61.024 60.000 0.00 0.00 0.00 4.85
3262 3895 0.036952 TCGGGCTTCTTTCTCTGCTG 60.037 55.000 0.00 0.00 0.00 4.41
3263 3896 0.908198 ATCGGGCTTCTTTCTCTGCT 59.092 50.000 0.00 0.00 0.00 4.24
3264 3897 2.604046 TATCGGGCTTCTTTCTCTGC 57.396 50.000 0.00 0.00 0.00 4.26
3265 3898 2.805099 GCATATCGGGCTTCTTTCTCTG 59.195 50.000 0.00 0.00 0.00 3.35
3266 3899 2.546795 CGCATATCGGGCTTCTTTCTCT 60.547 50.000 0.00 0.00 33.78 3.10
3267 3900 1.795286 CGCATATCGGGCTTCTTTCTC 59.205 52.381 0.00 0.00 33.78 2.87
3268 3901 1.871080 CGCATATCGGGCTTCTTTCT 58.129 50.000 0.00 0.00 33.78 2.52
3279 3912 1.716050 CTTGTCGATGTCCGCATATCG 59.284 52.381 0.00 0.00 45.49 2.92
3280 3913 2.061773 CCTTGTCGATGTCCGCATATC 58.938 52.381 0.00 0.00 38.37 1.63
3281 3914 1.873903 GCCTTGTCGATGTCCGCATAT 60.874 52.381 0.00 0.00 38.37 1.78
3282 3915 0.529773 GCCTTGTCGATGTCCGCATA 60.530 55.000 0.00 0.00 38.37 3.14
3283 3916 1.815421 GCCTTGTCGATGTCCGCAT 60.815 57.895 0.00 0.00 38.37 4.73
3284 3917 2.434185 GCCTTGTCGATGTCCGCA 60.434 61.111 0.00 0.00 38.37 5.69
3285 3918 3.554692 CGCCTTGTCGATGTCCGC 61.555 66.667 0.00 0.00 38.37 5.54
3286 3919 2.885644 CCGCCTTGTCGATGTCCG 60.886 66.667 0.00 0.00 40.25 4.79
3287 3920 3.195698 GCCGCCTTGTCGATGTCC 61.196 66.667 0.00 0.00 0.00 4.02
3288 3921 2.434185 TGCCGCCTTGTCGATGTC 60.434 61.111 0.00 0.00 0.00 3.06
3289 3922 2.434884 CTGCCGCCTTGTCGATGT 60.435 61.111 0.00 0.00 0.00 3.06
3290 3923 3.869272 GCTGCCGCCTTGTCGATG 61.869 66.667 0.00 0.00 0.00 3.84
3319 3952 2.824041 ATTGACGGTGGATGGCGC 60.824 61.111 0.00 0.00 0.00 6.53
3320 3953 3.101209 CATTGACGGTGGATGGCG 58.899 61.111 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.