Multiple sequence alignment - TraesCS2B01G078200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G078200 chr2B 100.000 4043 0 0 1 4043 43612887 43616929 0.000000e+00 7467.0
1 TraesCS2B01G078200 chr2B 87.857 1400 132 21 1673 3059 43631126 43629752 0.000000e+00 1609.0
2 TraesCS2B01G078200 chr2B 88.938 678 66 8 1941 2613 165112200 165111527 0.000000e+00 828.0
3 TraesCS2B01G078200 chr2B 90.690 290 27 0 2759 3048 165111378 165111089 1.760000e-103 387.0
4 TraesCS2B01G078200 chr2B 78.718 390 60 19 809 1183 165113322 165112941 5.220000e-59 239.0
5 TraesCS2B01G078200 chr2B 88.166 169 18 2 1011 1178 43631808 43631641 2.460000e-47 200.0
6 TraesCS2B01G078200 chr2B 98.305 59 1 0 1627 1685 43614454 43614512 1.990000e-18 104.0
7 TraesCS2B01G078200 chr2B 98.305 59 1 0 1568 1626 43614513 43614571 1.990000e-18 104.0
8 TraesCS2B01G078200 chr2A 90.476 1995 105 30 1627 3581 29870983 29872932 0.000000e+00 2553.0
9 TraesCS2B01G078200 chr2A 89.515 1402 119 19 1673 3056 29878651 29877260 0.000000e+00 1749.0
10 TraesCS2B01G078200 chr2A 87.638 817 65 17 355 1137 29869380 29870194 0.000000e+00 917.0
11 TraesCS2B01G078200 chr2A 87.592 677 76 7 1941 2613 116001143 116000471 0.000000e+00 778.0
12 TraesCS2B01G078200 chr2A 89.931 437 41 3 3605 4040 29872996 29873430 9.810000e-156 560.0
13 TraesCS2B01G078200 chr2A 90.196 306 30 0 2759 3064 116000322 116000017 2.260000e-107 399.0
14 TraesCS2B01G078200 chr2A 80.037 541 67 20 1830 2363 29836181 29836687 2.970000e-96 363.0
15 TraesCS2B01G078200 chr2A 78.663 389 62 17 809 1183 116002346 116001965 5.220000e-59 239.0
16 TraesCS2B01G078200 chr2A 77.111 450 69 21 1011 1435 29879310 29878870 3.140000e-56 230.0
17 TraesCS2B01G078200 chr2A 81.569 255 34 11 1293 1538 29870679 29870929 8.860000e-47 198.0
18 TraesCS2B01G078200 chr2D 87.759 1740 152 29 1699 3420 27758218 27759914 0.000000e+00 1977.0
19 TraesCS2B01G078200 chr2D 91.431 1132 72 15 1936 3059 27763019 27761905 0.000000e+00 1530.0
20 TraesCS2B01G078200 chr2D 87.097 713 74 12 1906 2613 114548537 114547838 0.000000e+00 791.0
21 TraesCS2B01G078200 chr2D 96.341 328 12 0 801 1128 27756945 27757272 1.280000e-149 540.0
22 TraesCS2B01G078200 chr2D 90.850 306 28 0 2759 3064 114547689 114547384 1.050000e-110 411.0
23 TraesCS2B01G078200 chr2D 90.173 173 14 2 1011 1183 27764131 27763962 5.260000e-54 222.0
24 TraesCS2B01G078200 chr2D 77.919 394 59 22 809 1183 114549628 114549244 1.890000e-53 220.0
25 TraesCS2B01G078200 chr2D 88.889 45 4 1 3877 3921 27761146 27761189 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G078200 chr2B 43612887 43616929 4042 False 2558.333333 7467 98.870000 1 4043 3 chr2B.!!$F1 4042
1 TraesCS2B01G078200 chr2B 43629752 43631808 2056 True 904.500000 1609 88.011500 1011 3059 2 chr2B.!!$R1 2048
2 TraesCS2B01G078200 chr2B 165111089 165113322 2233 True 484.666667 828 86.115333 809 3048 3 chr2B.!!$R2 2239
3 TraesCS2B01G078200 chr2A 29869380 29873430 4050 False 1057.000000 2553 87.403500 355 4040 4 chr2A.!!$F2 3685
4 TraesCS2B01G078200 chr2A 29877260 29879310 2050 True 989.500000 1749 83.313000 1011 3056 2 chr2A.!!$R1 2045
5 TraesCS2B01G078200 chr2A 116000017 116002346 2329 True 472.000000 778 85.483667 809 3064 3 chr2A.!!$R2 2255
6 TraesCS2B01G078200 chr2A 29836181 29836687 506 False 363.000000 363 80.037000 1830 2363 1 chr2A.!!$F1 533
7 TraesCS2B01G078200 chr2D 27761905 27764131 2226 True 876.000000 1530 90.802000 1011 3059 2 chr2D.!!$R1 2048
8 TraesCS2B01G078200 chr2D 27756945 27761189 4244 False 857.233333 1977 90.996333 801 3921 3 chr2D.!!$F1 3120
9 TraesCS2B01G078200 chr2D 114547384 114549628 2244 True 474.000000 791 85.288667 809 3064 3 chr2D.!!$R2 2255

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
758 768 0.249573 GGCTTTGCCCGCGTAGTATA 60.250 55.0 4.92 0.00 44.06 1.47 F
1197 1594 0.180642 TCCACTCTAGATCCGCGTCT 59.819 55.0 4.92 4.70 0.00 4.18 F
1572 2282 0.613777 CTACAACCCTCCCACACTCC 59.386 60.0 0.00 0.00 0.00 3.85 F
1632 2402 0.910338 ATGCTCAGTGATGCACTCCT 59.090 50.0 16.24 2.29 43.43 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1613 2383 0.910338 AGGAGTGCATCACTGAGCAT 59.090 50.0 3.98 0.0 45.44 3.79 R
2820 3817 0.745845 CAAGACGCTGGATCTTGGGG 60.746 60.0 6.81 0.0 46.21 4.96 R
3024 4021 1.908340 CTTAGGCAGAGGCAGCAGGT 61.908 60.0 0.00 0.0 43.71 4.00 R
3584 5076 0.110486 AGGACCAACGCCACAAGAAT 59.890 50.0 0.00 0.0 0.00 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
221 222 7.778470 TTGTGGTTGTTAACATTTGAATTCC 57.222 32.000 9.56 3.55 0.00 3.01
222 223 7.118496 TGTGGTTGTTAACATTTGAATTCCT 57.882 32.000 9.56 0.00 0.00 3.36
223 224 6.983307 TGTGGTTGTTAACATTTGAATTCCTG 59.017 34.615 9.56 0.82 0.00 3.86
224 225 7.147828 TGTGGTTGTTAACATTTGAATTCCTGA 60.148 33.333 9.56 0.00 0.00 3.86
225 226 7.708752 GTGGTTGTTAACATTTGAATTCCTGAA 59.291 33.333 9.56 0.00 0.00 3.02
226 227 8.428063 TGGTTGTTAACATTTGAATTCCTGAAT 58.572 29.630 9.56 0.00 0.00 2.57
227 228 9.921637 GGTTGTTAACATTTGAATTCCTGAATA 57.078 29.630 9.56 0.00 0.00 1.75
300 301 8.986477 ATTAAGAACATCTTTTGAAATTCCGG 57.014 30.769 0.00 0.00 37.89 5.14
301 302 6.405278 AAGAACATCTTTTGAAATTCCGGT 57.595 33.333 0.00 0.00 31.57 5.28
302 303 6.013842 AGAACATCTTTTGAAATTCCGGTC 57.986 37.500 0.00 0.00 30.86 4.79
303 304 5.534654 AGAACATCTTTTGAAATTCCGGTCA 59.465 36.000 0.00 0.00 30.86 4.02
304 305 5.982890 ACATCTTTTGAAATTCCGGTCAT 57.017 34.783 0.00 0.00 0.00 3.06
305 306 6.345096 ACATCTTTTGAAATTCCGGTCATT 57.655 33.333 0.00 0.00 0.00 2.57
306 307 6.758254 ACATCTTTTGAAATTCCGGTCATTT 58.242 32.000 12.43 12.43 0.00 2.32
307 308 7.216494 ACATCTTTTGAAATTCCGGTCATTTT 58.784 30.769 13.43 5.03 0.00 1.82
308 309 7.714813 ACATCTTTTGAAATTCCGGTCATTTTT 59.285 29.630 13.43 3.53 0.00 1.94
406 407 2.771089 CTATGCGTCCACATATGGCTT 58.229 47.619 7.80 1.56 46.80 4.35
410 411 0.747644 CGTCCACATATGGCTTGCCA 60.748 55.000 17.19 17.19 46.80 4.92
414 415 2.902486 TCCACATATGGCTTGCCAAAAA 59.098 40.909 18.76 7.70 46.80 1.94
416 417 2.667481 CACATATGGCTTGCCAAAAACG 59.333 45.455 18.76 8.13 0.00 3.60
418 419 3.508012 ACATATGGCTTGCCAAAAACGTA 59.492 39.130 18.76 5.69 0.00 3.57
419 420 4.159506 ACATATGGCTTGCCAAAAACGTAT 59.840 37.500 18.76 7.77 0.00 3.06
423 424 3.508012 TGGCTTGCCAAAAACGTATACAT 59.492 39.130 12.40 0.00 0.00 2.29
429 430 5.979993 TGCCAAAAACGTATACATAGGAGA 58.020 37.500 3.32 0.00 0.00 3.71
461 462 2.656085 CGTTCGCTGAGTATCCAGATC 58.344 52.381 0.00 0.00 36.29 2.75
497 498 9.732130 ATAATTATGGCTATTCTTTGGAGTCTC 57.268 33.333 0.00 0.00 0.00 3.36
542 543 5.982890 TCTTCAAAAATGAGGTGGAATCC 57.017 39.130 0.00 0.00 0.00 3.01
566 567 0.560240 GATTCGTCTTACGTCGTGCG 59.440 55.000 8.47 7.54 43.14 5.34
567 568 0.795735 ATTCGTCTTACGTCGTGCGG 60.796 55.000 8.47 0.00 46.52 5.69
586 588 4.051237 GCGGCTCAAGTCATTTTTCTTTT 58.949 39.130 0.00 0.00 0.00 2.27
605 607 8.475331 TTCTTTTGTCTACTCGATGTTATTCC 57.525 34.615 0.00 0.00 0.00 3.01
685 687 2.908688 AAAATGTGTTCAGGTTGGCC 57.091 45.000 0.00 0.00 0.00 5.36
756 766 2.125431 GGCTTTGCCCGCGTAGTA 60.125 61.111 4.92 0.00 44.06 1.82
757 767 1.523032 GGCTTTGCCCGCGTAGTAT 60.523 57.895 4.92 0.00 44.06 2.12
758 768 0.249573 GGCTTTGCCCGCGTAGTATA 60.250 55.000 4.92 0.00 44.06 1.47
759 769 1.137513 GCTTTGCCCGCGTAGTATAG 58.862 55.000 4.92 1.49 0.00 1.31
760 770 1.537562 GCTTTGCCCGCGTAGTATAGT 60.538 52.381 4.92 0.00 0.00 2.12
761 771 2.287788 GCTTTGCCCGCGTAGTATAGTA 60.288 50.000 4.92 0.00 0.00 1.82
762 772 3.303406 CTTTGCCCGCGTAGTATAGTAC 58.697 50.000 4.92 7.56 0.00 2.73
771 781 5.450412 CCGCGTAGTATAGTACCCTCAAAAA 60.450 44.000 4.92 0.00 0.00 1.94
793 803 2.808906 AGGAGCTCCCCATTTTACAC 57.191 50.000 29.54 0.00 36.42 2.90
1046 1114 3.478394 GACGCGCGCAGATGTGAA 61.478 61.111 32.58 0.00 0.00 3.18
1181 1578 2.300152 GTGAGTGTGTTCCTCATCTCCA 59.700 50.000 0.00 0.00 40.79 3.86
1197 1594 0.180642 TCCACTCTAGATCCGCGTCT 59.819 55.000 4.92 4.70 0.00 4.18
1199 1596 1.405821 CCACTCTAGATCCGCGTCTTT 59.594 52.381 4.92 0.00 0.00 2.52
1204 1606 5.749109 CACTCTAGATCCGCGTCTTTTAATT 59.251 40.000 4.92 0.00 0.00 1.40
1208 1610 5.019785 AGATCCGCGTCTTTTAATTACCT 57.980 39.130 4.92 0.00 0.00 3.08
1211 1613 4.567971 TCCGCGTCTTTTAATTACCTTGA 58.432 39.130 4.92 0.00 0.00 3.02
1213 1615 5.064198 TCCGCGTCTTTTAATTACCTTGATG 59.936 40.000 4.92 0.00 0.00 3.07
1219 1621 7.812669 CGTCTTTTAATTACCTTGATGGCTTTT 59.187 33.333 0.00 0.00 40.22 2.27
1222 1624 9.143631 CTTTTAATTACCTTGATGGCTTTTCTG 57.856 33.333 0.00 0.00 40.22 3.02
1224 1626 6.670695 AATTACCTTGATGGCTTTTCTGTT 57.329 33.333 0.00 0.00 40.22 3.16
1225 1627 6.670695 ATTACCTTGATGGCTTTTCTGTTT 57.329 33.333 0.00 0.00 40.22 2.83
1240 1718 2.880268 TCTGTTTGGTCTTGTGCATCTG 59.120 45.455 0.00 0.00 0.00 2.90
1248 1755 1.002430 TCTTGTGCATCTGGTCCTGTC 59.998 52.381 0.00 0.00 0.00 3.51
1267 1774 6.775142 TCCTGTCACTTTGTTAAATTGGATGA 59.225 34.615 0.00 0.00 0.00 2.92
1282 1789 3.411446 TGGATGATGCGGAACCATTATC 58.589 45.455 0.00 0.00 37.44 1.75
1284 1799 4.074970 GGATGATGCGGAACCATTATCTT 58.925 43.478 6.80 0.00 37.95 2.40
1288 1803 4.335315 TGATGCGGAACCATTATCTTTGAC 59.665 41.667 0.00 0.00 0.00 3.18
1296 1811 2.355756 CCATTATCTTTGACTGCGTGGG 59.644 50.000 0.00 0.00 0.00 4.61
1303 1818 4.839121 TCTTTGACTGCGTGGGTTAATAT 58.161 39.130 0.00 0.00 0.00 1.28
1305 1820 2.912771 TGACTGCGTGGGTTAATATGG 58.087 47.619 0.00 0.00 0.00 2.74
1309 1824 0.666374 GCGTGGGTTAATATGGTGCC 59.334 55.000 0.00 0.00 0.00 5.01
1317 1832 6.951778 GTGGGTTAATATGGTGCCCTTATAAT 59.048 38.462 0.00 0.00 39.97 1.28
1372 1966 1.672145 GCTGTTGGACCGGACTAGAAC 60.672 57.143 9.46 7.71 0.00 3.01
1399 1993 9.893305 TGAAGTTCTTTTAGCTTTATAAACAGC 57.107 29.630 4.17 1.53 36.16 4.40
1426 2050 7.076842 TCTTATAACAGTAGTACCGTGTCAC 57.923 40.000 0.00 0.00 0.00 3.67
1469 2133 7.106439 TCAAGTTGCATTTTCCTACTTTGAA 57.894 32.000 0.00 0.00 0.00 2.69
1478 2142 6.539649 TTTTCCTACTTTGAACGACAGATG 57.460 37.500 0.00 0.00 0.00 2.90
1505 2174 5.409520 TGCACATTTAGACTGCTTACTCTTG 59.590 40.000 0.00 0.00 0.00 3.02
1506 2175 5.409826 GCACATTTAGACTGCTTACTCTTGT 59.590 40.000 0.00 0.00 0.00 3.16
1569 2279 0.763035 ACACTACAACCCTCCCACAC 59.237 55.000 0.00 0.00 0.00 3.82
1572 2282 0.613777 CTACAACCCTCCCACACTCC 59.386 60.000 0.00 0.00 0.00 3.85
1582 2350 4.407365 CCTCCCACACTCCTAACAAATTT 58.593 43.478 0.00 0.00 0.00 1.82
1587 2355 8.801882 TCCCACACTCCTAACAAATTTATTAG 57.198 34.615 8.93 8.93 0.00 1.73
1612 2382 7.385668 CAAACAGTGCTTTCAAATGACTTAG 57.614 36.000 0.00 0.00 0.00 2.18
1613 2383 6.942532 AACAGTGCTTTCAAATGACTTAGA 57.057 33.333 0.00 0.00 0.00 2.10
1614 2384 7.516198 AACAGTGCTTTCAAATGACTTAGAT 57.484 32.000 0.00 0.00 0.00 1.98
1615 2385 6.906659 ACAGTGCTTTCAAATGACTTAGATG 58.093 36.000 0.00 0.00 0.00 2.90
1616 2386 5.798934 CAGTGCTTTCAAATGACTTAGATGC 59.201 40.000 0.00 0.00 0.00 3.91
1617 2387 5.709164 AGTGCTTTCAAATGACTTAGATGCT 59.291 36.000 0.00 0.00 0.00 3.79
1618 2388 6.026513 GTGCTTTCAAATGACTTAGATGCTC 58.973 40.000 0.00 0.00 0.00 4.26
1619 2389 5.706833 TGCTTTCAAATGACTTAGATGCTCA 59.293 36.000 0.00 0.00 0.00 4.26
1620 2390 6.128090 TGCTTTCAAATGACTTAGATGCTCAG 60.128 38.462 0.00 0.00 0.00 3.35
1621 2391 6.128063 GCTTTCAAATGACTTAGATGCTCAGT 60.128 38.462 0.00 0.00 0.00 3.41
1622 2392 6.732531 TTCAAATGACTTAGATGCTCAGTG 57.267 37.500 0.00 0.00 0.00 3.66
1623 2393 6.041423 TCAAATGACTTAGATGCTCAGTGA 57.959 37.500 0.00 0.00 0.00 3.41
1624 2394 6.647229 TCAAATGACTTAGATGCTCAGTGAT 58.353 36.000 0.00 0.00 0.00 3.06
1625 2395 6.537660 TCAAATGACTTAGATGCTCAGTGATG 59.462 38.462 0.00 0.00 0.00 3.07
1626 2396 3.790091 TGACTTAGATGCTCAGTGATGC 58.210 45.455 0.00 0.20 0.00 3.91
1627 2397 3.196254 TGACTTAGATGCTCAGTGATGCA 59.804 43.478 16.24 16.24 43.67 3.96
1628 2398 3.529533 ACTTAGATGCTCAGTGATGCAC 58.470 45.455 16.24 11.56 42.26 4.57
1629 2399 3.197333 ACTTAGATGCTCAGTGATGCACT 59.803 43.478 16.24 16.08 46.51 4.40
1630 2400 2.312722 AGATGCTCAGTGATGCACTC 57.687 50.000 16.24 14.32 43.43 3.51
1631 2401 1.134461 AGATGCTCAGTGATGCACTCC 60.134 52.381 16.24 10.40 43.43 3.85
1632 2402 0.910338 ATGCTCAGTGATGCACTCCT 59.090 50.000 16.24 2.29 43.43 3.69
1633 2403 1.560505 TGCTCAGTGATGCACTCCTA 58.439 50.000 11.66 0.00 43.43 2.94
1634 2404 1.901833 TGCTCAGTGATGCACTCCTAA 59.098 47.619 11.66 0.00 43.43 2.69
1635 2405 2.275318 GCTCAGTGATGCACTCCTAAC 58.725 52.381 8.99 0.00 43.43 2.34
1636 2406 2.354103 GCTCAGTGATGCACTCCTAACA 60.354 50.000 8.99 0.00 43.43 2.41
1637 2407 3.866066 GCTCAGTGATGCACTCCTAACAA 60.866 47.826 8.99 0.00 43.43 2.83
1638 2408 4.318332 CTCAGTGATGCACTCCTAACAAA 58.682 43.478 0.00 0.00 43.43 2.83
1639 2409 4.910195 TCAGTGATGCACTCCTAACAAAT 58.090 39.130 0.00 0.00 43.43 2.32
1640 2410 5.316167 TCAGTGATGCACTCCTAACAAATT 58.684 37.500 0.00 0.00 43.43 1.82
1641 2411 5.769662 TCAGTGATGCACTCCTAACAAATTT 59.230 36.000 0.00 0.00 43.43 1.82
1642 2412 6.939730 TCAGTGATGCACTCCTAACAAATTTA 59.060 34.615 0.00 0.00 43.43 1.40
1643 2413 7.611467 TCAGTGATGCACTCCTAACAAATTTAT 59.389 33.333 0.00 0.00 43.43 1.40
1644 2414 8.246180 CAGTGATGCACTCCTAACAAATTTATT 58.754 33.333 0.00 0.00 43.43 1.40
1645 2415 9.461312 AGTGATGCACTCCTAACAAATTTATTA 57.539 29.630 0.00 0.00 41.21 0.98
1646 2416 9.722056 GTGATGCACTCCTAACAAATTTATTAG 57.278 33.333 8.93 8.93 0.00 1.73
1647 2417 8.405531 TGATGCACTCCTAACAAATTTATTAGC 58.594 33.333 10.21 1.49 0.00 3.09
1648 2418 7.695480 TGCACTCCTAACAAATTTATTAGCA 57.305 32.000 10.21 3.87 0.00 3.49
1649 2419 8.116651 TGCACTCCTAACAAATTTATTAGCAA 57.883 30.769 10.21 1.30 0.00 3.91
1650 2420 8.580720 TGCACTCCTAACAAATTTATTAGCAAA 58.419 29.630 10.21 0.00 0.00 3.68
1651 2421 8.860128 GCACTCCTAACAAATTTATTAGCAAAC 58.140 33.333 10.21 0.00 0.00 2.93
1652 2422 9.906660 CACTCCTAACAAATTTATTAGCAAACA 57.093 29.630 10.21 0.00 0.00 2.83
1655 2425 9.906660 TCCTAACAAATTTATTAGCAAACAGTG 57.093 29.630 10.21 0.00 0.00 3.66
1671 2441 7.153478 CAAACAGTGCTTTCAAATGACTTAC 57.847 36.000 0.00 0.00 0.00 2.34
1681 2451 5.868043 TCAAATGACTTACATGCTCAGTG 57.132 39.130 0.00 0.00 39.39 3.66
1682 2452 5.550290 TCAAATGACTTACATGCTCAGTGA 58.450 37.500 0.00 0.00 39.39 3.41
1690 2460 5.757320 ACTTACATGCTCAGTGATGATTAGC 59.243 40.000 0.00 0.00 0.00 3.09
1708 2480 8.506168 TGATTAGCTTTTGGTAAACATAGGAG 57.494 34.615 0.00 0.00 44.24 3.69
1746 2518 3.826524 TGCCATGAACAAGGTTGAACTA 58.173 40.909 0.00 0.00 0.00 2.24
1786 2559 3.728076 ATTTGACAGATGATGCCATGC 57.272 42.857 0.00 0.00 32.09 4.06
1848 2629 7.549615 AACAGAACAAAGTAGTTTACCTGTC 57.450 36.000 17.24 4.59 32.31 3.51
1863 2644 2.108250 ACCTGTCAAACCACCATAAGCT 59.892 45.455 0.00 0.00 0.00 3.74
1889 2675 6.144563 CGCTGTAGTGGTTAATGATCAGTATG 59.855 42.308 3.33 0.00 37.54 2.39
2030 2961 4.223923 CAGGAGGTAGTTGGTGATCTTCTT 59.776 45.833 0.00 0.00 0.00 2.52
2310 3268 8.737168 TTGGATTGAAATCTTACCTACATCTG 57.263 34.615 3.21 0.00 35.73 2.90
2418 3376 3.877559 CATTGTCAGCCAAGACCTATCA 58.122 45.455 0.00 0.00 37.73 2.15
2619 3579 5.248380 AGAAGGGTGAGCTTTCAACTATT 57.752 39.130 9.15 0.00 0.00 1.73
2653 3613 6.045955 TGCATTAACCTTTTTCTTGTTCCAC 58.954 36.000 0.00 0.00 0.00 4.02
2755 3747 3.938963 TGTCTGAACAGTTTTGTGTCTCC 59.061 43.478 1.73 0.00 37.67 3.71
2765 3757 6.433093 ACAGTTTTGTGTCTCCTGTTTACTTT 59.567 34.615 0.00 0.00 35.83 2.66
2793 3790 8.681486 TCTTACCTGGATCATATTGATTGTTG 57.319 34.615 0.00 0.00 37.20 3.33
2820 3817 1.871126 GCAAGAAGGTGAGCAAGGCC 61.871 60.000 0.00 0.00 0.00 5.19
3068 4065 8.529476 AGATGTTTACAGTCTTCCGTTATTAGT 58.471 33.333 0.00 0.00 0.00 2.24
3102 4099 5.499139 AAGAATTTCTCGCACTTTGTTGA 57.501 34.783 0.00 0.00 0.00 3.18
3334 4336 7.066284 CCCCTCTTATCAGTCACTTAACATTTG 59.934 40.741 0.00 0.00 0.00 2.32
3341 4343 7.946655 TCAGTCACTTAACATTTGTCAGTAG 57.053 36.000 0.00 0.00 0.00 2.57
3409 4411 6.413892 TCATACATCCTGACTGCAATTTGTA 58.586 36.000 0.00 0.00 0.00 2.41
3444 4607 6.312141 TCCACCACATCATAAGATTCTTGA 57.688 37.500 9.22 0.00 30.20 3.02
3498 4697 5.620738 TTGTTTGAAATGGAATTGGGACA 57.379 34.783 0.00 0.00 36.10 4.02
3588 5080 2.682155 GGAGCTCCGACAAAGATTCT 57.318 50.000 19.06 0.00 0.00 2.40
3589 5081 2.979240 GGAGCTCCGACAAAGATTCTT 58.021 47.619 19.06 0.00 0.00 2.52
3590 5082 2.675348 GGAGCTCCGACAAAGATTCTTG 59.325 50.000 19.06 0.00 0.00 3.02
3591 5083 3.330267 GAGCTCCGACAAAGATTCTTGT 58.670 45.455 0.87 0.83 42.23 3.16
3616 5208 2.606587 GGTCCTCAGGGGCACATGT 61.607 63.158 0.00 0.00 39.39 3.21
3627 5219 2.488153 GGGGCACATGTACAAAGACTTC 59.512 50.000 0.00 0.00 0.00 3.01
3631 5223 5.001232 GGCACATGTACAAAGACTTCCTAA 58.999 41.667 0.00 0.00 0.00 2.69
3653 5280 0.874607 GCGACAACGGTTCACTCTGT 60.875 55.000 0.00 0.00 40.15 3.41
3671 5298 1.937223 TGTTTGCAGTAGTGGTCGTTG 59.063 47.619 0.00 0.00 0.00 4.10
3673 5300 0.753867 TTGCAGTAGTGGTCGTTGGA 59.246 50.000 0.00 0.00 0.00 3.53
3691 5318 5.617751 CGTTGGATGGTCTTGAAATCTTGAC 60.618 44.000 0.00 0.00 0.00 3.18
3731 5359 5.103290 TGACATGCTTTAGTTTTTCGGTC 57.897 39.130 0.00 0.00 0.00 4.79
3737 5365 5.575019 TGCTTTAGTTTTTCGGTCAACTTC 58.425 37.500 0.36 0.00 34.92 3.01
3749 5377 9.459640 TTTTCGGTCAACTTCTATAATAGATCG 57.540 33.333 0.00 0.00 34.22 3.69
3769 5398 5.941948 TCGGATCCTTTTCAGAAGAAAAC 57.058 39.130 10.75 0.00 45.97 2.43
3792 5421 5.977129 ACTTGCCAAAGTTTTGTTAAGATCG 59.023 36.000 17.46 0.00 44.47 3.69
3823 5452 1.291132 CGAAGCTCGGGAGATTTTCC 58.709 55.000 0.25 0.00 46.00 3.13
3826 5455 3.348119 GAAGCTCGGGAGATTTTCCTTT 58.652 45.455 0.25 0.00 45.98 3.11
3851 5480 6.503616 TTTGCGTTTATTGTGTTGTGATTC 57.496 33.333 0.00 0.00 0.00 2.52
3881 5700 3.781079 TGTTGCAAGTTTCACTTCTGG 57.219 42.857 0.00 0.00 36.03 3.86
3919 5738 3.774766 TGCTCTAAGGCAACCAAGAGATA 59.225 43.478 16.10 5.35 37.81 1.98
3921 5740 4.363999 CTCTAAGGCAACCAAGAGATACG 58.636 47.826 9.32 0.00 37.81 3.06
3934 5753 7.609056 ACCAAGAGATACGAAAGCTAAAACTA 58.391 34.615 0.00 0.00 0.00 2.24
3983 5802 4.335416 TCAAAATGTCCATTCACCTCCTC 58.665 43.478 0.00 0.00 0.00 3.71
4040 5859 1.897802 CCCTACACCGTCCTTAACTGT 59.102 52.381 0.00 0.00 0.00 3.55
4041 5860 2.353406 CCCTACACCGTCCTTAACTGTG 60.353 54.545 0.00 0.00 45.56 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
195 196 8.669243 GGAATTCAAATGTTAACAACCACAAAA 58.331 29.630 13.23 1.99 0.00 2.44
196 197 8.043710 AGGAATTCAAATGTTAACAACCACAAA 58.956 29.630 13.23 3.50 0.00 2.83
197 198 7.493971 CAGGAATTCAAATGTTAACAACCACAA 59.506 33.333 13.23 2.89 0.00 3.33
198 199 6.983307 CAGGAATTCAAATGTTAACAACCACA 59.017 34.615 13.23 0.00 0.00 4.17
199 200 7.206687 TCAGGAATTCAAATGTTAACAACCAC 58.793 34.615 13.23 0.00 0.00 4.16
200 201 7.353414 TCAGGAATTCAAATGTTAACAACCA 57.647 32.000 13.23 0.00 0.00 3.67
201 202 8.831715 ATTCAGGAATTCAAATGTTAACAACC 57.168 30.769 13.23 6.41 0.00 3.77
274 275 9.423061 CCGGAATTTCAAAAGATGTTCTTAATT 57.577 29.630 0.00 0.00 35.27 1.40
275 276 8.585018 ACCGGAATTTCAAAAGATGTTCTTAAT 58.415 29.630 9.46 0.00 35.27 1.40
276 277 7.947282 ACCGGAATTTCAAAAGATGTTCTTAA 58.053 30.769 9.46 0.00 35.27 1.85
277 278 7.229707 TGACCGGAATTTCAAAAGATGTTCTTA 59.770 33.333 9.46 0.00 35.27 2.10
278 279 6.040391 TGACCGGAATTTCAAAAGATGTTCTT 59.960 34.615 9.46 0.00 38.59 2.52
279 280 5.534654 TGACCGGAATTTCAAAAGATGTTCT 59.465 36.000 9.46 0.00 0.00 3.01
280 281 5.768317 TGACCGGAATTTCAAAAGATGTTC 58.232 37.500 9.46 0.00 0.00 3.18
281 282 5.782893 TGACCGGAATTTCAAAAGATGTT 57.217 34.783 9.46 0.00 0.00 2.71
282 283 5.982890 ATGACCGGAATTTCAAAAGATGT 57.017 34.783 9.46 0.00 0.00 3.06
283 284 7.656707 AAAATGACCGGAATTTCAAAAGATG 57.343 32.000 9.46 0.00 0.00 2.90
406 407 5.979993 TCTCCTATGTATACGTTTTTGGCA 58.020 37.500 2.23 0.00 0.00 4.92
410 411 6.041751 CCCCTCTCTCCTATGTATACGTTTTT 59.958 42.308 2.23 0.00 0.00 1.94
414 415 3.010361 CCCCCTCTCTCCTATGTATACGT 59.990 52.174 2.56 2.56 0.00 3.57
416 417 4.345854 CACCCCCTCTCTCCTATGTATAC 58.654 52.174 0.00 0.00 0.00 1.47
418 419 2.493687 GCACCCCCTCTCTCCTATGTAT 60.494 54.545 0.00 0.00 0.00 2.29
419 420 1.133136 GCACCCCCTCTCTCCTATGTA 60.133 57.143 0.00 0.00 0.00 2.29
423 424 2.279073 CGCACCCCCTCTCTCCTA 59.721 66.667 0.00 0.00 0.00 2.94
448 449 3.895041 TGTATTGCGGATCTGGATACTCA 59.105 43.478 3.14 0.00 37.61 3.41
461 462 8.677300 AGAATAGCCATAATTATTGTATTGCGG 58.323 33.333 0.00 0.00 0.00 5.69
497 498 4.605640 TTTTGCATCCCTTCTTTTCCAG 57.394 40.909 0.00 0.00 0.00 3.86
566 567 6.276091 AGACAAAAGAAAAATGACTTGAGCC 58.724 36.000 0.00 0.00 0.00 4.70
567 568 8.131731 AGTAGACAAAAGAAAAATGACTTGAGC 58.868 33.333 0.00 0.00 0.00 4.26
617 619 1.464734 TACACAGAAGCCGGAGAGAG 58.535 55.000 5.05 0.00 0.00 3.20
621 623 6.151985 AGAGAATATATACACAGAAGCCGGAG 59.848 42.308 5.05 0.00 0.00 4.63
626 628 9.534565 TTCAACAGAGAATATATACACAGAAGC 57.465 33.333 0.00 0.00 0.00 3.86
660 662 7.102993 GGCCAACCTGAACACATTTTATTAAT 58.897 34.615 0.00 0.00 0.00 1.40
662 664 6.031751 GGCCAACCTGAACACATTTTATTA 57.968 37.500 0.00 0.00 0.00 0.98
680 682 1.067283 CACACACACACAAAAGGCCAA 60.067 47.619 5.01 0.00 0.00 4.52
685 687 3.281341 ACACACACACACACACAAAAG 57.719 42.857 0.00 0.00 0.00 2.27
771 781 4.686122 CGTGTAAAATGGGGAGCTCCTATT 60.686 45.833 31.36 25.99 46.94 1.73
772 782 3.181454 CGTGTAAAATGGGGAGCTCCTAT 60.181 47.826 31.36 22.18 38.48 2.57
783 793 2.162809 GTGGGCCTAACGTGTAAAATGG 59.837 50.000 4.53 0.00 0.00 3.16
784 794 2.814919 TGTGGGCCTAACGTGTAAAATG 59.185 45.455 4.53 0.00 0.00 2.32
785 795 3.143211 TGTGGGCCTAACGTGTAAAAT 57.857 42.857 4.53 0.00 0.00 1.82
1046 1114 1.598130 GGCTTCGCACAGGAACAGT 60.598 57.895 0.00 0.00 0.00 3.55
1181 1578 4.978083 TTAAAAGACGCGGATCTAGAGT 57.022 40.909 12.47 0.00 0.00 3.24
1197 1594 8.646900 ACAGAAAAGCCATCAAGGTAATTAAAA 58.353 29.630 0.00 0.00 40.61 1.52
1199 1596 7.775053 ACAGAAAAGCCATCAAGGTAATTAA 57.225 32.000 0.00 0.00 40.61 1.40
1204 1606 4.280677 CCAAACAGAAAAGCCATCAAGGTA 59.719 41.667 0.00 0.00 40.61 3.08
1208 1610 3.960102 AGACCAAACAGAAAAGCCATCAA 59.040 39.130 0.00 0.00 0.00 2.57
1211 1613 3.706086 ACAAGACCAAACAGAAAAGCCAT 59.294 39.130 0.00 0.00 0.00 4.40
1213 1615 3.447742 CACAAGACCAAACAGAAAAGCC 58.552 45.455 0.00 0.00 0.00 4.35
1219 1621 2.880268 CAGATGCACAAGACCAAACAGA 59.120 45.455 0.00 0.00 0.00 3.41
1222 1624 1.956477 ACCAGATGCACAAGACCAAAC 59.044 47.619 0.00 0.00 0.00 2.93
1224 1626 1.545428 GGACCAGATGCACAAGACCAA 60.545 52.381 0.00 0.00 0.00 3.67
1225 1627 0.036732 GGACCAGATGCACAAGACCA 59.963 55.000 0.00 0.00 0.00 4.02
1240 1718 5.300792 TCCAATTTAACAAAGTGACAGGACC 59.699 40.000 0.99 0.00 38.65 4.46
1248 1755 5.289193 CCGCATCATCCAATTTAACAAAGTG 59.711 40.000 0.00 0.00 36.31 3.16
1267 1774 4.336433 CAGTCAAAGATAATGGTTCCGCAT 59.664 41.667 0.00 0.00 0.00 4.73
1282 1789 4.201910 CCATATTAACCCACGCAGTCAAAG 60.202 45.833 0.00 0.00 41.61 2.77
1284 1799 3.275143 CCATATTAACCCACGCAGTCAA 58.725 45.455 0.00 0.00 41.61 3.18
1288 1803 1.333619 GCACCATATTAACCCACGCAG 59.666 52.381 0.00 0.00 0.00 5.18
1305 1820 5.528870 GCACCATAACAATTATAAGGGCAC 58.471 41.667 0.00 0.00 31.36 5.01
1309 1824 9.214957 TCTAATCGCACCATAACAATTATAAGG 57.785 33.333 0.00 0.00 0.00 2.69
1317 1832 6.542005 ACATGATTCTAATCGCACCATAACAA 59.458 34.615 0.00 0.00 38.26 2.83
1393 1987 7.543520 GGTACTACTGTTATAAGAACGCTGTTT 59.456 37.037 0.00 0.00 0.00 2.83
1399 1993 6.546395 ACACGGTACTACTGTTATAAGAACG 58.454 40.000 0.00 0.00 35.04 3.95
1415 2023 2.521105 AAACCTCTGTGACACGGTAC 57.479 50.000 14.06 0.00 0.00 3.34
1426 2050 9.450807 CAACTTGAAACTACATTTAAACCTCTG 57.549 33.333 0.00 0.00 0.00 3.35
1469 2133 5.063944 GTCTAAATGTGCATTCATCTGTCGT 59.936 40.000 0.00 0.00 0.00 4.34
1478 2142 6.314896 AGAGTAAGCAGTCTAAATGTGCATTC 59.685 38.462 0.00 0.00 39.80 2.67
1597 2365 7.118825 TCACTGAGCATCTAAGTCATTTGAAAG 59.881 37.037 0.00 0.00 34.92 2.62
1606 2376 3.555139 GTGCATCACTGAGCATCTAAGTC 59.445 47.826 0.00 0.00 43.44 3.01
1611 2381 1.134461 GGAGTGCATCACTGAGCATCT 60.134 52.381 3.98 6.13 45.44 2.90
1612 2382 1.134461 AGGAGTGCATCACTGAGCATC 60.134 52.381 3.98 5.86 45.44 3.91
1613 2383 0.910338 AGGAGTGCATCACTGAGCAT 59.090 50.000 3.98 0.00 45.44 3.79
1614 2384 1.560505 TAGGAGTGCATCACTGAGCA 58.439 50.000 3.98 0.00 45.44 4.26
1615 2385 2.275318 GTTAGGAGTGCATCACTGAGC 58.725 52.381 3.98 0.00 45.44 4.26
1616 2386 3.599730 TGTTAGGAGTGCATCACTGAG 57.400 47.619 3.98 0.00 45.44 3.35
1617 2387 4.350368 TTTGTTAGGAGTGCATCACTGA 57.650 40.909 3.98 0.00 45.44 3.41
1618 2388 5.633830 AATTTGTTAGGAGTGCATCACTG 57.366 39.130 3.98 0.00 45.44 3.66
1620 2390 9.722056 CTAATAAATTTGTTAGGAGTGCATCAC 57.278 33.333 21.01 0.00 30.89 3.06
1621 2391 8.405531 GCTAATAAATTTGTTAGGAGTGCATCA 58.594 33.333 26.47 0.00 33.90 3.07
1622 2392 8.405531 TGCTAATAAATTTGTTAGGAGTGCATC 58.594 33.333 26.47 13.59 33.90 3.91
1623 2393 8.292444 TGCTAATAAATTTGTTAGGAGTGCAT 57.708 30.769 26.47 0.00 33.90 3.96
1624 2394 7.695480 TGCTAATAAATTTGTTAGGAGTGCA 57.305 32.000 26.47 19.16 33.90 4.57
1625 2395 8.860128 GTTTGCTAATAAATTTGTTAGGAGTGC 58.140 33.333 26.47 17.41 34.72 4.40
1626 2396 9.906660 TGTTTGCTAATAAATTTGTTAGGAGTG 57.093 29.630 26.47 10.23 34.72 3.51
1629 2399 9.906660 CACTGTTTGCTAATAAATTTGTTAGGA 57.093 29.630 26.47 23.42 33.90 2.94
1647 2417 6.751425 TGTAAGTCATTTGAAAGCACTGTTTG 59.249 34.615 0.00 0.00 0.00 2.93
1648 2418 6.862209 TGTAAGTCATTTGAAAGCACTGTTT 58.138 32.000 0.00 0.00 0.00 2.83
1649 2419 6.449635 TGTAAGTCATTTGAAAGCACTGTT 57.550 33.333 0.00 0.00 0.00 3.16
1650 2420 6.441274 CATGTAAGTCATTTGAAAGCACTGT 58.559 36.000 0.00 0.00 34.09 3.55
1651 2421 5.344128 GCATGTAAGTCATTTGAAAGCACTG 59.656 40.000 0.00 0.00 34.09 3.66
1652 2422 5.242393 AGCATGTAAGTCATTTGAAAGCACT 59.758 36.000 0.00 0.00 34.09 4.40
1653 2423 5.464168 AGCATGTAAGTCATTTGAAAGCAC 58.536 37.500 0.00 0.00 34.09 4.40
1654 2424 5.241285 TGAGCATGTAAGTCATTTGAAAGCA 59.759 36.000 0.00 0.00 34.09 3.91
1655 2425 5.702865 TGAGCATGTAAGTCATTTGAAAGC 58.297 37.500 0.00 0.00 34.09 3.51
1656 2426 6.800408 CACTGAGCATGTAAGTCATTTGAAAG 59.200 38.462 0.00 0.00 34.09 2.62
1657 2427 6.486320 TCACTGAGCATGTAAGTCATTTGAAA 59.514 34.615 0.00 0.00 34.09 2.69
1658 2428 5.997129 TCACTGAGCATGTAAGTCATTTGAA 59.003 36.000 0.00 0.00 34.09 2.69
1659 2429 5.550290 TCACTGAGCATGTAAGTCATTTGA 58.450 37.500 0.00 0.00 34.09 2.69
1660 2430 5.868043 TCACTGAGCATGTAAGTCATTTG 57.132 39.130 0.00 0.00 34.09 2.32
1661 2431 6.175471 TCATCACTGAGCATGTAAGTCATTT 58.825 36.000 0.00 0.00 34.09 2.32
1662 2432 5.737860 TCATCACTGAGCATGTAAGTCATT 58.262 37.500 0.00 0.00 34.09 2.57
1663 2433 5.349061 TCATCACTGAGCATGTAAGTCAT 57.651 39.130 0.00 0.00 37.22 3.06
1664 2434 4.806640 TCATCACTGAGCATGTAAGTCA 57.193 40.909 0.00 0.00 0.00 3.41
1665 2435 6.073873 GCTAATCATCACTGAGCATGTAAGTC 60.074 42.308 0.00 0.00 34.12 3.01
1666 2436 5.757320 GCTAATCATCACTGAGCATGTAAGT 59.243 40.000 0.00 0.00 34.12 2.24
1667 2437 5.990386 AGCTAATCATCACTGAGCATGTAAG 59.010 40.000 0.00 0.00 34.12 2.34
1668 2438 5.922053 AGCTAATCATCACTGAGCATGTAA 58.078 37.500 0.00 0.00 34.12 2.41
1669 2439 5.541953 AGCTAATCATCACTGAGCATGTA 57.458 39.130 0.00 0.00 34.12 2.29
1670 2440 4.418973 AGCTAATCATCACTGAGCATGT 57.581 40.909 0.00 0.00 34.12 3.21
1671 2441 5.752892 AAAGCTAATCATCACTGAGCATG 57.247 39.130 0.00 0.00 34.12 4.06
1681 2451 9.120538 TCCTATGTTTACCAAAAGCTAATCATC 57.879 33.333 0.00 0.00 0.00 2.92
1682 2452 9.125026 CTCCTATGTTTACCAAAAGCTAATCAT 57.875 33.333 0.00 0.00 0.00 2.45
1690 2460 8.265055 TCCATAGTCTCCTATGTTTACCAAAAG 58.735 37.037 8.46 0.00 46.14 2.27
1708 2480 2.438021 TGGCATTACAGGGTCCATAGTC 59.562 50.000 0.00 0.00 0.00 2.59
1746 2518 9.558648 GTCAAATTTTTGAAGCAGTTGAAAAAT 57.441 25.926 7.28 3.75 45.64 1.82
1768 2541 1.341187 TGGCATGGCATCATCTGTCAA 60.341 47.619 19.43 0.00 44.11 3.18
1848 2629 1.131126 CAGCGAGCTTATGGTGGTTTG 59.869 52.381 0.00 0.00 0.00 2.93
1863 2644 4.159693 ACTGATCATTAACCACTACAGCGA 59.840 41.667 0.00 0.00 0.00 4.93
1889 2675 8.911247 ATTTTTGTCAGTCAACAAACTAGAAC 57.089 30.769 0.00 0.00 45.98 3.01
1994 2925 2.227703 ACCTCCTGGGAGATCCTCTTA 58.772 52.381 17.36 0.00 44.53 2.10
2030 2961 2.827755 TGCCAGTAGATTACCTCACCA 58.172 47.619 0.00 0.00 0.00 4.17
2310 3268 2.053627 CCTGCAGAATTGACGCAAAAC 58.946 47.619 17.39 0.00 34.75 2.43
2418 3376 6.998074 TCTTGACAATCACCAAGTTGATAACT 59.002 34.615 3.87 0.00 45.46 2.24
2653 3613 2.979814 TAACACATCAGGATCCACGG 57.020 50.000 15.82 2.91 0.00 4.94
2709 3670 7.011482 ACAAGCACTATGATATTCGAAGGAAAC 59.989 37.037 3.35 0.00 35.40 2.78
2718 3679 7.493971 ACTGTTCAGACAAGCACTATGATATTC 59.506 37.037 6.83 0.00 34.85 1.75
2765 3757 9.699410 ACAATCAATATGATCCAGGTAAGAAAA 57.301 29.630 0.00 0.00 35.76 2.29
2793 3790 1.882623 CTCACCTTCTTGCCTGGAAAC 59.117 52.381 0.00 0.00 0.00 2.78
2820 3817 0.745845 CAAGACGCTGGATCTTGGGG 60.746 60.000 6.81 0.00 46.21 4.96
3024 4021 1.908340 CTTAGGCAGAGGCAGCAGGT 61.908 60.000 0.00 0.00 43.71 4.00
3068 4065 5.006358 GCGAGAAATTCTTCCGCTATTACAA 59.994 40.000 17.97 0.00 42.74 2.41
3102 4099 9.434420 GAAAGTAGCAGCTAGATTCATATCATT 57.566 33.333 16.95 0.00 32.95 2.57
3135 4132 6.389830 AACAGCATCAATTACAACTCAACA 57.610 33.333 0.00 0.00 0.00 3.33
3278 4279 4.724279 ACCTGAACCACCATAGAACTTT 57.276 40.909 0.00 0.00 0.00 2.66
3409 4411 6.065976 TGATGTGGTGGAAAATCATCTAGT 57.934 37.500 0.00 0.00 36.74 2.57
3581 5073 1.880027 GACCAACGCCACAAGAATCTT 59.120 47.619 0.00 0.00 0.00 2.40
3583 5075 0.521735 GGACCAACGCCACAAGAATC 59.478 55.000 0.00 0.00 0.00 2.52
3584 5076 0.110486 AGGACCAACGCCACAAGAAT 59.890 50.000 0.00 0.00 0.00 2.40
3587 5079 1.227823 TGAGGACCAACGCCACAAG 60.228 57.895 0.00 0.00 0.00 3.16
3588 5080 1.227823 CTGAGGACCAACGCCACAA 60.228 57.895 0.00 0.00 0.00 3.33
3589 5081 2.425592 CTGAGGACCAACGCCACA 59.574 61.111 0.00 0.00 0.00 4.17
3590 5082 2.358737 CCTGAGGACCAACGCCAC 60.359 66.667 0.00 0.00 0.00 5.01
3591 5083 3.636231 CCCTGAGGACCAACGCCA 61.636 66.667 0.00 0.00 33.47 5.69
3616 5208 4.038282 TGTCGCTGTTAGGAAGTCTTTGTA 59.962 41.667 0.00 0.00 0.00 2.41
3627 5219 0.788391 GAACCGTTGTCGCTGTTAGG 59.212 55.000 0.00 0.00 35.54 2.69
3631 5223 0.874607 GAGTGAACCGTTGTCGCTGT 60.875 55.000 0.00 0.00 35.54 4.40
3653 5280 1.139256 TCCAACGACCACTACTGCAAA 59.861 47.619 0.00 0.00 0.00 3.68
3671 5298 6.881602 ACTAAGTCAAGATTTCAAGACCATCC 59.118 38.462 0.00 0.00 0.00 3.51
3673 5300 8.697507 AAACTAAGTCAAGATTTCAAGACCAT 57.302 30.769 0.00 0.00 0.00 3.55
3691 5318 9.248291 AGCATGTCAAACATAACAAAAACTAAG 57.752 29.630 0.00 0.00 36.53 2.18
3769 5398 5.977129 ACGATCTTAACAAAACTTTGGCAAG 59.023 36.000 0.00 8.72 42.34 4.01
3784 5413 2.675844 CGGATTGTTGGCACGATCTTAA 59.324 45.455 13.45 0.00 41.93 1.85
3787 5416 0.249120 TCGGATTGTTGGCACGATCT 59.751 50.000 13.45 0.00 41.93 2.75
3792 5421 0.169009 GAGCTTCGGATTGTTGGCAC 59.831 55.000 0.00 0.00 0.00 5.01
3826 5455 6.893958 ATCACAACACAATAAACGCAAAAA 57.106 29.167 0.00 0.00 0.00 1.94
3837 5466 4.482990 AGGAAAGGGAATCACAACACAAT 58.517 39.130 0.00 0.00 0.00 2.71
3846 5475 4.314522 TGCAACATAGGAAAGGGAATCA 57.685 40.909 0.00 0.00 0.00 2.57
3851 5480 4.280677 TGAAACTTGCAACATAGGAAAGGG 59.719 41.667 0.00 0.00 0.00 3.95
3881 5700 2.746362 AGAGCAGACTAAACATGCAAGC 59.254 45.455 0.00 0.00 42.45 4.01
3919 5738 8.652810 TTTAGTTGACTAGTTTTAGCTTTCGT 57.347 30.769 0.00 0.00 0.00 3.85
3958 5777 5.602145 AGGAGGTGAATGGACATTTTGAAAA 59.398 36.000 0.00 0.00 0.00 2.29
3959 5778 5.147032 AGGAGGTGAATGGACATTTTGAAA 58.853 37.500 0.00 0.00 0.00 2.69
4015 5834 1.426751 AAGGACGGTGTAGGGTCAAA 58.573 50.000 0.00 0.00 34.87 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.